Multiple sequence alignment - TraesCS5A01G245200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G245200 chr5A 100.000 5833 0 0 1 5833 458666910 458672742 0.000000e+00 10772.0
1 TraesCS5A01G245200 chr5A 84.966 439 45 12 717 1140 458604630 458605062 5.400000e-115 425.0
2 TraesCS5A01G245200 chr5A 97.059 238 4 2 5599 5833 433805176 433805413 1.180000e-106 398.0
3 TraesCS5A01G245200 chr5A 80.400 250 32 14 403 641 458604157 458604400 2.160000e-39 174.0
4 TraesCS5A01G245200 chr5D 87.070 3341 202 86 683 3876 357506054 357509311 0.000000e+00 3565.0
5 TraesCS5A01G245200 chr5D 83.095 1745 172 65 3877 5556 357509347 357511033 0.000000e+00 1474.0
6 TraesCS5A01G245200 chr5D 87.131 373 33 8 317 682 357505650 357506014 5.440000e-110 409.0
7 TraesCS5A01G245200 chr5D 85.789 380 35 10 760 1126 357446138 357446511 9.170000e-103 385.0
8 TraesCS5A01G245200 chr5D 82.550 447 52 15 23 458 357445304 357445735 2.570000e-98 370.0
9 TraesCS5A01G245200 chr5D 89.600 125 9 2 495 618 357445882 357446003 7.830000e-34 156.0
10 TraesCS5A01G245200 chr5B 89.880 2757 153 57 683 3384 422521473 422524158 0.000000e+00 3430.0
11 TraesCS5A01G245200 chr5B 88.544 1257 58 29 3655 4889 422524453 422525645 0.000000e+00 1445.0
12 TraesCS5A01G245200 chr5B 79.235 549 72 20 798 1328 422218433 422218957 1.560000e-90 344.0
13 TraesCS5A01G245200 chr5B 86.719 128 11 3 549 676 422521303 422521424 2.830000e-28 137.0
14 TraesCS5A01G245200 chr5B 85.156 128 10 3 1149 1268 422076987 422077113 7.940000e-24 122.0
15 TraesCS5A01G245200 chr5B 89.888 89 6 2 1264 1349 422104608 422104696 1.720000e-20 111.0
16 TraesCS5A01G245200 chr2A 94.928 276 11 3 5560 5833 318446187 318446461 4.180000e-116 429.0
17 TraesCS5A01G245200 chr2A 90.909 308 9 4 5543 5833 47104130 47104435 4.240000e-106 396.0
18 TraesCS5A01G245200 chr2A 97.034 236 6 1 5599 5833 727517230 727516995 4.240000e-106 396.0
19 TraesCS5A01G245200 chr2A 91.039 279 15 8 5560 5833 46874878 46874605 9.230000e-98 368.0
20 TraesCS5A01G245200 chr2A 88.158 304 14 6 5551 5833 24933320 24933622 5.600000e-90 342.0
21 TraesCS5A01G245200 chr7A 97.034 236 5 2 5599 5833 636171524 636171758 4.240000e-106 396.0
22 TraesCS5A01G245200 chr7A 87.220 313 20 5 5541 5833 22049835 22050147 7.240000e-89 339.0
23 TraesCS5A01G245200 chr7A 94.366 71 4 0 5560 5630 20633228 20633158 6.180000e-20 110.0
24 TraesCS5A01G245200 chr3A 97.034 236 6 1 5599 5833 618272085 618272320 4.240000e-106 396.0
25 TraesCS5A01G245200 chr3A 83.495 103 12 3 4950 5047 712497587 712497689 2.240000e-14 91.6
26 TraesCS5A01G245200 chr7D 77.924 684 115 16 4897 5559 118821164 118821832 1.520000e-105 394.0
27 TraesCS5A01G245200 chr7D 83.051 177 19 8 5387 5559 390935970 390936139 3.640000e-32 150.0
28 TraesCS5A01G245200 chr6A 92.058 277 19 3 5560 5833 617741108 617740832 2.550000e-103 387.0
29 TraesCS5A01G245200 chr6A 88.889 90 10 0 5418 5507 453897634 453897545 1.720000e-20 111.0
30 TraesCS5A01G245200 chr2D 79.153 590 93 13 4950 5509 324246414 324247003 1.190000e-101 381.0
31 TraesCS5A01G245200 chr3B 90.972 288 14 8 5555 5833 816640395 816640679 1.530000e-100 377.0
32 TraesCS5A01G245200 chr3B 76.719 640 107 17 4948 5553 172731848 172732479 9.430000e-83 318.0
33 TraesCS5A01G245200 chr6B 77.086 707 103 23 4897 5559 591255671 591256362 2.590000e-93 353.0
34 TraesCS5A01G245200 chr1D 79.125 503 86 12 4897 5382 426579304 426578804 4.360000e-86 329.0
35 TraesCS5A01G245200 chr1D 81.141 403 70 4 4958 5354 318574275 318573873 9.430000e-83 318.0
36 TraesCS5A01G245200 chr1D 74.821 699 134 29 4897 5562 439126469 439127158 1.600000e-70 278.0
37 TraesCS5A01G245200 chr4D 78.924 446 87 5 4944 5383 64374562 64375006 4.420000e-76 296.0
38 TraesCS5A01G245200 chr4D 77.596 183 23 10 4897 5062 16138488 16138307 1.730000e-15 95.3
39 TraesCS5A01G245200 chr7B 79.330 358 71 3 5002 5357 614218760 614218404 1.260000e-61 248.0
40 TraesCS5A01G245200 chr7B 100.000 29 0 0 4900 4928 483031462 483031434 3.000000e-03 54.7
41 TraesCS5A01G245200 chr3D 77.397 146 17 5 4897 5026 553436547 553436402 8.110000e-09 73.1
42 TraesCS5A01G245200 chrUn 78.947 114 12 4 4886 4987 8039884 8039771 3.770000e-07 67.6
43 TraesCS5A01G245200 chrUn 78.947 114 12 4 4886 4987 8042757 8042644 3.770000e-07 67.6
44 TraesCS5A01G245200 chrUn 78.070 114 13 4 4886 4987 400811611 400811724 1.760000e-05 62.1
45 TraesCS5A01G245200 chrUn 94.872 39 2 0 4949 4987 448650358 448650396 1.760000e-05 62.1
46 TraesCS5A01G245200 chr1B 94.872 39 2 0 4949 4987 632892958 632892920 1.760000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G245200 chr5A 458666910 458672742 5832 False 10772.000000 10772 100.000000 1 5833 1 chr5A.!!$F2 5832
1 TraesCS5A01G245200 chr5A 458604157 458605062 905 False 299.500000 425 82.683000 403 1140 2 chr5A.!!$F3 737
2 TraesCS5A01G245200 chr5D 357505650 357511033 5383 False 1816.000000 3565 85.765333 317 5556 3 chr5D.!!$F2 5239
3 TraesCS5A01G245200 chr5D 357445304 357446511 1207 False 303.666667 385 85.979667 23 1126 3 chr5D.!!$F1 1103
4 TraesCS5A01G245200 chr5B 422521303 422525645 4342 False 1670.666667 3430 88.381000 549 4889 3 chr5B.!!$F4 4340
5 TraesCS5A01G245200 chr5B 422218433 422218957 524 False 344.000000 344 79.235000 798 1328 1 chr5B.!!$F3 530
6 TraesCS5A01G245200 chr7D 118821164 118821832 668 False 394.000000 394 77.924000 4897 5559 1 chr7D.!!$F1 662
7 TraesCS5A01G245200 chr2D 324246414 324247003 589 False 381.000000 381 79.153000 4950 5509 1 chr2D.!!$F1 559
8 TraesCS5A01G245200 chr3B 172731848 172732479 631 False 318.000000 318 76.719000 4948 5553 1 chr3B.!!$F1 605
9 TraesCS5A01G245200 chr6B 591255671 591256362 691 False 353.000000 353 77.086000 4897 5559 1 chr6B.!!$F1 662
10 TraesCS5A01G245200 chr1D 426578804 426579304 500 True 329.000000 329 79.125000 4897 5382 1 chr1D.!!$R2 485
11 TraesCS5A01G245200 chr1D 439126469 439127158 689 False 278.000000 278 74.821000 4897 5562 1 chr1D.!!$F1 665

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
715 1011 0.107017 ATCTCCCAATTCCCACGCAG 60.107 55.0 0.00 0.0 0.00 5.18 F
1134 1460 0.108424 GGCTGTGCCTCTGACACTAG 60.108 60.0 0.73 0.0 46.69 2.57 F
2644 3036 0.107459 GGGCTGCTCCTCAGGTAAAG 60.107 60.0 0.00 0.0 43.06 1.85 F
3613 4056 0.541863 ATGCTGGGTACTGGTAGTGC 59.458 55.0 0.00 0.0 0.00 4.40 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2506 2892 0.317479 ACGACAGGTTCTCCTTTCCG 59.683 55.0 0.00 0.0 43.07 4.30 R
2717 3111 0.040514 CGAATTCAGCAAACGCACCA 60.041 50.0 6.22 0.0 0.00 4.17 R
3892 4424 0.179034 GCATTGAGGAGGTAGGGCAG 60.179 60.0 0.00 0.0 0.00 4.85 R
5583 6242 0.176219 TATGGCCTTACGAACCGGTG 59.824 55.0 8.52 0.0 0.00 4.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
61 62 5.929697 ATATTAGATGTTCACATGTGGCG 57.070 39.130 25.16 0.11 36.57 5.69
62 63 2.760634 TAGATGTTCACATGTGGCGT 57.239 45.000 25.16 18.47 36.57 5.68
66 67 3.436704 AGATGTTCACATGTGGCGTAAAG 59.563 43.478 25.16 0.00 36.57 1.85
67 68 2.839975 TGTTCACATGTGGCGTAAAGA 58.160 42.857 25.16 7.90 0.00 2.52
75 76 5.121611 CACATGTGGCGTAAAGAGACAAATA 59.878 40.000 18.51 0.00 0.00 1.40
76 77 5.880332 ACATGTGGCGTAAAGAGACAAATAT 59.120 36.000 0.00 0.00 0.00 1.28
77 78 5.794687 TGTGGCGTAAAGAGACAAATATG 57.205 39.130 0.00 0.00 0.00 1.78
