Multiple sequence alignment - TraesCS5A01G244000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G244000 chr5A 100.000 2885 0 0 1 2885 458212540 458215424 0.000000e+00 5328.0
1 TraesCS5A01G244000 chr5A 95.462 617 14 5 114 719 455999883 455999270 0.000000e+00 972.0
2 TraesCS5A01G244000 chr5A 81.169 154 14 9 2736 2885 618369449 618369591 3.040000e-20 110.0
3 TraesCS5A01G244000 chr5D 95.285 1209 43 8 1337 2539 356901284 356902484 0.000000e+00 1905.0
4 TraesCS5A01G244000 chr5D 92.627 1275 36 16 24 1249 356899981 356901246 0.000000e+00 1781.0
5 TraesCS5A01G244000 chr5B 93.764 914 37 10 19 926 421667457 421668356 0.000000e+00 1354.0
6 TraesCS5A01G244000 chr5B 93.079 708 29 8 1337 2024 421668691 421669398 0.000000e+00 1018.0
7 TraesCS5A01G244000 chr5B 90.291 309 9 5 955 1249 421668356 421668657 4.510000e-103 385.0
8 TraesCS5A01G244000 chr5B 88.163 245 18 2 2044 2288 421669736 421669969 6.090000e-72 281.0
9 TraesCS5A01G244000 chr5B 79.193 322 50 13 2302 2613 421670034 421670348 1.050000e-49 207.0
10 TraesCS5A01G244000 chr3D 86.885 305 37 2 1582 1886 277066713 277067014 3.560000e-89 339.0
11 TraesCS5A01G244000 chr3D 97.590 83 2 0 1356 1438 277066532 277066614 3.000000e-30 143.0
12 TraesCS5A01G244000 chr3A 86.408 309 37 4 1588 1895 362591279 362590975 1.660000e-87 333.0
13 TraesCS5A01G244000 chr3A 95.506 89 2 1 1356 1442 362591466 362591378 1.080000e-29 141.0
14 TraesCS5A01G244000 chr3B 86.084 309 37 5 1588 1895 373285471 373285168 7.710000e-86 327.0
15 TraesCS5A01G244000 chr3B 95.506 89 4 0 1356 1444 373285658 373285570 3.000000e-30 143.0
16 TraesCS5A01G244000 chr2B 85.621 306 41 2 1581 1886 432133603 432133301 4.640000e-83 318.0
17 TraesCS5A01G244000 chr2D 84.967 306 43 2 1581 1886 363974676 363974374 1.000000e-79 307.0
18 TraesCS5A01G244000 chr2A 84.967 306 43 2 1581 1886 489960501 489960199 1.000000e-79 307.0
19 TraesCS5A01G244000 chr2A 75.945 291 39 23 2616 2885 38810360 38810080 1.400000e-23 121.0
20 TraesCS5A01G244000 chr4A 84.211 152 14 7 2738 2885 137190738 137190883 3.880000e-29 139.0
21 TraesCS5A01G244000 chr4A 82.353 153 12 9 2737 2885 586854992 586854851 5.050000e-23 119.0
22 TraesCS5A01G244000 chr4A 81.935 155 12 8 2735 2885 586922875 586923017 1.820000e-22 117.0
23 TraesCS5A01G244000 chr7A 81.699 153 14 6 2736 2885 577767437 577767296 6.530000e-22 115.0
24 TraesCS5A01G244000 chr7A 78.417 139 23 5 2748 2885 509425607 509425739 1.840000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G244000 chr5A 458212540 458215424 2884 False 5328 5328 100.000 1 2885 1 chr5A.!!$F1 2884
