Multiple sequence alignment - TraesCS5A01G244900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G244900 chr5A 100.000 3383 0 0 1 3383 458476725 458480107 0.000000e+00 6248.0
1 TraesCS5A01G244900 chr5A 87.990 383 28 9 3 380 368133684 368133315 1.440000e-118 436.0
2 TraesCS5A01G244900 chr5A 86.364 396 25 9 3 371 703379684 703380077 4.060000e-109 405.0
3 TraesCS5A01G244900 chr5A 88.506 87 8 2 610 695 491741694 491741779 1.660000e-18 104.0
4 TraesCS5A01G244900 chr2D 95.996 1898 47 9 685 2566 557479567 557477683 0.000000e+00 3057.0
5 TraesCS5A01G244900 chr2D 86.788 386 30 11 3 371 538756361 538756742 8.740000e-111 411.0
6 TraesCS5A01G244900 chr2D 97.778 45 1 0 2565 2609 557477713 557477669 1.010000e-10 78.7
7 TraesCS5A01G244900 chr4D 83.680 1538 203 28 862 2365 464234758 464236281 0.000000e+00 1406.0
8 TraesCS5A01G244900 chr4D 80.767 1435 249 19 953 2377 464238183 464239600 0.000000e+00 1096.0
9 TraesCS5A01G244900 chr4D 88.471 399 22 3 3 377 334200897 334200499 8.550000e-126 460.0
10 TraesCS5A01G244900 chr4D 87.282 401 19 6 3 377 471959585 471959191 2.410000e-116 429.0
11 TraesCS5A01G244900 chr4D 86.486 370 43 4 3 371 482688856 482689219 1.890000e-107 399.0
12 TraesCS5A01G244900 chr4D 85.934 391 27 6 3 371 140902705 140903089 3.160000e-105 392.0
13 TraesCS5A01G244900 chr4D 93.204 103 4 2 428 528 407092965 407092864 7.560000e-32 148.0
14 TraesCS5A01G244900 chr4D 93.204 103 4 2 428 528 446013850 446013749 7.560000e-32 148.0
15 TraesCS5A01G244900 chr4A 84.170 1415 201 15 994 2399 5816725 5815325 0.000000e+00 1351.0
16 TraesCS5A01G244900 chr4A 83.799 1395 198 10 997 2377 604659696 604661076 0.000000e+00 1299.0
17 TraesCS5A01G244900 chr4A 81.011 1385 236 17 994 2369 5813253 5811887 0.000000e+00 1075.0
18 TraesCS5A01G244900 chr4A 95.588 68 3 0 613 680 15815249 15815182 3.570000e-20 110.0
19 TraesCS5A01G244900 chr2A 97.818 779 15 1 2607 3383 35979211 35979989 0.000000e+00 1343.0
20 TraesCS5A01G244900 chr2A 97.930 773 16 0 2611 3383 736426039 736425267 0.000000e+00 1339.0
21 TraesCS5A01G244900 chr2A 97.674 774 15 2 2611 3383 42727018 42727789 0.000000e+00 1327.0
22 TraesCS5A01G244900 chr2A 81.463 410 35 19 3 371 735685085 735685494 7.100000e-77 298.0
23 TraesCS5A01G244900 chr2A 89.720 107 9 1 265 371 104385273 104385169 5.890000e-28 135.0
24 TraesCS5A01G244900 chr2A 94.318 88 3 2 526 612 728143963 728144049 2.120000e-27 134.0
25 TraesCS5A01G244900 chr2A 92.308 91 5 2 524 613 25379014 25378925 9.850000e-26 128.0
26 TraesCS5A01G244900 chr2A 82.530 166 8 4 537 681 470716660 470716495 3.540000e-25 126.0
27 TraesCS5A01G244900 chr2A 92.308 91 4 3 525 614 662603993 662603905 3.540000e-25 126.0
28 TraesCS5A01G244900 chr2A 97.101 69 2 0 610 678 207052229 207052161 2.130000e-22 117.0
29 TraesCS5A01G244900 chr7A 97.806 775 14 2 2611 3383 92381870 92381097 0.000000e+00 1334.0
30 TraesCS5A01G244900 chr7A 97.674 774 17 1 2610 3383 686554133 686553361 0.000000e+00 1328.0
31 TraesCS5A01G244900 chr7A 97.433 779 17 2 2608 3383 520527955 520527177 0.000000e+00 1325.0
32 TraesCS5A01G244900 chr7A 97.548 775 17 1 2609 3383 539107175 539107947 0.000000e+00 1325.0
33 TraesCS5A01G244900 chr7A 88.448 277 24 4 3 273 522997198 522996924 9.050000e-86 327.0
34 TraesCS5A01G244900 chr7A 97.015 67 2 0 613 679 705494773 705494707 2.760000e-21 113.0
35 TraesCS5A01G244900 chr5D 84.031 1409 199 11 997 2393 560187503 560186109 0.000000e+00 1332.0
36 TraesCS5A01G244900 chr5D 78.723 376 37 22 3 345 499408180 499408545 9.510000e-51 211.0
37 TraesCS5A01G244900 chr1A 97.677 775 16 1 2611 3383 556401379 556402153 0.000000e+00 1330.0
38 TraesCS5A01G244900 chr1A 91.579 95 6 2 519 612 581544091 581543998 2.740000e-26 130.0
39 TraesCS5A01G244900 chr1A 72.024 504 105 27 1075 1560 10150994 10151479 2.130000e-22 117.0
40 TraesCS5A01G244900 chr1A 95.588 68 3 0 613 680 397087512 397087445 3.570000e-20 110.0
41 TraesCS5A01G244900 chr3A 96.721 793 23 2 2591 3383 49419220 49420009 0.000000e+00 1317.0
42 TraesCS5A01G244900 chr3A 79.657 408 34 18 3 367 81665533 81665132 7.250000e-62 248.0
43 TraesCS5A01G244900 chr3A 90.722 97 6 3 518 612 741447912 741448007 3.540000e-25 126.0
44 TraesCS5A01G244900 chr3A 90.722 97 6 3 518 612 741537226 741537321 3.540000e-25 126.0
45 TraesCS5A01G244900 chr3A 98.438 64 1 0 2163 2226 126156365 126156428 2.760000e-21 113.0
46 TraesCS5A01G244900 chr3A 90.244 82 6 1 613 692 686528303 686528222 4.620000e-19 106.0
47 TraesCS5A01G244900 chr4B 83.188 1380 206 12 994 2365 580385038 580386399 0.000000e+00 1240.0
48 TraesCS5A01G244900 chr4B 79.930 1430 243 21 960 2377 580526698 580528095 0.000000e+00 1011.0
49 TraesCS5A01G244900 chr4B 93.548 93 4 1 281 371 569015002 569014910 1.640000e-28 137.0
50 TraesCS5A01G244900 chr5B 85.227 528 64 7 952 1479 710499232 710498719 6.430000e-147 531.0
51 TraesCS5A01G244900 chr2B 83.519 449 35 15 3 426 514777793 514778227 1.900000e-102 383.0
52 TraesCS5A01G244900 chrUn 81.446 415 34 8 3 374 221218105 221217691 1.970000e-77 300.0
53 TraesCS5A01G244900 chr7D 83.660 306 35 10 80 371 34062229 34062533 1.200000e-69 274.0
54 TraesCS5A01G244900 chr7D 93.204 103 4 2 428 528 415908472 415908573 7.560000e-32 148.0
55 TraesCS5A01G244900 chr7D 93.204 103 4 2 428 528 474781862 474781963 7.560000e-32 148.0
56 TraesCS5A01G244900 chr7D 95.714 70 3 0 610 679 89789398 89789329 2.760000e-21 113.0
57 TraesCS5A01G244900 chr3D 76.555 418 45 31 3 369 424650277 424650692 2.680000e-41 180.0
58 TraesCS5A01G244900 chr3D 93.204 103 4 2 428 528 91102862 91102761 7.560000e-32 148.0
59 TraesCS5A01G244900 chr3D 93.204 103 4 2 428 528 299219253 299219152 7.560000e-32 148.0
60 TraesCS5A01G244900 chr7B 94.175 103 3 2 428 528 588256186 588256287 1.630000e-33 154.0
61 TraesCS5A01G244900 chr1D 93.204 103 4 2 428 528 311667245 311667144 7.560000e-32 148.0
62 TraesCS5A01G244900 chr1D 93.204 103 4 2 428 528 345944136 345944237 7.560000e-32 148.0
63 TraesCS5A01G244900 chr1D 93.258 89 3 2 525 613 488744163 488744078 9.850000e-26 128.0
64 TraesCS5A01G244900 chr1D 71.944 499 111 22 1075 1560 8854406 8854888 5.930000e-23 119.0
65 TraesCS5A01G244900 chr6A 95.556 90 2 2 525 613 147454322 147454410 3.520000e-30 143.0
66 TraesCS5A01G244900 chr6A 95.588 68 3 0 610 677 38404553 38404620 3.570000e-20 110.0
67 TraesCS5A01G244900 chr1B 93.407 91 4 2 525 614 242246808 242246897 2.120000e-27 134.0
68 TraesCS5A01G244900 chr1B 73.077 364 69 22 1192 1545 12093618 12093962 5.970000e-18 102.0
69 TraesCS5A01G244900 chr3B 95.122 41 2 0 386 426 33334300 33334260 7.840000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G244900 chr5A 458476725 458480107 3382 False 6248.00 6248 100.0000 1 3383 1 chr5A.!!$F1 3382
1 TraesCS5A01G244900 chr2D 557477669 557479567 1898 True 1567.85 3057 96.8870 685 2609 2 chr2D.!!$R1 1924
2 TraesCS5A01G244900 chr4D 464234758 464239600 4842 False 1251.00 1406 82.2235 862 2377 2 chr4D.!!$F3 1515
3 TraesCS5A01G244900 chr4A 604659696 604661076 1380 False 1299.00 1299 83.7990 997 2377 1 chr4A.!!$F1 1380
4 TraesCS5A01G244900 chr4A 5811887 5816725 4838 True 1213.00 1351 82.5905 994 2399 2 chr4A.!!$R2 1405
5 TraesCS5A01G244900 chr2A 35979211 35979989 778 False 1343.00 1343 97.8180 2607 3383 1 chr2A.!!$F1 776
6 TraesCS5A01G244900 chr2A 736425267 736426039 772 True 1339.00 1339 97.9300 2611 3383 1 chr2A.!!$R6 772
