Multiple sequence alignment - TraesCS5A01G245000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G245000 chr5A 100.000 3993 0 0 1 3993 458563381 458559389 0.000000e+00 7374.0
1 TraesCS5A01G245000 chr5A 84.898 1225 128 24 989 2186 458525345 458524151 0.000000e+00 1184.0
2 TraesCS5A01G245000 chr5A 88.889 351 27 10 2630 2968 458523161 458522811 4.770000e-114 422.0
3 TraesCS5A01G245000 chr5D 95.005 2783 111 14 662 3424 357397202 357394428 0.000000e+00 4344.0
4 TraesCS5A01G245000 chr5D 83.924 1468 161 50 989 2408 357371991 357370551 0.000000e+00 1334.0
5 TraesCS5A01G245000 chr5D 83.333 1458 165 40 989 2409 357159940 357158524 0.000000e+00 1275.0
6 TraesCS5A01G245000 chr5D 82.983 523 50 21 2480 2968 357370380 357369863 1.700000e-118 436.0
7 TraesCS5A01G245000 chr5D 88.669 353 26 10 2630 2968 357158176 357157824 6.170000e-113 418.0
8 TraesCS5A01G245000 chr5D 85.612 278 33 5 192 464 357397924 357397649 6.530000e-73 285.0
9 TraesCS5A01G245000 chr5D 90.789 152 14 0 459 610 357397465 357397314 1.880000e-48 204.0
10 TraesCS5A01G245000 chr5B 90.968 2801 183 32 663 3423 422041228 422038458 0.000000e+00 3707.0
11 TraesCS5A01G245000 chr5B 89.549 909 78 8 989 1894 421998684 421997790 0.000000e+00 1136.0
12 TraesCS5A01G245000 chr5B 86.743 611 70 5 12 615 422041936 422041330 0.000000e+00 669.0
13 TraesCS5A01G245000 chr5B 80.931 666 95 22 1153 1800 421861627 421860976 7.710000e-137 497.0
14 TraesCS5A01G245000 chr5B 97.048 271 6 2 3416 3685 355210601 355210870 4.700000e-124 455.0
15 TraesCS5A01G245000 chr5B 97.727 264 5 1 3422 3684 531548401 531548138 1.690000e-123 453.0
16 TraesCS5A01G245000 chr5B 87.853 354 28 9 2630 2968 421996941 421996588 6.220000e-108 401.0
17 TraesCS5A01G245000 chr5B 78.042 337 57 13 2087 2409 421997609 421997276 3.150000e-46 196.0
18 TraesCS5A01G245000 chr3B 82.605 1213 156 38 996 2171 148500309 148499115 0.000000e+00 1020.0
19 TraesCS5A01G245000 chr3B 79.765 766 108 28 2269 3000 148499043 148498291 2.750000e-141 512.0
20 TraesCS5A01G245000 chr3A 81.496 1297 151 58 941 2171 115849822 115848549 0.000000e+00 983.0
21 TraesCS5A01G245000 chr3A 95.238 42 2 0 705 746 115849979 115849938 2.580000e-07 67.6
22 TraesCS5A01G245000 chr4B 97.736 265 5 1 3422 3685 645456519 645456783 4.700000e-124 455.0
23 TraesCS5A01G245000 chr1B 97.048 271 7 1 3421 3690 358061737 358062007 4.700000e-124 455.0
24 TraesCS5A01G245000 chr1B 97.727 264 5 1 3422 3684 570480431 570480168 1.690000e-123 453.0
25 TraesCS5A01G245000 chr1B 95.423 284 9 3 3405 3684 411449388 411449671 2.190000e-122 449.0
26 TraesCS5A01G245000 chr1B 86.420 81 10 1 3687 3767 286769286 286769207 1.980000e-13 87.9
27 TraesCS5A01G245000 chr6B 97.026 269 6 2 3421 3688 680931101 680930834 6.090000e-123 451.0
28 TraesCS5A01G245000 chr4A 97.026 269 6 2 3421 3688 624892769 624892502 6.090000e-123 451.0
29 TraesCS5A01G245000 chr7B 96.350 274 9 1 3419 3691 296755060 296754787 2.190000e-122 449.0
30 TraesCS5A01G245000 chr4D 86.585 82 10 1 3686 3767 167721631 167721711 5.500000e-14 89.8
31 TraesCS5A01G245000 chr7A 86.585 82 8 3 3687 3767 113803586 113803507 1.980000e-13 87.9
32 TraesCS5A01G245000 chr2A 87.179 78 9 1 3686 3763 639521220 639521296 1.980000e-13 87.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G245000 chr5A 458559389 458563381 3992 True 7374.000000 7374 100.000000 1 3993 1 chr5A.!!$R1 3992
1 TraesCS5A01G245000 chr5A 458522811 458525345 2534 True 803.000000 1184 86.893500 989 2968 2 chr5A.!!$R2 1979
2 TraesCS5A01G245000 chr5D 357394428 357397924 3496 True 1611.000000 4344 90.468667 192 3424 3 chr5D.!!$R3 3232
3 TraesCS5A01G245000 chr5D 357369863 357371991 2128 True 885.000000 1334 83.453500 989 2968 2 chr5D.!!$R2 1979
4 TraesCS5A01G245000 chr5D 357157824 357159940 2116 True 846.500000 1275 86.001000 989 2968 2 chr5D.!!$R1 1979
5 TraesCS5A01G245000 chr5B 422038458 422041936 3478 True 2188.000000 3707 88.855500 12 3423 2 chr5B.!!$R4 3411
6 TraesCS5A01G245000 chr5B 421996588 421998684 2096 True 577.666667 1136 85.148000 989 2968 3 chr5B.!!$R3 1979
7 TraesCS5A01G245000 chr5B 421860976 421861627 651 True 497.000000 497 80.931000 1153 1800 1 chr5B.!!$R1 647
8 TraesCS5A01G245000 chr3B 148498291 148500309 2018 True 766.000000 1020 81.185000 996 3000 2 chr3B.!!$R1 2004
9 TraesCS5A01G245000 chr3A 115848549 115849979 1430 True 525.300000 983 88.367000 705 2171 2 chr3A.!!$R1 1466

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
138 140 0.175073 AAGCGATCCGGGTCTGTTAC 59.825 55.0 14.05 0.0 0.0 2.50 F
141 143 0.666913 CGATCCGGGTCTGTTACGAT 59.333 55.0 14.05 0.0 0.0 3.73 F
1514 1802 0.108520 CATGCCTGGAACAATGGTGC 60.109 55.0 0.00 0.0 38.7 5.01 F
1541 1829 0.108281 GCGGACCCTCTCTTACAACC 60.108 60.0 0.00 0.0 0.0 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1028 1310 0.736636 TACGATCGCCAGTACCACTG 59.263 55.0 16.60 0.00 45.53 3.66 R
1541 1829 0.928922 GAGATCACAGCGTGCATGAG 59.071 55.0 10.93 3.52 32.98 2.90 R
2445 3274 0.537371 GACAGAACAAGGTGGGGGTG 60.537 60.0 0.00 0.00 0.00 4.61 R
3268 4357 0.622136 ATTGAGCAGACAGATGGGCA 59.378 50.0 0.00 0.00 0.00 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 4.589908 ACTAGCCAAGTCCAACCAATAAG 58.410 43.478 0.00 0.00 30.33 1.73
32 33 2.094545 GCCAAGTCCAACCAATAAGCAG 60.095 50.000 0.00 0.00 0.00 4.24
45 46 6.581712 ACCAATAAGCAGCAAAGAAGAAAAA 58.418 32.000 0.00 0.00 0.00 1.94
74 75 1.914634 ACTACAATGAGCGAGCGAAG 58.085 50.000 0.00 0.00 0.00 3.79
80 81 1.808411 ATGAGCGAGCGAAGGAAAAA 58.192 45.000 0.00 0.00 0.00 1.94
89 90 3.977427 AGCGAAGGAAAAACATGGAAAC 58.023 40.909 0.00 0.00 0.00 2.78
130 132 1.586154 AAGCAACAAAGCGATCCGGG 61.586 55.000 0.00 0.00 40.15 5.73
132 134 1.794222 CAACAAAGCGATCCGGGTC 59.206 57.895 4.00 4.00 0.00 4.46
138 140 0.175073 AAGCGATCCGGGTCTGTTAC 59.825 55.000 14.05 0.00 0.00 2.50
141 143 0.666913 CGATCCGGGTCTGTTACGAT 59.333 55.000 14.05 0.00 0.00 3.73
142 144 1.599667 CGATCCGGGTCTGTTACGATG 60.600 57.143 14.05 0.00 0.00 3.84
160 162 3.307762 CGATGGGGGAGAAAAACTCTTCT 60.308 47.826 0.00 0.00 44.37 2.85
161 163 4.081087 CGATGGGGGAGAAAAACTCTTCTA 60.081 45.833 0.00 0.00 44.37 2.10
167 169 4.932799 GGGAGAAAAACTCTTCTAGTGAGC 59.067 45.833 12.90 0.00 44.37 4.26
171 173 3.859411 AAACTCTTCTAGTGAGCCGAG 57.141 47.619 12.90 0.00 38.88 4.63
183 185 1.003118 TGAGCCGAGCTAACATTTGGT 59.997 47.619 0.00 0.00 39.88 3.67
186 188 3.877508 GAGCCGAGCTAACATTTGGTATT 59.122 43.478 0.00 0.00 39.88 1.89
190 192 5.296035 GCCGAGCTAACATTTGGTATTAAGT 59.704 40.000 0.00 0.00 0.00 2.24
212 214 4.035091 GTGAGATATAGCTCTCGCGATCAT 59.965 45.833 18.30 1.20 43.84 2.45
265 267 2.454538 CTACACGGGGTATAGGGATCC 58.545 57.143 1.92 1.92 0.00 3.36
288 290 3.243002 CGAGGGATACGGTCTTGTACTTC 60.243 52.174 0.00 0.00 37.60 3.01
307 309 5.701224 ACTTCCAGTGTCCTTATTTCCAAA 58.299 37.500 0.00 0.00 0.00 3.28
337 342 5.172687 TGACACATATTTTGGCTAGTCCA 57.827 39.130 2.19 2.19 44.85 4.02
381 386 5.246883 TCTGTATAGGTGATGATGGTCCATG 59.753 44.000 9.76 0.00 0.00 3.66
401 406 6.543465 TCCATGAAGTATGAACCATGATTCAC 59.457 38.462 4.11 0.00 41.29 3.18
425 430 9.250246 CACAATTTAAAAAGAATACCCCCTCTA 57.750 33.333 0.00 0.00 0.00 2.43
437 442 8.065007 AGAATACCCCCTCTATTTTTATTTGCA 58.935 33.333 0.00 0.00 0.00 4.08
440 445 4.714308 CCCCCTCTATTTTTATTTGCACCA 59.286 41.667 0.00 0.00 0.00 4.17
464 659 7.235777 CACATTTTGGTTTGTTTTGAGTCAAG 58.764 34.615 5.56 0.00 0.00 3.02
465 660 6.934083 ACATTTTGGTTTGTTTTGAGTCAAGT 59.066 30.769 5.56 0.00 0.00 3.16
534 732 9.438291 CAAATCAATACTTTCGGATGTATCAAC 57.562 33.333 2.90 0.00 0.00 3.18
541 739 7.639162 ACTTTCGGATGTATCAACGAATATC 57.361 36.000 11.18 0.00 43.67 1.63
552 750 5.524511 TCAACGAATATCTTTTCACACCG 57.475 39.130 0.00 0.00 0.00 4.94
827 1099 8.930760 GGAACGAAAATGATCTCTGGAATATAG 58.069 37.037 0.00 0.00 0.00 1.31
856 1128 5.268118 TGAGCTCAGTCAAACATCGATAT 57.732 39.130 13.74 0.00 0.00 1.63