78 79 5.242434 TGTGGCGTAAAGAGACAAATATGT 58.758 37.500 0.00 0.00 44.25 2.29
95 96 1.917872 TGTCTTGTTGTAATGGGCCC 58.082 50.000 17.59 17.59 0.00 5.80
96 97 1.427368 TGTCTTGTTGTAATGGGCCCT 59.573 47.619 25.70 5.93 0.00 5.19
127 128 3.867857 TGGGGCAAAACTTTGTTTTCTC 58.132 40.909 5.57 2.43 40.24 2.87
136 137 3.356290 ACTTTGTTTTCTCTGTGCAGGT 58.644 40.909 0.00 0.00 0.00 4.00
142 143 4.702612 TGTTTTCTCTGTGCAGGTTACAAA 59.297 37.500 0.00 0.00 0.00 2.83
154 155 8.147058 TGTGCAGGTTACAAATCACAATATTTT 58.853 29.630 0.00 0.00 32.35 1.82
156 157 7.816995 TGCAGGTTACAAATCACAATATTTTCC 59.183 33.333 0.00 0.00 0.00 3.13
189 190 7.966246 TTTTACATGTTAGTACCGAACACAT 57.034 32.000 2.30 7.04 39.51 3.21
202 203 8.879759 AGTACCGAACACATATAAGTTTTCATG 58.120 33.333 7.53 0.00 29.75 3.07
265 275 0.254178 AAATGCCGAGCTCTGTGGAT 59.746 50.000 12.85 4.12 0.00 3.41
279 289 1.048601 GTGGATCTCGGCCTCCATAA 58.951 55.000 14.13 0.00 43.20 1.90
281 291 1.343069 GGATCTCGGCCTCCATAAGT 58.657 55.000 0.00 0.00 0.00 2.24
283 293 1.273886 GATCTCGGCCTCCATAAGTCC 59.726 57.143 0.00 0.00 0.00 3.85
284 294 1.107538 TCTCGGCCTCCATAAGTCCG 61.108 60.000 0.00 0.00 41.30 4.79
288 298 1.523938 GCCTCCATAAGTCCGCACC 60.524 63.158 0.00 0.00 0.00 5.01
301 311 2.328856 CGCACCCGGCATGTTGTTA 61.329 57.895 0.00 0.00 45.17 2.41
303 313 0.530288 GCACCCGGCATGTTGTTAAT 59.470 50.000 0.00 0.00 43.97 1.40
304 314 1.735369 GCACCCGGCATGTTGTTAATG 60.735 52.381 0.00 0.00 43.97 1.90
313 324 6.034470 CCGGCATGTTGTTAATGTATGTTTTC 59.966 38.462 0.00 0.00 0.00 2.29
357 368 6.330278 TGTCACAACTATATGTTTCCGAGAG 58.670 40.000 0.00 0.00 36.63 3.20
397 412 7.271511 AGGAACTGATGTGTTTTAATTTTGCA 58.728 30.769 0.00 0.00 37.18 4.08
416 431 2.625314 GCAAGGGGCAGGAATAGATTTC 59.375 50.000 0.00 0.00 43.97 2.17
417 432 3.225940 CAAGGGGCAGGAATAGATTTCC 58.774 50.000 0.00 0.00 38.86 3.13
419 434 1.545651 GGGGCAGGAATAGATTTCCGG 60.546 57.143 0.00 0.00 43.23 5.14
492 613 8.134905 ACAAAGCTCAAAAATCATTTGAACTC 57.865 30.769 7.15 0.53 37.89 3.01
493 614 6.998258 AAGCTCAAAAATCATTTGAACTCG 57.002 33.333 7.15 0.00 37.89 4.18
515 641 3.600388 GTCACAACTCATCGGAGGAAAT 58.400 45.455 0.00 0.00 45.81 2.17
544 670 5.694910 AGTTGTAAAATCAGACCGTACACTG 59.305 40.000 0.00 0.00 35.72 3.66
611 738 0.519519 CAATTACGCCACCGCAAGAA 59.480 50.000 0.00 0.00 43.02 2.52
626 753 3.300066 CGCAAGAACGCAACTAGTAGTAC 59.700 47.826 2.50 0.00 43.02 2.73
678 933 0.394352 GCTGAACCCGATTCCCACAT 60.394 55.000 0.00 0.00 36.36 3.21
679 934 1.668419 CTGAACCCGATTCCCACATC 58.332 55.000 0.00 0.00 36.36 3.06
680 935 0.107897 TGAACCCGATTCCCACATCG 60.108 55.000 0.00 0.00 44.78 3.84
681 936 1.436983 GAACCCGATTCCCACATCGC 61.437 60.000 0.00 0.00 43.99 4.58
682 937 2.591715 CCCGATTCCCACATCGCC 60.592 66.667 0.00 0.00 43.99 5.54
683 938 2.189257 CCGATTCCCACATCGCCA 59.811 61.111 0.00 0.00 43.99 5.69
684 939 1.227943 CCGATTCCCACATCGCCAT 60.228 57.895 0.00 0.00 43.99 4.40
685 940 1.230635 CCGATTCCCACATCGCCATC 61.231 60.000 0.00 0.00 43.99 3.51
686 941 1.560004 CGATTCCCACATCGCCATCG 61.560 60.000 0.00 0.00 39.69 3.84
687 942 1.845809 GATTCCCACATCGCCATCGC 61.846 60.000 0.00 0.00 35.26 4.58
710 1006 0.395586 CCGCAATCTCCCAATTCCCA 60.396 55.000 0.00 0.00 0.00 4.37
711 1007 0.740737 CGCAATCTCCCAATTCCCAC 59.259 55.000 0.00 0.00 0.00 4.61
712 1008 0.740737 GCAATCTCCCAATTCCCACG 59.259 55.000 0.00 0.00 0.00 4.94
713 1009 0.740737 CAATCTCCCAATTCCCACGC 59.259 55.000 0.00 0.00 0.00 5.34
714 1010 0.331278 AATCTCCCAATTCCCACGCA 59.669 50.000 0.00 0.00 0.00 5.24
715 1011 0.107017 ATCTCCCAATTCCCACGCAG 60.107 55.000 0.00 0.00 0.00 5.18
784 1080 3.885521 GAATCCGCCAGCAGCAGC 61.886 66.667 0.00 0.00 44.04 5.25
785 1081 4.728110 AATCCGCCAGCAGCAGCA 62.728 61.111 3.17 0.00 45.49 4.41
790 1086 4.719106 GCCAGCAGCAGCAGAGGT 62.719 66.667 3.17 0.00 45.49 3.85
802 1101 2.433318 AGAGGTCGCGCTTTGCTC 60.433 61.111 5.56 0.00 43.27 4.26
881 1190 1.017387 CTTTAATGGCGCTGGAGTCC 58.983 55.000 7.64 0.73 0.00 3.85
922 1231 2.238898 CCCCCACGAAGAGGATTTAACT 59.761 50.000 0.00 0.00 42.26 2.24
923 1232 3.532542 CCCCACGAAGAGGATTTAACTC 58.467 50.000 0.00 0.00 42.26 3.01
944 1253 4.856607 GGCTCCTCGCGACGGAAG 62.857 72.222 22.04 17.55 40.44 3.46
946 1255 3.132139 CTCCTCGCGACGGAAGGA 61.132 66.667 22.04 17.89 0.00 3.36
1132 1458 2.746359 GGCTGTGCCTCTGACACT 59.254 61.111 0.73 0.00 46.69 3.55
1133 1459 1.975327 GGCTGTGCCTCTGACACTA 59.025 57.895 0.73 0.00 46.69 2.74
1134 1460 0.108424 GGCTGTGCCTCTGACACTAG 60.108 60.000 0.73 0.00 46.69 2.57
1143 1469 3.869912 GCCTCTGACACTAGCATTTGGAA 60.870 47.826 0.00 0.00 0.00 3.53
1147 1476 5.181009 TCTGACACTAGCATTTGGAAGATG 58.819 41.667 0.00 0.00 0.00 2.90
1162 1491 4.035558 TGGAAGATGATTAGAATTGCGCAC 59.964 41.667 11.12 0.00 0.00 5.34
1167 1496 4.095410 TGATTAGAATTGCGCACCTTTG 57.905 40.909 11.12 0.00 0.00 2.77
1213 1544 3.498082 GTGACAATGTGCGGTTATTTCC 58.502 45.455 0.00 0.00 0.00 3.13
1217 1548 2.752354 CAATGTGCGGTTATTTCCTGGA 59.248 45.455 0.00 0.00 0.00 3.86
1218 1549 2.570415 TGTGCGGTTATTTCCTGGAA 57.430 45.000 4.68 4.68 0.00 3.53
1245 1601 4.918201 CTCGATTCCCTGGCCGCC 62.918 72.222 1.04 1.04 0.00 6.13
1297 1653 1.495584 TTGCGACTTTGCCGTCTGTC 61.496 55.000 0.00 0.00 0.00 3.51
1338 1694 4.796312 CGAACTCCGTGTTTGAATGTTTTT 59.204 37.500 0.94 0.00 41.46 1.94
1359 1715 5.509716 TTTTTCCTTTTTCCTCTTCGGTC 57.490 39.130 0.00 0.00 0.00 4.79
1448 1804 1.332904 GGTTGCCGATAATCTTTCGCG 60.333 52.381 0.00 0.00 35.31 5.87
1466 1822 0.452122 CGCCGTCCATGTCGTTTTTC 60.452 55.000 6.75 0.00 0.00 2.29
1517 1873 1.714460 CAACGACGAGCACTGTAGTTC 59.286 52.381 0.00 0.00 33.72 3.01
1521 1877 0.240411 ACGAGCACTGTAGTTCCGTC 59.760 55.000 0.00 0.00 0.00 4.79
1522 1878 0.240145 CGAGCACTGTAGTTCCGTCA 59.760 55.000 0.00 0.00 0.00 4.35
1554 1910 1.244816 ATGCCAAGCGATGATCCATG 58.755 50.000 0.00 0.00 0.00 3.66
1558 1914 1.598962 AAGCGATGATCCATGCGGG 60.599 57.895 0.00 0.00 38.37 6.13
1629 1985 0.523966 GATACCCTCTCGATCGCTGG 59.476 60.000 11.09 11.64 0.00 4.85
1644 2000 1.216178 CTGGCGAGCCCCAATTTTG 59.784 57.895 12.05 0.00 33.73 2.44
1647 2003 2.578664 CGAGCCCCAATTTTGCCC 59.421 61.111 0.00 0.00 0.00 5.36
1660 2016 1.181786 TTTGCCCCTTTAATCCGCTG 58.818 50.000 0.00 0.00 0.00 5.18
1673 2029 1.519408 TCCGCTGTGCTTTACCTTTC 58.481 50.000 0.00 0.00 0.00 2.62
1724 2080 3.630312 TGTTGGTAGTTTCTTTGACAGCC 59.370 43.478 0.00 0.00 0.00 4.85
1727 2083 2.226674 GGTAGTTTCTTTGACAGCCAGC 59.773 50.000 0.00 0.00 0.00 4.85
1749 2106 0.461693 GCTGAATGAGCGAGCCTCTT 60.462 55.000 0.00 0.00 41.35 2.85
1750 2107 2.011046 GCTGAATGAGCGAGCCTCTTT 61.011 52.381 0.00 0.00 41.35 2.52
1751 2108 2.354259 CTGAATGAGCGAGCCTCTTTT 58.646 47.619 0.00 0.00 41.35 2.27
1752 2109 3.525537 CTGAATGAGCGAGCCTCTTTTA 58.474 45.455 0.00 0.00 41.35 1.52
1753 2110 3.935203 CTGAATGAGCGAGCCTCTTTTAA 59.065 43.478 0.00 0.00 41.35 1.52
1785 2142 0.247185 CCCTGATGGCATTTTGCGTT 59.753 50.000 0.00 0.00 46.21 4.84
1933 2306 6.738649 GCGTGAACTCTATCTTGATTTTGTTC 59.261 38.462 0.00 0.00 34.82 3.18
1947 2320 6.437928 TGATTTTGTTCAATCGAAGGACTTG 58.562 36.000 0.00 0.00 36.13 3.16
1948 2321 4.829064 TTTGTTCAATCGAAGGACTTGG 57.171 40.909 0.00 0.00 0.00 3.61
2179 2565 3.127548 GCTTGGAGCAATTCGATTCTGAA 59.872 43.478 0.00 0.00 41.89 3.02