7 TraesCS5A01G244900 chr2A 42727018 42727789 771 False 1327.00 1327 97.6740 2611 3383 1 chr2A.!!$F2 772
8 TraesCS5A01G244900 chr7A 92381097 92381870 773 True 1334.00 1334 97.8060 2611 3383 1 chr7A.!!$R1 772
9 TraesCS5A01G244900 chr7A 686553361 686554133 772 True 1328.00 1328 97.6740 2610 3383 1 chr7A.!!$R4 773
10 TraesCS5A01G244900 chr7A 520527177 520527955 778 True 1325.00 1325 97.4330 2608 3383 1 chr7A.!!$R2 775
11 TraesCS5A01G244900 chr7A 539107175 539107947 772 False 1325.00 1325 97.5480 2609 3383 1 chr7A.!!$F1 774
12 TraesCS5A01G244900 chr5D 560186109 560187503 1394 True 1332.00 1332 84.0310 997 2393 1 chr5D.!!$R1 1396
13 TraesCS5A01G244900 chr1A 556401379 556402153 774 False 1330.00 1330 97.6770 2611 3383 1 chr1A.!!$F2 772
14 TraesCS5A01G244900 chr3A 49419220 49420009 789 False 1317.00 1317 96.7210 2591 3383 1 chr3A.!!$F1 792
15 TraesCS5A01G244900 chr4B 580385038 580386399 1361 False 1240.00 1240 83.1880 994 2365 1 chr4B.!!$F1 1371
16 TraesCS5A01G244900 chr4B 580526698 580528095 1397 False 1011.00 1011 79.9300 960 2377 1 chr4B.!!$F2 1417
17 TraesCS5A01G244900 chr5B 710498719 710499232 513 True 531.00 531 85.2270 952 1479 1 chr5B.!!$R1 527

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
120 121 0.035725 TCGAACTAGACCAGCGAGGA 60.036 55.0 5.19 0.00 41.22 3.71 F
553 554 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.0 18.92 18.25 46.66 3.06 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1802 1861 0.248825 GAGCATCGACGAGCATCTGT 60.249 55.0 17.47 1.46 0.00 3.41 R
2468 6118 0.541392 TGCCCGTGCATGATACTCTT 59.459 50.0 7.72 0.00 44.23 2.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.657952 GAAAGGCCCTGGCGTTAT 57.342 55.556 15.73 7.15 46.55 1.89
18 19 2.405143 GAAAGGCCCTGGCGTTATC 58.595 57.895 15.73 11.59 46.55 1.75
19 20 1.436983 GAAAGGCCCTGGCGTTATCG 61.437 60.000 15.73 0.00 46.55 2.92
38 39 2.635141 GCAGTGCGATATCGTTGAAG 57.365 50.000 24.99 13.11 42.22 3.02
39 40 1.332377 GCAGTGCGATATCGTTGAAGC 60.332 52.381 24.99 18.15 42.22 3.86
40 41 1.926510 CAGTGCGATATCGTTGAAGCA 59.073 47.619 24.99 11.32 42.22 3.91
41 42 2.034254 CAGTGCGATATCGTTGAAGCAG 60.034 50.000 24.99 5.32 42.22 4.24
42 43 1.258982 GTGCGATATCGTTGAAGCAGG 59.741 52.381 24.99 0.00 42.22 4.85
43 44 1.134818 TGCGATATCGTTGAAGCAGGT 60.135 47.619 24.99 0.00 42.22 4.00
44 45 1.258982 GCGATATCGTTGAAGCAGGTG 59.741 52.381 24.99 0.00 42.22 4.00
45 46 1.860950 CGATATCGTTGAAGCAGGTGG 59.139 52.381 17.06 0.00 34.11 4.61
46 47 2.213499 GATATCGTTGAAGCAGGTGGG 58.787 52.381 0.00 0.00 0.00 4.61
47 48 0.392461 TATCGTTGAAGCAGGTGGGC 60.392 55.000 0.00 0.00 0.00 5.36
48 49 2.410322 ATCGTTGAAGCAGGTGGGCA 62.410 55.000 0.00 0.00 35.83 5.36
49 50 2.620112 CGTTGAAGCAGGTGGGCAG 61.620 63.158 0.00 0.00 35.83 4.85
50 51 1.529244 GTTGAAGCAGGTGGGCAGT 60.529 57.895 0.00 0.00 35.83 4.40
51 52 1.228245 TTGAAGCAGGTGGGCAGTC 60.228 57.895 0.00 0.00 35.83 3.51
52 53 2.743928 GAAGCAGGTGGGCAGTCG 60.744 66.667 0.00 0.00 35.83 4.18
53 54 3.240134 GAAGCAGGTGGGCAGTCGA 62.240 63.158 0.00 0.00 35.83 4.20
54 55 2.527951 GAAGCAGGTGGGCAGTCGAT 62.528 60.000 0.00 0.00 35.83 3.59
55 56 2.512515 GCAGGTGGGCAGTCGATC 60.513 66.667 0.00 0.00 0.00 3.69
56 57 3.023949 GCAGGTGGGCAGTCGATCT 62.024 63.158 0.00 0.00 0.00 2.75
57 58 1.599047 CAGGTGGGCAGTCGATCTT 59.401 57.895 0.00 0.00 0.00 2.40
58 59 0.036010 CAGGTGGGCAGTCGATCTTT 60.036 55.000 0.00 0.00 0.00 2.52
59 60 1.207089 CAGGTGGGCAGTCGATCTTTA 59.793 52.381 0.00 0.00 0.00 1.85
60 61 2.119495 AGGTGGGCAGTCGATCTTTAT 58.881 47.619 0.00 0.00 0.00 1.40
61 62 2.158900 AGGTGGGCAGTCGATCTTTATG 60.159 50.000 0.00 0.00 0.00 1.90
62 63 2.213499 GTGGGCAGTCGATCTTTATGG 58.787 52.381 0.00 0.00 0.00 2.74
63 64 2.115427 TGGGCAGTCGATCTTTATGGA 58.885 47.619 0.00 0.00 0.00 3.41
64 65 2.705658 TGGGCAGTCGATCTTTATGGAT 59.294 45.455 0.00 0.00 0.00 3.41
65 66 3.901222 TGGGCAGTCGATCTTTATGGATA 59.099 43.478 0.00 0.00 0.00 2.59
66 67 4.346709 TGGGCAGTCGATCTTTATGGATAA 59.653 41.667 0.00 0.00 0.00 1.75
67 68 5.013079 TGGGCAGTCGATCTTTATGGATAAT 59.987 40.000 0.00 0.00 0.00 1.28
68 69 5.352569 GGGCAGTCGATCTTTATGGATAATG 59.647 44.000 0.00 0.00 0.00 1.90
69 70 6.166279 GGCAGTCGATCTTTATGGATAATGA 58.834 40.000 0.00 0.00 33.00 2.57
70 71 6.820656 GGCAGTCGATCTTTATGGATAATGAT 59.179 38.462 7.24 7.24 38.83 2.45
71 72 7.010923 GGCAGTCGATCTTTATGGATAATGATC 59.989 40.741 17.49 17.49 43.41 2.92
90 91 3.143675 CTCATTGGGAGGACACGTG 57.856 57.895 15.48 15.48 40.13 4.49
91 92 0.391661 CTCATTGGGAGGACACGTGG 60.392 60.000 21.57 1.66 40.13 4.94
92 93 2.040544 CATTGGGAGGACACGTGGC 61.041 63.158 21.57 18.48 0.00 5.01
93 94 2.224159 ATTGGGAGGACACGTGGCT 61.224 57.895 23.08 7.27 0.00 4.75
94 95 2.185310 ATTGGGAGGACACGTGGCTC 62.185 60.000 23.08 16.12 0.00 4.70
95 96 4.436998 GGGAGGACACGTGGCTCG 62.437 72.222 23.08 7.50 46.00 5.03
96 97 3.371063 GGAGGACACGTGGCTCGA 61.371 66.667 23.08 0.00 42.86 4.04
97 98 2.711922 GGAGGACACGTGGCTCGAT 61.712 63.158 23.08 4.91 42.86 3.59
98 99 1.381928 GGAGGACACGTGGCTCGATA 61.382 60.000 23.08 0.00 42.86 2.92
99 100 0.248539 GAGGACACGTGGCTCGATAC 60.249 60.000 23.08 2.69 42.86 2.24
100 101 1.226888 GGACACGTGGCTCGATACC 60.227 63.158 23.08 10.83 42.86 2.73
101 102 1.664321 GGACACGTGGCTCGATACCT 61.664 60.000 23.08 0.00 42.86 3.08
102 103 0.248539 GACACGTGGCTCGATACCTC 60.249 60.000 21.57 0.00 42.86 3.85
103 104 1.298413 CACGTGGCTCGATACCTCG 60.298 63.158 20.85 20.85 46.68 4.63
115 116 3.629438 GATACCTCGAACTAGACCAGC 57.371 52.381 0.00 0.00 0.00 4.85
116 117 1.376543 TACCTCGAACTAGACCAGCG 58.623 55.000 0.00 0.00 0.00 5.18
117 118 0.322277 ACCTCGAACTAGACCAGCGA 60.322 55.000 0.00 0.00 0.00 4.93
118 119 0.378962 CCTCGAACTAGACCAGCGAG 59.621 60.000 0.00 0.00 45.67 5.03
119 120 0.378962 CTCGAACTAGACCAGCGAGG 59.621 60.000 0.00 0.00 43.25 4.63
120 121 0.035725 TCGAACTAGACCAGCGAGGA 60.036 55.000 5.19 0.00 41.22 3.71
121 122 1.025812 CGAACTAGACCAGCGAGGAT 58.974 55.000 5.19 0.00 41.22 3.24
122 123 1.268794 CGAACTAGACCAGCGAGGATG 60.269 57.143 5.19 0.00 41.22 3.51
123 124 2.025155 GAACTAGACCAGCGAGGATGA 58.975 52.381 5.19 0.00 41.22 2.92
124 125 2.373335 ACTAGACCAGCGAGGATGAT 57.627 50.000 5.19 0.00 41.22 2.45
125 126 1.959985 ACTAGACCAGCGAGGATGATG 59.040 52.381 5.19 0.00 41.22 3.07
126 127 2.234143 CTAGACCAGCGAGGATGATGA 58.766 52.381 5.19 0.00 41.22 2.92
127 128 1.714541 AGACCAGCGAGGATGATGAT 58.285 50.000 5.19 0.00 41.22 2.45
128 129 1.343789 AGACCAGCGAGGATGATGATG 59.656 52.381 5.19 0.00 41.22 3.07
129 130 1.342496 GACCAGCGAGGATGATGATGA 59.658 52.381 5.19 0.00 41.22 2.92
130 131 1.343789 ACCAGCGAGGATGATGATGAG 59.656 52.381 5.19 0.00 41.22 2.90
131 132 1.337917 CCAGCGAGGATGATGATGAGG 60.338 57.143 0.00 0.00 41.22 3.86
132 133 1.617357 CAGCGAGGATGATGATGAGGA 59.383 52.381 0.00 0.00 0.00 3.71
133 134 1.894466 AGCGAGGATGATGATGAGGAG 59.106 52.381 0.00 0.00 0.00 3.69
134 135 1.067000 GCGAGGATGATGATGAGGAGG 60.067 57.143 0.00 0.00 0.00 4.30
135 136 2.523245 CGAGGATGATGATGAGGAGGA 58.477 52.381 0.00 0.00 0.00 3.71
136 137 2.492881 CGAGGATGATGATGAGGAGGAG 59.507 54.545 0.00 0.00 0.00 3.69
137 138 2.833338 GAGGATGATGATGAGGAGGAGG 59.167 54.545 0.00 0.00 0.00 4.30
138 139 2.453991 AGGATGATGATGAGGAGGAGGA 59.546 50.000 0.00 0.00 0.00 3.71
139 140 2.566724 GGATGATGATGAGGAGGAGGAC 59.433 54.545 0.00 0.00 0.00 3.85
140 141 1.697284 TGATGATGAGGAGGAGGACG 58.303 55.000 0.00 0.00 0.00 4.79