891 1163 5.888724 TCTTGGAATGCCCGAAATACATAAA 59.111 36.000 0.00 0.00 37.93 1.40
893 1165 5.197451 TGGAATGCCCGAAATACATAAACT 58.803 37.500 0.00 0.00 37.93 2.66
1028 1310 1.415374 CATACCATGTACTACGCGGC 58.585 55.000 12.47 0.00 0.00 6.53
1514 1802 0.108520 CATGCCTGGAACAATGGTGC 60.109 55.000 0.00 0.00 38.70 5.01
1541 1829 0.108281 GCGGACCCTCTCTTACAACC 60.108 60.000 0.00 0.00 0.00 3.77
1901 2295 4.252878 TGCGAGCTTTGATCTGACATAAA 58.747 39.130 0.00 0.00 0.00 1.40
2261 3045 6.476706 TGATCGATTGTAGTGCTGATTAGTTG 59.523 38.462 0.00 0.00 0.00 3.16
2318 3119 2.357517 CATCGGGGCCTACATCGC 60.358 66.667 0.84 0.00 0.00 4.58
2331 3132 0.178068 ACATCGCCGCCTACTTCAAT 59.822 50.000 0.00 0.00 0.00 2.57
2445 3274 7.880195 AGCATATATATTTCCAGCCGGATATTC 59.120 37.037 5.05 0.00 42.41 1.75
2447 3276 8.993121 CATATATATTTCCAGCCGGATATTCAC 58.007 37.037 5.05 0.00 42.41 3.18
2759 3792 1.541310 CCCCTGACAGCGAGGTAACA 61.541 60.000 0.00 0.00 41.41 2.41
2777 3824 9.953565 GAGGTAACAATATATGCAATAACCCTA 57.046 33.333 0.00 0.00 41.41 3.53
2827 3899 6.605194 TGTGCTAACTGAATTATGGCCAAATA 59.395 34.615 10.96 0.00 0.00 1.40
3020 4096 3.708210 CCAGTCCTGGCGGTTCTA 58.292 61.111 0.00 0.00 44.73 2.10
3021 4097 2.212327 CCAGTCCTGGCGGTTCTAT 58.788 57.895 0.00 0.00 44.73 1.98
3134 4216 9.396022 TGGAGTTCTTTGTAAGATGATTTATCC 57.604 33.333 0.00 0.00 37.38 2.59
3135 4217 9.396022 GGAGTTCTTTGTAAGATGATTTATCCA 57.604 33.333 0.00 0.00 37.38 3.41
3149 4231 6.910191 TGATTTATCCATCCACCTTGTGTAT 58.090 36.000 0.00 0.00 0.00 2.29
3184 4267 0.037975 TTAGGGACACGCCGTTCTTC 60.038 55.000 0.00 0.00 37.63 2.87
3229 4318 6.849085 ATGTCTTTTTGTGGGTGCATTATA 57.151 33.333 0.00 0.00 0.00 0.98
3239 4328 5.890985 TGTGGGTGCATTATACTTTGCTTAT 59.109 36.000 0.00 0.00 39.60 1.73
3241 4330 5.238432 TGGGTGCATTATACTTTGCTTATCG 59.762 40.000 0.00 0.00 39.60 2.92
3284 4373 0.179702 TCATGCCCATCTGTCTGCTC 59.820 55.000 0.00 0.00 0.00 4.26
3321 4410 4.822896 AGATACTGACTAAGGTTCTAGCCG 59.177 45.833 0.00 0.00 0.00 5.52
3335 4424 4.160642 TCTAGCCGACATGTTAGGTCTA 57.839 45.455 18.61 17.38 33.11 2.59
3352 4441 9.589111 GTTAGGTCTAATTATAAGCTCTATGGC 57.411 37.037 0.00 0.00 0.00 4.40
3370 4459 3.384168 TGGCTATTGATACCCAGACTGT 58.616 45.455 0.93 0.00 0.00 3.55
3414 4503 3.586470 TGGAAGGAGTTTTGGTGCTTA 57.414 42.857 0.00 0.00 0.00 3.09
3415 4504 4.112634 TGGAAGGAGTTTTGGTGCTTAT 57.887 40.909 0.00 0.00 0.00 1.73
3424 4513 6.599638 GGAGTTTTGGTGCTTATTGAGATACT 59.400 38.462 0.00 0.00 0.00 2.12
3425 4514 7.201652 GGAGTTTTGGTGCTTATTGAGATACTC 60.202 40.741 0.00 0.00 0.00 2.59
3426 4515 6.599638 AGTTTTGGTGCTTATTGAGATACTCC 59.400 38.462 0.00 0.00 0.00 3.85
3427 4516 4.689612 TGGTGCTTATTGAGATACTCCC 57.310 45.455 0.00 0.00 0.00 4.30
3428 4517 4.298626 TGGTGCTTATTGAGATACTCCCT 58.701 43.478 0.00 0.00 0.00 4.20
3429 4518 4.345257 TGGTGCTTATTGAGATACTCCCTC 59.655 45.833 0.00 0.00 0.00 4.30
3430 4519 4.262678 GGTGCTTATTGAGATACTCCCTCC 60.263 50.000 0.00 0.00 0.00 4.30
3431 4520 3.574396 TGCTTATTGAGATACTCCCTCCG 59.426 47.826 0.00 0.00 0.00 4.63
3432 4521 3.574826 GCTTATTGAGATACTCCCTCCGT 59.425 47.826 0.00 0.00 0.00 4.69
3433 4522 4.321378 GCTTATTGAGATACTCCCTCCGTC 60.321 50.000 0.00 0.00 0.00 4.79
3434 4523 2.068834 TTGAGATACTCCCTCCGTCC 57.931 55.000 0.00 0.00 0.00 4.79
3435 4524 1.223501 TGAGATACTCCCTCCGTCCT 58.776 55.000 0.00 0.00 0.00 3.85
3436 4525 1.569548 TGAGATACTCCCTCCGTCCTT 59.430 52.381 0.00 0.00 0.00 3.36
3437 4526 2.024273 TGAGATACTCCCTCCGTCCTTT 60.024 50.000 0.00 0.00 0.00 3.11
3438 4527 3.203710 TGAGATACTCCCTCCGTCCTTTA 59.796 47.826 0.00 0.00 0.00 1.85
3439 4528 4.213513 GAGATACTCCCTCCGTCCTTTAA 58.786 47.826 0.00 0.00 0.00 1.52
3440 4529 4.617593 AGATACTCCCTCCGTCCTTTAAA 58.382 43.478 0.00 0.00 0.00 1.52
3441 4530 4.650131 AGATACTCCCTCCGTCCTTTAAAG 59.350 45.833 8.32 8.32 0.00 1.85
3442 4531 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
3443 4532 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
3444 4533 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
3445 4534 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
3446 4535 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
3447 4536 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
3448 4537 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
3449 4538 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
3450 4539 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
3451 4540 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
3452 4541 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
3453 4542 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
3454 4543 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
3455 4544 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
3456 4545 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
3457 4546 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
3458 4547 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
3459 4548 8.129211 CCTTTAAAGAGTGTACTTCCAACTTTG 58.871 37.037 16.98 0.00 31.02 2.77
3460 4549 8.570068 TTTAAAGAGTGTACTTCCAACTTTGT 57.430 30.769 0.00 0.00 31.02 2.83
3461 4550 8.570068 TTAAAGAGTGTACTTCCAACTTTGTT 57.430 30.769 0.00 0.00 31.02 2.83
3462 4551 6.436843 AAGAGTGTACTTCCAACTTTGTTG 57.563 37.500 3.69 3.69 0.00 3.33
3463 4552 4.881850 AGAGTGTACTTCCAACTTTGTTGG 59.118 41.667 19.97 19.97 40.87 3.77
3464 4553 4.850680 AGTGTACTTCCAACTTTGTTGGA 58.149 39.130 23.38 23.38 46.08 3.53
3469 4558 2.358322 TCCAACTTTGTTGGAGGGTC 57.642 50.000 23.38 0.00 43.17 4.46
3470 4559 1.566703 TCCAACTTTGTTGGAGGGTCA 59.433 47.619 23.38 5.39 43.17 4.02
3471 4560 2.024846 TCCAACTTTGTTGGAGGGTCAA 60.025 45.455 23.38 4.76 43.17 3.18
3472 4561 2.763448 CCAACTTTGTTGGAGGGTCAAA 59.237 45.455 21.06 0.00 42.06 2.69
3473 4562 3.430236 CCAACTTTGTTGGAGGGTCAAAC 60.430 47.826 21.06 0.00 42.06 2.93
3474 4563 3.382083 ACTTTGTTGGAGGGTCAAACT 57.618 42.857 0.00 0.00 0.00 2.66
3475 4564 4.513406 ACTTTGTTGGAGGGTCAAACTA 57.487 40.909 0.00 0.00 0.00 2.24
3476 4565 5.061721 ACTTTGTTGGAGGGTCAAACTAT 57.938 39.130 0.00 0.00 0.00 2.12
3477 4566 5.454966 ACTTTGTTGGAGGGTCAAACTATT 58.545 37.500 0.00 0.00 0.00 1.73
3478 4567 5.897250 ACTTTGTTGGAGGGTCAAACTATTT 59.103 36.000 0.00 0.00 0.00 1.40
3479 4568 6.040504 ACTTTGTTGGAGGGTCAAACTATTTC 59.959 38.462 0.00 0.00 0.00 2.17
3480 4569 5.055265 TGTTGGAGGGTCAAACTATTTCA 57.945 39.130 0.00 0.00 0.00 2.69
3481 4570 5.450453 TGTTGGAGGGTCAAACTATTTCAA 58.550 37.500 0.00 0.00 0.00 2.69
3482 4571 5.894393 TGTTGGAGGGTCAAACTATTTCAAA 59.106 36.000 0.00 0.00 0.00 2.69
3483 4572 6.381420 TGTTGGAGGGTCAAACTATTTCAAAA 59.619 34.615 0.00 0.00 0.00 2.44
3484 4573 7.070571 TGTTGGAGGGTCAAACTATTTCAAAAT 59.929 33.333 0.00 0.00 0.00 1.82
3485 4574 7.610580 TGGAGGGTCAAACTATTTCAAAATT 57.389 32.000 0.00 0.00 0.00 1.82
3486 4575 8.028652 TGGAGGGTCAAACTATTTCAAAATTT 57.971 30.769 0.00 0.00 0.00 1.82
3487 4576 7.930865 TGGAGGGTCAAACTATTTCAAAATTTG 59.069 33.333 0.00 0.00 0.00 2.32
3488 4577 8.147704 GGAGGGTCAAACTATTTCAAAATTTGA 58.852 33.333 4.03 4.03 38.04 2.69
3489 4578 8.887036 AGGGTCAAACTATTTCAAAATTTGAC 57.113 30.769 19.94 19.94 40.01 3.18
3491 4580 7.783209 GGTCAAACTATTTCAAAATTTGACCG 58.217 34.615 25.92 0.30 44.86 4.79
3492 4581 7.650104 GGTCAAACTATTTCAAAATTTGACCGA 59.350 33.333 25.92 0.00 44.86 4.69
3493 4582 8.690840 GTCAAACTATTTCAAAATTTGACCGAG 58.309 33.333 18.57 7.92 37.52 4.63
3494 4583 8.410141 TCAAACTATTTCAAAATTTGACCGAGT 58.590 29.630 8.06 8.51 39.87 4.18
3495 4584 9.030301 CAAACTATTTCAAAATTTGACCGAGTT 57.970 29.630 8.06 13.38 39.87 3.01
3496 4585 9.594478 AAACTATTTCAAAATTTGACCGAGTTT 57.406 25.926 22.23 22.23 39.87 2.66
3497 4586 8.574196 ACTATTTCAAAATTTGACCGAGTTTG 57.426 30.769 8.06 0.00 39.87 2.93
3498 4587 8.194769 ACTATTTCAAAATTTGACCGAGTTTGT 58.805 29.630 8.06 0.00 39.87 2.83
3499 4588 6.639671 TTTCAAAATTTGACCGAGTTTGTG 57.360 33.333 8.06 0.00 39.87 3.33