1 TraesCS5A01G244000 chr5A 455999270 455999883 613 True 972 972 95.462 114 719 1 chr5A.!!$R1 605
2 TraesCS5A01G244000 chr5D 356899981 356902484 2503 False 1843 1905 93.956 24 2539 2 chr5D.!!$F1 2515
3 TraesCS5A01G244000 chr5B 421667457 421670348 2891 False 649 1354 88.898 19 2613 5 chr5B.!!$F1 2594

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
934 981 1.067142 TGTACTTGGCCTTCGCAGTAG 60.067 52.381 3.32 0.0 36.38 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2636 3137 0.241213 CGATGTCGGGAGCGTATGAT 59.759 55.0 0.0 0.0 35.37 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 3.849563 AAACCTACACACTTGGCTGTA 57.150 42.857 0.00 0.00 0.00 2.74
91 92 3.561725 GGCTGTACTCCAGTTATCAATGC 59.438 47.826 0.00 0.00 43.55 3.56
99 100 9.712305 GTACTCCAGTTATCAATGCTATATGTT 57.288 33.333 0.00 0.00 0.00 2.71
318 332 7.509546 AGTGTAATATAAAGTGGGACAGATGG 58.490 38.462 0.00 0.00 41.80 3.51
319 333 6.710744 GTGTAATATAAAGTGGGACAGATGGG 59.289 42.308 0.00 0.00 41.80 4.00
353 367 7.011828 TGTAAAGTGTAAACTGAAAGCAGAC 57.988 36.000 0.00 0.00 45.17 3.51
476 493 4.026475 GCGCATCAGTCAAGAACATACTAC 60.026 45.833 0.30 0.00 0.00 2.73
477 494 5.344066 CGCATCAGTCAAGAACATACTACT 58.656 41.667 0.00 0.00 0.00 2.57
478 495 6.495706 CGCATCAGTCAAGAACATACTACTA 58.504 40.000 0.00 0.00 0.00 1.82
541 558 6.473455 GTGCATAATTTTGGCAAGTAGATCAC 59.527 38.462 0.00 1.87 39.57 3.06
586 603 4.489306 AGGTATGTAGCCCTTTCAGAAC 57.511 45.455 0.00 0.00 0.00 3.01
774 799 2.418609 GCTTTCTTGCCCAACACACTTT 60.419 45.455 0.00 0.00 0.00 2.66
788 813 7.308951 CCCAACACACTTTATTTAGTCCGAAAT 60.309 37.037 0.00 0.00 33.60 2.17
812 837 3.119101 TCTGAGGTTTAATCACTCTCGCC 60.119 47.826 0.00 0.00 32.58 5.54
934 981 1.067142 TGTACTTGGCCTTCGCAGTAG 60.067 52.381 3.32 0.00 36.38 2.57
1029 1076 0.333652 TGGATCACCTGTCCCGTCTA 59.666 55.000 0.00 0.00 34.76 2.59
1159 1207 1.204704 TGTTCATCGATCGGAAGCAGT 59.795 47.619 16.41 0.00 0.00 4.40
1240 1312 5.346822 GTCATTTTGTTAATTGAGCTGCCAG 59.653 40.000 0.00 0.00 0.00 4.85
1241 1313 5.243507 TCATTTTGTTAATTGAGCTGCCAGA 59.756 36.000 0.00 0.00 0.00 3.86
1242 1314 5.528043 TTTTGTTAATTGAGCTGCCAGAA 57.472 34.783 0.00 0.00 0.00 3.02
1243 1315 5.528043 TTTGTTAATTGAGCTGCCAGAAA 57.472 34.783 0.00 0.00 0.00 2.52
1244 1316 4.503741 TGTTAATTGAGCTGCCAGAAAC 57.496 40.909 0.00 1.76 0.00 2.78
1245 1317 3.058293 TGTTAATTGAGCTGCCAGAAACG 60.058 43.478 0.00 0.00 0.00 3.60