141 142 1.215423 TGATGATGAGGAGGAGGACGA 59.785 52.381 0.00 0.00 0.00 4.20
142 143 1.611491 GATGATGAGGAGGAGGACGAC 59.389 57.143 0.00 0.00 0.00 4.34
143 144 0.626382 TGATGAGGAGGAGGACGACT 59.374 55.000 0.00 0.00 0.00 4.18
144 145 1.314730 GATGAGGAGGAGGACGACTC 58.685 60.000 0.00 0.00 45.84 3.36
152 153 2.692817 GAGGACGACTCGGAGTAGG 58.307 63.158 20.07 13.51 36.29 3.18
153 154 0.107752 GAGGACGACTCGGAGTAGGT 60.108 60.000 20.07 16.26 36.29 3.08
154 155 0.327591 AGGACGACTCGGAGTAGGTT 59.672 55.000 20.07 2.57 0.00 3.50
155 156 0.450983 GGACGACTCGGAGTAGGTTG 59.549 60.000 20.07 7.50 0.00 3.77
156 157 1.163554 GACGACTCGGAGTAGGTTGT 58.836 55.000 20.07 10.21 0.00 3.32
157 158 2.350522 GACGACTCGGAGTAGGTTGTA 58.649 52.381 20.07 0.00 0.00 2.41
158 159 2.351111 GACGACTCGGAGTAGGTTGTAG 59.649 54.545 20.07 4.63 0.00 2.74
159 160 2.289945 ACGACTCGGAGTAGGTTGTAGT 60.290 50.000 20.07 5.15 0.00 2.73
160 161 2.746362 CGACTCGGAGTAGGTTGTAGTT 59.254 50.000 11.27 0.00 0.00 2.24
161 162 3.425892 CGACTCGGAGTAGGTTGTAGTTG 60.426 52.174 11.27 0.00 0.00 3.16
162 163 2.230750 ACTCGGAGTAGGTTGTAGTTGC 59.769 50.000 9.33 0.00 0.00 4.17
163 164 2.230508 CTCGGAGTAGGTTGTAGTTGCA 59.769 50.000 0.00 0.00 0.00 4.08
164 165 2.029649 TCGGAGTAGGTTGTAGTTGCAC 60.030 50.000 0.00 0.00 0.00 4.57
165 166 2.029290 CGGAGTAGGTTGTAGTTGCACT 60.029 50.000 0.00 0.00 0.00 4.40
166 167 3.192001 CGGAGTAGGTTGTAGTTGCACTA 59.808 47.826 0.00 0.00 0.00 2.74
167 168 4.142227 CGGAGTAGGTTGTAGTTGCACTAT 60.142 45.833 0.00 0.00 32.65 2.12
168 169 5.349809 GGAGTAGGTTGTAGTTGCACTATC 58.650 45.833 0.00 0.00 32.65 2.08
169 170 5.127356 GGAGTAGGTTGTAGTTGCACTATCT 59.873 44.000 0.00 0.00 32.65 1.98
170 171 6.320672 GGAGTAGGTTGTAGTTGCACTATCTA 59.679 42.308 0.00 0.00 32.65 1.98
171 172 7.336161 AGTAGGTTGTAGTTGCACTATCTAG 57.664 40.000 0.00 0.00 32.65 2.43
172 173 6.890814 AGTAGGTTGTAGTTGCACTATCTAGT 59.109 38.462 0.00 0.00 32.65 2.57
173 174 6.210287 AGGTTGTAGTTGCACTATCTAGTC 57.790 41.667 0.00 0.00 32.65 2.59
174 175 5.035443 GGTTGTAGTTGCACTATCTAGTCG 58.965 45.833 0.00 0.00 32.65 4.18
175 176 5.392811 GGTTGTAGTTGCACTATCTAGTCGT 60.393 44.000 0.00 0.00 32.65 4.34
176 177 5.892160 TGTAGTTGCACTATCTAGTCGTT 57.108 39.130 0.00 0.00 32.65 3.85
177 178 6.263516 TGTAGTTGCACTATCTAGTCGTTT 57.736 37.500 0.00 0.00 32.65 3.60
178 179 6.684686 TGTAGTTGCACTATCTAGTCGTTTT 58.315 36.000 0.00 0.00 32.65 2.43
179 180 7.149973 TGTAGTTGCACTATCTAGTCGTTTTT 58.850 34.615 0.00 0.00 32.65 1.94
197 198 4.392619 TTTTTATGTCGTTGCACCGTAG 57.607 40.909 2.82 0.00 0.00 3.51
198 199 2.728690 TTATGTCGTTGCACCGTAGT 57.271 45.000 2.82 0.00 0.00 2.73
199 200 2.728690 TATGTCGTTGCACCGTAGTT 57.271 45.000 2.82 0.00 0.00 2.24
200 201 1.873698 ATGTCGTTGCACCGTAGTTT 58.126 45.000 2.82 0.00 0.00 2.66
201 202 1.654317 TGTCGTTGCACCGTAGTTTT 58.346 45.000 2.82 0.00 0.00 2.43
202 203 2.819115 TGTCGTTGCACCGTAGTTTTA 58.181 42.857 2.82 0.00 0.00 1.52
203 204 3.391965 TGTCGTTGCACCGTAGTTTTAT 58.608 40.909 2.82 0.00 0.00 1.40
204 205 3.429543 TGTCGTTGCACCGTAGTTTTATC 59.570 43.478 2.82 0.00 0.00 1.75
205 206 3.676646 GTCGTTGCACCGTAGTTTTATCT 59.323 43.478 2.82 0.00 0.00 1.98
206 207 4.858692 GTCGTTGCACCGTAGTTTTATCTA 59.141 41.667 2.82 0.00 0.00 1.98
207 208 5.517770 GTCGTTGCACCGTAGTTTTATCTAT 59.482 40.000 2.82 0.00 0.00 1.98
208 209 5.745294 TCGTTGCACCGTAGTTTTATCTATC 59.255 40.000 2.82 0.00 0.00 2.08
209 210 5.747197 CGTTGCACCGTAGTTTTATCTATCT 59.253 40.000 0.00 0.00 0.00 1.98
210 211 6.914215 CGTTGCACCGTAGTTTTATCTATCTA 59.086 38.462 0.00 0.00 0.00 1.98
211 212 7.594015 CGTTGCACCGTAGTTTTATCTATCTAT 59.406 37.037 0.00 0.00 0.00 1.98
212 213 9.903682 GTTGCACCGTAGTTTTATCTATCTATA 57.096 33.333 0.00 0.00 0.00 1.31
213 214 9.903682 TTGCACCGTAGTTTTATCTATCTATAC 57.096 33.333 0.00 0.00 0.00 1.47
214 215 9.293404 TGCACCGTAGTTTTATCTATCTATACT 57.707 33.333 0.00 0.00 0.00 2.12
285 286 7.906611 TTTAATATGTATGCAATGTTCGTGC 57.093 32.000 0.00 0.00 42.55 5.34
286 287 2.456942 ATGTATGCAATGTTCGTGCG 57.543 45.000 0.00 0.00 45.27 5.34
287 288 1.433534 TGTATGCAATGTTCGTGCGA 58.566 45.000 0.00 0.00 45.27 5.10
288 289 2.006169 TGTATGCAATGTTCGTGCGAT 58.994 42.857 0.00 0.00 45.27 4.58
289 290 3.190874 TGTATGCAATGTTCGTGCGATA 58.809 40.909 0.00 0.00 45.27 2.92
290 291 3.619038 TGTATGCAATGTTCGTGCGATAA 59.381 39.130 0.00 0.00 45.27 1.75
291 292 2.519002 TGCAATGTTCGTGCGATAAC 57.481 45.000 0.00 0.00 45.27 1.89
292 293 1.201866 TGCAATGTTCGTGCGATAACG 60.202 47.619 0.00 0.00 45.27 3.18
293 294 1.201877 GCAATGTTCGTGCGATAACGT 60.202 47.619 5.78 0.00 43.96 3.99
294 295 2.417780 CAATGTTCGTGCGATAACGTG 58.582 47.619 0.00 0.00 43.96 4.49
295 296 0.368907 ATGTTCGTGCGATAACGTGC 59.631 50.000 0.00 0.00 43.96 5.34
296 297 1.294938 GTTCGTGCGATAACGTGCG 60.295 57.895 0.00 0.00 43.96 5.34
302 303 3.005898 CGATAACGTGCGCTGCAT 58.994 55.556 9.73 0.00 41.91 3.96
303 304 1.348250 CGATAACGTGCGCTGCATT 59.652 52.632 9.73 0.00 41.91 3.56
304 305 0.247655 CGATAACGTGCGCTGCATTT 60.248 50.000 9.73 6.18 41.91 2.32
305 306 1.790123 CGATAACGTGCGCTGCATTTT 60.790 47.619 9.73 5.88 41.91 1.82
306 307 2.535931 CGATAACGTGCGCTGCATTTTA 60.536 45.455 9.73 7.56 41.91 1.52
307 308 2.519002 TAACGTGCGCTGCATTTTAG 57.481 45.000 9.73 0.00 41.91 1.85
308 309 0.729140 AACGTGCGCTGCATTTTAGC 60.729 50.000 9.73 0.00 41.91 3.09
314 315 2.793946 CTGCATTTTAGCGCGGCT 59.206 55.556 8.83 8.38 43.41 5.52
315 316 1.584483 CTGCATTTTAGCGCGGCTG 60.584 57.895 8.83 0.53 40.10 4.85
316 317 2.951227 GCATTTTAGCGCGGCTGC 60.951 61.111 8.83 7.70 40.10 5.25
318 319 1.584483 CATTTTAGCGCGGCTGCTG 60.584 57.895 22.96 10.42 46.70 4.41
319 320 2.764314 ATTTTAGCGCGGCTGCTGG 61.764 57.895 22.96 1.40 46.70 4.85
320 321 3.892740 TTTTAGCGCGGCTGCTGGA 62.893 57.895 22.96 12.50 46.70 3.86
321 322 4.819761 TTAGCGCGGCTGCTGGAG 62.820 66.667 22.96 0.14 46.70 3.86
329 330 3.191539 GCTGCTGGAGCTACACGC 61.192 66.667 14.33 12.02 45.21 5.34
330 331 2.882777 CTGCTGGAGCTACACGCG 60.883 66.667 3.53 3.53 45.59 6.01
335 336 4.547905 GGAGCTACACGCGCGCTA 62.548 66.667 32.58 18.45 45.59 4.26
336 337 2.578713 GAGCTACACGCGCGCTAA 60.579 61.111 32.58 14.34 45.59 3.09
337 338 2.126228 AGCTACACGCGCGCTAAA 60.126 55.556 32.58 12.31 45.59 1.85
338 339 1.480219 GAGCTACACGCGCGCTAAAT 61.480 55.000 32.58 12.13 45.59 1.40
339 340 1.082117 AGCTACACGCGCGCTAAATT 61.082 50.000 32.58 6.00 45.59 1.82
340 341 0.247537 GCTACACGCGCGCTAAATTT 60.248 50.000 32.58 5.07 0.00 1.82
341 342 1.789054 GCTACACGCGCGCTAAATTTT 60.789 47.619 32.58 4.13 0.00 1.82
342 343 2.535335 GCTACACGCGCGCTAAATTTTA 60.535 45.455 32.58 5.58 0.00 1.52
343 344 2.153680 ACACGCGCGCTAAATTTTAG 57.846 45.000 32.58 12.54 0.00 1.85
344 345 0.831414 CACGCGCGCTAAATTTTAGC 59.169 50.000 32.58 24.84 37.21 3.09
352 353 2.101878 GCTAAATTTTAGCGCGTCTGC 58.898 47.619 21.75 2.01 37.91 4.26
354 355 2.247311 AAATTTTAGCGCGTCTGCTG 57.753 45.000 8.43 0.00 46.70 4.41
355 356 0.447801 AATTTTAGCGCGTCTGCTGG 59.552 50.000 8.43 0.00 46.70 4.85
356 357 0.391130 ATTTTAGCGCGTCTGCTGGA 60.391 50.000 8.43 0.00 46.70 3.86
357 358 1.014044 TTTTAGCGCGTCTGCTGGAG 61.014 55.000 8.43 0.00 46.70 3.86
358 359 3.989698 TTAGCGCGTCTGCTGGAGC 62.990 63.158 8.43 0.00 46.70 4.70
380 381 4.389576 GCTGCCCGACGTGCAAAG 62.390 66.667 6.44 0.00 38.46 2.77
381 382 2.972505 CTGCCCGACGTGCAAAGT 60.973 61.111 6.44 0.00 38.46 2.66
382 383 1.666553 CTGCCCGACGTGCAAAGTA 60.667 57.895 6.44 0.00 38.46 2.24