3500 4589 5.317733 TCAAAATTTGACCGAGTTTGTGT 57.682 34.783 4.03 0.00 34.08 3.72
3501 4590 6.438259 TCAAAATTTGACCGAGTTTGTGTA 57.562 33.333 4.03 0.00 34.08 2.90
3502 4591 6.853720 TCAAAATTTGACCGAGTTTGTGTAA 58.146 32.000 4.03 0.00 34.08 2.41
3503 4592 7.313646 TCAAAATTTGACCGAGTTTGTGTAAA 58.686 30.769 4.03 0.00 34.08 2.01
3504 4593 7.813148 TCAAAATTTGACCGAGTTTGTGTAAAA 59.187 29.630 4.03 0.00 34.08 1.52
3505 4594 8.436200 CAAAATTTGACCGAGTTTGTGTAAAAA 58.564 29.630 0.00 0.00 0.00 1.94
3506 4595 8.710835 AAATTTGACCGAGTTTGTGTAAAAAT 57.289 26.923 0.00 0.00 0.00 1.82
3507 4596 9.804758 AAATTTGACCGAGTTTGTGTAAAAATA 57.195 25.926 0.00 0.00 0.00 1.40
3508 4597 9.974980 AATTTGACCGAGTTTGTGTAAAAATAT 57.025 25.926 0.00 0.00 0.00 1.28
3512 4601 9.438228 TGACCGAGTTTGTGTAAAAATATATCA 57.562 29.630 0.00 0.00 0.00 2.15
3581 4670 9.764363 ATCACGAATCTAATGCTACTAATTTGA 57.236 29.630 0.00 0.00 0.00 2.69
3582 4671 9.764363 TCACGAATCTAATGCTACTAATTTGAT 57.236 29.630 0.00 0.00 33.00 2.57
3583 4672 9.803130 CACGAATCTAATGCTACTAATTTGATG 57.197 33.333 0.00 0.00 32.33 3.07
3584 4673 8.993121 ACGAATCTAATGCTACTAATTTGATGG 58.007 33.333 0.00 0.00 32.33 3.51
3585 4674 7.959651 CGAATCTAATGCTACTAATTTGATGGC 59.040 37.037 0.00 0.00 32.33 4.40
3586 4675 8.696043 AATCTAATGCTACTAATTTGATGGCA 57.304 30.769 0.00 0.00 32.33 4.92
3587 4676 8.874744 ATCTAATGCTACTAATTTGATGGCAT 57.125 30.769 0.00 0.00 40.04 4.40
3588 4677 9.964354 ATCTAATGCTACTAATTTGATGGCATA 57.036 29.630 0.00 0.00 37.85 3.14
3589 4678 9.791801 TCTAATGCTACTAATTTGATGGCATAA 57.208 29.630 0.00 0.00 37.85 1.90
3592 4681 9.701098 AATGCTACTAATTTGATGGCATAATTG 57.299 29.630 15.30 9.52 37.85 2.32
3593 4682 8.236585 TGCTACTAATTTGATGGCATAATTGT 57.763 30.769 15.30 13.25 0.00 2.71
3594 4683 8.694540 TGCTACTAATTTGATGGCATAATTGTT 58.305 29.630 15.30 7.09 0.00 2.83
3595 4684 8.971321 GCTACTAATTTGATGGCATAATTGTTG 58.029 33.333 15.30 12.74 0.00 3.33
3598 4687 9.537192 ACTAATTTGATGGCATAATTGTTGATG 57.463 29.630 15.30 4.82 0.00 3.07
3599 4688 9.537192 CTAATTTGATGGCATAATTGTTGATGT 57.463 29.630 15.30 0.00 0.00 3.06
3671 4760 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
3672 4761 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
3673 4762 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
3674 4763 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
3675 4764 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
3676 4765 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
3677 4766 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
3678 4767 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
3679 4768 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
3680 4769 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
3681 4770 2.832733 ACTCTTTAAAGGACGGAGGGAG 59.167 50.000 15.13 4.81 0.00 4.30
3682 4771 2.832733 CTCTTTAAAGGACGGAGGGAGT 59.167 50.000 15.13 0.00 0.00 3.85
3683 4772 4.021916 CTCTTTAAAGGACGGAGGGAGTA 58.978 47.826 15.13 0.00 0.00 2.59
3684 4773 3.766051 TCTTTAAAGGACGGAGGGAGTAC 59.234 47.826 15.13 0.00 0.00 2.73
3685 4774 2.905415 TAAAGGACGGAGGGAGTACA 57.095 50.000 0.00 0.00 0.00 2.90
3686 4775 2.249309 AAAGGACGGAGGGAGTACAT 57.751 50.000 0.00 0.00 0.00 2.29
3687 4776 1.777941 AAGGACGGAGGGAGTACATC 58.222 55.000 0.00 0.00 0.00 3.06
3688 4777 0.927767 AGGACGGAGGGAGTACATCT 59.072 55.000 0.00 0.00 0.00 2.90
3689 4778 1.288335 AGGACGGAGGGAGTACATCTT 59.712 52.381 0.00 0.00 0.00 2.40
3690 4779 2.108970 GGACGGAGGGAGTACATCTTT 58.891 52.381 0.00 0.00 0.00 2.52
3691 4780 3.053095 AGGACGGAGGGAGTACATCTTTA 60.053 47.826 0.00 0.00 0.00 1.85
3692 4781 3.067883 GGACGGAGGGAGTACATCTTTAC 59.932 52.174 0.00 0.00 0.00 2.01
3693 4782 3.029570 ACGGAGGGAGTACATCTTTACC 58.970 50.000 0.00 0.00 0.00 2.85
3694 4783 3.297736 CGGAGGGAGTACATCTTTACCT 58.702 50.000 0.00 0.00 0.00 3.08
3695 4784 4.079558 ACGGAGGGAGTACATCTTTACCTA 60.080 45.833 0.00 0.00 0.00 3.08
3696 4785 4.891756 CGGAGGGAGTACATCTTTACCTAA 59.108 45.833 0.00 0.00 0.00 2.69
3697 4786 5.539193 CGGAGGGAGTACATCTTTACCTAAT 59.461 44.000 0.00 0.00 0.00 1.73
3698 4787 6.718454 CGGAGGGAGTACATCTTTACCTAATA 59.282 42.308 0.00 0.00 0.00 0.98
3699 4788 7.232127 CGGAGGGAGTACATCTTTACCTAATAA 59.768 40.741 0.00 0.00 0.00 1.40
3700 4789 9.102453 GGAGGGAGTACATCTTTACCTAATAAT 57.898 37.037 0.00 0.00 0.00 1.28
3717 4806 9.355916 ACCTAATAATAAAGGATGAAGGCTTTC 57.644 33.333 0.00 0.77 36.66 2.62
3718 4807 9.354673 CCTAATAATAAAGGATGAAGGCTTTCA 57.645 33.333 14.17 14.17 46.67 2.69
3728 4817 4.908601 TGAAGGCTTTCATAGTTCTCCA 57.091 40.909 7.24 0.00 38.37 3.86
3729 4818 5.441718 TGAAGGCTTTCATAGTTCTCCAT 57.558 39.130 7.24 0.00 38.37 3.41
3730 4819 5.431765 TGAAGGCTTTCATAGTTCTCCATC 58.568 41.667 7.24 0.00 38.37 3.51
3731 4820 5.190528 TGAAGGCTTTCATAGTTCTCCATCT 59.809 40.000 7.24 0.00 38.37 2.90
3732 4821 5.033589 AGGCTTTCATAGTTCTCCATCTG 57.966 43.478 0.00 0.00 0.00 2.90
3733 4822 4.472833 AGGCTTTCATAGTTCTCCATCTGT 59.527 41.667 0.00 0.00 0.00 3.41
3734 4823 4.813697 GGCTTTCATAGTTCTCCATCTGTC 59.186 45.833 0.00 0.00 0.00 3.51
3735 4824 5.423015 GCTTTCATAGTTCTCCATCTGTCA 58.577 41.667 0.00 0.00 0.00 3.58
3736 4825 5.293079 GCTTTCATAGTTCTCCATCTGTCAC 59.707 44.000 0.00 0.00 0.00 3.67
3737 4826 6.358974 TTTCATAGTTCTCCATCTGTCACA 57.641 37.500 0.00 0.00 0.00 3.58
3738 4827 6.550938 TTCATAGTTCTCCATCTGTCACAT 57.449 37.500 0.00 0.00 0.00 3.21
3739 4828 7.660030 TTCATAGTTCTCCATCTGTCACATA 57.340 36.000 0.00 0.00 0.00 2.29
3740 4829 7.846101 TCATAGTTCTCCATCTGTCACATAT 57.154 36.000 0.00 0.00 0.00 1.78
3741 4830 8.255111 TCATAGTTCTCCATCTGTCACATATT 57.745 34.615 0.00 0.00 0.00 1.28
3742 4831 8.708378 TCATAGTTCTCCATCTGTCACATATTT 58.292 33.333 0.00 0.00 0.00 1.40
3743 4832 9.987272 CATAGTTCTCCATCTGTCACATATTTA 57.013 33.333 0.00 0.00 0.00 1.40
3749 4838 9.860898 TCTCCATCTGTCACATATTTATATTCG 57.139 33.333 0.00 0.00 0.00 3.34
3750 4839 9.645059 CTCCATCTGTCACATATTTATATTCGT 57.355 33.333 0.00 0.00 0.00 3.85
3751 4840 9.996554 TCCATCTGTCACATATTTATATTCGTT 57.003 29.630 0.00 0.00 0.00 3.85
3771 4860 7.845617 TCGTTAGATTTTGTGTTAATGCAAC 57.154 32.000 0.00 0.00 37.67 4.17
3772 4861 6.858993 TCGTTAGATTTTGTGTTAATGCAACC 59.141 34.615 0.00 0.00 36.20 3.77
3773 4862 6.638873 CGTTAGATTTTGTGTTAATGCAACCA 59.361 34.615 0.00 0.00 36.20 3.67
3774 4863 7.148983 CGTTAGATTTTGTGTTAATGCAACCAG 60.149 37.037 0.00 0.00 36.20 4.00
3775 4864 6.403866 AGATTTTGTGTTAATGCAACCAGA 57.596 33.333 0.00 0.00 36.20 3.86
3776 4865 6.815089 AGATTTTGTGTTAATGCAACCAGAA 58.185 32.000 0.00 0.00 36.20 3.02
3777 4866 6.925165 AGATTTTGTGTTAATGCAACCAGAAG 59.075 34.615 0.00 0.00 36.20 2.85
3778 4867 5.843673 TTTGTGTTAATGCAACCAGAAGA 57.156 34.783 0.00 0.00 36.20 2.87
3779 4868 5.437289 TTGTGTTAATGCAACCAGAAGAG 57.563 39.130 0.00 0.00 36.20 2.85
3780 4869 3.253188 TGTGTTAATGCAACCAGAAGAGC 59.747 43.478 0.00 0.00 36.20 4.09
3781 4870 3.503748 GTGTTAATGCAACCAGAAGAGCT 59.496 43.478 0.00 0.00 36.20 4.09
3782 4871 4.695455 GTGTTAATGCAACCAGAAGAGCTA 59.305 41.667 0.00 0.00 36.20 3.32
3783 4872 4.937620 TGTTAATGCAACCAGAAGAGCTAG 59.062 41.667 0.00 0.00 36.20 3.42
3784 4873 2.035530 ATGCAACCAGAAGAGCTAGC 57.964 50.000 6.62 6.62 0.00 3.42
3785 4874 0.686789 TGCAACCAGAAGAGCTAGCA 59.313 50.000 18.83 0.00 0.00 3.49
3786 4875 1.280133 TGCAACCAGAAGAGCTAGCAT 59.720 47.619 18.83 1.39 0.00 3.79
3787 4876 2.290514 TGCAACCAGAAGAGCTAGCATT 60.291 45.455 18.83 11.32 0.00 3.56
3788 4877 2.097142 GCAACCAGAAGAGCTAGCATTG 59.903 50.000 18.83 7.18 0.00 2.82
3789 4878 2.681848 CAACCAGAAGAGCTAGCATTGG 59.318 50.000 18.83 17.35 0.00 3.16
3790 4879 1.912043 ACCAGAAGAGCTAGCATTGGT 59.088 47.619 18.83 17.96 32.88 3.67
3791 4880 2.286872 CCAGAAGAGCTAGCATTGGTG 58.713 52.381 18.83 8.36 0.00 4.17
3792 4881 2.355513 CCAGAAGAGCTAGCATTGGTGT 60.356 50.000 18.83 0.00 0.00 4.16
3793 4882 3.341823 CAGAAGAGCTAGCATTGGTGTT 58.658 45.455 18.83 0.00 0.00 3.32