1246 1318 1.609208 AATTGAGCTGCCAGAAACGT 58.391 45.000 0.00 0.00 0.00 3.99
1247 1319 0.877071 ATTGAGCTGCCAGAAACGTG 59.123 50.000 0.00 0.00 0.00 4.49
1248 1320 0.463654 TTGAGCTGCCAGAAACGTGT 60.464 50.000 0.00 0.00 0.00 4.49
1249 1321 0.463654 TGAGCTGCCAGAAACGTGTT 60.464 50.000 0.00 0.00 0.00 3.32
1250 1322 0.663153 GAGCTGCCAGAAACGTGTTT 59.337 50.000 0.00 0.00 35.14 2.83
1251 1323 1.065551 GAGCTGCCAGAAACGTGTTTT 59.934 47.619 0.00 0.00 32.11 2.43
1252 1324 1.476488 AGCTGCCAGAAACGTGTTTTT 59.524 42.857 0.00 0.00 32.11 1.94
1281 1353 2.829592 GGAGGTTATCCCCCAGCG 59.170 66.667 0.00 0.00 43.01 5.18
1282 1354 2.070650 GGAGGTTATCCCCCAGCGT 61.071 63.158 0.00 0.00 43.01 5.07
1283 1355 1.446366 GAGGTTATCCCCCAGCGTC 59.554 63.158 0.00 0.00 0.00 5.19
1284 1356 1.003051 AGGTTATCCCCCAGCGTCT 59.997 57.895 0.00 0.00 0.00 4.18
1285 1357 0.620700 AGGTTATCCCCCAGCGTCTT 60.621 55.000 0.00 0.00 0.00 3.01
1286 1358 0.179054 GGTTATCCCCCAGCGTCTTC 60.179 60.000 0.00 0.00 0.00 2.87
1287 1359 0.539986 GTTATCCCCCAGCGTCTTCA 59.460 55.000 0.00 0.00 0.00 3.02
1288 1360 1.141053 GTTATCCCCCAGCGTCTTCAT 59.859 52.381 0.00 0.00 0.00 2.57
1289 1361 1.048601 TATCCCCCAGCGTCTTCATC 58.951 55.000 0.00 0.00 0.00 2.92
1290 1362 0.982852 ATCCCCCAGCGTCTTCATCA 60.983 55.000 0.00 0.00 0.00 3.07
1291 1363 0.982852 TCCCCCAGCGTCTTCATCAT 60.983 55.000 0.00 0.00 0.00 2.45
1292 1364 0.533755 CCCCCAGCGTCTTCATCATC 60.534 60.000 0.00 0.00 0.00 2.92
1293 1365 0.178767 CCCCAGCGTCTTCATCATCA 59.821 55.000 0.00 0.00 0.00 3.07
1294 1366 1.579698 CCCAGCGTCTTCATCATCAG 58.420 55.000 0.00 0.00 0.00 2.90
1295 1367 1.137675 CCCAGCGTCTTCATCATCAGA 59.862 52.381 0.00 0.00 0.00 3.27
1296 1368 2.419159 CCCAGCGTCTTCATCATCAGAA 60.419 50.000 0.00 0.00 0.00 3.02
1297 1369 2.864946 CCAGCGTCTTCATCATCAGAAG 59.135 50.000 0.00 0.00 42.94 2.85
1298 1370 2.864946 CAGCGTCTTCATCATCAGAAGG 59.135 50.000 0.00 0.00 42.09 3.46
1299 1371 2.762887 AGCGTCTTCATCATCAGAAGGA 59.237 45.455 0.00 0.00 42.09 3.36
1300 1372 3.387374 AGCGTCTTCATCATCAGAAGGAT 59.613 43.478 0.00 0.00 42.09 3.24
1309 1381 1.001268 CATCAGAAGGATGCATGCTGC 60.001 52.381 22.38 20.25 46.35 5.25
1310 1382 0.750546 TCAGAAGGATGCATGCTGCC 60.751 55.000 22.38 19.04 44.23 4.85
1311 1383 1.035385 CAGAAGGATGCATGCTGCCA 61.035 55.000 22.38 5.14 44.23 4.92
1312 1384 0.752009 AGAAGGATGCATGCTGCCAG 60.752 55.000 22.38 0.00 44.23 4.85
1336 1408 6.317893 AGAAACGTGTGATTAACTGGAGTTTT 59.682 34.615 0.00 0.00 39.31 2.43