383 384 1.897398 CTGCCCGACGTGCAAAGTAC 61.897 60.000 6.44 0.00 38.46 2.73
384 385 1.666872 GCCCGACGTGCAAAGTACT 60.667 57.895 0.00 0.00 0.00 2.73
385 386 1.226030 GCCCGACGTGCAAAGTACTT 61.226 55.000 1.12 1.12 0.00 2.24
386 387 1.223187 CCCGACGTGCAAAGTACTTT 58.777 50.000 15.22 15.22 0.00 2.66
387 388 1.600485 CCCGACGTGCAAAGTACTTTT 59.400 47.619 18.25 3.60 0.00 2.27
388 389 2.032426 CCCGACGTGCAAAGTACTTTTT 59.968 45.455 18.25 0.00 0.00 1.94
389 390 3.248125 CCCGACGTGCAAAGTACTTTTTA 59.752 43.478 18.25 7.58 0.00 1.52
390 391 4.451557 CCGACGTGCAAAGTACTTTTTAG 58.548 43.478 18.25 12.01 0.00 1.85
391 392 3.898361 CGACGTGCAAAGTACTTTTTAGC 59.102 43.478 18.25 17.97 0.00 3.09
392 393 3.868835 ACGTGCAAAGTACTTTTTAGCG 58.131 40.909 18.25 19.50 0.00 4.26
393 394 2.650297 CGTGCAAAGTACTTTTTAGCGC 59.350 45.455 22.97 22.97 0.00 5.92
394 395 2.650297 GTGCAAAGTACTTTTTAGCGCG 59.350 45.455 18.25 0.00 0.00 6.86
395 396 1.642360 GCAAAGTACTTTTTAGCGCGC 59.358 47.619 26.66 26.66 0.00 6.86
396 397 2.239201 CAAAGTACTTTTTAGCGCGCC 58.761 47.619 30.33 10.31 0.00 6.53
397 398 0.441145 AAGTACTTTTTAGCGCGCCG 59.559 50.000 30.33 11.84 0.00 6.46
415 416 4.781959 CGCATTGGCCGGCTGTTG 62.782 66.667 28.56 20.83 36.38 3.33
416 417 4.440127 GCATTGGCCGGCTGTTGG 62.440 66.667 28.56 13.53 0.00 3.77
417 418 2.676121 CATTGGCCGGCTGTTGGA 60.676 61.111 28.56 6.40 0.00 3.53
418 419 2.361610 ATTGGCCGGCTGTTGGAG 60.362 61.111 28.56 0.00 0.00 3.86
419 420 2.905996 ATTGGCCGGCTGTTGGAGA 61.906 57.895 28.56 3.75 0.00 3.71
420 421 2.215451 ATTGGCCGGCTGTTGGAGAT 62.215 55.000 28.56 6.02 0.00 2.75
421 422 2.825836 GGCCGGCTGTTGGAGATG 60.826 66.667 28.56 0.00 0.00 2.90
422 423 3.512516 GCCGGCTGTTGGAGATGC 61.513 66.667 22.15 0.00 0.00 3.91
423 424 2.270205 CCGGCTGTTGGAGATGCT 59.730 61.111 0.00 0.00 0.00 3.79
424 425 1.817099 CCGGCTGTTGGAGATGCTC 60.817 63.158 0.00 0.00 0.00 4.26
425 426 1.220206 CGGCTGTTGGAGATGCTCT 59.780 57.895 0.00 0.00 0.00 4.09
426 427 1.088340 CGGCTGTTGGAGATGCTCTG 61.088 60.000 0.00 0.00 0.00 3.35
427 428 0.251354 GGCTGTTGGAGATGCTCTGA 59.749 55.000 0.00 0.00 0.00 3.27
428 429 1.134159 GGCTGTTGGAGATGCTCTGAT 60.134 52.381 0.00 0.00 0.00 2.90
429 430 2.103771 GGCTGTTGGAGATGCTCTGATA 59.896 50.000 0.00 0.00 0.00 2.15
430 431 3.391965 GCTGTTGGAGATGCTCTGATAG 58.608 50.000 0.00 0.00 0.00 2.08
431 432 3.069300 GCTGTTGGAGATGCTCTGATAGA 59.931 47.826 0.00 0.00 0.00 1.98
432 433 4.262549 GCTGTTGGAGATGCTCTGATAGAT 60.263 45.833 0.00 0.00 0.00 1.98
433 434 5.465532 TGTTGGAGATGCTCTGATAGATC 57.534 43.478 0.00 0.00 0.00 2.75
434 435 5.146298 TGTTGGAGATGCTCTGATAGATCT 58.854 41.667 0.00 0.00 0.00 2.75
435 436 5.010820 TGTTGGAGATGCTCTGATAGATCTG 59.989 44.000 5.18 0.00 0.00 2.90
436 437 4.995536 TGGAGATGCTCTGATAGATCTGA 58.004 43.478 5.18 0.00 34.30 3.27
444 445 5.725325 CTCTGATAGATCTGAGCCATTGA 57.275 43.478 5.18 0.00 42.95 2.57
445 446 6.288941 CTCTGATAGATCTGAGCCATTGAT 57.711 41.667 5.18 0.00 42.95 2.57
446 447 6.683312 TCTGATAGATCTGAGCCATTGATT 57.317 37.500 5.18 0.00 32.14 2.57
447 448 7.075851 TCTGATAGATCTGAGCCATTGATTT 57.924 36.000 5.18 0.00 32.14 2.17
448 449 6.935208 TCTGATAGATCTGAGCCATTGATTTG 59.065 38.462 5.18 0.00 32.14 2.32
449 450 6.834107 TGATAGATCTGAGCCATTGATTTGA 58.166 36.000 5.18 0.00 0.00 2.69
450 451 7.459234 TGATAGATCTGAGCCATTGATTTGAT 58.541 34.615 5.18 0.00 0.00 2.57
451 452 7.942894 TGATAGATCTGAGCCATTGATTTGATT 59.057 33.333 5.18 0.00 0.00 2.57
452 453 9.445878 GATAGATCTGAGCCATTGATTTGATTA 57.554 33.333 5.18 0.00 0.00 1.75
453 454 9.803507 ATAGATCTGAGCCATTGATTTGATTAA 57.196 29.630 5.18 0.00 0.00 1.40
454 455 8.529424 AGATCTGAGCCATTGATTTGATTAAA 57.471 30.769 0.00 0.00 0.00 1.52
455 456 9.144298 AGATCTGAGCCATTGATTTGATTAAAT 57.856 29.630 0.00 0.00 39.16 1.40
458 459 9.412460 TCTGAGCCATTGATTTGATTAAATAGT 57.588 29.630 0.00 0.00 36.66 2.12
459 460 9.459640 CTGAGCCATTGATTTGATTAAATAGTG 57.540 33.333 0.00 0.00 36.66 2.74
460 461 8.415553 TGAGCCATTGATTTGATTAAATAGTGG 58.584 33.333 12.59 12.59 36.66 4.00
461 462 8.310122 AGCCATTGATTTGATTAAATAGTGGT 57.690 30.769 15.79 6.43 36.66 4.16
462 463 8.416329 AGCCATTGATTTGATTAAATAGTGGTC 58.584 33.333 15.79 11.10 36.66 4.02
463 464 8.416329 GCCATTGATTTGATTAAATAGTGGTCT 58.584 33.333 15.79 0.00 36.66 3.85
464 465 9.740239 CCATTGATTTGATTAAATAGTGGTCTG 57.260 33.333 0.00 0.00 36.66 3.51
478 479 8.611051 AATAGTGGTCTGATTTACTCTTACCT 57.389 34.615 0.00 0.00 33.18 3.08
479 480 6.936968 AGTGGTCTGATTTACTCTTACCTT 57.063 37.500 0.00 0.00 33.18 3.50
480 481 6.937392 AGTGGTCTGATTTACTCTTACCTTC 58.063 40.000 0.00 0.00 33.18 3.46
481 482 6.726764 AGTGGTCTGATTTACTCTTACCTTCT 59.273 38.462 0.00 0.00 33.18 2.85
482 483 7.235812 AGTGGTCTGATTTACTCTTACCTTCTT 59.764 37.037 0.00 0.00 33.18 2.52
483 484 8.529476 GTGGTCTGATTTACTCTTACCTTCTTA 58.471 37.037 0.00 0.00 33.18 2.10
484 485 9.268282 TGGTCTGATTTACTCTTACCTTCTTAT 57.732 33.333 0.00 0.00 33.18 1.73
485 486 9.752961 GGTCTGATTTACTCTTACCTTCTTATC 57.247 37.037 0.00 0.00 0.00 1.75
493 494 7.741554 ACTCTTACCTTCTTATCTTCCATGT 57.258 36.000 0.00 0.00 0.00 3.21
494 495 7.560368 ACTCTTACCTTCTTATCTTCCATGTG 58.440 38.462 0.00 0.00 0.00 3.21
495 496 6.889198 TCTTACCTTCTTATCTTCCATGTGG 58.111 40.000 0.00 0.00 0.00 4.17
496 497 6.672218 TCTTACCTTCTTATCTTCCATGTGGA 59.328 38.462 0.00 0.00 43.73 4.02
508 509 4.235079 TCCATGTGGAAATGAGGGTAAG 57.765 45.455 0.00 0.00 42.18 2.34
509 510 3.849574 TCCATGTGGAAATGAGGGTAAGA 59.150 43.478 0.00 0.00 42.18 2.10
510 511 4.080356 TCCATGTGGAAATGAGGGTAAGAG 60.080 45.833 0.00 0.00 42.18 2.85
511 512 4.202441 CATGTGGAAATGAGGGTAAGAGG 58.798 47.826 0.00 0.00 0.00 3.69
512 513 2.576191 TGTGGAAATGAGGGTAAGAGGG 59.424 50.000 0.00 0.00 0.00 4.30
513 514 2.844348 GTGGAAATGAGGGTAAGAGGGA 59.156 50.000 0.00 0.00 0.00 4.20
514 515 3.115390 TGGAAATGAGGGTAAGAGGGAG 58.885 50.000 0.00 0.00 0.00 4.30
515 516 2.158740 GGAAATGAGGGTAAGAGGGAGC 60.159 54.545 0.00 0.00 0.00 4.70
516 517 2.270434 AATGAGGGTAAGAGGGAGCA 57.730 50.000 0.00 0.00 0.00 4.26
517 518 2.503869 ATGAGGGTAAGAGGGAGCAT 57.496 50.000 0.00 0.00 0.00 3.79
518 519 1.500474 TGAGGGTAAGAGGGAGCATG 58.500 55.000 0.00 0.00 0.00 4.06
519 520 1.273838 TGAGGGTAAGAGGGAGCATGT 60.274 52.381 0.00 0.00 0.00 3.21
520 521 1.840635 GAGGGTAAGAGGGAGCATGTT 59.159 52.381 0.00 0.00 0.00 2.71
521 522 3.039011 GAGGGTAAGAGGGAGCATGTTA 58.961 50.000 0.00 0.00 0.00 2.41
522 523 3.454812 GAGGGTAAGAGGGAGCATGTTAA 59.545 47.826 0.00 0.00 0.00 2.01
523 524 3.850173 AGGGTAAGAGGGAGCATGTTAAA 59.150 43.478 0.00 0.00 0.00 1.52
524 525 4.291249 AGGGTAAGAGGGAGCATGTTAAAA 59.709 41.667 0.00 0.00 0.00 1.52
525 526 5.044105 AGGGTAAGAGGGAGCATGTTAAAAT 60.044 40.000 0.00 0.00 0.00 1.82
526 527 5.656859 GGGTAAGAGGGAGCATGTTAAAATT 59.343 40.000 0.00 0.00 0.00 1.82
527 528 6.831868 GGGTAAGAGGGAGCATGTTAAAATTA 59.168 38.462 0.00 0.00 0.00 1.40
528 529 7.505923 GGGTAAGAGGGAGCATGTTAAAATTAT 59.494 37.037 0.00 0.00 0.00 1.28
529 530 8.914011 GGTAAGAGGGAGCATGTTAAAATTATT 58.086 33.333 0.00 0.00 0.00 1.40
548 549 1.989706 TTTTTGGGTGTGTCTAGGGC 58.010 50.000 0.00 0.00 0.00 5.19
549 550 0.847373 TTTTGGGTGTGTCTAGGGCA 59.153 50.000 0.00 0.00 0.00 5.36
550 551 0.109723 TTTGGGTGTGTCTAGGGCAC 59.890 55.000 10.20 10.20 37.37 5.01
551 552 1.057275 TTGGGTGTGTCTAGGGCACA 61.057 55.000 14.22 14.22 43.60 4.57
552 553 0.840288 TGGGTGTGTCTAGGGCACAT 60.840 55.000 18.92 0.00 46.66 3.21