3794 4883 3.126514 CAGAAGAGCTAGCATTGGTGTTG 59.873 47.826 18.83 1.04 0.00 3.33
3795 4884 2.119801 AGAGCTAGCATTGGTGTTGG 57.880 50.000 18.83 0.00 0.00 3.77
3796 4885 1.352352 AGAGCTAGCATTGGTGTTGGT 59.648 47.619 18.83 0.00 0.00 3.67
3797 4886 1.740025 GAGCTAGCATTGGTGTTGGTC 59.260 52.381 18.83 0.00 0.00 4.02
3798 4887 1.073763 AGCTAGCATTGGTGTTGGTCA 59.926 47.619 18.83 0.00 0.00 4.02
3799 4888 2.094675 GCTAGCATTGGTGTTGGTCAT 58.905 47.619 10.63 0.00 0.00 3.06
3800 4889 3.054434 AGCTAGCATTGGTGTTGGTCATA 60.054 43.478 18.83 0.00 0.00 2.15
3801 4890 3.694072 GCTAGCATTGGTGTTGGTCATAA 59.306 43.478 10.63 0.00 0.00 1.90
3802 4891 4.339247 GCTAGCATTGGTGTTGGTCATAAT 59.661 41.667 10.63 0.00 0.00 1.28
3803 4892 5.163519 GCTAGCATTGGTGTTGGTCATAATT 60.164 40.000 10.63 0.00 0.00 1.40
3804 4893 5.743636 AGCATTGGTGTTGGTCATAATTT 57.256 34.783 0.00 0.00 0.00 1.82
3805 4894 6.849085 AGCATTGGTGTTGGTCATAATTTA 57.151 33.333 0.00 0.00 0.00 1.40
3806 4895 6.866480 AGCATTGGTGTTGGTCATAATTTAG 58.134 36.000 0.00 0.00 0.00 1.85
3807 4896 6.042143 GCATTGGTGTTGGTCATAATTTAGG 58.958 40.000 0.00 0.00 0.00 2.69
3808 4897 6.572519 CATTGGTGTTGGTCATAATTTAGGG 58.427 40.000 0.00 0.00 0.00 3.53
3809 4898 5.263872 TGGTGTTGGTCATAATTTAGGGT 57.736 39.130 0.00 0.00 0.00 4.34
3810 4899 5.646215 TGGTGTTGGTCATAATTTAGGGTT 58.354 37.500 0.00 0.00 0.00 4.11
3811 4900 5.712917 TGGTGTTGGTCATAATTTAGGGTTC 59.287 40.000 0.00 0.00 0.00 3.62
3812 4901 5.949952 GGTGTTGGTCATAATTTAGGGTTCT 59.050 40.000 0.00 0.00 0.00 3.01
3813 4902 6.095021 GGTGTTGGTCATAATTTAGGGTTCTC 59.905 42.308 0.00 0.00 0.00 2.87
3814 4903 6.657541 GTGTTGGTCATAATTTAGGGTTCTCA 59.342 38.462 0.00 0.00 0.00 3.27
3815 4904 7.339466 GTGTTGGTCATAATTTAGGGTTCTCAT 59.661 37.037 0.00 0.00 0.00 2.90
3816 4905 8.553153 TGTTGGTCATAATTTAGGGTTCTCATA 58.447 33.333 0.00 0.00 0.00 2.15
3817 4906 9.574516 GTTGGTCATAATTTAGGGTTCTCATAT 57.425 33.333 0.00 0.00 0.00 1.78
3828 4917 8.548880 TTAGGGTTCTCATATTAGTAAGCAGT 57.451 34.615 0.00 0.00 0.00 4.40
3829 4918 7.056844 AGGGTTCTCATATTAGTAAGCAGTC 57.943 40.000 0.00 0.00 0.00 3.51
3830 4919 6.042208 AGGGTTCTCATATTAGTAAGCAGTCC 59.958 42.308 0.00 0.00 0.00 3.85
3831 4920 6.224584 GGTTCTCATATTAGTAAGCAGTCCC 58.775 44.000 0.00 0.00 0.00 4.46
3832 4921 6.183360 GGTTCTCATATTAGTAAGCAGTCCCA 60.183 42.308 0.00 0.00 0.00 4.37
3833 4922 6.406692 TCTCATATTAGTAAGCAGTCCCAC 57.593 41.667 0.00 0.00 0.00 4.61
3834 4923 5.304614 TCTCATATTAGTAAGCAGTCCCACC 59.695 44.000 0.00 0.00 0.00 4.61
3835 4924 5.216622 TCATATTAGTAAGCAGTCCCACCT 58.783 41.667 0.00 0.00 0.00 4.00
3836 4925 5.304614 TCATATTAGTAAGCAGTCCCACCTC 59.695 44.000 0.00 0.00 0.00 3.85
3837 4926 2.615986 TAGTAAGCAGTCCCACCTCA 57.384 50.000 0.00 0.00 0.00 3.86
3838 4927 1.958288 AGTAAGCAGTCCCACCTCAT 58.042 50.000 0.00 0.00 0.00 2.90
3839 4928 1.834263 AGTAAGCAGTCCCACCTCATC 59.166 52.381 0.00 0.00 0.00 2.92
3840 4929 1.555075 GTAAGCAGTCCCACCTCATCA 59.445 52.381 0.00 0.00 0.00 3.07
3841 4930 0.326264 AAGCAGTCCCACCTCATCAC 59.674 55.000 0.00 0.00 0.00 3.06
3842 4931 1.448540 GCAGTCCCACCTCATCACG 60.449 63.158 0.00 0.00 0.00 4.35
3843 4932 1.975327 CAGTCCCACCTCATCACGT 59.025 57.895 0.00 0.00 0.00 4.49
3844 4933 0.108615 CAGTCCCACCTCATCACGTC 60.109 60.000 0.00 0.00 0.00 4.34
3845 4934 0.541998 AGTCCCACCTCATCACGTCA 60.542 55.000 0.00 0.00 0.00 4.35
3846 4935 0.537188 GTCCCACCTCATCACGTCAT 59.463 55.000 0.00 0.00 0.00 3.06
3847 4936 0.536724 TCCCACCTCATCACGTCATG 59.463 55.000 0.00 0.00 0.00 3.07
3848 4937 0.462581 CCCACCTCATCACGTCATGG 60.463 60.000 0.00 0.00 0.00 3.66
3849 4938 0.250234 CCACCTCATCACGTCATGGT 59.750 55.000 0.00 0.00 0.00 3.55
3850 4939 1.480545 CCACCTCATCACGTCATGGTA 59.519 52.381 0.00 0.00 0.00 3.25
3851 4940 2.540515 CACCTCATCACGTCATGGTAC 58.459 52.381 0.00 0.00 0.00 3.34
3871 4960 3.324207 AAAAAGAGGTCCAGTCGCC 57.676 52.632 0.00 0.00 0.00 5.54
3872 4961 0.602905 AAAAAGAGGTCCAGTCGCCG 60.603 55.000 0.00 0.00 0.00 6.46
3873 4962 1.755393 AAAAGAGGTCCAGTCGCCGT 61.755 55.000 0.00 0.00 0.00 5.68
3874 4963 0.896940 AAAGAGGTCCAGTCGCCGTA 60.897 55.000 0.00 0.00 0.00 4.02
3875 4964 1.593296 AAGAGGTCCAGTCGCCGTAC 61.593 60.000 0.00 0.00 0.00 3.67
3876 4965 3.392595 GAGGTCCAGTCGCCGTACG 62.393 68.421 8.69 8.69 45.62 3.67
3877 4966 3.741476 GGTCCAGTCGCCGTACGT 61.741 66.667 15.21 0.00 44.19 3.57
3878 4967 2.202401 GTCCAGTCGCCGTACGTC 60.202 66.667 15.21 0.00 44.19 4.34
3879 4968 2.359107 TCCAGTCGCCGTACGTCT 60.359 61.111 15.21 4.26 44.19 4.18
3880 4969 1.079197 TCCAGTCGCCGTACGTCTA 60.079 57.895 15.21 0.00 44.19 2.59
3881 4970 0.673333 TCCAGTCGCCGTACGTCTAA 60.673 55.000 15.21 0.00 44.19 2.10
3882 4971 0.379669 CCAGTCGCCGTACGTCTAAT 59.620 55.000 15.21 0.00 44.19 1.73
3883 4972 1.596464 CCAGTCGCCGTACGTCTAATC 60.596 57.143 15.21 0.00 44.19 1.75
3884 4973 1.329906 CAGTCGCCGTACGTCTAATCT 59.670 52.381 15.21 2.14 44.19 2.40
3885 4974 2.012673 AGTCGCCGTACGTCTAATCTT 58.987 47.619 15.21 0.00 44.19 2.40
3886 4975 2.421424 AGTCGCCGTACGTCTAATCTTT 59.579 45.455 15.21 0.00 44.19 2.52
3887 4976 2.780557 GTCGCCGTACGTCTAATCTTTC 59.219 50.000 15.21 0.00 44.19 2.62
3888 4977 2.114825 CGCCGTACGTCTAATCTTTCC 58.885 52.381 15.21 0.00 36.87 3.13
3889 4978 2.478370 CGCCGTACGTCTAATCTTTCCA 60.478 50.000 15.21 0.00 36.87 3.53
3890 4979 2.856557 GCCGTACGTCTAATCTTTCCAC 59.143 50.000 15.21 0.00 0.00 4.02
3891 4980 3.103738 CCGTACGTCTAATCTTTCCACG 58.896 50.000 15.21 0.00 36.54 4.94
3892 4981 3.181507 CCGTACGTCTAATCTTTCCACGA 60.182 47.826 15.21 0.00 34.55 4.35
3893 4982 4.027065 CGTACGTCTAATCTTTCCACGAG 58.973 47.826 7.22 0.00 34.55 4.18
3894 4983 4.436584 CGTACGTCTAATCTTTCCACGAGT 60.437 45.833 7.22 0.00 34.55 4.18
3895 4984 4.516365 ACGTCTAATCTTTCCACGAGTT 57.484 40.909 0.00 0.00 34.55 3.01
3896 4985 4.879598 ACGTCTAATCTTTCCACGAGTTT 58.120 39.130 0.00 0.00 34.55 2.66
3897 4986 5.295152 ACGTCTAATCTTTCCACGAGTTTT 58.705 37.500 0.00 0.00 34.55 2.43
3898 4987 5.404667 ACGTCTAATCTTTCCACGAGTTTTC 59.595 40.000 0.00 0.00 34.55 2.29
3899 4988 5.163982 CGTCTAATCTTTCCACGAGTTTTCC 60.164 44.000 0.00 0.00 32.08 3.13
3900 4989 5.121925 GTCTAATCTTTCCACGAGTTTTCCC 59.878 44.000 0.00 0.00 0.00 3.97
3901 4990 2.265589 TCTTTCCACGAGTTTTCCCC 57.734 50.000 0.00 0.00 0.00 4.81
3902 4991 0.872388 CTTTCCACGAGTTTTCCCCG 59.128 55.000 0.00 0.00 0.00 5.73
3903 4992 0.469070 TTTCCACGAGTTTTCCCCGA 59.531 50.000 0.00 0.00 0.00 5.14
3904 4993 0.688487 TTCCACGAGTTTTCCCCGAT 59.312 50.000 0.00 0.00 0.00 4.18
3905 4994 0.036765 TCCACGAGTTTTCCCCGATG 60.037 55.000 0.00 0.00 0.00 3.84
3906 4995 0.321298 CCACGAGTTTTCCCCGATGT 60.321 55.000 0.00 0.00 0.00 3.06
3907 4996 1.076332 CACGAGTTTTCCCCGATGTC 58.924 55.000 0.00 0.00 0.00 3.06
3908 4997 0.974383 ACGAGTTTTCCCCGATGTCT 59.026 50.000 0.00 0.00 0.00 3.41
3909 4998 1.067071 ACGAGTTTTCCCCGATGTCTC 60.067 52.381 0.00 0.00 0.00 3.36
3910 4999 1.739371 CGAGTTTTCCCCGATGTCTCC 60.739 57.143 0.00 0.00 0.00 3.71
3911 5000 1.278127 GAGTTTTCCCCGATGTCTCCA 59.722 52.381 0.00 0.00 0.00 3.86
3912 5001 1.916181 AGTTTTCCCCGATGTCTCCAT 59.084 47.619 0.00 0.00 0.00 3.41
3913 5002 2.092914 AGTTTTCCCCGATGTCTCCATC 60.093 50.000 0.00 0.00 43.41 3.51
3919 5008 4.643733 GATGTCTCCATCGCTCGG 57.356 61.111 0.00 0.00 38.28 4.63
3920 5009 1.663074 GATGTCTCCATCGCTCGGC 60.663 63.158 0.00 0.00 38.28 5.54
3921 5010 2.081425 GATGTCTCCATCGCTCGGCT 62.081 60.000 0.00 0.00 38.28 5.52
3922 5011 2.279120 GTCTCCATCGCTCGGCTG 60.279 66.667 0.00 0.00 0.00 4.85
3923 5012 3.531207 TCTCCATCGCTCGGCTGG 61.531 66.667 0.00 5.75 0.00 4.85
3924 5013 4.598894 CTCCATCGCTCGGCTGGG 62.599 72.222 10.35 0.00 0.00 4.45
3940 5029 2.120496 GGCCTTTCCCTGGGCTTT 59.880 61.111 8.22 0.00 46.80 3.51
3941 5030 2.285773 GGCCTTTCCCTGGGCTTTG 61.286 63.158 8.22 0.00 46.80 2.77
3942 5031 2.947532 GCCTTTCCCTGGGCTTTGC 61.948 63.158 8.22 4.59 44.48 3.68
3943 5032 1.533753 CCTTTCCCTGGGCTTTGCA 60.534 57.895 8.22 0.00 0.00 4.08