2180 2566 4.730035 GCTTGGAGCAATTCGATTCTGAAG 60.730 45.833 0.00 0.00 41.89 3.02
2188 2574 6.550371 CAATTCGATTCTGAAGTGAATTGC 57.450 37.500 28.07 3.38 44.37 3.56
2275 2661 1.212751 GCAGGTGGTCAATTTCCGC 59.787 57.895 2.40 2.40 35.03 5.54
2395 2781 2.996734 AGCCCAACCCCAAATGCG 60.997 61.111 0.00 0.00 0.00 4.73
2455 2841 0.531974 AGACGCAGACGCCAAGAAAA 60.532 50.000 0.00 0.00 45.53 2.29
2561 2947 3.741476 CCAGAAACTGCCGCCTGC 61.741 66.667 0.00 0.00 41.77 4.85
2644 3036 0.107459 GGGCTGCTCCTCAGGTAAAG 60.107 60.000 0.00 0.00 43.06 1.85
2658 3050 1.674441 GGTAAAGCCAGCGAATTACCC 59.326 52.381 17.20 6.40 40.79 3.69
2707 3099 7.181569 TGAATTGTCCCCAAAATATTCTTCC 57.818 36.000 0.00 0.00 33.44 3.46
2717 3111 6.183347 CCAAAATATTCTTCCCTGTCTCTGT 58.817 40.000 0.00 0.00 0.00 3.41
2720 3114 2.103153 TTCTTCCCTGTCTCTGTGGT 57.897 50.000 0.00 0.00 0.00 4.16
2721 3115 1.342074 TCTTCCCTGTCTCTGTGGTG 58.658 55.000 0.00 0.00 0.00 4.17
2800 3194 3.062466 GCCTGACCGGAAAAGGGC 61.062 66.667 9.46 10.68 40.61 5.19
2822 3216 4.166011 GACGCTGCCGGCAATGAC 62.166 66.667 32.09 20.95 43.64 3.06
2825 3219 3.869272 GCTGCCGGCAATGACTCG 61.869 66.667 32.09 17.97 41.35 4.18
2925 3319 4.498520 CGCAGATGGGCTCGTCGT 62.499 66.667 0.00 0.00 34.23 4.34
2928 3322 2.437895 AGATGGGCTCGTCGTCGA 60.438 61.111 4.42 4.42 44.12 4.20
2930 3324 3.047718 GATGGGCTCGTCGTCGACA 62.048 63.158 24.13 10.99 41.35 4.35
2931 3325 2.921538 GATGGGCTCGTCGTCGACAG 62.922 65.000 24.13 19.45 41.35 3.51
2933 3327 4.400109 GGCTCGTCGTCGACAGCA 62.400 66.667 31.74 16.00 41.35 4.41
2987 3384 3.299977 CTGTCCCCGTCGGTGTCA 61.300 66.667 11.06 1.70 0.00 3.58
2990 3387 4.289101 TCCCCGTCGGTGTCAGGA 62.289 66.667 11.06 6.31 0.00 3.86
3399 3804 1.031571 CCCACCCATCATTGACACCG 61.032 60.000 0.00 0.00 0.00 4.94
3402 3821 0.984230 ACCCATCATTGACACCGTCT 59.016 50.000 0.00 0.00 33.15 4.18
3408 3827 3.026630 TCATTGACACCGTCTCTGAAC 57.973 47.619 0.00 0.00 33.15 3.18
3413 3832 4.436242 TGACACCGTCTCTGAACTATTC 57.564 45.455 0.00 0.00 33.15 1.75
3414 3833 3.824443 TGACACCGTCTCTGAACTATTCA 59.176 43.478 0.00 0.00 34.32 2.57
3424 3843 6.756074 GTCTCTGAACTATTCACATCTTCAGG 59.244 42.308 6.00 0.00 38.81 3.86
3432 3851 8.121305 ACTATTCACATCTTCAGGCTATCTAG 57.879 38.462 0.00 0.00 0.00 2.43
3434 3853 9.237187 CTATTCACATCTTCAGGCTATCTAGTA 57.763 37.037 0.00 0.00 0.00 1.82
3439 3858 5.915744 TCTTCAGGCTATCTAGTAGGAGT 57.084 43.478 0.00 0.00 0.00 3.85
3440 3859 7.017750 ACATCTTCAGGCTATCTAGTAGGAGTA 59.982 40.741 0.00 0.00 0.00 2.59
3441 3860 7.576978 TCTTCAGGCTATCTAGTAGGAGTAT 57.423 40.000 0.00 0.00 0.00 2.12
3442 3861 8.682297 TCTTCAGGCTATCTAGTAGGAGTATA 57.318 38.462 0.00 0.00 0.00 1.47
3447 3866 7.334921 CAGGCTATCTAGTAGGAGTATACACAC 59.665 44.444 5.50 0.00 0.00 3.82
3449 3868 7.830201 GGCTATCTAGTAGGAGTATACACACAT 59.170 40.741 5.50 0.00 0.00 3.21
3453 3872 9.688091 ATCTAGTAGGAGTATACACACATATGG 57.312 37.037 7.80 0.00 0.00 2.74
3454 3873 8.666821 TCTAGTAGGAGTATACACACATATGGT 58.333 37.037 7.80 0.00 0.00 3.55
3455 3874 9.298250 CTAGTAGGAGTATACACACATATGGTT 57.702 37.037 7.80 0.00 0.00 3.67
3456 3875 8.179509 AGTAGGAGTATACACACATATGGTTC 57.820 38.462 7.80 0.00 0.00 3.62
3457 3876 8.005388 AGTAGGAGTATACACACATATGGTTCT 58.995 37.037 7.80 0.00 0.00 3.01
3458 3877 9.293404 GTAGGAGTATACACACATATGGTTCTA 57.707 37.037 7.80 0.00 0.00 2.10
3460 3879 7.039644 AGGAGTATACACACATATGGTTCTAGC 60.040 40.741 7.80 0.00 0.00 3.42
3461 3880 6.994221 AGTATACACACATATGGTTCTAGCC 58.006 40.000 7.80 0.00 0.00 3.93
3469 3890 2.785357 ATGGTTCTAGCCTCTAGCCT 57.215 50.000 0.00 0.00 45.47 4.58
3471 3892 1.007238 TGGTTCTAGCCTCTAGCCTGT 59.993 52.381 0.00 0.00 45.47 4.00
3485 3906 2.519826 CCTGTTGGCGTGCAATTTG 58.480 52.632 0.00 0.00 0.00 2.32
3505 3926 2.361610 CTTCCGGGGCAGTTGCAT 60.362 61.111 0.00 0.00 44.36 3.96
3512 3933 1.099879 GGGGCAGTTGCATCTAGCTG 61.100 60.000 6.43 8.10 45.94 4.24
3519 3940 5.702670 GGCAGTTGCATCTAGCTGAATTATA 59.297 40.000 6.43 0.00 45.94 0.98
3523 3944 6.994496 AGTTGCATCTAGCTGAATTATAAGCA 59.006 34.615 0.00 0.00 45.94 3.91
3527 3948 6.238049 GCATCTAGCTGAATTATAAGCATCGG 60.238 42.308 0.00 0.00 42.06 4.18
3533 3954 5.915196 GCTGAATTATAAGCATCGGTTTTCC 59.085 40.000 3.10 0.00 39.31 3.13
3535 3956 7.026631 TGAATTATAAGCATCGGTTTTCCTG 57.973 36.000 0.00 0.00 37.95 3.86
3547 3968 3.497262 CGGTTTTCCTGGAACTACTGTTC 59.503 47.826 9.04 0.74 43.43 3.18
3589 4010 4.101741 GGGAGGTTCATTCATAGCTACTGT 59.898 45.833 0.00 0.00 0.00 3.55
3591 4012 5.755861 GGAGGTTCATTCATAGCTACTGTTC 59.244 44.000 0.00 0.00 0.00 3.18
3592 4013 5.352284 AGGTTCATTCATAGCTACTGTTCG 58.648 41.667 0.00 0.00 0.00 3.95
3593 4014 5.105310 AGGTTCATTCATAGCTACTGTTCGT 60.105 40.000 0.00 0.00 0.00 3.85
3594 4015 6.096423 AGGTTCATTCATAGCTACTGTTCGTA 59.904 38.462 0.00 0.00 0.00 3.43
3595 4016 6.924060 GGTTCATTCATAGCTACTGTTCGTAT 59.076 38.462 0.00 0.00 0.00 3.06
3596 4017 7.096023 GGTTCATTCATAGCTACTGTTCGTATG 60.096 40.741 0.00 0.00 0.00 2.39
3613 4056 0.541863 ATGCTGGGTACTGGTAGTGC 59.458 55.000 0.00 0.00 0.00 4.40
3677 4152 1.210155 GCTGGCATGTTGGTTCGTC 59.790 57.895 0.00 0.00 0.00 4.20
3679 4154 0.888736 CTGGCATGTTGGTTCGTCCA 60.889 55.000 0.00 0.00 45.60 4.02
3701 4176 8.962679 GTCCATGGTGATTATACTTTTGGTTTA 58.037 33.333 12.58 0.00 0.00 2.01
3703 4178 9.801873 CCATGGTGATTATACTTTTGGTTTAAG 57.198 33.333 2.57 0.00 0.00 1.85
3739 4214 1.379044 GTTCATGTCCCCTGCCCTG 60.379 63.158 0.00 0.00 0.00 4.45
3781 4259 2.349886 CGAGTTACTTGCTGGATCTTGC 59.650 50.000 0.00 0.00 0.00 4.01
3792 4270 5.182487 TGCTGGATCTTGCGAGTTTAATAA 58.818 37.500 0.00 0.00 0.00 1.40
3848 4345 1.444672 GATACCTACCACGCCCCAC 59.555 63.158 0.00 0.00 0.00 4.61
3934 4466 1.664873 GGGAACGGCCTACTCAAATC 58.335 55.000 0.00 0.00 36.66 2.17
3947 4479 2.034687 AAATCAGCCGTGCCTGCT 59.965 55.556 0.00 0.00 40.41 4.24
3954 4486 3.774528 CCGTGCCTGCTGCCTCTA 61.775 66.667 0.00 0.00 40.16 2.43
3987 4521 5.491982 AGATTAAAGATGGTGGTCTGACAC 58.508 41.667 10.38 6.05 40.60 3.67
4141 4675 2.973420 GCCGTAGCTAGCGAATGTT 58.027 52.632 9.55 0.00 35.50 2.71
4147 4684 4.348656 CGTAGCTAGCGAATGTTGTAGAA 58.651 43.478 9.55 0.00 0.00 2.10
4148 4685 4.976731 CGTAGCTAGCGAATGTTGTAGAAT 59.023 41.667 9.55 0.00 0.00 2.40
4159 4696 7.010552 GCGAATGTTGTAGAATATGAACTGTCT 59.989 37.037 0.00 0.00 0.00 3.41
4189 4728 1.470979 GCTGAACGTATGACCCGTGAT 60.471 52.381 0.00 0.00 38.77 3.06
4199 4738 4.547905 CCCGTGATCGTCCGTCCG 62.548 72.222 0.00 0.00 35.01 4.79
4221 4760 4.803426 GTGAGCCCTGACGCCGAG 62.803 72.222 0.00 0.00 0.00 4.63
4340 4879 4.222847 CCCCGCCGTAAGCTCTCC 62.223 72.222 0.00 0.00 40.39 3.71
4341 4880 4.222847 CCCGCCGTAAGCTCTCCC 62.223 72.222 0.00 0.00 40.39 4.30
4342 4881 3.148279 CCGCCGTAAGCTCTCCCT 61.148 66.667 0.00 0.00 40.39 4.20
4343 4882 2.413765 CGCCGTAAGCTCTCCCTC 59.586 66.667 0.00 0.00 40.39 4.30
4344 4883 2.122167 CGCCGTAAGCTCTCCCTCT 61.122 63.158 0.00 0.00 40.39 3.69
4345 4884 1.737201 GCCGTAAGCTCTCCCTCTC 59.263 63.158 0.00 0.00 38.99 3.20
4346 4885 1.740332 GCCGTAAGCTCTCCCTCTCC 61.740 65.000 0.00 0.00 38.99 3.71
4347 4886 1.110518 CCGTAAGCTCTCCCTCTCCC 61.111 65.000 0.00 0.00 0.00 4.30
4377 4916 3.367743 CCAGCAGTGGCACGCAAT 61.368 61.111 27.16 11.90 44.14 3.56
4391 4930 3.927142 GCACGCAATAGTTCTTCTGTACT 59.073 43.478 0.00 0.00 0.00 2.73