553 554 0.107654 GGGTGTGTCTAGGGCACATC 60.108 60.000 18.92 18.25 46.66 3.06
554 555 0.905357 GGTGTGTCTAGGGCACATCT 59.095 55.000 18.92 0.00 46.66 2.90
555 556 2.108168 GGTGTGTCTAGGGCACATCTA 58.892 52.381 18.92 0.21 46.66 1.98
556 557 2.101582 GGTGTGTCTAGGGCACATCTAG 59.898 54.545 18.92 0.00 46.66 2.43
557 558 3.024547 GTGTGTCTAGGGCACATCTAGA 58.975 50.000 18.92 0.00 46.66 2.43
558 559 3.639094 GTGTGTCTAGGGCACATCTAGAT 59.361 47.826 18.92 0.00 46.66 1.98
559 560 3.638627 TGTGTCTAGGGCACATCTAGATG 59.361 47.826 27.63 27.63 43.25 2.90
575 576 8.543862 CATCTAGATGTGCTCTAATTATTGCA 57.456 34.615 22.42 8.01 36.02 4.08
585 586 8.146479 TGCTCTAATTATTGCACATCTAAGTG 57.854 34.615 8.01 0.00 42.37 3.16
586 587 7.986889 TGCTCTAATTATTGCACATCTAAGTGA 59.013 33.333 8.01 0.00 42.05 3.41
587 588 8.494347 GCTCTAATTATTGCACATCTAAGTGAG 58.506 37.037 0.00 0.00 42.05 3.51
588 589 9.539825 CTCTAATTATTGCACATCTAAGTGAGT 57.460 33.333 0.00 0.00 42.05 3.41
589 590 9.317936 TCTAATTATTGCACATCTAAGTGAGTG 57.682 33.333 0.00 0.00 42.05 3.51
590 591 9.317936 CTAATTATTGCACATCTAAGTGAGTGA 57.682 33.333 0.00 0.00 42.05 3.41
591 592 8.565896 AATTATTGCACATCTAAGTGAGTGAA 57.434 30.769 0.00 0.00 42.05 3.18
592 593 7.601073 TTATTGCACATCTAAGTGAGTGAAG 57.399 36.000 0.00 0.00 42.05 3.02
593 594 3.329386 TGCACATCTAAGTGAGTGAAGC 58.671 45.455 0.00 0.00 42.05 3.86
594 595 3.244181 TGCACATCTAAGTGAGTGAAGCA 60.244 43.478 0.00 0.00 42.05 3.91
595 596 3.748048 GCACATCTAAGTGAGTGAAGCAA 59.252 43.478 0.00 0.00 42.05 3.91
596 597 4.142945 GCACATCTAAGTGAGTGAAGCAAG 60.143 45.833 0.00 0.00 42.05 4.01
597 598 3.999663 ACATCTAAGTGAGTGAAGCAAGC 59.000 43.478 0.00 0.00 0.00 4.01
598 599 3.751479 TCTAAGTGAGTGAAGCAAGCA 57.249 42.857 0.00 0.00 0.00 3.91
599 600 4.277515 TCTAAGTGAGTGAAGCAAGCAT 57.722 40.909 0.00 0.00 0.00 3.79
600 601 5.405935 TCTAAGTGAGTGAAGCAAGCATA 57.594 39.130 0.00 0.00 0.00 3.14
601 602 5.793817 TCTAAGTGAGTGAAGCAAGCATAA 58.206 37.500 0.00 0.00 0.00 1.90
602 603 6.230472 TCTAAGTGAGTGAAGCAAGCATAAA 58.770 36.000 0.00 0.00 0.00 1.40
603 604 5.368256 AAGTGAGTGAAGCAAGCATAAAG 57.632 39.130 0.00 0.00 0.00 1.85
604 605 4.392940 AGTGAGTGAAGCAAGCATAAAGT 58.607 39.130 0.00 0.00 0.00 2.66
605 606 5.551233 AGTGAGTGAAGCAAGCATAAAGTA 58.449 37.500 0.00 0.00 0.00 2.24
606 607 5.997746 AGTGAGTGAAGCAAGCATAAAGTAA 59.002 36.000 0.00 0.00 0.00 2.24
607 608 6.486657 AGTGAGTGAAGCAAGCATAAAGTAAA 59.513 34.615 0.00 0.00 0.00 2.01
608 609 7.013274 AGTGAGTGAAGCAAGCATAAAGTAAAA 59.987 33.333 0.00 0.00 0.00 1.52
609 610 7.647715 GTGAGTGAAGCAAGCATAAAGTAAAAA 59.352 33.333 0.00 0.00 0.00 1.94
637 638 9.664332 AATCAATGACATAGGACTTAGATATGC 57.336 33.333 0.00 0.00 31.44 3.14
638 639 8.193953 TCAATGACATAGGACTTAGATATGCA 57.806 34.615 0.00 0.00 31.44 3.96
639 640 8.650490 TCAATGACATAGGACTTAGATATGCAA 58.350 33.333 0.00 0.00 31.44 4.08
640 641 9.445878 CAATGACATAGGACTTAGATATGCAAT 57.554 33.333 0.00 0.00 31.44 3.56
649 650 9.401058 AGGACTTAGATATGCAATATTTATGGC 57.599 33.333 0.00 0.00 40.26 4.40
650 651 9.177608 GGACTTAGATATGCAATATTTATGGCA 57.822 33.333 2.22 2.22 45.92 4.92
651 652 9.994432 GACTTAGATATGCAATATTTATGGCAC 57.006 33.333 1.76 0.00 44.77 5.01
652 653 9.519191 ACTTAGATATGCAATATTTATGGCACA 57.481 29.630 1.76 0.00 44.77 4.57
655 656 8.818622 AGATATGCAATATTTATGGCACATCT 57.181 30.769 12.83 12.83 46.66 2.90
658 659 9.910267 ATATGCAATATTTATGGCACATCTAGA 57.090 29.630 1.76 0.00 44.77 2.43
659 660 8.818622 ATGCAATATTTATGGCACATCTAGAT 57.181 30.769 0.00 0.00 44.77 1.98
660 661 8.683615 ATGCAATATTTATGGCACATCTAGATG 58.316 33.333 27.63 27.63 44.77 2.90
844 845 2.679837 CAAATGGAGGAGACGTTGGATG 59.320 50.000 0.00 0.00 0.00 3.51
886 887 0.667993 AACCAACCATCACGTGCTTG 59.332 50.000 11.67 10.87 0.00 4.01
909 912 1.437986 CTACCTACTCTGCCACGCC 59.562 63.158 0.00 0.00 0.00 5.68
939 942 1.207329 CTACCTACCTCCTGCACCAAC 59.793 57.143 0.00 0.00 0.00 3.77
950 955 2.080693 CTGCACCAACAGCGGTATAAA 58.919 47.619 0.00 0.00 37.07 1.40
1060 1099 2.678580 TCAGGCCGTCCGACATCA 60.679 61.111 0.00 0.00 37.47 3.07
1061 1100 2.264480 CAGGCCGTCCGACATCAA 59.736 61.111 0.00 0.00 37.47 2.57
1062 1101 2.100631 CAGGCCGTCCGACATCAAC 61.101 63.158 0.00 0.00 37.47 3.18
1613 1664 1.067985 CACGCTCATCGCTGATCCTAT 60.068 52.381 0.00 0.00 43.23 2.57
1663 1714 4.778415 CCACTGACGACGGCGAGG 62.778 72.222 22.49 9.44 41.64 4.63
1693 1744 2.125753 CCAGCAGCGTGTCCTCTC 60.126 66.667 0.00 0.00 0.00 3.20
1773 1832 2.357034 GACACGCTTGCCCGAGAA 60.357 61.111 0.00 0.00 0.00 2.87
2385 6030 5.220491 GCAAGAGCAAGTCTATCTTTAACGG 60.220 44.000 0.00 0.00 41.58 4.44
2428 6078 3.191162 TGCATGTTCTTGATTGGTGTAGC 59.809 43.478 0.00 0.00 0.00 3.58
2453 6103 4.513318 GCTTTATCCAAGACATCTACCAGC 59.487 45.833 0.00 0.00 33.80 4.85
2466 6116 4.238761 TCTACCAGCGCAAGTATCATAC 57.761 45.455 11.47 0.00 41.68 2.39
2467 6117 3.889538 TCTACCAGCGCAAGTATCATACT 59.110 43.478 11.47 0.00 41.73 2.12
2468 6118 5.067954 TCTACCAGCGCAAGTATCATACTA 58.932 41.667 11.47 0.00 38.26 1.82
2488 6138 7.980609 ATACTAAGAGTATCATGCACGGGCAT 61.981 42.308 22.04 22.04 45.17 4.40
2489 6139 9.365150 ATACTAAGAGTATCATGCACGGGCATT 62.365 40.741 25.55 12.88 46.80 3.56
2624 6274 8.049117 TCATCTTGCCATCACTAGTAGAAAAAT 58.951 33.333 3.59 0.00 0.00 1.82
2906 6556 0.170116 CGAGCTCGCTCTGTTCTTCT 59.830 55.000 25.07 0.00 40.69 2.85
2907 6557 1.402194 CGAGCTCGCTCTGTTCTTCTT 60.402 52.381 25.07 0.00 40.69 2.52
2968 6618 2.161012 CGAGCTCATCACACATTTTGCT 59.839 45.455 15.40 0.00 0.00 3.91
3130 6784 8.941995 TGGGAGGATATATATATGTGCTAGTC 57.058 38.462 12.45 6.98 0.00 2.59
3205 6859 3.887110 GGTGTGGTTTACTTAGTGCCTTT 59.113 43.478 0.00 0.00 0.00 3.11
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.436983 CGATAACGCCAGGGCCTTTC 61.437 60.000 1.32 0.00 37.98 2.62
2 3 2.189521 CGATAACGCCAGGGCCTT 59.810 61.111 1.32 2.18 37.98 4.35
19 20 1.332377 GCTTCAACGATATCGCACTGC 60.332 52.381 24.59 17.46 44.43 4.40
20 21 1.926510 TGCTTCAACGATATCGCACTG 59.073 47.619 24.59 18.21 44.43 3.66
21 22 2.196749 CTGCTTCAACGATATCGCACT 58.803 47.619 24.59 7.07 44.43 4.40
22 23 1.258982 CCTGCTTCAACGATATCGCAC 59.741 52.381 24.59 8.55 44.43 5.34
23 24 1.134818 ACCTGCTTCAACGATATCGCA 60.135 47.619 24.59 12.15 44.43 5.10
24 25 1.258982 CACCTGCTTCAACGATATCGC 59.741 52.381 24.59 7.99 44.43 4.58
25 26 1.860950 CCACCTGCTTCAACGATATCG 59.139 52.381 23.18 23.18 46.33 2.92
26 27 2.213499 CCCACCTGCTTCAACGATATC 58.787 52.381 0.00 0.00 0.00 1.63
27 28 1.747206 GCCCACCTGCTTCAACGATAT 60.747 52.381 0.00 0.00 0.00 1.63
28 29 0.392461 GCCCACCTGCTTCAACGATA 60.392 55.000 0.00 0.00 0.00 2.92
29 30 1.675641 GCCCACCTGCTTCAACGAT 60.676 57.895 0.00 0.00 0.00 3.73
30 31 2.281484 GCCCACCTGCTTCAACGA 60.281 61.111 0.00 0.00 0.00 3.85
31 32 2.594303 TGCCCACCTGCTTCAACG 60.594 61.111 0.00 0.00 0.00 4.10
32 33 1.518903 GACTGCCCACCTGCTTCAAC 61.519 60.000 0.00 0.00 0.00 3.18
33 34 1.228245 GACTGCCCACCTGCTTCAA 60.228 57.895 0.00 0.00 0.00 2.69
34 35 2.431683 GACTGCCCACCTGCTTCA 59.568 61.111 0.00 0.00 0.00 3.02
35 36 2.527951 ATCGACTGCCCACCTGCTTC 62.528 60.000 0.00 0.00 0.00 3.86
36 37 2.527951 GATCGACTGCCCACCTGCTT 62.528 60.000 0.00 0.00 0.00 3.91
37 38 3.005539 ATCGACTGCCCACCTGCT 61.006 61.111 0.00 0.00 0.00 4.24
38 39 2.512515 GATCGACTGCCCACCTGC 60.513 66.667 0.00 0.00 0.00 4.85
39 40 0.036010 AAAGATCGACTGCCCACCTG 60.036 55.000 0.00 0.00 0.00 4.00
40 41 1.568504 TAAAGATCGACTGCCCACCT 58.431 50.000 0.00 0.00 0.00 4.00