3944 5033 1.667722 CTTTCCCTGGGCTTTGCAC 59.332 57.895 8.22 0.00 0.00 4.57
3945 5034 1.820010 CTTTCCCTGGGCTTTGCACC 61.820 60.000 8.22 0.00 0.00 5.01
3946 5035 2.310930 TTTCCCTGGGCTTTGCACCT 62.311 55.000 8.22 0.00 0.00 4.00
3947 5036 2.993264 CCCTGGGCTTTGCACCTG 60.993 66.667 0.00 0.00 0.00 4.00
3948 5037 3.688159 CCTGGGCTTTGCACCTGC 61.688 66.667 0.00 0.00 42.50 4.85
3958 5047 3.978272 GCACCTGCACTCCAGAAG 58.022 61.111 0.00 0.00 44.64 2.85
3959 5048 1.673665 GCACCTGCACTCCAGAAGG 60.674 63.158 0.00 0.00 44.64 3.46
3960 5049 1.673665 CACCTGCACTCCAGAAGGC 60.674 63.158 0.00 0.00 44.64 4.35
3961 5050 2.045536 CCTGCACTCCAGAAGGCC 60.046 66.667 0.00 0.00 44.64 5.19
3962 5051 2.752358 CTGCACTCCAGAAGGCCA 59.248 61.111 5.01 0.00 44.64 5.36
3963 5052 1.073722 CTGCACTCCAGAAGGCCAA 59.926 57.895 5.01 0.00 44.64 4.52
3964 5053 1.228245 TGCACTCCAGAAGGCCAAC 60.228 57.895 5.01 0.00 33.74 3.77
3965 5054 1.228245 GCACTCCAGAAGGCCAACA 60.228 57.895 5.01 0.00 33.74 3.33
3966 5055 0.823356 GCACTCCAGAAGGCCAACAA 60.823 55.000 5.01 0.00 33.74 2.83
3967 5056 1.691196 CACTCCAGAAGGCCAACAAA 58.309 50.000 5.01 0.00 33.74 2.83
3968 5057 1.610522 CACTCCAGAAGGCCAACAAAG 59.389 52.381 5.01 0.00 33.74 2.77
3969 5058 1.494721 ACTCCAGAAGGCCAACAAAGA 59.505 47.619 5.01 0.00 33.74 2.52
3970 5059 1.882623 CTCCAGAAGGCCAACAAAGAC 59.117 52.381 5.01 0.00 33.74 3.01
3971 5060 0.961753 CCAGAAGGCCAACAAAGACC 59.038 55.000 5.01 0.00 0.00 3.85
3972 5061 1.479389 CCAGAAGGCCAACAAAGACCT 60.479 52.381 5.01 0.00 0.00 3.85
3973 5062 1.882623 CAGAAGGCCAACAAAGACCTC 59.117 52.381 5.01 0.00 0.00 3.85
3974 5063 1.494721 AGAAGGCCAACAAAGACCTCA 59.505 47.619 5.01 0.00 0.00 3.86
3975 5064 2.091885 AGAAGGCCAACAAAGACCTCAA 60.092 45.455 5.01 0.00 0.00 3.02
3976 5065 2.452600 AGGCCAACAAAGACCTCAAA 57.547 45.000 5.01 0.00 0.00 2.69
3977 5066 2.031870 AGGCCAACAAAGACCTCAAAC 58.968 47.619 5.01 0.00 0.00 2.93
3978 5067 1.068588 GGCCAACAAAGACCTCAAACC 59.931 52.381 0.00 0.00 0.00 3.27
3979 5068 2.031870 GCCAACAAAGACCTCAAACCT 58.968 47.619 0.00 0.00 0.00 3.50
3980 5069 3.219281 GCCAACAAAGACCTCAAACCTA 58.781 45.455 0.00 0.00 0.00 3.08
3981 5070 3.634910 GCCAACAAAGACCTCAAACCTAA 59.365 43.478 0.00 0.00 0.00 2.69
3982 5071 4.098807 GCCAACAAAGACCTCAAACCTAAA 59.901 41.667 0.00 0.00 0.00 1.85
3983 5072 5.588240 CCAACAAAGACCTCAAACCTAAAC 58.412 41.667 0.00 0.00 0.00 2.01
3984 5073 5.451381 CCAACAAAGACCTCAAACCTAAACC 60.451 44.000 0.00 0.00 0.00 3.27
3985 5074 3.881089 ACAAAGACCTCAAACCTAAACCG 59.119 43.478 0.00 0.00 0.00 4.44
3986 5075 3.851458 AAGACCTCAAACCTAAACCGT 57.149 42.857 0.00 0.00 0.00 4.83
3987 5076 3.121738 AGACCTCAAACCTAAACCGTG 57.878 47.619 0.00 0.00 0.00 4.94
3988 5077 2.436911 AGACCTCAAACCTAAACCGTGT 59.563 45.455 0.00 0.00 0.00 4.49
3989 5078 2.804527 GACCTCAAACCTAAACCGTGTC 59.195 50.000 0.00 0.00 0.00 3.67
3990 5079 2.148768 CCTCAAACCTAAACCGTGTCC 58.851 52.381 0.00 0.00 0.00 4.02
3991 5080 1.796459 CTCAAACCTAAACCGTGTCCG 59.204 52.381 0.00 0.00 0.00 4.79
3992 5081 0.236449 CAAACCTAAACCGTGTCCGC 59.764 55.000 0.00 0.00 0.00 5.54
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.857157 TGGACTTGGCTAGTTTTCACT 57.143 42.857 2.51 0.00 37.17 3.41
2 3 3.219281 GGTTGGACTTGGCTAGTTTTCA 58.781 45.455 2.51 0.43 37.17 2.69
3 4 3.219281 TGGTTGGACTTGGCTAGTTTTC 58.781 45.455 2.51 0.00 37.17 2.29
4 5 3.306472 TGGTTGGACTTGGCTAGTTTT 57.694 42.857 2.51 0.00 37.17 2.43
5 6 3.306472 TTGGTTGGACTTGGCTAGTTT 57.694 42.857 2.51 0.00 37.17 2.66
6 7 3.525800 ATTGGTTGGACTTGGCTAGTT 57.474 42.857 2.51 0.00 37.17 2.24
7 8 4.589908 CTTATTGGTTGGACTTGGCTAGT 58.410 43.478 0.00 0.00 40.71 2.57
8 9 3.378427 GCTTATTGGTTGGACTTGGCTAG 59.622 47.826 0.00 0.00 0.00 3.42
9 10 3.245087 TGCTTATTGGTTGGACTTGGCTA 60.245 43.478 0.00 0.00 0.00 3.93
10 11 2.171003 GCTTATTGGTTGGACTTGGCT 58.829 47.619 0.00 0.00 0.00 4.75
17 18 3.495331 TCTTTGCTGCTTATTGGTTGGA 58.505 40.909 0.00 0.00 0.00 3.53
45 46 4.336993 TCGCTCATTGTAGTTTTGTTGGTT 59.663 37.500 0.00 0.00 0.00 3.67
47 48 4.466828 CTCGCTCATTGTAGTTTTGTTGG 58.533 43.478 0.00 0.00 0.00 3.77
52 53 2.683968 TCGCTCGCTCATTGTAGTTTT 58.316 42.857 0.00 0.00 0.00 2.43
55 56 1.469940 CCTTCGCTCGCTCATTGTAGT 60.470 52.381 0.00 0.00 0.00 2.73
74 75 4.280929 ACTGGCTAGTTTCCATGTTTTTCC 59.719 41.667 0.00 0.00 31.66 3.13
80 81 3.412386 GTTCACTGGCTAGTTTCCATGT 58.588 45.455 0.00 0.00 34.07 3.21
130 132 1.481871 TCTCCCCCATCGTAACAGAC 58.518 55.000 0.00 0.00 0.00 3.51
132 134 3.343941 TTTTCTCCCCCATCGTAACAG 57.656 47.619 0.00 0.00 0.00 3.16
138 140 2.789409 AGAGTTTTTCTCCCCCATCG 57.211 50.000 0.00 0.00 43.71 3.84
141 143 4.041691 CACTAGAAGAGTTTTTCTCCCCCA 59.958 45.833 0.00 0.00 43.71 4.96
142 144 4.286291 TCACTAGAAGAGTTTTTCTCCCCC 59.714 45.833 0.00 0.00 43.71 5.40
160 162 3.521560 CAAATGTTAGCTCGGCTCACTA 58.478 45.455 1.46 0.00 40.44 2.74
161 163 2.350522 CAAATGTTAGCTCGGCTCACT 58.649 47.619 1.46 0.00 40.44 3.41
167 169 6.537301 TCACTTAATACCAAATGTTAGCTCGG 59.463 38.462 0.00 0.00 0.00 4.63
212 214 0.101759 GAGCAATCGCGTACCACCTA 59.898 55.000 5.77 0.00 45.49 3.08
267 269 3.067883 GGAAGTACAAGACCGTATCCCTC 59.932 52.174 0.00 0.00 0.00 4.30
288 290 5.068460 TGTGTTTTGGAAATAAGGACACTGG 59.932 40.000 0.00 0.00 37.42 4.00
307 309 6.523840 AGCCAAAATATGTGTCATTTGTGTT 58.476 32.000 0.00 0.00 32.29 3.32
394 399 9.936759 GGGGTATTCTTTTTAAATTGTGAATCA 57.063 29.630 0.00 0.00 0.00 2.57
440 445 6.934083 ACTTGACTCAAAACAAACCAAAATGT 59.066 30.769 0.00 0.00 0.00 2.71
522 720 8.004344 GTGAAAAGATATTCGTTGATACATCCG 58.996 37.037 0.00 0.00 31.80 4.18
541 739 8.789881 TCAACAAATAAATACGGTGTGAAAAG 57.210 30.769 0.00 0.00 0.00 2.27
651 883 1.032014 GCCGGTGCAATGGTTCATAT 58.968 50.000 1.90 0.00 37.47 1.78
652 884 1.372838 CGCCGGTGCAATGGTTCATA 61.373 55.000 0.00 0.00 37.32 2.15
653 885 2.699768 CGCCGGTGCAATGGTTCAT 61.700 57.895 0.00 0.00 37.32 2.57
654 886 3.361158 CGCCGGTGCAATGGTTCA 61.361 61.111 0.00 0.00 37.32 3.18
655 887 4.114997 CCGCCGGTGCAATGGTTC 62.115 66.667 10.27 0.00 37.32 3.62
659 891 3.803082 CTGTCCGCCGGTGCAATG 61.803 66.667 10.27 0.00 37.32 2.82
660 892 3.842925 AACTGTCCGCCGGTGCAAT 62.843 57.895 10.27 0.00 37.32 3.56
766 1034 6.979414 CATTGTGAGCGTACGGCAATGAAG 62.979 50.000 18.39 0.00 45.22 3.02
827 1099 3.243168 TGTTTGACTGAGCTCAACAATGC 60.243 43.478 25.82 22.08 29.62 3.56
832 1104 3.059884 TCGATGTTTGACTGAGCTCAAC 58.940 45.455 18.85 12.98 29.62 3.18
856 1128 3.570975 GGCATTCCAAGATACATGCATCA 59.429 43.478 8.63 0.00 43.27 3.07
891 1163 1.602377 GCAAAGCTACCACGAAACAGT 59.398 47.619 0.00 0.00 0.00 3.55
893 1165 0.948678 GGCAAAGCTACCACGAAACA 59.051 50.000 0.00 0.00 0.00 2.83
1028 1310 0.736636 TACGATCGCCAGTACCACTG 59.263 55.000 16.60 0.00 45.53 3.66
1527 1815 2.237143 TGCATGAGGTTGTAAGAGAGGG 59.763 50.000 0.00 0.00 0.00 4.30
1533 1821 1.129251 CAGCGTGCATGAGGTTGTAAG 59.871 52.381 10.93 0.00 0.00 2.34
1534 1822 1.155889 CAGCGTGCATGAGGTTGTAA 58.844 50.000 10.93 0.00 0.00 2.41
1541 1829 0.928922 GAGATCACAGCGTGCATGAG 59.071 55.000 10.93 3.52 32.98 2.90
1901 2295 3.165071 CCAACCTGCAGAAATAAACCCT 58.835 45.455 17.39 0.00 0.00 4.34
2220 2981 8.400947 ACAATCGATCAAATTTCTTAGTGATGG 58.599 33.333 0.00 0.00 30.94 3.51
2261 3045 3.051081 ACTGTCTCAATCACAGAAGCC 57.949 47.619 6.83 0.00 43.54 4.35
2318 3119 5.221661 ACCTTAGGATTATTGAAGTAGGCGG 60.222 44.000 4.77 0.00 0.00 6.13
2331 3132 3.115390 AGCCTTCTGCACCTTAGGATTA 58.885 45.455 4.77 0.00 44.83 1.75
2445 3274 0.537371 GACAGAACAAGGTGGGGGTG 60.537 60.000 0.00 0.00 0.00 4.61
2447 3276 1.074951 GGACAGAACAAGGTGGGGG 59.925 63.158 0.00 0.00 0.00 5.40
2603 3539 8.393366 CGATGATTTTATGATATAAGTGGCAGG 58.607 37.037 0.00 0.00 0.00 4.85
2604 3540 7.907045 GCGATGATTTTATGATATAAGTGGCAG 59.093 37.037 0.00 0.00 0.00 4.85
2777 3824 7.121759 CACAATCCAATCACAAGACCTAGATTT 59.878 37.037 0.00 0.00 0.00 2.17
3135 4217 3.073798 TGGACAACATACACAAGGTGGAT 59.926 43.478 1.07 0.00 37.63 3.41