1337 1409 5.668558 ACGTGTGATTAACTGGAGTTTTC 57.331 39.130 0.00 0.00 39.31 2.29
1413 1508 0.967887 TGCGAGAGGAGGGTCAAGAG 60.968 60.000 0.00 0.00 0.00 2.85
1449 1544 6.094464 TCGATTCGGGGTACATATACACATAG 59.906 42.308 6.18 0.00 36.31 2.23
1455 1550 5.778750 GGGGTACATATACACATAGTGACCT 59.221 44.000 3.88 0.00 36.31 3.85
1481 1576 3.872182 TCGATCTCAAACGTCAAACCAAA 59.128 39.130 0.00 0.00 0.00 3.28
1505 1600 9.937175 AAACGATCTAACTCTTTTCTTTTGAAG 57.063 29.630 0.00 0.00 39.88 3.02
1599 1695 2.904866 GCCAAAGGTGTGACGGCA 60.905 61.111 0.00 0.00 42.50 5.69
1632 1728 1.943046 CGCAAGATCAGCAAGGTGACT 60.943 52.381 3.85 1.95 42.84 3.41
1888 1984 1.131126 CTTGCACCGTCATGTGATTCC 59.869 52.381 0.00 0.00 38.55 3.01
1990 2105 5.022787 TGGGGAAAAATGATACCAAGAAGG 58.977 41.667 0.00 0.00 45.67 3.46
2026 2143 6.911250 TGTACGGTACTGATGGATGATATT 57.089 37.500 18.32 0.00 0.00 1.28
2027 2144 6.920817 TGTACGGTACTGATGGATGATATTC 58.079 40.000 18.32 0.00 0.00 1.75
2028 2145 6.492087 TGTACGGTACTGATGGATGATATTCA 59.508 38.462 18.32 0.00 0.00 2.57
2029 2146 6.611613 ACGGTACTGATGGATGATATTCAT 57.388 37.500 9.17 0.00 40.34 2.57
2030 2147 7.718334 ACGGTACTGATGGATGATATTCATA 57.282 36.000 9.17 0.00 37.20 2.15
2031 2148 8.311395 ACGGTACTGATGGATGATATTCATAT 57.689 34.615 9.17 0.00 37.20 1.78
2063 2503 1.717194 TTATCGTTCACGTCCAAGGC 58.283 50.000 0.00 0.00 40.80 4.35
2094 2534 3.181510 GCCCGAGTTACAACTTTATGCTG 60.182 47.826 0.00 0.00 39.88 4.41
2165 2605 4.871822 TCTTCTGTCCTACCTGATCATCA 58.128 43.478 0.00 0.00 0.00 3.07
2174 2614 8.717717 TGTCCTACCTGATCATCATTATCTTTT 58.282 33.333 0.00 0.00 0.00 2.27
2219 2659 4.460034 GGGGAAAGCATGCAAAATTGAATT 59.540 37.500 21.98 0.00 0.00 2.17
2315 2806 3.216147 ACACGCAAAACATATGCCTTC 57.784 42.857 1.58 0.00 40.72 3.46
2351 2842 9.343539 GGTGAATCTAAGCTTATAAAGTGGAAT 57.656 33.333 6.64 0.00 0.00 3.01
2506 3002 1.555967 TGCAAAGGCCAGGGATAAAC 58.444 50.000 5.01 0.00 40.13 2.01
2524 3023 7.378966 GGATAAACCCTTCTTTCTTTCCAAAG 58.621 38.462 0.00 0.00 37.36 2.77
2539 3038 9.807921 TTCTTTCCAAAGTTACCTATTCTGAAT 57.192 29.630 8.14 8.14 37.31 2.57
2587 3088 3.568093 AAAAAGCCATGTGTGTCGC 57.432 47.368 0.00 0.00 0.00 5.19
2602 3103 0.109597 GTCGCCTGATGCAAAGGTTG 60.110 55.000 17.55 11.81 41.33 3.77
2633 3134 5.098218 CCAAAAATTGACTTTGGCACATG 57.902 39.130 7.10 0.00 44.64 3.21
2634 3135 4.023878 CCAAAAATTGACTTTGGCACATGG 60.024 41.667 7.10 0.00 44.64 3.66
2635 3136 3.405823 AAATTGACTTTGGCACATGGG 57.594 42.857 0.00 0.00 39.30 4.00