4392 4931 5.100259 GCACGCAATAGTTCTTCTGTACTA 58.900 41.667 0.00 0.00 32.13 1.82
4393 4932 5.004535 GCACGCAATAGTTCTTCTGTACTAC 59.995 44.000 0.00 0.00 30.73 2.73
4426 4965 2.280389 CGCTGATGATGGGGACGG 60.280 66.667 0.00 0.00 0.00 4.79
4443 4982 1.226746 CGGGTTGTCTTTTTCGCTCT 58.773 50.000 0.00 0.00 0.00 4.09
4446 4985 2.814336 GGGTTGTCTTTTTCGCTCTGAT 59.186 45.455 0.00 0.00 0.00 2.90
4447 4986 3.365364 GGGTTGTCTTTTTCGCTCTGATG 60.365 47.826 0.00 0.00 0.00 3.07
4448 4987 3.365364 GGTTGTCTTTTTCGCTCTGATGG 60.365 47.826 0.00 0.00 0.00 3.51
4631 5170 1.742880 CTCATGGACTGGGTGTGCG 60.743 63.158 0.00 0.00 40.08 5.34
4803 5342 3.418684 AACTAGCTTTGTACACAGGGG 57.581 47.619 10.90 0.00 0.00 4.79
4805 5344 2.709397 ACTAGCTTTGTACACAGGGGTT 59.291 45.455 10.90 0.00 0.00 4.11
4808 5347 1.616159 CTTTGTACACAGGGGTTGGG 58.384 55.000 0.00 0.00 35.82 4.12
4822 5371 5.012561 CAGGGGTTGGGTTGAAATGAATAAA 59.987 40.000 0.00 0.00 0.00 1.40
4853 5402 2.983229 TGTGTTTTGCTGCAATTTGGT 58.017 38.095 16.77 0.00 0.00 3.67
4855 5404 2.935201 GTGTTTTGCTGCAATTTGGTCA 59.065 40.909 16.77 6.72 0.00 4.02
4856 5405 3.373439 GTGTTTTGCTGCAATTTGGTCAA 59.627 39.130 16.77 2.52 0.00 3.18
4857 5406 3.373439 TGTTTTGCTGCAATTTGGTCAAC 59.627 39.130 16.77 15.02 0.00 3.18
4865 5414 5.469760 GCTGCAATTTGGTCAACCTTTTTAT 59.530 36.000 0.10 0.00 36.82 1.40
4892 5441 5.295540 GGTGAAGAGGAGAAGAAATATGTGC 59.704 44.000 0.00 0.00 0.00 4.57
4915 5469 2.903357 CATCTACAGCCGGGCACT 59.097 61.111 23.09 7.78 0.00 4.40
4934 5502 2.190841 CCAAACCCGCCTCAAACGT 61.191 57.895 0.00 0.00 0.00 3.99
4938 5506 4.367023 CCCGCCTCAAACGTCCGA 62.367 66.667 0.00 0.00 0.00 4.55
4952 5520 3.719144 CCGAACGAACCAACCGGC 61.719 66.667 0.00 0.00 34.57 6.13
5004 5573 3.876589 GAGCTCAAACGCCCGGACA 62.877 63.158 9.40 0.00 0.00 4.02
5019 5592 0.109342 GGACAGGCACCCCTCATATG 59.891 60.000 0.00 0.00 40.33 1.78
5032 5627 3.698040 CCCTCATATGCAGCCCAAATATC 59.302 47.826 0.00 0.00 0.00 1.63
5047 5642 2.544844 ATATCGGACGGATATGGGGT 57.455 50.000 13.17 0.00 44.76 4.95
5056 5662 2.367648 ATATGGGGTGGCCGGACA 60.368 61.111 5.41 5.41 0.00 4.02
5115 5721 1.293458 TGCCCCACAAATATCCCCATT 59.707 47.619 0.00 0.00 0.00 3.16
5118 5724 2.158534 CCCCACAAATATCCCCATTCGA 60.159 50.000 0.00 0.00 0.00 3.71
5136 5742 3.596214 TCGAAAAACCCTAGATCACAGC 58.404 45.455 0.00 0.00 0.00 4.40
5171 5777 3.141488 CACTCCCCTCTCCGTCCG 61.141 72.222 0.00 0.00 0.00 4.79
5219 5825 1.300931 CGATGGCCGATGACCGAAT 60.301 57.895 0.00 0.00 41.76 3.34
5232 5838 1.135315 CCGAATCAGCGTTGCCTTG 59.865 57.895 0.00 0.00 0.00 3.61
5246 5852 2.440247 CTTGGGTGGGGAATCCGC 60.440 66.667 9.64 9.64 45.12 5.54
5251 5857 3.407967 GTGGGGAATCCGCCTCCA 61.408 66.667 14.02 2.23 44.95 3.86
5253 5859 2.193248 GGGGAATCCGCCTCCAAG 59.807 66.667 4.84 0.00 41.75 3.61
5259 5865 1.338136 AATCCGCCTCCAAGGACGAT 61.338 55.000 10.14 1.78 37.67 3.73
5354 5960 1.676968 TGGTCGACCAAGGTGGATG 59.323 57.895 34.60 0.00 44.35 3.51
5358 5964 1.153369 CGACCAAGGTGGATGCGAT 60.153 57.895 0.18 0.00 40.96 4.58
5384 6005 1.612950 TGGGTAAACTTCGTCAGCGTA 59.387 47.619 0.00 0.00 39.49 4.42
5443 6102 4.176752 CTCCAGGTAAGCCGCCCC 62.177 72.222 0.00 0.00 40.50 5.80
5461 6120 3.569210 CCACCACCACCCTCTGCA 61.569 66.667 0.00 0.00 0.00 4.41
5462 6121 2.759114 CACCACCACCCTCTGCAT 59.241 61.111 0.00 0.00 0.00 3.96
5472 6131 2.202987 CTCTGCATCGGAGGTGGC 60.203 66.667 0.00 0.00 33.57 5.01
5475 6134 4.758251 TGCATCGGAGGTGGCACG 62.758 66.667 12.17 0.00 0.00 5.34
5495 6154 3.785859 GCCATCGCTGGGTCCTCA 61.786 66.667 7.52 0.00 43.36 3.86
5531 6190 4.891727 CCGGCGCGCATTAGGACT 62.892 66.667 34.42 0.00 0.00 3.85
5534 6193 2.107141 GCGCGCATTAGGACTCCT 59.893 61.111 29.10 2.31 37.71 3.69
5538 6197 0.461961 GCGCATTAGGACTCCTGAGT 59.538 55.000 7.98 0.00 45.84 3.41
5563 6222 4.435436 CACGAGCAGCCCGCACTA 62.435 66.667 0.00 0.00 46.13 2.74
5564 6223 4.135153 ACGAGCAGCCCGCACTAG 62.135 66.667 0.00 0.00 46.13 2.57
5565 6224 4.135153 CGAGCAGCCCGCACTAGT 62.135 66.667 0.00 0.00 46.13 2.57
5566 6225 2.510238 GAGCAGCCCGCACTAGTG 60.510 66.667 18.93 18.93 46.13 2.74
5576 6235 4.598257 CACTAGTGCAGAACCGGG 57.402 61.111 10.54 0.00 0.00 5.73
5577 6236 1.741770 CACTAGTGCAGAACCGGGC 60.742 63.158 10.54 0.00 0.00 6.13
5578 6237 2.214216 ACTAGTGCAGAACCGGGCA 61.214 57.895 6.32 1.81 37.77 5.36
5579 6238 1.003839 CTAGTGCAGAACCGGGCAA 60.004 57.895 6.32 0.00 42.45 4.52
5580 6239 0.392998 CTAGTGCAGAACCGGGCAAT 60.393 55.000 6.32 7.58 42.45 3.56
5581 6240 0.906066 TAGTGCAGAACCGGGCAATA 59.094 50.000 6.32 6.43 42.45 1.90
5582 6241 0.392998 AGTGCAGAACCGGGCAATAG 60.393 55.000 6.32 0.00 42.45 1.73
5583 6242 1.748879 TGCAGAACCGGGCAATAGC 60.749 57.895 6.32 2.35 37.03 2.97
5584 6243 1.748879 GCAGAACCGGGCAATAGCA 60.749 57.895 6.32 0.00 44.61 3.49
5585 6244 1.993369 GCAGAACCGGGCAATAGCAC 61.993 60.000 6.32 0.00 44.61 4.40
5586 6245 1.077716 AGAACCGGGCAATAGCACC 60.078 57.895 6.32 0.00 42.77 5.01
5590 6249 2.437716 CGGGCAATAGCACCGGTT 60.438 61.111 2.97 0.00 45.12 4.44
5591 6250 2.469516 CGGGCAATAGCACCGGTTC 61.470 63.158 2.97 0.00 45.12 3.62
5592 6251 2.469516 GGGCAATAGCACCGGTTCG 61.470 63.158 2.97 0.00 44.61 3.95
5593 6252 1.743995 GGCAATAGCACCGGTTCGT 60.744 57.895 2.97 0.00 44.61 3.85
5594 6253 0.460635 GGCAATAGCACCGGTTCGTA 60.461 55.000 2.97 0.00 44.61 3.43
5595 6254 1.361793 GCAATAGCACCGGTTCGTAA 58.638 50.000 2.97 0.00 41.58 3.18
5596 6255 1.326548 GCAATAGCACCGGTTCGTAAG 59.673 52.381 2.97 0.00 41.58 2.34
5597 6256 1.931172 CAATAGCACCGGTTCGTAAGG 59.069 52.381 2.97 0.00 38.47 2.69
5598 6257 0.179092 ATAGCACCGGTTCGTAAGGC 60.179 55.000 2.97 2.83 38.47 4.35
5599 6258 2.229690 TAGCACCGGTTCGTAAGGCC 62.230 60.000 2.97 0.00 38.47 5.19
5600 6259 2.344500 CACCGGTTCGTAAGGCCA 59.656 61.111 2.97 0.00 38.47 5.36
5601 6260 1.078708 CACCGGTTCGTAAGGCCAT 60.079 57.895 2.97 0.00 38.47 4.40
5602 6261 0.176219 CACCGGTTCGTAAGGCCATA 59.824 55.000 2.97 0.00 38.47 2.74
5603 6262 0.903942 ACCGGTTCGTAAGGCCATAA 59.096 50.000 5.01 0.00 38.47 1.90
5604 6263 1.292992 CCGGTTCGTAAGGCCATAAC 58.707 55.000 5.01 1.12 38.47 1.89
5605 6264 1.292992 CGGTTCGTAAGGCCATAACC 58.707 55.000 5.01 9.91 36.95 2.85
5606 6265 1.405797 CGGTTCGTAAGGCCATAACCA 60.406 52.381 18.73 0.00 39.66 3.67
5607 6266 2.285977 GGTTCGTAAGGCCATAACCAG 58.714 52.381 5.01 0.00 39.51 4.00
5608 6267 1.669265 GTTCGTAAGGCCATAACCAGC 59.331 52.381 5.01 0.00 38.47 4.85
5609 6268 0.906066 TCGTAAGGCCATAACCAGCA 59.094 50.000 5.01 0.00 38.47 4.41
5610 6269 1.014352 CGTAAGGCCATAACCAGCAC 58.986 55.000 5.01 0.00 0.00 4.40
5611 6270 1.406887 CGTAAGGCCATAACCAGCACT 60.407 52.381 5.01 0.00 0.00 4.40
5612 6271 2.159014 CGTAAGGCCATAACCAGCACTA 60.159 50.000 5.01 0.00 0.00 2.74
5613 6272 3.680475 CGTAAGGCCATAACCAGCACTAA 60.680 47.826 5.01 0.00 0.00 2.24
5614 6273 3.449746 AAGGCCATAACCAGCACTAAA 57.550 42.857 5.01 0.00 0.00 1.85
5615 6274 3.004752 AGGCCATAACCAGCACTAAAG 57.995 47.619 5.01 0.00 0.00 1.85
5616 6275 2.308866 AGGCCATAACCAGCACTAAAGT 59.691 45.455 5.01 0.00 0.00 2.66
5654 6313 3.882444 CCCCCTTTAGTACCAGTTTAGC 58.118 50.000 0.00 0.00 0.00 3.09
5655 6314 3.264964 CCCCCTTTAGTACCAGTTTAGCA 59.735 47.826 0.00 0.00 0.00 3.49
5656 6315 4.079958 CCCCCTTTAGTACCAGTTTAGCAT 60.080 45.833 0.00 0.00 0.00 3.79