3149 4231 1.600023 CTAACGGCCTTTGGACAACA 58.400 50.000 4.40 0.00 0.00 3.33
3176 4259 7.429340 GCATTACATTATTGAGTTGAAGAACGG 59.571 37.037 0.00 0.00 37.15 4.44
3229 4318 8.789762 ACTTTATTTAACCACGATAAGCAAAGT 58.210 29.630 0.00 0.00 30.94 2.66
3239 4328 8.441312 ACTTCTGAAACTTTATTTAACCACGA 57.559 30.769 0.00 0.00 0.00 4.35
3268 4357 0.622136 ATTGAGCAGACAGATGGGCA 59.378 50.000 0.00 0.00 0.00 5.36
3352 4441 6.471233 TGAAGACAGTCTGGGTATCAATAG 57.529 41.667 3.05 0.00 0.00 1.73
3370 4459 5.957771 ATTGTACCTGCCTCTAATGAAGA 57.042 39.130 0.00 0.00 0.00 2.87
3414 4503 2.178106 AGGACGGAGGGAGTATCTCAAT 59.822 50.000 0.00 0.00 38.91 2.57
3415 4504 1.569548 AGGACGGAGGGAGTATCTCAA 59.430 52.381 0.00 0.00 38.91 3.02
3424 4513 2.565834 CACTCTTTAAAGGACGGAGGGA 59.434 50.000 15.13 0.00 29.82 4.20
3425 4514 2.302157 ACACTCTTTAAAGGACGGAGGG 59.698 50.000 15.13 8.51 34.07 4.30
3426 4515 3.679824 ACACTCTTTAAAGGACGGAGG 57.320 47.619 15.13 2.85 0.00 4.30
3427 4516 5.388408 AGTACACTCTTTAAAGGACGGAG 57.612 43.478 15.13 7.51 0.00 4.63
3428 4517 5.279156 GGAAGTACACTCTTTAAAGGACGGA 60.279 44.000 15.13 0.00 0.00 4.69
3429 4518 4.928020 GGAAGTACACTCTTTAAAGGACGG 59.072 45.833 15.13 5.64 0.00 4.79
3430 4519 5.535333 TGGAAGTACACTCTTTAAAGGACG 58.465 41.667 15.13 6.90 0.00 4.79
3431 4520 6.990939 AGTTGGAAGTACACTCTTTAAAGGAC 59.009 38.462 15.13 6.27 0.00 3.85
3432 4521 7.133133 AGTTGGAAGTACACTCTTTAAAGGA 57.867 36.000 15.13 1.82 0.00 3.36
3433 4522 7.803279 AAGTTGGAAGTACACTCTTTAAAGG 57.197 36.000 15.13 8.48 0.00 3.11
3434 4523 8.674607 ACAAAGTTGGAAGTACACTCTTTAAAG 58.325 33.333 9.04 9.04 0.00 1.85
3435 4524 8.570068 ACAAAGTTGGAAGTACACTCTTTAAA 57.430 30.769 0.00 0.00 0.00 1.52
3436 4525 8.455682 CAACAAAGTTGGAAGTACACTCTTTAA 58.544 33.333 2.05 0.00 0.00 1.52
3437 4526 7.066525 CCAACAAAGTTGGAAGTACACTCTTTA 59.933 37.037 21.24 0.00 42.06 1.85
3438 4527 6.127730 CCAACAAAGTTGGAAGTACACTCTTT 60.128 38.462 21.24 0.00 42.06 2.52
3439 4528 5.357032 CCAACAAAGTTGGAAGTACACTCTT 59.643 40.000 21.24 0.00 42.06 2.85
3440 4529 4.881850 CCAACAAAGTTGGAAGTACACTCT 59.118 41.667 21.24 0.00 42.06 3.24
3441 4530 4.879545 TCCAACAAAGTTGGAAGTACACTC 59.120 41.667 24.83 0.00 44.90 3.51
3442 4531 4.850680 TCCAACAAAGTTGGAAGTACACT 58.149 39.130 24.83 0.00 44.90 3.55
3443 4532 4.036380 CCTCCAACAAAGTTGGAAGTACAC 59.964 45.833 26.25 0.00 46.85 2.90
3444 4533 4.204012 CCTCCAACAAAGTTGGAAGTACA 58.796 43.478 26.25 8.75 46.85 2.90
3445 4534 3.568430 CCCTCCAACAAAGTTGGAAGTAC 59.432 47.826 26.25 0.00 46.85 2.73
3446 4535 3.203487 ACCCTCCAACAAAGTTGGAAGTA 59.797 43.478 26.25 9.67 46.85 2.24
3447 4536 2.024369 ACCCTCCAACAAAGTTGGAAGT 60.024 45.455 26.25 22.95 46.85 3.01
3448 4537 2.623416 GACCCTCCAACAAAGTTGGAAG 59.377 50.000 26.25 21.51 46.85 3.46
3449 4538 2.024846 TGACCCTCCAACAAAGTTGGAA 60.025 45.455 26.25 12.88 46.85 3.53
3450 4539 1.566703 TGACCCTCCAACAAAGTTGGA 59.433 47.619 25.17 25.17 45.61 3.53
3451 4540 2.065899 TGACCCTCCAACAAAGTTGG 57.934 50.000 20.09 20.09 40.87 3.77
3452 4541 3.447229 AGTTTGACCCTCCAACAAAGTTG 59.553 43.478 3.00 3.00 34.79 3.16
3453 4542 3.708451 AGTTTGACCCTCCAACAAAGTT 58.292 40.909 0.00 0.00 34.79 2.66
3454 4543 3.382083 AGTTTGACCCTCCAACAAAGT 57.618 42.857 0.00 0.00 34.86 2.66
3455 4544 6.040391 TGAAATAGTTTGACCCTCCAACAAAG 59.960 38.462 0.00 0.00 34.86 2.77
3456 4545 5.894393 TGAAATAGTTTGACCCTCCAACAAA 59.106 36.000 0.00 0.00 0.00 2.83
3457 4546 5.450453 TGAAATAGTTTGACCCTCCAACAA 58.550 37.500 0.00 0.00 0.00 2.83
3458 4547 5.055265 TGAAATAGTTTGACCCTCCAACA 57.945 39.130 0.00 0.00 0.00 3.33
3459 4548 6.399639 TTTGAAATAGTTTGACCCTCCAAC 57.600 37.500 0.00 0.00 0.00 3.77
3460 4549 7.610580 ATTTTGAAATAGTTTGACCCTCCAA 57.389 32.000 0.00 0.00 0.00 3.53
3461 4550 7.610580 AATTTTGAAATAGTTTGACCCTCCA 57.389 32.000 0.00 0.00 0.00 3.86
3462 4551 8.147704 TCAAATTTTGAAATAGTTTGACCCTCC 58.852 33.333 9.36 0.00 36.59 4.30
3463 4552 8.978539 GTCAAATTTTGAAATAGTTTGACCCTC 58.021 33.333 20.94 7.52 42.15 4.30
3464 4553 7.931407 GGTCAAATTTTGAAATAGTTTGACCCT 59.069 33.333 29.19 0.00 46.19 4.34
3465 4554 8.083462 GGTCAAATTTTGAAATAGTTTGACCC 57.917 34.615 29.19 20.29 46.19 4.46
3467 4556 8.568732 TCGGTCAAATTTTGAAATAGTTTGAC 57.431 30.769 22.17 22.17 42.15 3.18
3468 4557 8.410141 ACTCGGTCAAATTTTGAAATAGTTTGA 58.590 29.630 13.21 8.55 42.15 2.69
3469 4558 8.574196 ACTCGGTCAAATTTTGAAATAGTTTG 57.426 30.769 13.21 5.25 42.15 2.93
3470 4559 9.594478 AAACTCGGTCAAATTTTGAAATAGTTT 57.406 25.926 24.10 24.10 42.15 2.66
3471 4560 9.030301 CAAACTCGGTCAAATTTTGAAATAGTT 57.970 29.630 13.21 16.79 42.15 2.24
3472 4561 8.194769 ACAAACTCGGTCAAATTTTGAAATAGT 58.805 29.630 13.21 12.68 42.15 2.12
3473 4562 8.479280 CACAAACTCGGTCAAATTTTGAAATAG 58.521 33.333 13.21 12.14 42.15 1.73
3474 4563 7.976734 ACACAAACTCGGTCAAATTTTGAAATA 59.023 29.630 13.21 1.74 42.15 1.40
3475 4564 6.816140 ACACAAACTCGGTCAAATTTTGAAAT 59.184 30.769 13.21 0.00 42.15 2.17
3476 4565 6.159988 ACACAAACTCGGTCAAATTTTGAAA 58.840 32.000 13.21 2.41 42.15 2.69
3477 4566 5.715070 ACACAAACTCGGTCAAATTTTGAA 58.285 33.333 13.21 0.00 42.15 2.69
3478 4567 5.317733 ACACAAACTCGGTCAAATTTTGA 57.682 34.783 7.74 7.74 37.33 2.69
3479 4568 7.513190 TTTACACAAACTCGGTCAAATTTTG 57.487 32.000 2.59 2.59 34.10 2.44
3480 4569 8.535690 TTTTTACACAAACTCGGTCAAATTTT 57.464 26.923 0.00 0.00 0.00 1.82
3481 4570 8.710835 ATTTTTACACAAACTCGGTCAAATTT 57.289 26.923 0.00 0.00 0.00 1.82
3482 4571 9.974980 ATATTTTTACACAAACTCGGTCAAATT 57.025 25.926 0.00 0.00 0.00 1.82
3486 4575 9.438228 TGATATATTTTTACACAAACTCGGTCA 57.562 29.630 0.00 0.00 0.00 4.02
3555 4644 9.764363 TCAAATTAGTAGCATTAGATTCGTGAT 57.236 29.630 0.00 0.00 0.00 3.06
3556 4645 9.764363 ATCAAATTAGTAGCATTAGATTCGTGA 57.236 29.630 0.00 0.00 0.00 4.35
3557 4646 9.803130 CATCAAATTAGTAGCATTAGATTCGTG 57.197 33.333 0.00 0.00 0.00 4.35
3558 4647 8.993121 CCATCAAATTAGTAGCATTAGATTCGT 58.007 33.333 0.00 0.00 0.00 3.85
3559 4648 7.959651 GCCATCAAATTAGTAGCATTAGATTCG 59.040 37.037 0.00 0.00 0.00 3.34
3560 4649 8.786898 TGCCATCAAATTAGTAGCATTAGATTC 58.213 33.333 0.00 0.00 0.00 2.52
3561 4650 8.696043 TGCCATCAAATTAGTAGCATTAGATT 57.304 30.769 0.00 0.00 0.00 2.40
3562 4651 8.874744 ATGCCATCAAATTAGTAGCATTAGAT 57.125 30.769 0.00 0.00 36.10 1.98
3563 4652 9.791801 TTATGCCATCAAATTAGTAGCATTAGA 57.208 29.630 0.00 0.00 39.89 2.10
3566 4655 9.701098 CAATTATGCCATCAAATTAGTAGCATT 57.299 29.630 0.00 0.00 39.89 3.56
3567 4656 8.863086 ACAATTATGCCATCAAATTAGTAGCAT 58.137 29.630 0.00 0.00 41.89 3.79
3568 4657 8.236585 ACAATTATGCCATCAAATTAGTAGCA 57.763 30.769 0.00 0.00 0.00 3.49
3569 4658 8.971321 CAACAATTATGCCATCAAATTAGTAGC 58.029 33.333 0.00 0.00 0.00 3.58
3572 4661 9.537192 CATCAACAATTATGCCATCAAATTAGT 57.463 29.630 0.00 0.00 0.00 2.24
3573 4662 9.537192 ACATCAACAATTATGCCATCAAATTAG 57.463 29.630 0.00 0.00 0.00 1.73
3645 4734 8.683615 CCTTTAAAGAGTGTACTTCCAACTTTT 58.316 33.333 16.98 0.00 31.02 2.27
3646 4735 8.050930 TCCTTTAAAGAGTGTACTTCCAACTTT 58.949 33.333 16.98 0.00 32.26 2.66
3647 4736 7.498239 GTCCTTTAAAGAGTGTACTTCCAACTT 59.502 37.037 16.98 0.00 0.00 2.66
3648 4737 6.990939 GTCCTTTAAAGAGTGTACTTCCAACT 59.009 38.462 16.98 0.00 0.00 3.16
3649 4738 6.073927 CGTCCTTTAAAGAGTGTACTTCCAAC 60.074 42.308 16.98 0.00 0.00 3.77
3650 4739 5.987347 CGTCCTTTAAAGAGTGTACTTCCAA 59.013 40.000 16.98 0.00 0.00 3.53
3651 4740 5.510179 CCGTCCTTTAAAGAGTGTACTTCCA 60.510 44.000 16.98 0.00 0.00 3.53
3652 4741 4.928020 CCGTCCTTTAAAGAGTGTACTTCC 59.072 45.833 16.98 0.00 0.00 3.46
3653 4742 5.776744 TCCGTCCTTTAAAGAGTGTACTTC 58.223 41.667 16.98 0.00 0.00 3.01
3654 4743 5.279356 CCTCCGTCCTTTAAAGAGTGTACTT 60.279 44.000 16.98 0.00 0.00 2.24
3655 4744 4.220163 CCTCCGTCCTTTAAAGAGTGTACT 59.780 45.833 16.98 0.00 0.00 2.73
3656 4745 4.492611 CCTCCGTCCTTTAAAGAGTGTAC 58.507 47.826 16.98 5.84 0.00 2.90
3657 4746 3.512724 CCCTCCGTCCTTTAAAGAGTGTA 59.487 47.826 16.98 0.00 0.00 2.90