2636 3137 2.307496 ATTGACTTTGGCACATGGGA 57.693 45.000 0.00 0.00 39.30 4.37
2637 3138 2.307496 TTGACTTTGGCACATGGGAT 57.693 45.000 0.00 0.00 39.30 3.85
2638 3139 1.838112 TGACTTTGGCACATGGGATC 58.162 50.000 0.00 0.00 39.30 3.36
2639 3140 1.075212 TGACTTTGGCACATGGGATCA 59.925 47.619 0.00 0.00 39.30 2.92
2640 3141 2.291735 TGACTTTGGCACATGGGATCAT 60.292 45.455 0.00 0.00 39.30 2.45
2641 3142 3.053768 TGACTTTGGCACATGGGATCATA 60.054 43.478 0.00 0.00 39.30 2.15
2642 3143 3.290710 ACTTTGGCACATGGGATCATAC 58.709 45.455 0.00 0.00 39.30 2.39
2643 3144 1.965935 TTGGCACATGGGATCATACG 58.034 50.000 0.00 0.00 39.30 3.06
2644 3145 0.534877 TGGCACATGGGATCATACGC 60.535 55.000 0.00 0.00 31.33 4.42
2645 3146 0.250467 GGCACATGGGATCATACGCT 60.250 55.000 0.00 0.00 33.07 5.07
2646 3147 1.151668 GCACATGGGATCATACGCTC 58.848 55.000 0.00 0.00 31.10 5.03
2647 3148 1.800805 CACATGGGATCATACGCTCC 58.199 55.000 0.00 0.00 31.33 4.70
2650 3151 3.773370 GGGATCATACGCTCCCGA 58.227 61.111 0.00 0.00 41.74 5.14
2651 3152 1.289380 GGGATCATACGCTCCCGAC 59.711 63.158 0.00 0.00 41.74 4.79
2652 3153 1.461091 GGGATCATACGCTCCCGACA 61.461 60.000 0.00 0.00 41.74 4.35
2653 3154 0.603569 GGATCATACGCTCCCGACAT 59.396 55.000 0.00 0.00 38.29 3.06
2654 3155 1.402984 GGATCATACGCTCCCGACATC 60.403 57.143 0.00 0.00 38.29 3.06
2655 3156 0.241213 ATCATACGCTCCCGACATCG 59.759 55.000 0.00 0.00 38.29 3.84
2670 3171 5.524511 CGACATCGGAAAATAACACTTCA 57.475 39.130 0.00 0.00 35.37 3.02
2671 3172 5.922546 CGACATCGGAAAATAACACTTCAA 58.077 37.500 0.00 0.00 35.37 2.69
2672 3173 6.367421 CGACATCGGAAAATAACACTTCAAA 58.633 36.000 0.00 0.00 35.37 2.69
2673 3174 6.853872 CGACATCGGAAAATAACACTTCAAAA 59.146 34.615 0.00 0.00 35.37 2.44
2674 3175 7.537306 CGACATCGGAAAATAACACTTCAAAAT 59.463 33.333 0.00 0.00 35.37 1.82
2675 3176 8.519492 ACATCGGAAAATAACACTTCAAAATG 57.481 30.769 0.00 0.00 0.00 2.32
2676 3177 8.141268 ACATCGGAAAATAACACTTCAAAATGT 58.859 29.630 0.00 0.00 0.00 2.71
2677 3178 8.638565 CATCGGAAAATAACACTTCAAAATGTC 58.361 33.333 0.00 0.00 0.00 3.06
2678 3179 7.708051 TCGGAAAATAACACTTCAAAATGTCA 58.292 30.769 0.00 0.00 0.00 3.58
2679 3180 8.191446 TCGGAAAATAACACTTCAAAATGTCAA 58.809 29.630 0.00 0.00 0.00 3.18
2680 3181 8.812329 CGGAAAATAACACTTCAAAATGTCAAA 58.188 29.630 0.00 0.00 0.00 2.69
2783 3284 8.976986 ATTACAAAAGATGTCTCATGAAAAGC 57.023 30.769 0.00 0.00 42.70 3.51
2784 3285 5.776744 ACAAAAGATGTCTCATGAAAAGCC 58.223 37.500 0.00 0.00 37.96 4.35