41 42 2.213499 CATAAAGATCGACTGCCCACC 58.787 52.381 0.00 0.00 0.00 4.61
42 43 2.158957 TCCATAAAGATCGACTGCCCAC 60.159 50.000 0.00 0.00 0.00 4.61
43 44 2.115427 TCCATAAAGATCGACTGCCCA 58.885 47.619 0.00 0.00 0.00 5.36
44 45 2.910688 TCCATAAAGATCGACTGCCC 57.089 50.000 0.00 0.00 0.00 5.36
45 46 6.166279 TCATTATCCATAAAGATCGACTGCC 58.834 40.000 0.00 0.00 0.00 4.85
46 47 7.840342 ATCATTATCCATAAAGATCGACTGC 57.160 36.000 0.00 0.00 27.88 4.40
72 73 0.391661 CCACGTGTCCTCCCAATGAG 60.392 60.000 15.65 0.00 41.07 2.90
73 74 1.676968 CCACGTGTCCTCCCAATGA 59.323 57.895 15.65 0.00 0.00 2.57
74 75 2.040544 GCCACGTGTCCTCCCAATG 61.041 63.158 15.65 0.00 0.00 2.82
75 76 2.185310 GAGCCACGTGTCCTCCCAAT 62.185 60.000 15.65 0.00 0.00 3.16
76 77 2.847234 AGCCACGTGTCCTCCCAA 60.847 61.111 15.65 0.00 0.00 4.12
77 78 3.311110 GAGCCACGTGTCCTCCCA 61.311 66.667 15.65 0.00 0.00 4.37
78 79 4.436998 CGAGCCACGTGTCCTCCC 62.437 72.222 20.92 5.43 37.22 4.30
79 80 1.381928 TATCGAGCCACGTGTCCTCC 61.382 60.000 20.92 9.09 43.13 4.30
80 81 0.248539 GTATCGAGCCACGTGTCCTC 60.249 60.000 15.65 17.33 43.13 3.71
81 82 1.664321 GGTATCGAGCCACGTGTCCT 61.664 60.000 15.65 10.26 43.13 3.85
82 83 1.226888 GGTATCGAGCCACGTGTCC 60.227 63.158 15.65 5.02 43.13 4.02
83 84 0.248539 GAGGTATCGAGCCACGTGTC 60.249 60.000 15.65 0.10 43.13 3.67
84 85 1.807886 GAGGTATCGAGCCACGTGT 59.192 57.895 15.65 0.00 43.13 4.49
85 86 4.711980 GAGGTATCGAGCCACGTG 57.288 61.111 9.08 9.08 43.13 4.49
95 96 2.031857 CGCTGGTCTAGTTCGAGGTATC 60.032 54.545 0.00 0.00 0.00 2.24
96 97 1.948145 CGCTGGTCTAGTTCGAGGTAT 59.052 52.381 0.00 0.00 0.00 2.73
97 98 1.065926 TCGCTGGTCTAGTTCGAGGTA 60.066 52.381 0.00 0.00 0.00 3.08
98 99 0.322277 TCGCTGGTCTAGTTCGAGGT 60.322 55.000 0.00 0.00 0.00 3.85
99 100 0.378962 CTCGCTGGTCTAGTTCGAGG 59.621 60.000 5.65 1.16 41.83 4.63
100 101 0.378962 CCTCGCTGGTCTAGTTCGAG 59.621 60.000 6.35 6.35 44.21 4.04
101 102 0.035725 TCCTCGCTGGTCTAGTTCGA 60.036 55.000 0.00 0.00 37.07 3.71
102 103 1.025812 ATCCTCGCTGGTCTAGTTCG 58.974 55.000 0.00 0.00 37.07 3.95
103 104 2.025155 TCATCCTCGCTGGTCTAGTTC 58.975 52.381 0.00 0.00 37.07 3.01
104 105 2.145397 TCATCCTCGCTGGTCTAGTT 57.855 50.000 0.00 0.00 37.07 2.24
105 106 1.959985 CATCATCCTCGCTGGTCTAGT 59.040 52.381 0.00 0.00 37.07 2.57
106 107 2.234143 TCATCATCCTCGCTGGTCTAG 58.766 52.381 0.00 0.00 37.07 2.43
107 108 2.364972 TCATCATCCTCGCTGGTCTA 57.635 50.000 0.00 0.00 37.07 2.59
108 109 1.343789 CATCATCATCCTCGCTGGTCT 59.656 52.381 0.00 0.00 37.07 3.85
109 110 1.342496 TCATCATCATCCTCGCTGGTC 59.658 52.381 0.00 0.00 37.07 4.02
110 111 1.343789 CTCATCATCATCCTCGCTGGT 59.656 52.381 0.00 0.00 37.07 4.00
111 112 1.337917 CCTCATCATCATCCTCGCTGG 60.338 57.143 0.00 0.00 37.10 4.85
112 113 1.617357 TCCTCATCATCATCCTCGCTG 59.383 52.381 0.00 0.00 0.00 5.18
113 114 1.894466 CTCCTCATCATCATCCTCGCT 59.106 52.381 0.00 0.00 0.00 4.93
114 115 1.067000 CCTCCTCATCATCATCCTCGC 60.067 57.143 0.00 0.00 0.00 5.03
115 116 2.492881 CTCCTCCTCATCATCATCCTCG 59.507 54.545 0.00 0.00 0.00 4.63
116 117 2.833338 CCTCCTCCTCATCATCATCCTC 59.167 54.545 0.00 0.00 0.00 3.71
117 118 2.453991 TCCTCCTCCTCATCATCATCCT 59.546 50.000 0.00 0.00 0.00 3.24
118 119 2.566724 GTCCTCCTCCTCATCATCATCC 59.433 54.545 0.00 0.00 0.00 3.51
119 120 2.230992 CGTCCTCCTCCTCATCATCATC 59.769 54.545 0.00 0.00 0.00 2.92
120 121 2.158400 TCGTCCTCCTCCTCATCATCAT 60.158 50.000 0.00 0.00 0.00 2.45
121 122 1.215423 TCGTCCTCCTCCTCATCATCA 59.785 52.381 0.00 0.00 0.00 3.07
122 123 1.611491 GTCGTCCTCCTCCTCATCATC 59.389 57.143 0.00 0.00 0.00 2.92
123 124 1.216678 AGTCGTCCTCCTCCTCATCAT 59.783 52.381 0.00 0.00 0.00 2.45
124 125 0.626382 AGTCGTCCTCCTCCTCATCA 59.374 55.000 0.00 0.00 0.00 3.07
125 126 1.314730 GAGTCGTCCTCCTCCTCATC 58.685 60.000 0.00 0.00 33.79 2.92
126 127 0.464735 CGAGTCGTCCTCCTCCTCAT 60.465 60.000 3.82 0.00 36.82 2.90
127 128 1.078356 CGAGTCGTCCTCCTCCTCA 60.078 63.158 3.82 0.00 36.82 3.86
128 129 1.820481 CCGAGTCGTCCTCCTCCTC 60.820 68.421 12.31 0.00 36.82 3.71
129 130 2.260088 CTCCGAGTCGTCCTCCTCCT 62.260 65.000 12.31 0.00 36.82 3.69
130 131 1.820481 CTCCGAGTCGTCCTCCTCC 60.820 68.421 12.31 0.00 36.82 4.30
131 132 0.177604 TACTCCGAGTCGTCCTCCTC 59.822 60.000 12.31 0.00 36.82 3.71
132 133 0.178533 CTACTCCGAGTCGTCCTCCT 59.821 60.000 12.31 0.00 36.82 3.69
133 134 0.814812 CCTACTCCGAGTCGTCCTCC 60.815 65.000 12.31 0.00 36.82 4.30
134 135 0.107752 ACCTACTCCGAGTCGTCCTC 60.108 60.000 12.31 0.00 36.80 3.71
135 136 0.327591 AACCTACTCCGAGTCGTCCT 59.672 55.000 12.31 0.00 0.00 3.85
136 137 0.450983 CAACCTACTCCGAGTCGTCC 59.549 60.000 12.31 0.00 0.00 4.79
137 138 1.163554 ACAACCTACTCCGAGTCGTC 58.836 55.000 12.31 0.00 0.00 4.20
138 139 2.289945 ACTACAACCTACTCCGAGTCGT 60.290 50.000 12.31 0.00 0.00 4.34
139 140 2.354259 ACTACAACCTACTCCGAGTCG 58.646 52.381 3.74 5.29 0.00 4.18
140 141 3.672781 GCAACTACAACCTACTCCGAGTC 60.673 52.174 3.74 0.00 0.00 3.36
141 142 2.230750 GCAACTACAACCTACTCCGAGT 59.769 50.000 6.25 6.25 0.00 4.18
142 143 2.230508 TGCAACTACAACCTACTCCGAG 59.769 50.000 0.00 0.00 0.00 4.63
143 144 2.029649 GTGCAACTACAACCTACTCCGA 60.030 50.000 0.00 0.00 0.00 4.55
144 145 2.334838 GTGCAACTACAACCTACTCCG 58.665 52.381 0.00 0.00 0.00 4.63
176 177 3.808726 ACTACGGTGCAACGACATAAAAA 59.191 39.130 34.07 4.22 38.12 1.94
177 178 3.391965 ACTACGGTGCAACGACATAAAA 58.608 40.909 34.07 5.66 38.12 1.52
178 179 3.029320 ACTACGGTGCAACGACATAAA 57.971 42.857 34.07 7.49 38.12 1.40
179 180 2.728690 ACTACGGTGCAACGACATAA 57.271 45.000 34.07 9.35 38.12 1.90
180 181 2.728690 AACTACGGTGCAACGACATA 57.271 45.000 34.07 12.32 38.12 2.29
181 182 1.873698 AAACTACGGTGCAACGACAT 58.126 45.000 34.07 11.70 38.12 3.06
182 183 1.654317 AAAACTACGGTGCAACGACA 58.346 45.000 34.07 17.08 38.12 4.35
183 184 3.676646 AGATAAAACTACGGTGCAACGAC 59.323 43.478 34.07 9.63 38.12 4.34
184 185 3.916761 AGATAAAACTACGGTGCAACGA 58.083 40.909 34.07 13.76 38.12 3.85
185 186 5.747197 AGATAGATAAAACTACGGTGCAACG 59.253 40.000 25.19 25.19 38.12 4.10
186 187 8.813643 ATAGATAGATAAAACTACGGTGCAAC 57.186 34.615 0.00 0.00 0.00 4.17
187 188 9.903682 GTATAGATAGATAAAACTACGGTGCAA 57.096 33.333 0.00 0.00 0.00 4.08
188 189 9.293404 AGTATAGATAGATAAAACTACGGTGCA 57.707 33.333 0.00 0.00 0.00 4.57
259 260 8.802856 GCACGAACATTGCATACATATTAAAAA 58.197 29.630 0.00 0.00 39.93 1.94
260 261 7.164990 CGCACGAACATTGCATACATATTAAAA 59.835 33.333 0.00 0.00 40.20 1.52
261 262 6.630840 CGCACGAACATTGCATACATATTAAA 59.369 34.615 0.00 0.00 40.20 1.52
262 263 6.018669 TCGCACGAACATTGCATACATATTAA 60.019 34.615 0.00 0.00 40.20 1.40
263 264 5.463724 TCGCACGAACATTGCATACATATTA 59.536 36.000 0.00 0.00 40.20 0.98
264 265 4.272261 TCGCACGAACATTGCATACATATT 59.728 37.500 0.00 0.00 40.20 1.28
265 266 3.807071 TCGCACGAACATTGCATACATAT 59.193 39.130 0.00 0.00 40.20 1.78
266 267 3.190874 TCGCACGAACATTGCATACATA 58.809 40.909 0.00 0.00 40.20 2.29
267 268 2.006169 TCGCACGAACATTGCATACAT 58.994 42.857 0.00 0.00 40.20 2.29
268 269 1.433534 TCGCACGAACATTGCATACA 58.566 45.000 0.00 0.00 40.20 2.29
269 270 2.737467 ATCGCACGAACATTGCATAC 57.263 45.000 0.00 0.00 40.20 2.39
270 271 3.302156 CGTTATCGCACGAACATTGCATA 60.302 43.478 0.00 0.00 43.15 3.14
271 272 2.536728 CGTTATCGCACGAACATTGCAT 60.537 45.455 0.00 0.00 43.15 3.96
272 273 1.201866 CGTTATCGCACGAACATTGCA 60.202 47.619 0.00 0.00 43.15 4.08
273 274 1.201877 ACGTTATCGCACGAACATTGC 60.202 47.619 8.36 0.00 43.15 3.56