5657 6316 4.881850 CCCCTTTAGTACCAGTTTAGCATG 59.118 45.833 0.00 0.00 0.00 4.06
5658 6317 5.338871 CCCCTTTAGTACCAGTTTAGCATGA 60.339 44.000 0.00 0.00 0.00 3.07
5659 6318 6.177610 CCCTTTAGTACCAGTTTAGCATGAA 58.822 40.000 0.00 0.00 0.00 2.57
5660 6319 6.093633 CCCTTTAGTACCAGTTTAGCATGAAC 59.906 42.308 0.00 0.00 0.00 3.18
5661 6320 6.093633 CCTTTAGTACCAGTTTAGCATGAACC 59.906 42.308 0.00 0.00 0.00 3.62
5662 6321 3.596214 AGTACCAGTTTAGCATGAACCG 58.404 45.455 0.00 0.00 0.00 4.44
5663 6322 1.821216 ACCAGTTTAGCATGAACCGG 58.179 50.000 0.00 0.00 32.14 5.28
5664 6323 1.073284 ACCAGTTTAGCATGAACCGGT 59.927 47.619 0.00 0.00 33.94 5.28
5665 6324 1.468520 CCAGTTTAGCATGAACCGGTG 59.531 52.381 8.52 0.00 0.00 4.94
5666 6325 1.135689 CAGTTTAGCATGAACCGGTGC 60.136 52.381 8.52 6.80 41.57 5.01
5671 6330 3.996825 GCATGAACCGGTGCTAAAG 57.003 52.632 15.35 1.88 38.30 1.85
5672 6331 0.451783 GCATGAACCGGTGCTAAAGG 59.548 55.000 15.35 0.00 38.30 3.11
5673 6332 1.094785 CATGAACCGGTGCTAAAGGG 58.905 55.000 15.35 0.00 0.00 3.95
5674 6333 0.679960 ATGAACCGGTGCTAAAGGGC 60.680 55.000 15.35 0.00 0.00 5.19
5675 6334 1.302993 GAACCGGTGCTAAAGGGCA 60.303 57.895 8.52 0.00 40.15 5.36
5676 6335 0.891904 GAACCGGTGCTAAAGGGCAA 60.892 55.000 8.52 0.00 44.18 4.52
5677 6336 1.176619 AACCGGTGCTAAAGGGCAAC 61.177 55.000 8.52 0.00 45.46 4.17
5690 6349 4.012895 GCAACCACGTGGCACGAG 62.013 66.667 42.65 34.61 46.05 4.18
5691 6350 4.012895 CAACCACGTGGCACGAGC 62.013 66.667 42.65 4.67 46.05 5.03
5720 6379 3.638132 GCCGGGAGCCCTTTAGTA 58.362 61.111 2.18 0.00 34.35 1.82
5721 6380 1.145598 GCCGGGAGCCCTTTAGTAC 59.854 63.158 2.18 0.00 34.35 2.73
5722 6381 1.828081 CCGGGAGCCCTTTAGTACC 59.172 63.158 3.70 0.00 0.00 3.34
5723 6382 1.440476 CGGGAGCCCTTTAGTACCG 59.560 63.158 3.70 0.00 0.00 4.02
5724 6383 1.828081 GGGAGCCCTTTAGTACCGG 59.172 63.158 0.00 0.00 0.00 5.28
5725 6384 0.979709 GGGAGCCCTTTAGTACCGGT 60.980 60.000 13.98 13.98 0.00 5.28
5726 6385 0.907486 GGAGCCCTTTAGTACCGGTT 59.093 55.000 15.04 0.00 0.00 4.44
5727 6386 1.406477 GGAGCCCTTTAGTACCGGTTG 60.406 57.143 15.04 0.00 0.00 3.77
5728 6387 0.616891 AGCCCTTTAGTACCGGTTGG 59.383 55.000 15.04 5.94 42.84 3.77
5747 6406 3.676291 GGTAACACCAACCGGTACTAA 57.324 47.619 8.00 0.00 46.94 2.24
5748 6407 4.001618 GGTAACACCAACCGGTACTAAA 57.998 45.455 8.00 0.00 46.94 1.85
5749 6408 4.384940 GGTAACACCAACCGGTACTAAAA 58.615 43.478 8.00 0.00 46.94 1.52
5750 6409 5.003160 GGTAACACCAACCGGTACTAAAAT 58.997 41.667 8.00 0.00 46.94 1.82
5751 6410 5.106594 GGTAACACCAACCGGTACTAAAATG 60.107 44.000 8.00 0.00 46.94 2.32
5752 6411 4.089408 ACACCAACCGGTACTAAAATGT 57.911 40.909 8.00 2.98 46.94 2.71
5753 6412 4.463070 ACACCAACCGGTACTAAAATGTT 58.537 39.130 8.00 0.00 46.94 2.71
5754 6413 4.888823 ACACCAACCGGTACTAAAATGTTT 59.111 37.500 8.00 0.00 46.94 2.83
5755 6414 5.216648 CACCAACCGGTACTAAAATGTTTG 58.783 41.667 8.00 0.00 46.94 2.93
5756 6415 4.278919 ACCAACCGGTACTAAAATGTTTGG 59.721 41.667 8.00 10.01 46.71 3.28
5757 6416 4.321378 CCAACCGGTACTAAAATGTTTGGG 60.321 45.833 8.00 0.00 0.00 4.12
5758 6417 3.423749 ACCGGTACTAAAATGTTTGGGG 58.576 45.455 4.49 0.00 0.00 4.96
5759 6418 2.756207 CCGGTACTAAAATGTTTGGGGG 59.244 50.000 0.00 0.00 0.00 5.40
5780 6439 6.121776 GGGGGTTTTGGTTTTATGATTTCT 57.878 37.500 0.00 0.00 0.00 2.52
5781 6440 6.539173 GGGGGTTTTGGTTTTATGATTTCTT 58.461 36.000 0.00 0.00 0.00 2.52
5782 6441 7.001674 GGGGGTTTTGGTTTTATGATTTCTTT 58.998 34.615 0.00 0.00 0.00 2.52
5783 6442 7.504238 GGGGGTTTTGGTTTTATGATTTCTTTT 59.496 33.333 0.00 0.00 0.00 2.27
5784 6443 8.908903 GGGGTTTTGGTTTTATGATTTCTTTTT 58.091 29.630 0.00 0.00 0.00 1.94
5785 6444 9.944663 GGGTTTTGGTTTTATGATTTCTTTTTC 57.055 29.630 0.00 0.00 0.00 2.29
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
45 46 3.435327 TCTTTACGCCACATGTGAACATC 59.565 43.478 27.46 9.23 33.61 3.06
47 48 2.805671 CTCTTTACGCCACATGTGAACA 59.194 45.455 27.46 6.37 0.00 3.18
48 49 3.064207 TCTCTTTACGCCACATGTGAAC 58.936 45.455 27.46 16.88 0.00 3.18
75 76 2.042979 AGGGCCCATTACAACAAGACAT 59.957 45.455 27.56 0.00 0.00 3.06
76 77 1.427368 AGGGCCCATTACAACAAGACA 59.573 47.619 27.56 0.00 0.00 3.41
77 78 2.215942 AGGGCCCATTACAACAAGAC 57.784 50.000 27.56 0.00 0.00 3.01
78 79 2.990740 AAGGGCCCATTACAACAAGA 57.009 45.000 27.56 0.00 0.00 3.02
79 80 4.350368 AAAAAGGGCCCATTACAACAAG 57.650 40.909 27.56 0.00 0.00 3.16
110 111 4.388469 TGCACAGAGAAAACAAAGTTTTGC 59.612 37.500 12.08 9.45 41.79 3.68
116 117 4.376340 AACCTGCACAGAGAAAACAAAG 57.624 40.909 0.00 0.00 0.00 2.77
127 128 4.566545 TTGTGATTTGTAACCTGCACAG 57.433 40.909 0.00 0.00 37.53 3.66
160 161 9.053840 TGTTCGGTACTAACATGTAAAATTTCA 57.946 29.630 0.00 0.00 39.10 2.69
161 162 9.321590 GTGTTCGGTACTAACATGTAAAATTTC 57.678 33.333 14.54 0.00 45.44 2.17
162 163 8.838365 TGTGTTCGGTACTAACATGTAAAATTT 58.162 29.630 14.54 0.00 45.44 1.82
176 177 8.879759 CATGAAAACTTATATGTGTTCGGTACT 58.120 33.333 13.99 0.00 37.07 2.73
177 178 8.120465 CCATGAAAACTTATATGTGTTCGGTAC 58.880 37.037 13.99 0.00 37.07 3.34
179 180 6.882140 TCCATGAAAACTTATATGTGTTCGGT 59.118 34.615 13.99 5.75 37.07 4.69
180 181 7.315247 TCCATGAAAACTTATATGTGTTCGG 57.685 36.000 13.99 11.00 37.07 4.30
181 182 9.787532 AAATCCATGAAAACTTATATGTGTTCG 57.212 29.630 13.99 4.35 37.07 3.95
245 255 0.036732 TCCACAGAGCTCGGCATTTT 59.963 50.000 14.20 0.00 0.00 1.82
250 260 1.067250 GAGATCCACAGAGCTCGGC 59.933 63.158 14.20 0.00 44.98 5.54
265 275 2.822215 GGACTTATGGAGGCCGAGA 58.178 57.895 0.00 0.00 45.81 4.04
283 293 1.857318 TTAACAACATGCCGGGTGCG 61.857 55.000 2.18 0.00 45.60 5.34
284 294 0.530288 ATTAACAACATGCCGGGTGC 59.470 50.000 2.18 0.00 41.77 5.01
288 298 4.630894 ACATACATTAACAACATGCCGG 57.369 40.909 0.00 0.00 0.00 6.13
291 301 7.812191 TCTGGAAAACATACATTAACAACATGC 59.188 33.333 0.00 0.00 0.00 4.06
298 308 6.151144 AGTGGCTCTGGAAAACATACATTAAC 59.849 38.462 0.00 0.00 0.00 2.01
299 309 6.245408 AGTGGCTCTGGAAAACATACATTAA 58.755 36.000 0.00 0.00 0.00 1.40
301 311 4.666512 AGTGGCTCTGGAAAACATACATT 58.333 39.130 0.00 0.00 0.00 2.71
303 313 3.788227 AGTGGCTCTGGAAAACATACA 57.212 42.857 0.00 0.00 0.00 2.29
304 314 5.880332 TCAATAGTGGCTCTGGAAAACATAC 59.120 40.000 0.00 0.00 0.00 2.39
313 324 5.183713 TGACATTTTTCAATAGTGGCTCTGG 59.816 40.000 0.00 0.00 0.00 3.86
347 358 6.128282 TGCATTTTCAATAGTCTCTCGGAAAC 60.128 38.462 0.00 0.00 0.00 2.78
357 368 6.500684 TCAGTTCCTGCATTTTCAATAGTC 57.499 37.500 0.00 0.00 0.00 2.59
397 412 2.158608 CGGAAATCTATTCCTGCCCCTT 60.159 50.000 5.75 0.00 36.45 3.95
416 431 5.373222 TGATTTGTAAATATCACCTCCCGG 58.627 41.667 0.00 0.00 0.00 5.73
417 432 6.935741 TTGATTTGTAAATATCACCTCCCG 57.064 37.500 0.00 0.00 30.89 5.14
419 434 7.973944 GTGGTTTGATTTGTAAATATCACCTCC 59.026 37.037 10.34 0.00 30.89 4.30
467 483 7.043192 CGAGTTCAAATGATTTTTGAGCTTTGT 60.043 33.333 15.43 0.00 45.55 2.83
472 488 5.222631 ACCGAGTTCAAATGATTTTTGAGC 58.777 37.500 6.77 6.77 39.30 4.26
490 611 0.526211 TCCGATGAGTTGTGACCGAG 59.474 55.000 0.00 0.00 0.00 4.63
492 613 0.458543 CCTCCGATGAGTTGTGACCG 60.459 60.000 0.00 0.00 36.86 4.79
493 614 0.895530 TCCTCCGATGAGTTGTGACC 59.104 55.000 0.00 0.00 36.86 4.02
515 641 9.107177 TGTACGGTCTGATTTTACAACTTTTTA 57.893 29.630 0.00 0.00 0.00 1.52