2785 3286 5.166398 CAAAAGATGTCTCATGAAAAGCCC 58.834 41.667 0.00 0.00 0.00 5.19
2786 3287 4.313020 AAGATGTCTCATGAAAAGCCCT 57.687 40.909 0.00 0.00 0.00 5.19
2787 3288 4.313020 AGATGTCTCATGAAAAGCCCTT 57.687 40.909 0.00 0.00 0.00 3.95
2788 3289 4.670765 AGATGTCTCATGAAAAGCCCTTT 58.329 39.130 0.00 0.00 0.00 3.11
2789 3290 5.082425 AGATGTCTCATGAAAAGCCCTTTT 58.918 37.500 5.75 5.75 44.59 2.27
2790 3291 5.541484 AGATGTCTCATGAAAAGCCCTTTTT 59.459 36.000 7.37 0.00 42.26 1.94
2791 3292 6.721208 AGATGTCTCATGAAAAGCCCTTTTTA 59.279 34.615 7.37 4.25 42.26 1.52
2792 3293 6.723298 TGTCTCATGAAAAGCCCTTTTTAA 57.277 33.333 7.37 1.07 42.26 1.52
2793 3294 6.512297 TGTCTCATGAAAAGCCCTTTTTAAC 58.488 36.000 7.37 0.76 42.26 2.01
2794 3295 6.097554 TGTCTCATGAAAAGCCCTTTTTAACA 59.902 34.615 7.37 2.52 42.26 2.41
2795 3296 6.420903 GTCTCATGAAAAGCCCTTTTTAACAC 59.579 38.462 7.37 0.00 42.26 3.32
2796 3297 6.323739 TCTCATGAAAAGCCCTTTTTAACACT 59.676 34.615 7.37 0.00 42.26 3.55
2797 3298 6.279882 TCATGAAAAGCCCTTTTTAACACTG 58.720 36.000 7.37 0.47 42.26 3.66
2798 3299 5.923733 TGAAAAGCCCTTTTTAACACTGA 57.076 34.783 7.37 0.00 42.26 3.41
2799 3300 6.287589 TGAAAAGCCCTTTTTAACACTGAA 57.712 33.333 7.37 0.00 42.26 3.02
2800 3301 6.883744 TGAAAAGCCCTTTTTAACACTGAAT 58.116 32.000 7.37 0.00 42.26 2.57
2801 3302 7.334858 TGAAAAGCCCTTTTTAACACTGAATT 58.665 30.769 7.37 0.00 42.26 2.17
2802 3303 7.826744 TGAAAAGCCCTTTTTAACACTGAATTT 59.173 29.630 7.37 0.00 42.26 1.82
2803 3304 8.574251 AAAAGCCCTTTTTAACACTGAATTTT 57.426 26.923 0.34 0.00 39.52 1.82
2804 3305 7.552458 AAGCCCTTTTTAACACTGAATTTTG 57.448 32.000 0.00 0.00 0.00 2.44
2805 3306 6.649155 AGCCCTTTTTAACACTGAATTTTGT 58.351 32.000 0.00 0.00 0.00 2.83
2806 3307 6.761242 AGCCCTTTTTAACACTGAATTTTGTC 59.239 34.615 0.00 0.00 0.00 3.18
2807 3308 6.761242 GCCCTTTTTAACACTGAATTTTGTCT 59.239 34.615 0.00 0.00 0.00 3.41
2808 3309 7.279981 GCCCTTTTTAACACTGAATTTTGTCTT 59.720 33.333 0.00 0.00 0.00 3.01
2809 3310 8.817100 CCCTTTTTAACACTGAATTTTGTCTTC 58.183 33.333 0.00 0.00 0.00 2.87
2810 3311 9.586435 CCTTTTTAACACTGAATTTTGTCTTCT 57.414 29.630 0.00 0.00 0.00 2.85
2815 3316 7.630242 AACACTGAATTTTGTCTTCTTCTCA 57.370 32.000 0.00 0.00 0.00 3.27
2816 3317 7.020914 ACACTGAATTTTGTCTTCTTCTCAC 57.979 36.000 0.00 0.00 0.00 3.51
2817 3318 6.038714 ACACTGAATTTTGTCTTCTTCTCACC 59.961 38.462 0.00 0.00 0.00 4.02
2818 3319 5.237344 ACTGAATTTTGTCTTCTTCTCACCG 59.763 40.000 0.00 0.00 0.00 4.94
2819 3320 4.024048 TGAATTTTGTCTTCTTCTCACCGC 60.024 41.667 0.00 0.00 0.00 5.68