3658 4747 2.302157 CCCTCCGTCCTTTAAAGAGTGT 59.698 50.000 16.98 0.00 0.00 3.55
3659 4748 2.565834 TCCCTCCGTCCTTTAAAGAGTG 59.434 50.000 16.98 5.33 0.00 3.51
3660 4749 2.832733 CTCCCTCCGTCCTTTAAAGAGT 59.167 50.000 16.98 0.00 0.00 3.24
3661 4750 2.832733 ACTCCCTCCGTCCTTTAAAGAG 59.167 50.000 16.98 7.03 0.00 2.85
3662 4751 2.898662 ACTCCCTCCGTCCTTTAAAGA 58.101 47.619 16.98 0.24 0.00 2.52
3663 4752 3.512724 TGTACTCCCTCCGTCCTTTAAAG 59.487 47.826 8.32 8.32 0.00 1.85
3664 4753 3.509442 TGTACTCCCTCCGTCCTTTAAA 58.491 45.455 0.00 0.00 0.00 1.52
3665 4754 3.173953 TGTACTCCCTCCGTCCTTTAA 57.826 47.619 0.00 0.00 0.00 1.52
3666 4755 2.905415 TGTACTCCCTCCGTCCTTTA 57.095 50.000 0.00 0.00 0.00 1.85
3667 4756 2.108970 GATGTACTCCCTCCGTCCTTT 58.891 52.381 0.00 0.00 0.00 3.11
3668 4757 1.288335 AGATGTACTCCCTCCGTCCTT 59.712 52.381 0.00 0.00 0.00 3.36
3669 4758 0.927767 AGATGTACTCCCTCCGTCCT 59.072 55.000 0.00 0.00 0.00 3.85
3670 4759 1.777941 AAGATGTACTCCCTCCGTCC 58.222 55.000 0.00 0.00 0.00 4.79
3671 4760 3.067883 GGTAAAGATGTACTCCCTCCGTC 59.932 52.174 0.00 0.00 0.00 4.79
3672 4761 3.029570 GGTAAAGATGTACTCCCTCCGT 58.970 50.000 0.00 0.00 0.00 4.69
3673 4762 3.297736 AGGTAAAGATGTACTCCCTCCG 58.702 50.000 0.00 0.00 0.00 4.63
3674 4763 6.997942 ATTAGGTAAAGATGTACTCCCTCC 57.002 41.667 0.00 0.00 0.00 4.30
3691 4780 9.355916 GAAAGCCTTCATCCTTTATTATTAGGT 57.644 33.333 0.00 0.00 31.85 3.08
3692 4781 9.354673 TGAAAGCCTTCATCCTTTATTATTAGG 57.645 33.333 0.00 0.00 36.62 2.69
3707 4796 4.908601 TGGAGAACTATGAAAGCCTTCA 57.091 40.909 0.00 0.00 45.53 3.02
3708 4797 5.526846 CAGATGGAGAACTATGAAAGCCTTC 59.473 44.000 0.00 0.00 0.00 3.46
3709 4798 5.045286 ACAGATGGAGAACTATGAAAGCCTT 60.045 40.000 0.00 0.00 0.00 4.35
3710 4799 4.472833 ACAGATGGAGAACTATGAAAGCCT 59.527 41.667 0.00 0.00 0.00 4.58
3711 4800 4.775236 ACAGATGGAGAACTATGAAAGCC 58.225 43.478 0.00 0.00 0.00 4.35
3712 4801 5.293079 GTGACAGATGGAGAACTATGAAAGC 59.707 44.000 0.00 0.00 0.00 3.51
3713 4802 6.401394 TGTGACAGATGGAGAACTATGAAAG 58.599 40.000 0.00 0.00 0.00 2.62
3714 4803 6.358974 TGTGACAGATGGAGAACTATGAAA 57.641 37.500 0.00 0.00 0.00 2.69
3715 4804 6.550938 ATGTGACAGATGGAGAACTATGAA 57.449 37.500 0.00 0.00 0.00 2.57
3716 4805 7.846101 ATATGTGACAGATGGAGAACTATGA 57.154 36.000 0.00 0.00 0.00 2.15
3717 4806 8.899427 AAATATGTGACAGATGGAGAACTATG 57.101 34.615 0.00 0.00 0.00 2.23
3723 4812 9.860898 CGAATATAAATATGTGACAGATGGAGA 57.139 33.333 0.00 0.00 0.00 3.71
3724 4813 9.645059 ACGAATATAAATATGTGACAGATGGAG 57.355 33.333 0.00 0.00 0.00 3.86
3725 4814 9.996554 AACGAATATAAATATGTGACAGATGGA 57.003 29.630 0.00 0.00 0.00 3.41
3745 4834 8.911662 GTTGCATTAACACAAAATCTAACGAAT 58.088 29.630 0.00 0.00 39.16 3.34
3746 4835 7.380065 GGTTGCATTAACACAAAATCTAACGAA 59.620 33.333 0.00 0.00 41.18 3.85
3747 4836 6.858993 GGTTGCATTAACACAAAATCTAACGA 59.141 34.615 0.00 0.00 41.18 3.85
3748 4837 6.638873 TGGTTGCATTAACACAAAATCTAACG 59.361 34.615 0.00 0.00 41.18 3.18
3749 4838 7.865385 TCTGGTTGCATTAACACAAAATCTAAC 59.135 33.333 0.00 0.00 41.18 2.34
3750 4839 7.946207 TCTGGTTGCATTAACACAAAATCTAA 58.054 30.769 0.00 0.00 41.18 2.10
3751 4840 7.517614 TCTGGTTGCATTAACACAAAATCTA 57.482 32.000 0.00 0.00 41.18 1.98
3752 4841 6.403866 TCTGGTTGCATTAACACAAAATCT 57.596 33.333 0.00 0.00 41.18 2.40
3753 4842 6.922957 TCTTCTGGTTGCATTAACACAAAATC 59.077 34.615 0.00 0.00 41.18 2.17
3754 4843 6.815089 TCTTCTGGTTGCATTAACACAAAAT 58.185 32.000 0.00 0.00 41.18 1.82
3755 4844 6.214191 TCTTCTGGTTGCATTAACACAAAA 57.786 33.333 0.00 0.00 41.18 2.44
3756 4845 5.735922 GCTCTTCTGGTTGCATTAACACAAA 60.736 40.000 0.00 0.00 41.18 2.83
3757 4846 4.261572 GCTCTTCTGGTTGCATTAACACAA 60.262 41.667 0.00 0.00 41.18 3.33
3758 4847 3.253188 GCTCTTCTGGTTGCATTAACACA 59.747 43.478 0.00 0.00 41.18 3.72
3759 4848 3.503748 AGCTCTTCTGGTTGCATTAACAC 59.496 43.478 0.00 0.00 41.18 3.32
3760 4849 3.754965 AGCTCTTCTGGTTGCATTAACA 58.245 40.909 0.00 0.00 41.18 2.41
3761 4850 4.201861 GCTAGCTCTTCTGGTTGCATTAAC 60.202 45.833 7.70 0.00 36.51 2.01
3762 4851 3.941483 GCTAGCTCTTCTGGTTGCATTAA 59.059 43.478 7.70 0.00 36.51 1.40
3763 4852 3.055167 TGCTAGCTCTTCTGGTTGCATTA 60.055 43.478 17.23 0.00 40.07 1.90
3764 4853 2.290514 TGCTAGCTCTTCTGGTTGCATT 60.291 45.455 17.23 0.00 40.07 3.56
3765 4854 1.280133 TGCTAGCTCTTCTGGTTGCAT 59.720 47.619 17.23 0.00 40.07 3.96
3766 4855 0.686789 TGCTAGCTCTTCTGGTTGCA 59.313 50.000 17.23 0.00 41.89 4.08
3767 4856 2.035530 ATGCTAGCTCTTCTGGTTGC 57.964 50.000 17.23 0.00 36.89 4.17
3768 4857 2.681848 CCAATGCTAGCTCTTCTGGTTG 59.318 50.000 17.23 7.71 0.00 3.77
3769 4858 2.307098 ACCAATGCTAGCTCTTCTGGTT 59.693 45.455 17.23 4.02 31.71 3.67
3770 4859 1.912043 ACCAATGCTAGCTCTTCTGGT 59.088 47.619 17.23 16.53 0.00 4.00
3771 4860 2.286872 CACCAATGCTAGCTCTTCTGG 58.713 52.381 17.23 15.94 0.00 3.86
3772 4861 2.983229 ACACCAATGCTAGCTCTTCTG 58.017 47.619 17.23 8.33 0.00 3.02
3773 4862 3.341823 CAACACCAATGCTAGCTCTTCT 58.658 45.455 17.23 0.00 0.00 2.85
3774 4863 2.421424 CCAACACCAATGCTAGCTCTTC 59.579 50.000 17.23 0.00 0.00 2.87
3775 4864 2.224867 ACCAACACCAATGCTAGCTCTT 60.225 45.455 17.23 6.78 0.00 2.85
3776 4865 1.352352 ACCAACACCAATGCTAGCTCT 59.648 47.619 17.23 0.00 0.00 4.09
3777 4866 1.740025 GACCAACACCAATGCTAGCTC 59.260 52.381 17.23 0.00 0.00 4.09
3778 4867 1.073763 TGACCAACACCAATGCTAGCT 59.926 47.619 17.23 0.00 0.00 3.32
3779 4868 1.533625 TGACCAACACCAATGCTAGC 58.466 50.000 8.10 8.10 0.00 3.42
3780 4869 6.455360 AATTATGACCAACACCAATGCTAG 57.545 37.500 0.00 0.00 0.00 3.42
3781 4870 6.849085 AAATTATGACCAACACCAATGCTA 57.151 33.333 0.00 0.00 0.00 3.49
3782 4871 5.743636 AAATTATGACCAACACCAATGCT 57.256 34.783 0.00 0.00 0.00 3.79
3783 4872 6.042143 CCTAAATTATGACCAACACCAATGC 58.958 40.000 0.00 0.00 0.00 3.56
3784 4873 6.154363 ACCCTAAATTATGACCAACACCAATG 59.846 38.462 0.00 0.00 0.00 2.82
3785 4874 6.260663 ACCCTAAATTATGACCAACACCAAT 58.739 36.000 0.00 0.00 0.00 3.16
3786 4875 5.646215 ACCCTAAATTATGACCAACACCAA 58.354 37.500 0.00 0.00 0.00 3.67
3787 4876 5.263872 ACCCTAAATTATGACCAACACCA 57.736 39.130 0.00 0.00 0.00 4.17
3788 4877 5.949952 AGAACCCTAAATTATGACCAACACC 59.050 40.000 0.00 0.00 0.00 4.16
3789 4878 6.657541 TGAGAACCCTAAATTATGACCAACAC 59.342 38.462 0.00 0.00 0.00 3.32
3790 4879 6.785076 TGAGAACCCTAAATTATGACCAACA 58.215 36.000 0.00 0.00 0.00 3.33
3791 4880 7.881775 ATGAGAACCCTAAATTATGACCAAC 57.118 36.000 0.00 0.00 0.00 3.77
3802 4891 8.989131 ACTGCTTACTAATATGAGAACCCTAAA 58.011 33.333 0.00 0.00 0.00 1.85
3803 4892 8.548880 ACTGCTTACTAATATGAGAACCCTAA 57.451 34.615 0.00 0.00 0.00 2.69
3804 4893 7.232941 GGACTGCTTACTAATATGAGAACCCTA 59.767 40.741 0.00 0.00 0.00 3.53
3805 4894 6.042208 GGACTGCTTACTAATATGAGAACCCT 59.958 42.308 0.00 0.00 0.00 4.34
3806 4895 6.224584 GGACTGCTTACTAATATGAGAACCC 58.775 44.000 0.00 0.00 0.00 4.11
3807 4896 6.183360 TGGGACTGCTTACTAATATGAGAACC 60.183 42.308 0.00 0.00 0.00 3.62
3808 4897 6.702282 GTGGGACTGCTTACTAATATGAGAAC 59.298 42.308 0.00 0.00 0.00 3.01
3809 4898 6.183360 GGTGGGACTGCTTACTAATATGAGAA 60.183 42.308 0.00 0.00 0.00 2.87
3810 4899 5.304614 GGTGGGACTGCTTACTAATATGAGA 59.695 44.000 0.00 0.00 0.00 3.27
3811 4900 5.305644 AGGTGGGACTGCTTACTAATATGAG 59.694 44.000 0.00 0.00 0.00 2.90
3812 4901 5.216622 AGGTGGGACTGCTTACTAATATGA 58.783 41.667 0.00 0.00 0.00 2.15
3813 4902 5.070446 TGAGGTGGGACTGCTTACTAATATG 59.930 44.000 0.00 0.00 0.00 1.78
3814 4903 5.216622 TGAGGTGGGACTGCTTACTAATAT 58.783 41.667 0.00 0.00 0.00 1.28
3815 4904 4.616553 TGAGGTGGGACTGCTTACTAATA 58.383 43.478 0.00 0.00 0.00 0.98
3816 4905 3.450904 TGAGGTGGGACTGCTTACTAAT 58.549 45.455 0.00 0.00 0.00 1.73
3817 4906 2.897350 TGAGGTGGGACTGCTTACTAA 58.103 47.619 0.00 0.00 0.00 2.24
3818 4907 2.615986 TGAGGTGGGACTGCTTACTA 57.384 50.000 0.00 0.00 0.00 1.82
3819 4908 1.834263 GATGAGGTGGGACTGCTTACT 59.166 52.381 0.00 0.00 0.00 2.24
3820 4909 1.555075 TGATGAGGTGGGACTGCTTAC 59.445 52.381 0.00 0.00 0.00 2.34