530 656 7.555195 TCTCTATTTATTCAGTGTACGGTCTGA 59.445 37.037 9.93 9.93 38.66 3.27
544 670 8.496751 GCACCCTTCGTAAATCTCTATTTATTC 58.503 37.037 0.00 0.00 39.23 1.75
626 753 1.043673 AGCCAGCCCCGTTCTAGTAG 61.044 60.000 0.00 0.00 0.00 2.57
687 942 1.097547 AATTGGGAGATTGCGGCGAG 61.098 55.000 12.98 0.00 0.00 5.03
714 1010 4.329545 ATTGGTGGGCGTGCGTCT 62.330 61.111 0.00 0.00 0.00 4.18
715 1011 3.799755 GATTGGTGGGCGTGCGTC 61.800 66.667 0.00 0.00 0.00 5.19
937 1246 4.742201 TGCGCTGCTCCTTCCGTC 62.742 66.667 9.73 0.00 0.00 4.79
961 1272 1.002868 CTCTGCCAACACCAGGAGG 60.003 63.158 0.00 0.00 42.21 4.30
962 1273 1.002868 CCTCTGCCAACACCAGGAG 60.003 63.158 0.00 0.00 0.00 3.69
963 1274 3.160585 CCTCTGCCAACACCAGGA 58.839 61.111 0.00 0.00 0.00 3.86
987 1298 1.226974 ATTCATCTCCGACGCCGTG 60.227 57.895 0.00 0.00 0.00 4.94
1057 1368 0.905337 AAGAAGCCTACCCTGTCGCT 60.905 55.000 0.00 0.00 0.00 4.93
1127 1453 6.690194 AATCATCTTCCAAATGCTAGTGTC 57.310 37.500 0.00 0.00 0.00 3.67
1128 1454 7.568349 TCTAATCATCTTCCAAATGCTAGTGT 58.432 34.615 0.00 0.00 0.00 3.55
1129 1455 8.442632 TTCTAATCATCTTCCAAATGCTAGTG 57.557 34.615 0.00 0.00 0.00 2.74
1130 1456 9.638176 AATTCTAATCATCTTCCAAATGCTAGT 57.362 29.630 0.00 0.00 0.00 2.57
1131 1457 9.894783 CAATTCTAATCATCTTCCAAATGCTAG 57.105 33.333 0.00 0.00 0.00 3.42
1132 1458 8.355169 GCAATTCTAATCATCTTCCAAATGCTA 58.645 33.333 0.00 0.00 0.00 3.49
1133 1459 7.208080 GCAATTCTAATCATCTTCCAAATGCT 58.792 34.615 0.00 0.00 0.00 3.79
1134 1460 6.143438 CGCAATTCTAATCATCTTCCAAATGC 59.857 38.462 0.00 0.00 0.00 3.56
1143 1469 3.813443 AGGTGCGCAATTCTAATCATCT 58.187 40.909 14.00 0.00 0.00 2.90
1147 1476 4.096732 ACAAAGGTGCGCAATTCTAATC 57.903 40.909 14.00 0.00 0.00 1.75
1162 1491 2.665519 CGCTCAATTCCACGAACAAAGG 60.666 50.000 0.00 0.00 0.00 3.11
1167 1496 1.134694 GGCGCTCAATTCCACGAAC 59.865 57.895 7.64 0.00 0.00 3.95
1213 1544 1.227380 CGAGAGCCCGGAATTCCAG 60.227 63.158 24.09 13.07 35.14 3.86
1217 1548 0.106894 GGAATCGAGAGCCCGGAATT 59.893 55.000 0.73 0.00 0.00 2.17
1218 1549 1.749033 GGAATCGAGAGCCCGGAAT 59.251 57.895 0.73 0.00 0.00 3.01
1226 1582 2.419198 CGGCCAGGGAATCGAGAG 59.581 66.667 2.24 0.00 0.00 3.20
1304 1660 0.454620 CGGAGTTCGAACGACTGAGG 60.455 60.000 21.87 5.56 42.43 3.86
1338 1694 4.788679 AGACCGAAGAGGAAAAAGGAAAA 58.211 39.130 0.00 0.00 45.00 2.29
1434 1790 0.158928 GACGGCGCGAAAGATTATCG 59.841 55.000 12.10 0.00 42.99 2.92
1436 1792 0.179094 TGGACGGCGCGAAAGATTAT 60.179 50.000 12.10 0.00 0.00 1.28
1448 1804 0.452122 CGAAAAACGACATGGACGGC 60.452 55.000 16.32 0.00 45.77 5.68
1485 1841 1.393597 CGTCGTTGTACTCTTCCGCG 61.394 60.000 0.00 0.00 0.00 6.46
1517 1873 1.078709 ATTGCACGAACATCTGACGG 58.921 50.000 0.00 0.00 0.00 4.79
1521 1877 0.522626 TGGCATTGCACGAACATCTG 59.477 50.000 11.39 0.00 0.00 2.90
1522 1878 1.200716 CTTGGCATTGCACGAACATCT 59.799 47.619 11.39 0.00 0.00 2.90
1589 1945 1.977293 AATTCGAGCTGCTCCTCCCC 61.977 60.000 22.97 0.00 0.00 4.81
1629 1985 2.125552 GGCAAAATTGGGGCTCGC 60.126 61.111 0.00 0.00 0.00 5.03
1644 2000 2.004808 GCACAGCGGATTAAAGGGGC 62.005 60.000 0.00 0.00 0.00 5.80
1647 2003 3.181500 GGTAAAGCACAGCGGATTAAAGG 60.181 47.826 0.00 0.00 0.00 3.11
1660 2016 1.132453 GGCCGATGAAAGGTAAAGCAC 59.868 52.381 0.00 0.00 0.00 4.40
1673 2029 0.877649 CGACAGATTCCTGGCCGATG 60.878 60.000 0.00 0.00 45.81 3.84
1744 2101 6.726299 AGGGAAAAGAGGGAAATTAAAAGAGG 59.274 38.462 0.00 0.00 0.00 3.69
1749 2106 6.440328 CCATCAGGGAAAAGAGGGAAATTAAA 59.560 38.462 0.00 0.00 37.90 1.52
1750 2107 5.957774 CCATCAGGGAAAAGAGGGAAATTAA 59.042 40.000 0.00 0.00 37.90 1.40
1751 2108 5.518865 CCATCAGGGAAAAGAGGGAAATTA 58.481 41.667 0.00 0.00 37.90 1.40
1752 2109 4.356436 CCATCAGGGAAAAGAGGGAAATT 58.644 43.478 0.00 0.00 37.90 1.82
1753 2110 3.883318 GCCATCAGGGAAAAGAGGGAAAT 60.883 47.826 0.00 0.00 37.90 2.17
1785 2142 4.477249 TCTGCATCATCATCTGGAGTAGA 58.523 43.478 0.00 0.00 40.37 2.59
1858 2215 2.347322 GCCTCGAGTGGACTCTGCT 61.347 63.158 12.31 0.00 40.75 4.24
1859 2216 2.183046 GCCTCGAGTGGACTCTGC 59.817 66.667 12.31 0.65 40.75 4.26
1915 2287 9.699985 CTTCGATTGAACAAAATCAAGATAGAG 57.300 33.333 0.00 0.00 42.21 2.43
1933 2306 1.672881 GCATCCCAAGTCCTTCGATTG 59.327 52.381 0.00 0.00 0.00 2.67
2158 2543 4.394300 ACTTCAGAATCGAATTGCTCCAAG 59.606 41.667 0.00 0.00 0.00 3.61
2275 2661 0.471617 CCTCCTGGTAGATGCCTTGG 59.528 60.000 0.00 0.00 0.00 3.61
2446 2832 1.574702 CGGGAGTCGGTTTTCTTGGC 61.575 60.000 0.00 0.00 34.75 4.52
2466 2852 4.803426 CGTCCTGGCTCGCCTGAC 62.803 72.222 15.35 15.85 37.23 3.51
2506 2892 0.317479 ACGACAGGTTCTCCTTTCCG 59.683 55.000 0.00 0.00 43.07 4.30
2644 3036 0.676782 ACTGTGGGTAATTCGCTGGC 60.677 55.000 0.00 0.00 0.00 4.85
2672 3064 2.159282 GGGACAATTCATTCAGCTGCTG 60.159 50.000 23.31 23.31 0.00 4.41
2707 3099 0.532862 AAACGCACCACAGAGACAGG 60.533 55.000 0.00 0.00 0.00 4.00
2717 3111 0.040514 CGAATTCAGCAAACGCACCA 60.041 50.000 6.22 0.00 0.00 4.17
2720 3114 0.660005 GCACGAATTCAGCAAACGCA 60.660 50.000 13.33 0.00 0.00 5.24
2721 3115 0.385974 AGCACGAATTCAGCAAACGC 60.386 50.000 18.64 5.05 0.00 4.84
2759 3153 1.029947 TACTGATCGCCTGCTGTCGA 61.030 55.000 0.00 0.00 39.17 4.20
2792 3186 4.103103 GCGTCTGCGGCCCTTTTC 62.103 66.667 0.00 0.00 38.78 2.29
2948 3345 2.047844 TGCTGCTCCTCGTCTTGC 60.048 61.111 0.00 0.00 0.00 4.01
2951 3348 3.768922 GGCTGCTGCTCCTCGTCT 61.769 66.667 15.64 0.00 39.59 4.18
2970 3367 3.282745 CTGACACCGACGGGGACAG 62.283 68.421 29.15 29.15 39.97 3.51
2987 3384 1.818785 GTCCTCCGACGACGATCCT 60.819 63.158 9.28 0.00 42.66 3.24
3134 3534 0.678366 GAGCTCACCTCAGTCTCCGA 60.678 60.000 9.40 0.00 40.45 4.55
3187 3587 3.512329 TCACCGGACAGCAAAATCTAGTA 59.488 43.478 9.46 0.00 0.00 1.82
3188 3588 2.301870 TCACCGGACAGCAAAATCTAGT 59.698 45.455 9.46 0.00 0.00 2.57
3189 3589 2.932614 CTCACCGGACAGCAAAATCTAG 59.067 50.000 9.46 0.00 0.00 2.43
3384 3789 1.208052 AGAGACGGTGTCAATGATGGG 59.792 52.381 8.09 0.00 34.60 4.00
3389 3794 3.032017 AGTTCAGAGACGGTGTCAATG 57.968 47.619 8.09 0.00 34.60 2.82
3399 3804 6.756074 CCTGAAGATGTGAATAGTTCAGAGAC 59.244 42.308 11.11 0.00 44.56 3.36
3402 3821 5.188555 AGCCTGAAGATGTGAATAGTTCAGA 59.811 40.000 11.11 0.00 44.56 3.27
3408 3827 8.121305 ACTAGATAGCCTGAAGATGTGAATAG 57.879 38.462 0.00 0.00 0.00 1.73
3413 3832 6.007076 TCCTACTAGATAGCCTGAAGATGTG 58.993 44.000 0.00 0.00 0.00 3.21
3414 3833 6.183361 ACTCCTACTAGATAGCCTGAAGATGT 60.183 42.308 0.00 0.00 0.00 3.06
3424 3843 8.795842 ATGTGTGTATACTCCTACTAGATAGC 57.204 38.462 4.17 0.00 0.00 2.97
3432 3851 8.179509 AGAACCATATGTGTGTATACTCCTAC 57.820 38.462 4.17 0.00 0.00 3.18
3434 3853 7.039644 GCTAGAACCATATGTGTGTATACTCCT 60.040 40.741 4.17 0.00 0.00 3.69
3439 3858 7.010771 AGAGGCTAGAACCATATGTGTGTATA 58.989 38.462 1.24 0.00 0.00 1.47
3440 3859 5.841237 AGAGGCTAGAACCATATGTGTGTAT 59.159 40.000 1.24 0.00 0.00 2.29
3441 3860 5.208890 AGAGGCTAGAACCATATGTGTGTA 58.791 41.667 1.24 0.00 0.00 2.90
3442 3861 4.033709 AGAGGCTAGAACCATATGTGTGT 58.966 43.478 1.24 0.00 0.00 3.72
3447 3866 4.464069 GGCTAGAGGCTAGAACCATATG 57.536 50.000 5.69 0.00 41.46 1.78
3460 3879 1.448540 CACGCCAACAGGCTAGAGG 60.449 63.158 4.85 0.00 46.50 3.69
3461 3880 2.103042 GCACGCCAACAGGCTAGAG 61.103 63.158 4.85 0.00 46.50 2.43