2820 3321 2.910688 TTTGTCTTCTTCTCACCGCT 57.089 45.000 0.00 0.00 0.00 5.52
2821 3322 4.330944 TTTTGTCTTCTTCTCACCGCTA 57.669 40.909 0.00 0.00 0.00 4.26
2822 3323 3.299340 TTGTCTTCTTCTCACCGCTAC 57.701 47.619 0.00 0.00 0.00 3.58
2823 3324 2.235891 TGTCTTCTTCTCACCGCTACA 58.764 47.619 0.00 0.00 0.00 2.74
2824 3325 2.030185 TGTCTTCTTCTCACCGCTACAC 60.030 50.000 0.00 0.00 0.00 2.90
2825 3326 2.030185 GTCTTCTTCTCACCGCTACACA 60.030 50.000 0.00 0.00 0.00 3.72
2826 3327 2.626266 TCTTCTTCTCACCGCTACACAA 59.374 45.455 0.00 0.00 0.00 3.33
2827 3328 3.069016 TCTTCTTCTCACCGCTACACAAA 59.931 43.478 0.00 0.00 0.00 2.83
2828 3329 3.462483 TCTTCTCACCGCTACACAAAA 57.538 42.857 0.00 0.00 0.00 2.44
2829 3330 3.390135 TCTTCTCACCGCTACACAAAAG 58.610 45.455 0.00 0.00 0.00 2.27
2830 3331 2.902705 TCTCACCGCTACACAAAAGT 57.097 45.000 0.00 0.00 0.00 2.66
2831 3332 3.188159 TCTCACCGCTACACAAAAGTT 57.812 42.857 0.00 0.00 0.00 2.66
2832 3333 2.869801 TCTCACCGCTACACAAAAGTTG 59.130 45.455 0.00 0.00 0.00 3.16
2833 3334 2.612212 CTCACCGCTACACAAAAGTTGT 59.388 45.455 0.00 0.00 46.75 3.32
2834 3335 2.610374 TCACCGCTACACAAAAGTTGTC 59.390 45.455 0.00 0.00 43.23 3.18
2835 3336 1.595794 ACCGCTACACAAAAGTTGTCG 59.404 47.619 0.00 0.00 43.23 4.35
2836 3337 1.595794 CCGCTACACAAAAGTTGTCGT 59.404 47.619 0.00 0.00 43.23 4.34
2837 3338 2.031191 CCGCTACACAAAAGTTGTCGTT 59.969 45.455 0.00 0.00 43.23 3.85
2838 3339 3.486209 CCGCTACACAAAAGTTGTCGTTT 60.486 43.478 0.00 0.00 43.23 3.60
2839 3340 4.260294 CCGCTACACAAAAGTTGTCGTTTA 60.260 41.667 0.00 0.00 43.23 2.01
2840 3341 5.437263 CGCTACACAAAAGTTGTCGTTTAT 58.563 37.500 0.00 0.00 43.23 1.40
2841 3342 5.905181 CGCTACACAAAAGTTGTCGTTTATT 59.095 36.000 0.00 0.00 43.23 1.40
2842 3343 6.412653 CGCTACACAAAAGTTGTCGTTTATTT 59.587 34.615 0.00 0.00 43.23 1.40
2843 3344 7.044576 CGCTACACAAAAGTTGTCGTTTATTTT 60.045 33.333 0.00 0.00 43.23 1.82
2844 3345 8.588789 GCTACACAAAAGTTGTCGTTTATTTTT 58.411 29.630 0.00 0.00 43.23 1.94
2865 3366 3.878086 TCGTGAAATGACTTTGTGAGC 57.122 42.857 0.00 0.00 0.00 4.26
2866 3367 3.202097 TCGTGAAATGACTTTGTGAGCA 58.798 40.909 0.00 0.00 0.00 4.26
2867 3368 3.002246 TCGTGAAATGACTTTGTGAGCAC 59.998 43.478 0.00 0.00 0.00 4.40
2868 3369 3.291585 GTGAAATGACTTTGTGAGCACG 58.708 45.455 0.00 0.00 0.00 5.34
2869 3370 2.942376 TGAAATGACTTTGTGAGCACGT 59.058 40.909 0.00 0.00 0.00 4.49
2870 3371 4.025229 GTGAAATGACTTTGTGAGCACGTA 60.025 41.667 0.00 0.00 0.00 3.57