3821 4910 1.555075 GTGATGAGGTGGGACTGCTTA 59.445 52.381 0.00 0.00 0.00 3.09
3822 4911 0.326264 GTGATGAGGTGGGACTGCTT 59.674 55.000 0.00 0.00 0.00 3.91
3823 4912 1.892819 CGTGATGAGGTGGGACTGCT 61.893 60.000 0.00 0.00 0.00 4.24
3824 4913 1.448540 CGTGATGAGGTGGGACTGC 60.449 63.158 0.00 0.00 0.00 4.40
3825 4914 0.108615 GACGTGATGAGGTGGGACTG 60.109 60.000 0.00 0.00 0.00 3.51
3826 4915 0.541998 TGACGTGATGAGGTGGGACT 60.542 55.000 0.00 0.00 0.00 3.85
3827 4916 0.537188 ATGACGTGATGAGGTGGGAC 59.463 55.000 0.00 0.00 0.00 4.46
3828 4917 0.536724 CATGACGTGATGAGGTGGGA 59.463 55.000 9.62 0.00 0.00 4.37
3829 4918 0.462581 CCATGACGTGATGAGGTGGG 60.463 60.000 17.08 0.00 0.00 4.61
3830 4919 0.250234 ACCATGACGTGATGAGGTGG 59.750 55.000 17.08 3.10 0.00 4.61
3831 4920 2.094234 TGTACCATGACGTGATGAGGTG 60.094 50.000 17.08 2.01 0.00 4.00
3832 4921 2.176045 TGTACCATGACGTGATGAGGT 58.824 47.619 17.08 9.31 0.00 3.85
3833 4922 2.959507 TGTACCATGACGTGATGAGG 57.040 50.000 17.08 3.04 0.00 3.86
3834 4923 5.605564 TTTTTGTACCATGACGTGATGAG 57.394 39.130 17.08 9.02 0.00 2.90
3853 4942 0.602905 CGGCGACTGGACCTCTTTTT 60.603 55.000 0.00 0.00 0.00 1.94
3854 4943 1.004918 CGGCGACTGGACCTCTTTT 60.005 57.895 0.00 0.00 0.00 2.27
3855 4944 0.896940 TACGGCGACTGGACCTCTTT 60.897 55.000 16.62 0.00 0.00 2.52
3856 4945 1.303888 TACGGCGACTGGACCTCTT 60.304 57.895 16.62 0.00 0.00 2.85
3857 4946 2.045131 GTACGGCGACTGGACCTCT 61.045 63.158 16.62 0.00 0.00 3.69
3858 4947 2.488820 GTACGGCGACTGGACCTC 59.511 66.667 16.62 0.00 0.00 3.85
3859 4948 3.437795 CGTACGGCGACTGGACCT 61.438 66.667 16.62 0.00 44.77 3.85
3860 4949 3.673867 GACGTACGGCGACTGGACC 62.674 68.421 21.06 0.00 44.77 4.46
3861 4950 1.361668 TAGACGTACGGCGACTGGAC 61.362 60.000 21.06 2.16 44.42 4.02
3862 4951 0.673333 TTAGACGTACGGCGACTGGA 60.673 55.000 21.06 0.00 44.42 3.86
3863 4952 0.379669 ATTAGACGTACGGCGACTGG 59.620 55.000 21.06 1.78 44.42 4.00
3864 4953 1.329906 AGATTAGACGTACGGCGACTG 59.670 52.381 21.06 4.49 44.42 3.51
3865 4954 1.661341 AGATTAGACGTACGGCGACT 58.339 50.000 21.06 7.06 46.20 4.18
3866 4955 2.465210 AAGATTAGACGTACGGCGAC 57.535 50.000 21.06 10.64 44.77 5.19
3867 4956 2.223340 GGAAAGATTAGACGTACGGCGA 60.223 50.000 21.06 10.66 44.77 5.54
3869 4958 2.856557 GTGGAAAGATTAGACGTACGGC 59.143 50.000 21.06 18.27 0.00 5.68
3870 4959 3.103738 CGTGGAAAGATTAGACGTACGG 58.896 50.000 21.06 1.43 0.00 4.02
3871 4960 4.007282 TCGTGGAAAGATTAGACGTACG 57.993 45.455 15.01 15.01 0.00 3.67
3872 4961 4.979388 ACTCGTGGAAAGATTAGACGTAC 58.021 43.478 0.00 0.00 0.00 3.67
3873 4962 5.633830 AACTCGTGGAAAGATTAGACGTA 57.366 39.130 0.00 0.00 0.00 3.57
3874 4963 4.516365 AACTCGTGGAAAGATTAGACGT 57.484 40.909 0.00 0.00 0.00 4.34
3875 4964 5.163982 GGAAAACTCGTGGAAAGATTAGACG 60.164 44.000 0.00 0.00 0.00 4.18
3876 4965 5.121925 GGGAAAACTCGTGGAAAGATTAGAC 59.878 44.000 0.00 0.00 0.00 2.59
3877 4966 5.243207 GGGAAAACTCGTGGAAAGATTAGA 58.757 41.667 0.00 0.00 0.00 2.10
3878 4967 4.395231 GGGGAAAACTCGTGGAAAGATTAG 59.605 45.833 0.00 0.00 0.00 1.73
3879 4968 4.329392 GGGGAAAACTCGTGGAAAGATTA 58.671 43.478 0.00 0.00 0.00 1.75
3880 4969 3.154710 GGGGAAAACTCGTGGAAAGATT 58.845 45.455 0.00 0.00 0.00 2.40
3881 4970 2.791655 GGGGAAAACTCGTGGAAAGAT 58.208 47.619 0.00 0.00 0.00 2.40
3882 4971 1.541670 CGGGGAAAACTCGTGGAAAGA 60.542 52.381 0.00 0.00 0.00 2.52
3883 4972 0.872388 CGGGGAAAACTCGTGGAAAG 59.128 55.000 0.00 0.00 0.00 2.62
3884 4973 0.469070 TCGGGGAAAACTCGTGGAAA 59.531 50.000 0.00 0.00 0.00 3.13
3885 4974 0.688487 ATCGGGGAAAACTCGTGGAA 59.312 50.000 0.00 0.00 0.00 3.53
3886 4975 0.036765 CATCGGGGAAAACTCGTGGA 60.037 55.000 0.00 0.00 0.00 4.02
3887 4976 0.321298 ACATCGGGGAAAACTCGTGG 60.321 55.000 0.00 0.00 0.00 4.94
3888 4977 1.076332 GACATCGGGGAAAACTCGTG 58.924 55.000 0.00 0.00 0.00 4.35
3889 4978 0.974383 AGACATCGGGGAAAACTCGT 59.026 50.000 0.00 0.00 0.00 4.18
3890 4979 1.641577 GAGACATCGGGGAAAACTCG 58.358 55.000 0.00 0.00 0.00 4.18
3891 4980 1.278127 TGGAGACATCGGGGAAAACTC 59.722 52.381 0.00 0.00 33.40 3.01
3892 4981 1.358152 TGGAGACATCGGGGAAAACT 58.642 50.000 0.00 0.00 33.40 2.66
3893 4982 3.948735 TGGAGACATCGGGGAAAAC 57.051 52.632 0.00 0.00 33.40 2.43
3905 4994 2.279120 CAGCCGAGCGATGGAGAC 60.279 66.667 0.00 0.00 0.00 3.36
3906 4995 3.531207 CCAGCCGAGCGATGGAGA 61.531 66.667 7.94 0.00 36.09 3.71
3907 4996 4.598894 CCCAGCCGAGCGATGGAG 62.599 72.222 13.37 3.29 36.09 3.86
3925 5014 1.533753 TGCAAAGCCCAGGGAAAGG 60.534 57.895 10.89 0.00 0.00 3.11
3926 5015 1.667722 GTGCAAAGCCCAGGGAAAG 59.332 57.895 10.89 0.00 0.00 2.62
3927 5016 1.836604 GGTGCAAAGCCCAGGGAAA 60.837 57.895 10.89 0.00 0.00 3.13
3928 5017 2.203625 GGTGCAAAGCCCAGGGAA 60.204 61.111 10.89 0.00 0.00 3.97
3929 5018 3.185203 AGGTGCAAAGCCCAGGGA 61.185 61.111 10.89 0.00 0.00 4.20
3930 5019 2.993264 CAGGTGCAAAGCCCAGGG 60.993 66.667 0.00 0.00 0.00 4.45
3931 5020 3.688159 GCAGGTGCAAAGCCCAGG 61.688 66.667 0.00 0.00 41.59 4.45
3939 5028 3.867880 CCTTCTGGAGTGCAGGTGCAA 62.868 57.143 12.15 0.00 44.33 4.08
3940 5029 2.401699 CCTTCTGGAGTGCAGGTGCA 62.402 60.000 12.15 0.00 41.93 4.57
3941 5030 1.673665 CCTTCTGGAGTGCAGGTGC 60.674 63.158 12.15 0.00 37.22 5.01
3942 5031 1.673665 GCCTTCTGGAGTGCAGGTG 60.674 63.158 12.15 4.97 34.57 4.00
3943 5032 2.753029 GCCTTCTGGAGTGCAGGT 59.247 61.111 12.15 0.00 34.57 4.00
3944 5033 2.045536 GGCCTTCTGGAGTGCAGG 60.046 66.667 12.15 0.00 34.57 4.85
3945 5034 1.073722 TTGGCCTTCTGGAGTGCAG 59.926 57.895 5.07 5.07 34.57 4.41
3946 5035 1.228245 GTTGGCCTTCTGGAGTGCA 60.228 57.895 3.32 0.00 34.57 4.57
3947 5036 0.823356 TTGTTGGCCTTCTGGAGTGC 60.823 55.000 3.32 0.00 34.57 4.40
3948 5037 1.610522 CTTTGTTGGCCTTCTGGAGTG 59.389 52.381 3.32 0.00 34.57 3.51
3949 5038 1.494721 TCTTTGTTGGCCTTCTGGAGT 59.505 47.619 3.32 0.00 34.57 3.85
3950 5039 1.882623 GTCTTTGTTGGCCTTCTGGAG 59.117 52.381 3.32 0.00 34.57 3.86
3951 5040 1.478654 GGTCTTTGTTGGCCTTCTGGA 60.479 52.381 3.32 0.00 34.57 3.86
3952 5041 0.961753 GGTCTTTGTTGGCCTTCTGG 59.038 55.000 3.32 0.00 0.00 3.86
3953 5042 1.882623 GAGGTCTTTGTTGGCCTTCTG 59.117 52.381 3.32 0.00 0.00 3.02
3954 5043 1.494721 TGAGGTCTTTGTTGGCCTTCT 59.505 47.619 3.32 0.00 0.00 2.85
3955 5044 1.981256 TGAGGTCTTTGTTGGCCTTC 58.019 50.000 3.32 0.00 0.00 3.46
3956 5045 2.430694 GTTTGAGGTCTTTGTTGGCCTT 59.569 45.455 3.32 0.00 0.00 4.35
3957 5046 2.031870 GTTTGAGGTCTTTGTTGGCCT 58.968 47.619 3.32 0.00 0.00 5.19
3958 5047 1.068588 GGTTTGAGGTCTTTGTTGGCC 59.931 52.381 0.00 0.00 0.00 5.36
3959 5048 2.031870 AGGTTTGAGGTCTTTGTTGGC 58.968 47.619 0.00 0.00 0.00 4.52
3960 5049 5.451381 GGTTTAGGTTTGAGGTCTTTGTTGG 60.451 44.000 0.00 0.00 0.00 3.77
3961 5050 5.588240 GGTTTAGGTTTGAGGTCTTTGTTG 58.412 41.667 0.00 0.00 0.00 3.33
3962 5051 4.337274 CGGTTTAGGTTTGAGGTCTTTGTT 59.663 41.667 0.00 0.00 0.00 2.83
3963 5052 3.881089 CGGTTTAGGTTTGAGGTCTTTGT 59.119 43.478 0.00 0.00 0.00 2.83
3964 5053 3.881089 ACGGTTTAGGTTTGAGGTCTTTG 59.119 43.478 0.00 0.00 0.00 2.77
3965 5054 3.881089 CACGGTTTAGGTTTGAGGTCTTT 59.119 43.478 0.00 0.00 0.00 2.52
3966 5055 3.118149 ACACGGTTTAGGTTTGAGGTCTT 60.118 43.478 0.00 0.00 0.00 3.01
3967 5056 2.436911 ACACGGTTTAGGTTTGAGGTCT 59.563 45.455 0.00 0.00 0.00 3.85
3968 5057 2.804527 GACACGGTTTAGGTTTGAGGTC 59.195 50.000 0.00 0.00 0.00 3.85
3969 5058 2.486013 GGACACGGTTTAGGTTTGAGGT 60.486 50.000 0.00 0.00 0.00 3.85
3970 5059 2.148768 GGACACGGTTTAGGTTTGAGG 58.851 52.381 0.00 0.00 0.00 3.86
3971 5060 1.796459 CGGACACGGTTTAGGTTTGAG 59.204 52.381 0.00 0.00 36.18 3.02
3972 5061 1.868469 CGGACACGGTTTAGGTTTGA 58.132 50.000 0.00 0.00 36.18 2.69
3973 5062 0.236449 GCGGACACGGTTTAGGTTTG 59.764 55.000 0.00 0.00 41.36 2.93
3974 5063 2.620562 GCGGACACGGTTTAGGTTT 58.379 52.632 0.00 0.00 41.36 3.27
3975 5064 4.366603 GCGGACACGGTTTAGGTT 57.633 55.556 0.00 0.00 41.36 3.50


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.