274 275 2.417780 CACGTTATCGCACGAACATTG 58.582 47.619 8.36 0.00 43.15 2.82
275 276 1.201877 GCACGTTATCGCACGAACATT 60.202 47.619 8.36 0.00 43.15 2.71
276 277 0.368907 GCACGTTATCGCACGAACAT 59.631 50.000 8.36 0.00 43.15 2.71
277 278 1.776580 GCACGTTATCGCACGAACA 59.223 52.632 8.36 0.00 43.15 3.18
278 279 1.294938 CGCACGTTATCGCACGAAC 60.295 57.895 8.36 0.00 43.15 3.95
279 280 3.065853 CGCACGTTATCGCACGAA 58.934 55.556 8.36 0.00 43.15 3.85
285 286 0.247655 AAATGCAGCGCACGTTATCG 60.248 50.000 11.47 0.00 43.04 2.92
286 287 1.895051 AAAATGCAGCGCACGTTATC 58.105 45.000 11.47 0.00 43.04 1.75
287 288 2.791158 GCTAAAATGCAGCGCACGTTAT 60.791 45.455 11.47 0.00 43.04 1.89
288 289 1.465020 GCTAAAATGCAGCGCACGTTA 60.465 47.619 11.47 6.51 43.04 3.18
289 290 0.729140 GCTAAAATGCAGCGCACGTT 60.729 50.000 11.47 6.07 43.04 3.99
290 291 1.154225 GCTAAAATGCAGCGCACGT 60.154 52.632 11.47 0.00 43.04 4.49
291 292 3.666730 GCTAAAATGCAGCGCACG 58.333 55.556 11.47 0.01 43.04 5.34
296 297 2.951227 GCCGCGCTAAAATGCAGC 60.951 61.111 5.56 0.00 35.61 5.25
297 298 1.584483 CAGCCGCGCTAAAATGCAG 60.584 57.895 5.56 0.00 36.40 4.41
298 299 2.484662 CAGCCGCGCTAAAATGCA 59.515 55.556 5.56 0.00 36.40 3.96
299 300 2.951227 GCAGCCGCGCTAAAATGC 60.951 61.111 5.56 4.97 36.40 3.56
300 301 1.584483 CAGCAGCCGCGCTAAAATG 60.584 57.895 5.56 0.00 45.49 2.32
301 302 2.764314 CCAGCAGCCGCGCTAAAAT 61.764 57.895 5.56 0.00 45.49 1.82
302 303 3.430862 CCAGCAGCCGCGCTAAAA 61.431 61.111 5.56 0.00 45.49 1.52
303 304 4.386951 TCCAGCAGCCGCGCTAAA 62.387 61.111 5.56 0.00 45.49 1.85
304 305 4.819761 CTCCAGCAGCCGCGCTAA 62.820 66.667 5.56 1.87 45.49 3.09
313 314 2.882777 CGCGTGTAGCTCCAGCAG 60.883 66.667 0.00 0.00 45.59 4.24
318 319 4.547905 TAGCGCGCGTGTAGCTCC 62.548 66.667 32.35 11.90 45.59 4.70
319 320 1.480219 ATTTAGCGCGCGTGTAGCTC 61.480 55.000 32.35 12.72 45.59 4.09
320 321 1.082117 AATTTAGCGCGCGTGTAGCT 61.082 50.000 32.35 21.20 45.59 3.32
321 322 0.247537 AAATTTAGCGCGCGTGTAGC 60.248 50.000 32.35 14.38 43.95 3.58
322 323 2.153680 AAAATTTAGCGCGCGTGTAG 57.846 45.000 32.35 2.67 0.00 2.74
323 324 2.535335 GCTAAAATTTAGCGCGCGTGTA 60.535 45.455 32.35 20.11 0.00 2.90
324 325 1.789054 GCTAAAATTTAGCGCGCGTGT 60.789 47.619 32.35 21.24 0.00 4.49
325 326 0.831414 GCTAAAATTTAGCGCGCGTG 59.169 50.000 32.35 16.86 0.00 5.34
326 327 3.214066 GCTAAAATTTAGCGCGCGT 57.786 47.368 32.35 20.00 0.00 6.01
332 333 2.101878 GCAGACGCGCTAAAATTTAGC 58.898 47.619 23.64 23.64 37.21 3.09
333 334 3.345714 CAGCAGACGCGCTAAAATTTAG 58.654 45.455 5.73 8.32 45.49 1.85
334 335 2.095213 CCAGCAGACGCGCTAAAATTTA 59.905 45.455 5.73 0.00 45.49 1.40
335 336 1.135689 CCAGCAGACGCGCTAAAATTT 60.136 47.619 5.73 0.00 45.49 1.82
336 337 0.447801 CCAGCAGACGCGCTAAAATT 59.552 50.000 5.73 0.00 45.49 1.82
337 338 0.391130 TCCAGCAGACGCGCTAAAAT 60.391 50.000 5.73 0.00 45.49 1.82
338 339 1.005512 TCCAGCAGACGCGCTAAAA 60.006 52.632 5.73 0.00 45.49 1.52
339 340 1.446099 CTCCAGCAGACGCGCTAAA 60.446 57.895 5.73 0.00 45.49 1.85
340 341 2.181777 CTCCAGCAGACGCGCTAA 59.818 61.111 5.73 0.00 45.49 3.09
341 342 4.498520 GCTCCAGCAGACGCGCTA 62.499 66.667 5.73 0.00 45.49 4.26
363 364 4.389576 CTTTGCACGTCGGGCAGC 62.390 66.667 23.04 8.20 43.05 5.25
364 365 1.666553 TACTTTGCACGTCGGGCAG 60.667 57.895 23.04 14.64 43.05 4.85
365 366 1.957186 GTACTTTGCACGTCGGGCA 60.957 57.895 20.29 20.29 40.00 5.36
366 367 1.226030 AAGTACTTTGCACGTCGGGC 61.226 55.000 13.87 13.87 0.00 6.13
367 368 1.223187 AAAGTACTTTGCACGTCGGG 58.777 50.000 19.94 0.00 0.00 5.14
368 369 3.328237 AAAAAGTACTTTGCACGTCGG 57.672 42.857 21.22 0.00 32.36 4.79
369 370 3.898361 GCTAAAAAGTACTTTGCACGTCG 59.102 43.478 21.22 7.44 32.36 5.12
370 371 3.898361 CGCTAAAAAGTACTTTGCACGTC 59.102 43.478 21.22 8.19 32.36 4.34
371 372 3.847105 GCGCTAAAAAGTACTTTGCACGT 60.847 43.478 21.22 2.61 32.36 4.49
372 373 2.650297 GCGCTAAAAAGTACTTTGCACG 59.350 45.455 21.22 20.61 32.36 5.34
373 374 2.650297 CGCGCTAAAAAGTACTTTGCAC 59.350 45.455 21.22 13.03 32.36 4.57
374 375 2.911120 CGCGCTAAAAAGTACTTTGCA 58.089 42.857 21.22 11.08 32.36 4.08
375 376 1.642360 GCGCGCTAAAAAGTACTTTGC 59.358 47.619 26.67 18.02 32.36 3.68
376 377 2.239201 GGCGCGCTAAAAAGTACTTTG 58.761 47.619 32.29 10.31 32.36 2.77
377 378 1.136169 CGGCGCGCTAAAAAGTACTTT 60.136 47.619 32.29 15.22 0.00 2.66
378 379 0.441145 CGGCGCGCTAAAAAGTACTT 59.559 50.000 32.29 1.12 0.00 2.24
379 380 2.075761 CGGCGCGCTAAAAAGTACT 58.924 52.632 32.29 0.00 0.00 2.73
380 381 4.637970 CGGCGCGCTAAAAAGTAC 57.362 55.556 32.29 9.74 0.00 2.73
398 399 4.781959 CAACAGCCGGCCAATGCG 62.782 66.667 26.15 6.30 38.85 4.73
399 400 4.440127 CCAACAGCCGGCCAATGC 62.440 66.667 26.15 1.36 0.00 3.56
400 401 2.676121 TCCAACAGCCGGCCAATG 60.676 61.111 26.15 18.39 0.00 2.82
401 402 2.215451 ATCTCCAACAGCCGGCCAAT 62.215 55.000 26.15 5.69 0.00 3.16
402 403 2.905996 ATCTCCAACAGCCGGCCAA 61.906 57.895 26.15 0.88 0.00 4.52
403 404 3.329889 ATCTCCAACAGCCGGCCA 61.330 61.111 26.15 0.00 0.00 5.36
404 405 2.825836 CATCTCCAACAGCCGGCC 60.826 66.667 26.15 5.07 0.00 6.13
405 406 3.512516 GCATCTCCAACAGCCGGC 61.513 66.667 21.89 21.89 0.00 6.13
406 407 1.817099 GAGCATCTCCAACAGCCGG 60.817 63.158 0.00 0.00 0.00 6.13
407 408 3.805267 GAGCATCTCCAACAGCCG 58.195 61.111 0.00 0.00 0.00 5.52
422 423 5.725325 TCAATGGCTCAGATCTATCAGAG 57.275 43.478 7.75 7.75 41.65 3.35
423 424 6.683312 AATCAATGGCTCAGATCTATCAGA 57.317 37.500 0.00 0.00 0.00 3.27
424 425 6.935208 TCAAATCAATGGCTCAGATCTATCAG 59.065 38.462 0.00 0.00 0.00 2.90
425 426 6.834107 TCAAATCAATGGCTCAGATCTATCA 58.166 36.000 0.00 0.00 0.00 2.15
426 427 7.925043 ATCAAATCAATGGCTCAGATCTATC 57.075 36.000 0.00 0.00 0.00 2.08
427 428 9.803507 TTAATCAAATCAATGGCTCAGATCTAT 57.196 29.630 0.00 0.00 0.00 1.98
428 429 9.631257 TTTAATCAAATCAATGGCTCAGATCTA 57.369 29.630 0.00 0.00 0.00 1.98
429 430 8.529424 TTTAATCAAATCAATGGCTCAGATCT 57.471 30.769 0.00 0.00 0.00 2.75
432 433 9.412460 ACTATTTAATCAAATCAATGGCTCAGA 57.588 29.630 0.00 0.00 35.88 3.27
433 434 9.459640 CACTATTTAATCAAATCAATGGCTCAG 57.540 33.333 0.00 0.00 35.88 3.35
434 435 8.415553 CCACTATTTAATCAAATCAATGGCTCA 58.584 33.333 0.00 0.00 35.88 4.26
435 436 8.416329 ACCACTATTTAATCAAATCAATGGCTC 58.584 33.333 0.00 0.00 35.69 4.70
436 437 8.310122 ACCACTATTTAATCAAATCAATGGCT 57.690 30.769 0.00 0.00 35.69 4.75
437 438 8.416329 AGACCACTATTTAATCAAATCAATGGC 58.584 33.333 0.00 0.00 35.69 4.40
438 439 9.740239 CAGACCACTATTTAATCAAATCAATGG 57.260 33.333 0.00 0.00 36.97 3.16
452 453 9.047947 AGGTAAGAGTAAATCAGACCACTATTT 57.952 33.333 0.00 0.00 37.39 1.40
453 454 8.611051 AGGTAAGAGTAAATCAGACCACTATT 57.389 34.615 0.00 0.00 37.39 1.73
454 455 8.611051 AAGGTAAGAGTAAATCAGACCACTAT 57.389 34.615 0.00 0.00 37.39 2.12
455 456 7.894364 AGAAGGTAAGAGTAAATCAGACCACTA 59.106 37.037 0.00 0.00 37.39 2.74
456 457 6.726764 AGAAGGTAAGAGTAAATCAGACCACT 59.273 38.462 0.00 0.00 37.39 4.00
457 458 6.937392 AGAAGGTAAGAGTAAATCAGACCAC 58.063 40.000 0.00 0.00 37.39 4.16
458 459 7.554959 AAGAAGGTAAGAGTAAATCAGACCA 57.445 36.000 0.00 0.00 37.39 4.02
459 460 9.752961 GATAAGAAGGTAAGAGTAAATCAGACC 57.247 37.037 0.00 0.00 35.92 3.85
467 468 9.268282 ACATGGAAGATAAGAAGGTAAGAGTAA 57.732 33.333 0.00 0.00 0.00 2.24
468 469 8.696374 CACATGGAAGATAAGAAGGTAAGAGTA 58.304 37.037 0.00 0.00 0.00 2.59
469 470 7.365117 CCACATGGAAGATAAGAAGGTAAGAGT 60.365 40.741 0.00 0.00 37.39 3.24