3469 3890 0.249238 GACCAAATTGCACGCCAACA 60.249 50.000 0.00 0.00 35.99 3.33
3471 3892 0.749649 AAGACCAAATTGCACGCCAA 59.250 45.000 0.00 0.00 37.94 4.52
3485 3906 2.359975 CAACTGCCCCGGAAGACC 60.360 66.667 0.73 0.00 0.00 3.85
3505 3926 6.346477 ACCGATGCTTATAATTCAGCTAGA 57.654 37.500 0.00 0.00 36.92 2.43
3512 3933 6.262273 TCCAGGAAAACCGATGCTTATAATTC 59.738 38.462 0.00 0.00 0.00 2.17
3519 3940 1.886542 GTTCCAGGAAAACCGATGCTT 59.113 47.619 2.45 0.00 0.00 3.91
3523 3944 3.326880 ACAGTAGTTCCAGGAAAACCGAT 59.673 43.478 2.45 0.00 0.00 4.18
3572 3993 6.420903 GCATACGAACAGTAGCTATGAATGAA 59.579 38.462 0.00 0.00 38.94 2.57
3589 4010 1.563924 ACCAGTACCCAGCATACGAA 58.436 50.000 0.00 0.00 0.00 3.85
3591 4012 2.029623 ACTACCAGTACCCAGCATACG 58.970 52.381 0.00 0.00 0.00 3.06
3592 4013 2.483188 GCACTACCAGTACCCAGCATAC 60.483 54.545 0.00 0.00 0.00 2.39
3593 4014 1.760613 GCACTACCAGTACCCAGCATA 59.239 52.381 0.00 0.00 0.00 3.14
3594 4015 0.541863 GCACTACCAGTACCCAGCAT 59.458 55.000 0.00 0.00 0.00 3.79
3595 4016 0.544357 AGCACTACCAGTACCCAGCA 60.544 55.000 0.00 0.00 0.00 4.41
3596 4017 0.613777 AAGCACTACCAGTACCCAGC 59.386 55.000 0.00 0.00 0.00 4.85
3613 4056 1.465354 GCAAGCAAGCATCGTCAGAAG 60.465 52.381 0.00 0.00 0.00 2.85
3655 4105 1.717194 GAACCAACATGCCAGCAATG 58.283 50.000 0.00 0.00 0.00 2.82
3656 4106 0.244450 CGAACCAACATGCCAGCAAT 59.756 50.000 0.00 0.00 0.00 3.56
3657 4107 1.106351 ACGAACCAACATGCCAGCAA 61.106 50.000 0.00 0.00 0.00 3.91
3658 4108 1.514678 GACGAACCAACATGCCAGCA 61.515 55.000 0.00 0.00 0.00 4.41
3659 4109 1.210155 GACGAACCAACATGCCAGC 59.790 57.895 0.00 0.00 0.00 4.85
3677 4152 9.801873 CTTAAACCAAAAGTATAATCACCATGG 57.198 33.333 11.19 11.19 0.00 3.66
3704 4179 9.391006 GGACATGAACCATTTATTTACTCACTA 57.609 33.333 0.00 0.00 0.00 2.74
3705 4180 7.339466 GGGACATGAACCATTTATTTACTCACT 59.661 37.037 0.00 0.00 0.00 3.41
3706 4181 7.416326 GGGGACATGAACCATTTATTTACTCAC 60.416 40.741 0.00 0.00 0.00 3.51
3707 4182 6.605594 GGGGACATGAACCATTTATTTACTCA 59.394 38.462 0.00 0.00 0.00 3.41
3708 4183 6.833933 AGGGGACATGAACCATTTATTTACTC 59.166 38.462 0.00 0.00 0.00 2.59
3739 4214 0.667792 GCCTACTTCCGGCGATGATC 60.668 60.000 9.30 0.00 37.87 2.92
3761 4236 2.349886 CGCAAGATCCAGCAAGTAACTC 59.650 50.000 7.63 0.00 43.02 3.01
3781 4259 7.633361 ACATGGCGTAGTATTATTAAACTCG 57.367 36.000 0.00 0.00 0.00 4.18
3792 4270 2.035961 CCTGCAGTACATGGCGTAGTAT 59.964 50.000 13.81 0.00 32.20 2.12
3848 4345 1.652563 CATCATGGCCACGAGCATG 59.347 57.895 8.16 0.07 46.50 4.06
3860 4357 1.299541 GTGGTACCTTCGGCATCATG 58.700 55.000 14.36 0.00 0.00 3.07
3869 4366 2.675371 GGCAGGGGTGGTACCTTC 59.325 66.667 14.36 6.30 38.64 3.46
3892 4424 0.179034 GCATTGAGGAGGTAGGGCAG 60.179 60.000 0.00 0.00 0.00 4.85
3947 4479 2.231716 TCTTACTGCAGGTAGAGGCA 57.768 50.000 19.93 0.00 38.52 4.75
3948 4480 3.828875 AATCTTACTGCAGGTAGAGGC 57.171 47.619 19.93 0.00 0.00 4.70
3949 4481 7.113658 TCTTTAATCTTACTGCAGGTAGAGG 57.886 40.000 19.93 8.91 0.00 3.69
3954 4486 5.882557 CACCATCTTTAATCTTACTGCAGGT 59.117 40.000 19.93 6.35 0.00 4.00
3987 4521 1.732683 GCAACCAAAATCACGCCCG 60.733 57.895 0.00 0.00 0.00 6.13
3994 4528 0.729140 CGTCGCCTGCAACCAAAATC 60.729 55.000 0.00 0.00 0.00 2.17
3995 4529 1.285641 CGTCGCCTGCAACCAAAAT 59.714 52.632 0.00 0.00 0.00 1.82
4123 4657 0.577269 CAACATTCGCTAGCTACGGC 59.423 55.000 13.93 5.59 39.06 5.68
4141 4675 5.125578 AGCGTCAGACAGTTCATATTCTACA 59.874 40.000 0.41 0.00 0.00 2.74
4147 4684 4.428209 CTTCAGCGTCAGACAGTTCATAT 58.572 43.478 0.41 0.00 0.00 1.78
4148 4685 3.838120 CTTCAGCGTCAGACAGTTCATA 58.162 45.455 0.41 0.00 0.00 2.15
4215 4754 4.778143 CCCTTGGTTCCCTCGGCG 62.778 72.222 0.00 0.00 0.00 6.46
4217 4756 4.778143 CGCCCTTGGTTCCCTCGG 62.778 72.222 0.00 0.00 0.00 4.63
4377 4916 4.878397 GCCGGTAGTAGTACAGAAGAACTA 59.122 45.833 1.90 0.00 0.00 2.24
4409 4948 2.280389 CCGTCCCCATCATCAGCG 60.280 66.667 0.00 0.00 0.00 5.18
4426 4965 3.365364 CCATCAGAGCGAAAAAGACAACC 60.365 47.826 0.00 0.00 0.00 3.77
4438 4977 2.046988 TGCACCACCATCAGAGCG 60.047 61.111 0.00 0.00 0.00 5.03
4443 4982 1.376086 CTCACCTGCACCACCATCA 59.624 57.895 0.00 0.00 0.00 3.07
4446 4985 3.569210 CCCTCACCTGCACCACCA 61.569 66.667 0.00 0.00 0.00 4.17
4447 4986 3.570212 ACCCTCACCTGCACCACC 61.570 66.667 0.00 0.00 0.00 4.61
4448 4987 1.764571 TACACCCTCACCTGCACCAC 61.765 60.000 0.00 0.00 0.00 4.16
4711 5250 1.153686 GAACCGGAACTCGTAGGGC 60.154 63.158 9.46 0.00 37.11 5.19
4763 5302 3.266376 AAACACGACGCACCACCG 61.266 61.111 0.00 0.00 0.00 4.94
4764 5303 1.152989 TACAAACACGACGCACCACC 61.153 55.000 0.00 0.00 0.00 4.61
4765 5304 0.651551 TTACAAACACGACGCACCAC 59.348 50.000 0.00 0.00 0.00 4.16
4766 5305 0.651551 GTTACAAACACGACGCACCA 59.348 50.000 0.00 0.00 0.00 4.17
4805 5344 8.875168 ACCATAAACTTTATTCATTTCAACCCA 58.125 29.630 0.00 0.00 0.00 4.51
4822 5371 4.570369 GCAGCAAAACACAAACCATAAACT 59.430 37.500 0.00 0.00 0.00 2.66
4853 5402 6.003950 CCTCTTCACCAGATAAAAAGGTTGA 58.996 40.000 0.00 0.00 32.15 3.18
4855 5404 6.044404 TCTCCTCTTCACCAGATAAAAAGGTT 59.956 38.462 0.00 0.00 32.15 3.50
4856 5405 5.548056 TCTCCTCTTCACCAGATAAAAAGGT 59.452 40.000 0.00 0.00 35.65 3.50
4857 5406 6.054860 TCTCCTCTTCACCAGATAAAAAGG 57.945 41.667 0.00 0.00 0.00 3.11
4865 5414 6.441924 ACATATTTCTTCTCCTCTTCACCAGA 59.558 38.462 0.00 0.00 0.00 3.86
4892 5441 1.800805 CCCGGCTGTAGATGCTTATG 58.199 55.000 0.00 0.00 0.00 1.90
4915 5469 1.894756 CGTTTGAGGCGGGTTTGGA 60.895 57.895 0.00 0.00 0.00 3.53
4934 5502 2.029369 CCGGTTGGTTCGTTCGGA 59.971 61.111 0.00 0.00 42.94 4.55
4938 5506 2.903350 GTGGCCGGTTGGTTCGTT 60.903 61.111 1.90 0.00 37.67 3.85
4942 5510 0.833949 AATTTTGTGGCCGGTTGGTT 59.166 45.000 1.90 0.00 37.67 3.67
4943 5511 0.833949 AAATTTTGTGGCCGGTTGGT 59.166 45.000 1.90 0.00 37.67 3.67
4946 5514 2.556257 GTCAAAATTTTGTGGCCGGTT 58.444 42.857 25.98 0.00 39.18 4.44
4952 5520 2.493035 GGCTGGGTCAAAATTTTGTGG 58.507 47.619 25.98 15.06 39.18 4.17
4987 5555 3.883744 CTGTCCGGGCGTTTGAGCT 62.884 63.158 0.00 0.00 37.29 4.09
5004 5573 1.842007 CTGCATATGAGGGGTGCCT 59.158 57.895 6.97 0.00 38.06 4.75
5019 5592 1.507141 CCGTCCGATATTTGGGCTGC 61.507 60.000 0.00 0.00 0.00 5.25
5032 5627 2.741092 CCACCCCATATCCGTCCG 59.259 66.667 0.00 0.00 0.00 4.79
5091 5697 0.396974 GGATATTTGTGGGGCAGGCA 60.397 55.000 0.00 0.00 0.00 4.75
5115 5721 3.596214 GCTGTGATCTAGGGTTTTTCGA 58.404 45.455 0.00 0.00 0.00 3.71
5118 5724 3.806949 TGGCTGTGATCTAGGGTTTTT 57.193 42.857 0.00 0.00 0.00 1.94
5136 5742 3.999663 GAGTGAAGTGGAGTTCAGATTGG 59.000 47.826 0.00 0.00 37.12 3.16
5171 5777 1.683319 GGAGGGGATCAAAAGTGGAGC 60.683 57.143 0.00 0.00 0.00 4.70
5219 5825 2.594303 CACCCAAGGCAACGCTGA 60.594 61.111 0.00 0.00 46.39 4.26
5225 5831 1.078347 GATTCCCCACCCAAGGCAA 59.922 57.895 0.00 0.00 0.00 4.52
5232 5838 4.191015 GAGGCGGATTCCCCACCC 62.191 72.222 11.44 1.80 34.14 4.61
5251 5857 3.875865 GGCTTACCCAATCGTCCTT 57.124 52.632 0.00 0.00 0.00 3.36
5284 5890 1.482593 CTCCTCCTCATTACCGTGCTT 59.517 52.381 0.00 0.00 0.00 3.91
5288 5894 1.777941 GACCTCCTCCTCATTACCGT 58.222 55.000 0.00 0.00 0.00 4.83
5292 5898 2.068834 GGACGACCTCCTCCTCATTA 57.931 55.000 0.00 0.00 35.89 1.90
5354 5960 2.311124 AGTTTACCCAGTGCTATCGC 57.689 50.000 0.00 0.00 0.00 4.58