470 471 6.989169 CCACATGGAAGATAAGAAGGTAAGAG 59.011 42.308 0.00 0.00 37.39 2.85
471 472 6.672218 TCCACATGGAAGATAAGAAGGTAAGA 59.328 38.462 0.00 0.00 42.18 2.10
472 473 6.889198 TCCACATGGAAGATAAGAAGGTAAG 58.111 40.000 0.00 0.00 42.18 2.34
473 474 6.884472 TCCACATGGAAGATAAGAAGGTAA 57.116 37.500 0.00 0.00 42.18 2.85
487 488 3.849574 TCTTACCCTCATTTCCACATGGA 59.150 43.478 0.00 0.00 43.73 3.41
488 489 4.202441 CTCTTACCCTCATTTCCACATGG 58.798 47.826 0.00 0.00 0.00 3.66
489 490 4.202441 CCTCTTACCCTCATTTCCACATG 58.798 47.826 0.00 0.00 0.00 3.21
490 491 3.203040 CCCTCTTACCCTCATTTCCACAT 59.797 47.826 0.00 0.00 0.00 3.21
491 492 2.576191 CCCTCTTACCCTCATTTCCACA 59.424 50.000 0.00 0.00 0.00 4.17
492 493 2.844348 TCCCTCTTACCCTCATTTCCAC 59.156 50.000 0.00 0.00 0.00 4.02
493 494 3.115390 CTCCCTCTTACCCTCATTTCCA 58.885 50.000 0.00 0.00 0.00 3.53
494 495 2.158740 GCTCCCTCTTACCCTCATTTCC 60.159 54.545 0.00 0.00 0.00 3.13
495 496 2.505819 TGCTCCCTCTTACCCTCATTTC 59.494 50.000 0.00 0.00 0.00 2.17
496 497 2.562296 TGCTCCCTCTTACCCTCATTT 58.438 47.619 0.00 0.00 0.00 2.32
497 498 2.270434 TGCTCCCTCTTACCCTCATT 57.730 50.000 0.00 0.00 0.00 2.57
498 499 2.053244 CATGCTCCCTCTTACCCTCAT 58.947 52.381 0.00 0.00 0.00 2.90
499 500 1.273838 ACATGCTCCCTCTTACCCTCA 60.274 52.381 0.00 0.00 0.00 3.86
500 501 1.501582 ACATGCTCCCTCTTACCCTC 58.498 55.000 0.00 0.00 0.00 4.30
501 502 1.972588 AACATGCTCCCTCTTACCCT 58.027 50.000 0.00 0.00 0.00 4.34
502 503 3.926058 TTAACATGCTCCCTCTTACCC 57.074 47.619 0.00 0.00 0.00 3.69
503 504 6.775594 AATTTTAACATGCTCCCTCTTACC 57.224 37.500 0.00 0.00 0.00 2.85
529 530 1.215673 TGCCCTAGACACACCCAAAAA 59.784 47.619 0.00 0.00 0.00 1.94
530 531 0.847373 TGCCCTAGACACACCCAAAA 59.153 50.000 0.00 0.00 0.00 2.44
531 532 0.109723 GTGCCCTAGACACACCCAAA 59.890 55.000 10.07 0.00 37.96 3.28
532 533 1.057275 TGTGCCCTAGACACACCCAA 61.057 55.000 12.81 0.00 42.88 4.12
533 534 1.460497 TGTGCCCTAGACACACCCA 60.460 57.895 12.81 0.00 42.88 4.51
534 535 3.478780 TGTGCCCTAGACACACCC 58.521 61.111 12.81 0.00 42.88 4.61
538 539 4.250116 CATCTAGATGTGCCCTAGACAC 57.750 50.000 22.42 8.47 43.57 3.67
550 551 8.543862 TGCAATAATTAGAGCACATCTAGATG 57.456 34.615 27.63 27.63 41.57 2.90
560 561 7.986889 TCACTTAGATGTGCAATAATTAGAGCA 59.013 33.333 9.76 9.76 37.81 4.26
561 562 8.370493 TCACTTAGATGTGCAATAATTAGAGC 57.630 34.615 0.00 5.27 37.81 4.09
562 563 9.539825 ACTCACTTAGATGTGCAATAATTAGAG 57.460 33.333 0.00 0.00 37.81 2.43
563 564 9.317936 CACTCACTTAGATGTGCAATAATTAGA 57.682 33.333 0.00 0.00 37.81 2.10
564 565 9.317936 TCACTCACTTAGATGTGCAATAATTAG 57.682 33.333 0.00 0.00 37.81 1.73
565 566 9.665719 TTCACTCACTTAGATGTGCAATAATTA 57.334 29.630 0.00 0.00 37.81 1.40
566 567 8.565896 TTCACTCACTTAGATGTGCAATAATT 57.434 30.769 0.00 0.00 37.81 1.40
567 568 7.201679 GCTTCACTCACTTAGATGTGCAATAAT 60.202 37.037 0.00 0.00 37.81 1.28
568 569 6.092670 GCTTCACTCACTTAGATGTGCAATAA 59.907 38.462 0.00 0.00 37.81 1.40
569 570 5.582269 GCTTCACTCACTTAGATGTGCAATA 59.418 40.000 0.00 0.00 37.81 1.90
570 571 4.394300 GCTTCACTCACTTAGATGTGCAAT 59.606 41.667 0.00 0.00 37.81 3.56
571 572 3.748048 GCTTCACTCACTTAGATGTGCAA 59.252 43.478 0.00 0.00 37.81 4.08
572 573 3.244181 TGCTTCACTCACTTAGATGTGCA 60.244 43.478 0.00 0.00 37.81 4.57
573 574 3.329386 TGCTTCACTCACTTAGATGTGC 58.671 45.455 0.00 0.00 37.81 4.57
574 575 4.142945 GCTTGCTTCACTCACTTAGATGTG 60.143 45.833 0.00 0.00 39.15 3.21
575 576 3.999663 GCTTGCTTCACTCACTTAGATGT 59.000 43.478 0.00 0.00 0.00 3.06
576 577 3.999001 TGCTTGCTTCACTCACTTAGATG 59.001 43.478 0.00 0.00 0.00 2.90
577 578 4.277515 TGCTTGCTTCACTCACTTAGAT 57.722 40.909 0.00 0.00 0.00 1.98
578 579 3.751479 TGCTTGCTTCACTCACTTAGA 57.249 42.857 0.00 0.00 0.00 2.10
579 580 6.148480 ACTTTATGCTTGCTTCACTCACTTAG 59.852 38.462 0.00 0.00 0.00 2.18
580 581 5.997746 ACTTTATGCTTGCTTCACTCACTTA 59.002 36.000 0.00 0.00 0.00 2.24
581 582 4.823989 ACTTTATGCTTGCTTCACTCACTT 59.176 37.500 0.00 0.00 0.00 3.16
582 583 4.392940 ACTTTATGCTTGCTTCACTCACT 58.607 39.130 0.00 0.00 0.00 3.41
583 584 4.756084 ACTTTATGCTTGCTTCACTCAC 57.244 40.909 0.00 0.00 0.00 3.51
584 585 6.875948 TTTACTTTATGCTTGCTTCACTCA 57.124 33.333 0.00 0.00 0.00 3.41
611 612 9.664332 GCATATCTAAGTCCTATGTCATTGATT 57.336 33.333 0.00 0.00 0.00 2.57
612 613 8.819845 TGCATATCTAAGTCCTATGTCATTGAT 58.180 33.333 0.00 0.00 0.00 2.57
613 614 8.193953 TGCATATCTAAGTCCTATGTCATTGA 57.806 34.615 0.00 0.00 0.00 2.57
614 615 8.837788 TTGCATATCTAAGTCCTATGTCATTG 57.162 34.615 0.00 0.00 0.00 2.82
623 624 9.401058 GCCATAAATATTGCATATCTAAGTCCT 57.599 33.333 0.00 0.00 0.00 3.85
624 625 9.177608 TGCCATAAATATTGCATATCTAAGTCC 57.822 33.333 0.00 0.00 30.49 3.85
625 626 9.994432 GTGCCATAAATATTGCATATCTAAGTC 57.006 33.333 2.94 0.00 36.83 3.01
626 627 9.519191 TGTGCCATAAATATTGCATATCTAAGT 57.481 29.630 2.94 0.00 36.83 2.24
632 633 9.910267 TCTAGATGTGCCATAAATATTGCATAT 57.090 29.630 7.98 7.98 38.33 1.78
633 634 9.910267 ATCTAGATGTGCCATAAATATTGCATA 57.090 29.630 3.89 1.31 36.83 3.14
634 635 8.683615 CATCTAGATGTGCCATAAATATTGCAT 58.316 33.333 22.42 0.00 36.83 3.96
635 636 8.047413 CATCTAGATGTGCCATAAATATTGCA 57.953 34.615 22.42 0.00 32.69 4.08
844 845 4.116238 GGGTTCTCATCTGTCTCGAATTC 58.884 47.826 0.00 0.00 0.00 2.17
886 887 0.397254 TGGCAGAGTAGGTAGGAGCC 60.397 60.000 0.00 0.00 40.93 4.70
909 912 2.551938 GGAGGTAGGTAGGTAGGTAGCG 60.552 59.091 0.00 0.00 0.00 4.26
939 942 3.738982 TGGATGGATGTTTATACCGCTG 58.261 45.455 0.00 0.00 0.00 5.18
950 955 1.139654 CTGGTGTCGATGGATGGATGT 59.860 52.381 0.00 0.00 0.00 3.06
1252 1297 2.066999 GGTTGGTGTTGGGGGCAAA 61.067 57.895 0.00 0.00 0.00 3.68
1320 1368 4.338539 ACGTCGGTGTCGCACTCC 62.339 66.667 9.31 3.72 34.40 3.85
1325 1373 3.749373 CGTTGACGTCGGTGTCGC 61.749 66.667 11.62 0.00 41.87 5.19
1613 1664 2.628178 CAATAGATGTCGTAGAGGCCCA 59.372 50.000 0.00 0.00 36.95 5.36
1663 1714 1.004277 CTGCTGGTCACGAACTCGAC 61.004 60.000 6.05 0.00 43.02 4.20
1693 1744 3.827898 GAGCTGGTCGTCGGGGAG 61.828 72.222 0.00 0.00 0.00 4.30
1802 1861 0.248825 GAGCATCGACGAGCATCTGT 60.249 55.000 17.47 1.46 0.00 3.41
2383 6028 4.575885 TGTCATCTAAAGGACTTTTCCCG 58.424 43.478 2.27 0.00 44.10 5.14
2385 6030 5.415701 TGCATGTCATCTAAAGGACTTTTCC 59.584 40.000 2.27 0.00 43.22 3.13
2428 6078 5.674525 TGGTAGATGTCTTGGATAAAGCTG 58.325 41.667 0.00 0.00 35.69 4.24
2453 6103 9.283420 CATGATACTCTTAGTATGATACTTGCG 57.717 37.037 10.78 2.65 41.21 4.85
2466 6116 2.224042 TGCCCGTGCATGATACTCTTAG 60.224 50.000 7.72 0.00 44.23 2.18
2467 6117 1.760029 TGCCCGTGCATGATACTCTTA 59.240 47.619 7.72 0.00 44.23 2.10
2468 6118 0.541392 TGCCCGTGCATGATACTCTT 59.459 50.000 7.72 0.00 44.23 2.85
2502 6152 5.414454 ACATCGTTAATTGCAGTACCACATT 59.586 36.000 0.00 0.00 0.00 2.71
2592 6242 1.600957 GTGATGGCAAGATGACCGATG 59.399 52.381 0.00 0.00 0.00 3.84
2624 6274 1.674359 ATGTGCTTCACGTTTGACCA 58.326 45.000 0.00 0.00 37.14 4.02
2906 6556 2.657459 AGAGAGAGGAGAGGGGAAAGAA 59.343 50.000 0.00 0.00 0.00 2.52
2907 6557 2.024464 CAGAGAGAGGAGAGGGGAAAGA 60.024 54.545 0.00 0.00 0.00 2.52
2968 6618 6.482973 GGCCTTCAAATCTTGACAAATTTTGA 59.517 34.615 15.81 15.85 39.87 2.69
3130 6784 9.806203 TGACCTCAAATTGCATATAAATCAAAG 57.194 29.630 0.00 0.00 0.00 2.77
3205 6859 4.142403 ACGATGGTTACGACGGAGATTTAA 60.142 41.667 0.00 0.00 34.70 1.52
3333 6987 8.268850 ACGTACGGGTAAGATAATTATACGAT 57.731 34.615 21.06 0.00 37.07 3.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.