5369 5975 3.339994 TCGCCTACGCTGACGAAGTTT 62.340 52.381 0.00 0.00 43.93 2.66
5443 6102 4.351054 GCAGAGGGTGGTGGTGGG 62.351 72.222 0.00 0.00 0.00 4.61
5513 6172 4.884257 GTCCTAATGCGCGCCGGA 62.884 66.667 30.77 24.31 0.00 5.14
5524 6183 3.090037 CCTCGAAACTCAGGAGTCCTAA 58.910 50.000 12.53 0.00 41.58 2.69
5526 6185 1.551452 CCTCGAAACTCAGGAGTCCT 58.449 55.000 5.62 5.62 41.58 3.85
5531 6190 1.176619 TCGTGCCTCGAAACTCAGGA 61.177 55.000 0.00 0.00 45.98 3.86
5559 6218 1.741770 GCCCGGTTCTGCACTAGTG 60.742 63.158 18.93 18.93 0.00 2.74
5560 6219 1.764571 TTGCCCGGTTCTGCACTAGT 61.765 55.000 0.00 0.00 37.18 2.57
5561 6220 0.392998 ATTGCCCGGTTCTGCACTAG 60.393 55.000 0.00 0.00 37.18 2.57
5562 6221 0.906066 TATTGCCCGGTTCTGCACTA 59.094 50.000 0.00 0.00 37.18 2.74
5563 6222 0.392998 CTATTGCCCGGTTCTGCACT 60.393 55.000 0.00 0.00 37.18 4.40
5564 6223 1.993369 GCTATTGCCCGGTTCTGCAC 61.993 60.000 0.00 0.00 37.18 4.57
5565 6224 1.748879 GCTATTGCCCGGTTCTGCA 60.749 57.895 0.00 0.00 35.27 4.41
5566 6225 1.748879 TGCTATTGCCCGGTTCTGC 60.749 57.895 0.00 0.00 38.71 4.26
5567 6226 1.376609 GGTGCTATTGCCCGGTTCTG 61.377 60.000 0.00 0.00 38.71 3.02
5568 6227 1.077716 GGTGCTATTGCCCGGTTCT 60.078 57.895 0.00 0.00 38.71 3.01
5569 6228 2.469516 CGGTGCTATTGCCCGGTTC 61.470 63.158 16.86 0.00 43.94 3.62
5570 6229 2.437716 CGGTGCTATTGCCCGGTT 60.438 61.111 16.86 0.00 43.94 4.44
5573 6232 2.437716 AACCGGTGCTATTGCCCG 60.438 61.111 8.52 17.41 45.75 6.13
5574 6233 2.469516 CGAACCGGTGCTATTGCCC 61.470 63.158 8.52 0.00 38.71 5.36
5575 6234 0.460635 TACGAACCGGTGCTATTGCC 60.461 55.000 8.52 0.00 38.71 4.52
5576 6235 1.326548 CTTACGAACCGGTGCTATTGC 59.673 52.381 8.52 0.00 40.20 3.56
5577 6236 1.931172 CCTTACGAACCGGTGCTATTG 59.069 52.381 8.52 0.00 0.00 1.90
5578 6237 1.741394 GCCTTACGAACCGGTGCTATT 60.741 52.381 8.52 0.00 0.00 1.73
5579 6238 0.179092 GCCTTACGAACCGGTGCTAT 60.179 55.000 8.52 0.00 0.00 2.97
5580 6239 1.216178 GCCTTACGAACCGGTGCTA 59.784 57.895 8.52 0.00 0.00 3.49
5581 6240 2.047560 GCCTTACGAACCGGTGCT 60.048 61.111 8.52 0.00 0.00 4.40
5582 6241 3.122971 GGCCTTACGAACCGGTGC 61.123 66.667 8.52 4.53 0.00 5.01
5583 6242 0.176219 TATGGCCTTACGAACCGGTG 59.824 55.000 8.52 0.00 0.00 4.94
5584 6243 0.903942 TTATGGCCTTACGAACCGGT 59.096 50.000 0.00 0.00 0.00 5.28
5585 6244 1.292992 GTTATGGCCTTACGAACCGG 58.707 55.000 3.32 0.00 0.00 5.28
5586 6245 1.292992 GGTTATGGCCTTACGAACCG 58.707 55.000 3.32 0.00 30.94 4.44
5587 6246 2.285977 CTGGTTATGGCCTTACGAACC 58.714 52.381 3.32 9.51 40.04 3.62
5588 6247 1.669265 GCTGGTTATGGCCTTACGAAC 59.331 52.381 3.32 0.00 0.00 3.95
5589 6248 1.279558 TGCTGGTTATGGCCTTACGAA 59.720 47.619 3.32 0.00 0.00 3.85
5590 6249 0.906066 TGCTGGTTATGGCCTTACGA 59.094 50.000 3.32 0.00 0.00 3.43
5591 6250 1.014352 GTGCTGGTTATGGCCTTACG 58.986 55.000 3.32 0.00 0.00 3.18
5592 6251 2.420058 AGTGCTGGTTATGGCCTTAC 57.580 50.000 3.32 0.00 0.00 2.34
5593 6252 4.018779 ACTTTAGTGCTGGTTATGGCCTTA 60.019 41.667 3.32 0.00 0.00 2.69
5594 6253 3.245264 ACTTTAGTGCTGGTTATGGCCTT 60.245 43.478 3.32 0.00 0.00 4.35
5595 6254 2.308866 ACTTTAGTGCTGGTTATGGCCT 59.691 45.455 3.32 0.00 0.00 5.19
5596 6255 2.423538 CACTTTAGTGCTGGTTATGGCC 59.576 50.000 0.00 0.00 39.39 5.36
5597 6256 3.764885 CACTTTAGTGCTGGTTATGGC 57.235 47.619 0.00 0.00 39.39 4.40
5633 6292 3.264964 TGCTAAACTGGTACTAAAGGGGG 59.735 47.826 0.00 0.00 0.00 5.40
5634 6293 4.563140 TGCTAAACTGGTACTAAAGGGG 57.437 45.455 0.00 0.00 0.00 4.79
5635 6294 5.741011 TCATGCTAAACTGGTACTAAAGGG 58.259 41.667 0.00 0.00 0.00 3.95
5636 6295 6.093633 GGTTCATGCTAAACTGGTACTAAAGG 59.906 42.308 0.00 0.00 0.00 3.11
5637 6296 6.183360 CGGTTCATGCTAAACTGGTACTAAAG 60.183 42.308 0.00 0.00 30.82 1.85
5638 6297 5.640357 CGGTTCATGCTAAACTGGTACTAAA 59.360 40.000 0.00 0.00 30.82 1.85
5639 6298 5.172934 CGGTTCATGCTAAACTGGTACTAA 58.827 41.667 0.00 0.00 30.82 2.24
5640 6299 4.382254 CCGGTTCATGCTAAACTGGTACTA 60.382 45.833 13.20 0.00 44.69 1.82
5641 6300 3.596214 CGGTTCATGCTAAACTGGTACT 58.404 45.455 0.00 0.00 30.82 2.73
5642 6301 2.676342 CCGGTTCATGCTAAACTGGTAC 59.324 50.000 13.20 0.00 44.69 3.34
5643 6302 2.980568 CCGGTTCATGCTAAACTGGTA 58.019 47.619 13.20 0.00 44.69 3.25
5644 6303 1.821216 CCGGTTCATGCTAAACTGGT 58.179 50.000 13.20 0.00 44.69 4.00
5646 6305 1.135689 GCACCGGTTCATGCTAAACTG 60.136 52.381 2.97 0.00 38.84 3.16
5647 6306 1.165270 GCACCGGTTCATGCTAAACT 58.835 50.000 2.97 0.00 38.84 2.66
5648 6307 3.694889 GCACCGGTTCATGCTAAAC 57.305 52.632 2.97 0.00 38.84 2.01
5653 6312 0.451783 CCTTTAGCACCGGTTCATGC 59.548 55.000 2.97 5.25 42.39 4.06
5654 6313 1.094785 CCCTTTAGCACCGGTTCATG 58.905 55.000 2.97 0.00 0.00 3.07
5655 6314 0.679960 GCCCTTTAGCACCGGTTCAT 60.680 55.000 2.97 0.00 0.00 2.57
5656 6315 1.302993 GCCCTTTAGCACCGGTTCA 60.303 57.895 2.97 0.00 0.00 3.18
5657 6316 0.891904 TTGCCCTTTAGCACCGGTTC 60.892 55.000 2.97 0.00 43.97 3.62
5658 6317 1.151908 TTGCCCTTTAGCACCGGTT 59.848 52.632 2.97 0.00 43.97 4.44
5659 6318 1.602605 GTTGCCCTTTAGCACCGGT 60.603 57.895 0.00 0.00 43.97 5.28
5660 6319 2.340328 GGTTGCCCTTTAGCACCGG 61.340 63.158 0.00 0.00 43.97 5.28
5661 6320 1.602323 TGGTTGCCCTTTAGCACCG 60.602 57.895 0.00 0.00 43.97 4.94
5662 6321 1.862602 CGTGGTTGCCCTTTAGCACC 61.863 60.000 0.00 0.00 43.97 5.01
5663 6322 1.170290 ACGTGGTTGCCCTTTAGCAC 61.170 55.000 0.00 0.00 43.97 4.40
5664 6323 1.149627 ACGTGGTTGCCCTTTAGCA 59.850 52.632 0.00 0.00 42.17 3.49
5665 6324 1.579429 CACGTGGTTGCCCTTTAGC 59.421 57.895 7.95 0.00 0.00 3.09
5666 6325 1.862602 GCCACGTGGTTGCCCTTTAG 61.863 60.000 33.92 6.07 37.57 1.85
5667 6326 1.899534 GCCACGTGGTTGCCCTTTA 60.900 57.895 33.92 0.00 37.57 1.85
5668 6327 3.223589 GCCACGTGGTTGCCCTTT 61.224 61.111 33.92 0.00 37.57 3.11
5669 6328 4.514585 TGCCACGTGGTTGCCCTT 62.515 61.111 33.92 0.00 37.57 3.95
5673 6332 4.012895 CTCGTGCCACGTGGTTGC 62.013 66.667 33.92 20.95 43.14 4.17
5674 6333 4.012895 GCTCGTGCCACGTGGTTG 62.013 66.667 33.92 23.28 43.14 3.77
5703 6362 1.145598 GTACTAAAGGGCTCCCGGC 59.854 63.158 0.00 0.00 41.95 6.13
5704 6363 1.828081 GGTACTAAAGGGCTCCCGG 59.172 63.158 0.00 0.00 41.95 5.73
5705 6364 1.440476 CGGTACTAAAGGGCTCCCG 59.560 63.158 0.00 0.00 41.95 5.14
5706 6365 0.979709 ACCGGTACTAAAGGGCTCCC 60.980 60.000 4.49 0.00 0.00 4.30
5707 6366 0.907486 AACCGGTACTAAAGGGCTCC 59.093 55.000 8.00 0.00 0.00 4.70
5708 6367 1.406477 CCAACCGGTACTAAAGGGCTC 60.406 57.143 8.00 0.00 0.00 4.70
5709 6368 0.616891 CCAACCGGTACTAAAGGGCT 59.383 55.000 8.00 0.00 0.00 5.19
5710 6369 0.325933 ACCAACCGGTACTAAAGGGC 59.674 55.000 8.00 0.00 46.71 5.19
5734 6393 4.321378 CCCAAACATTTTAGTACCGGTTGG 60.321 45.833 15.04 9.73 42.84 3.77
5735 6394 4.321378 CCCCAAACATTTTAGTACCGGTTG 60.321 45.833 15.04 5.32 0.00 3.77
5736 6395 3.827876 CCCCAAACATTTTAGTACCGGTT 59.172 43.478 15.04 0.00 0.00 4.44
5737 6396 3.423749 CCCCAAACATTTTAGTACCGGT 58.576 45.455 13.98 13.98 0.00 5.28
5738 6397 2.756207 CCCCCAAACATTTTAGTACCGG 59.244 50.000 0.00 0.00 0.00 5.28
5757 6416 6.121776 AGAAATCATAAAACCAAAACCCCC 57.878 37.500 0.00 0.00 0.00 5.40
5758 6417 8.458573 AAAAGAAATCATAAAACCAAAACCCC 57.541 30.769 0.00 0.00 0.00 4.95
5759 6418 9.944663 GAAAAAGAAATCATAAAACCAAAACCC 57.055 29.630 0.00 0.00 0.00 4.11


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.