2871 3372 4.211164 TGAAATGACTTTGTGAGCACGTAG 59.789 41.667 0.00 0.00 0.00 3.51
2872 3373 3.660501 ATGACTTTGTGAGCACGTAGA 57.339 42.857 8.25 0.00 0.00 2.59
2873 3374 3.446310 TGACTTTGTGAGCACGTAGAA 57.554 42.857 8.25 0.00 0.00 2.10
2874 3375 3.990092 TGACTTTGTGAGCACGTAGAAT 58.010 40.909 8.25 0.00 0.00 2.40
2875 3376 3.740832 TGACTTTGTGAGCACGTAGAATG 59.259 43.478 8.25 0.00 0.00 2.67
2876 3377 3.728845 ACTTTGTGAGCACGTAGAATGT 58.271 40.909 8.25 0.00 0.00 2.71
2877 3378 3.741344 ACTTTGTGAGCACGTAGAATGTC 59.259 43.478 8.25 0.00 0.00 3.06
2878 3379 1.977188 TGTGAGCACGTAGAATGTCG 58.023 50.000 0.00 0.00 0.00 4.35
2879 3380 1.538075 TGTGAGCACGTAGAATGTCGA 59.462 47.619 0.00 0.00 0.00 4.20
2880 3381 2.177977 GTGAGCACGTAGAATGTCGAG 58.822 52.381 0.00 0.00 0.00 4.04
2881 3382 2.081462 TGAGCACGTAGAATGTCGAGA 58.919 47.619 0.00 0.00 0.00 4.04
2882 3383 2.683362 TGAGCACGTAGAATGTCGAGAT 59.317 45.455 0.00 0.00 0.00 2.75
2883 3384 3.039405 GAGCACGTAGAATGTCGAGATG 58.961 50.000 0.00 0.00 0.00 2.90
2884 3385 2.423892 AGCACGTAGAATGTCGAGATGT 59.576 45.455 0.00 0.00 0.00 3.06
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 9.935241 CTAACATATAGCATTGATAACTGGAGT 57.065 33.333 0.00 0.00 0.00 3.85
91 92 8.354711 TGAAGCATCCTAGGACTAACATATAG 57.645 38.462 15.42 0.00 0.00 1.31
99 100 7.676683 AAACTAATGAAGCATCCTAGGACTA 57.323 36.000 15.42 0.00 0.00 2.59
353 367 0.318441 TGCAAGGTTCTCCACTCTCG 59.682 55.000 0.00 0.00 35.89 4.04
541 558 5.376854 ACCCGAATTCAAATCTTGACTTG 57.623 39.130 6.22 0.00 39.87 3.16
586 603 7.410485 TCTATCGAATCATATTCTTCGGATCG 58.590 38.462 13.60 0.00 43.29 3.69
723 748 3.625878 TCCTAGGATGGGACATGCCATG 61.626 54.545 7.62 2.40 42.78 3.66
724 749 1.416459 TCCTAGGATGGGACATGCCAT 60.416 52.381 7.62 4.34 42.78 4.40
725 750 0.030195 TCCTAGGATGGGACATGCCA 60.030 55.000 7.62 0.00 42.78 4.92
726 751 2.854253 TCCTAGGATGGGACATGCC 58.146 57.895 7.62 0.00 42.78 4.40
774 799 7.419711 AACCTCAGAGATTTCGGACTAAATA 57.580 36.000 0.00 0.00 0.00 1.40
788 813 4.142359 GCGAGAGTGATTAAACCTCAGAGA 60.142 45.833 0.00 0.00 0.00 3.10
934 981 1.222115 ACCGTTCTTGCGCTTGTCTC 61.222 55.000 9.73 0.00 0.00 3.36
1029 1076 3.507233 CCCTTGTATGTGTCAAGTTGCAT 59.493 43.478 0.00 0.00 40.15 3.96
1065 1112 0.398696 TCAGTGGCCGCCTTTTCTTA 59.601 50.000 14.07 0.00 0.00 2.10
1215 1287 5.010922 TGGCAGCTCAATTAACAAAATGACT 59.989 36.000 0.00 0.00 0.00 3.41
1253 1325 6.428083 GGGGATAACCTCCTTTTTGAAAAA 57.572 37.500 2.83 2.83 44.28 1.94
1265 1337 1.049289 AGACGCTGGGGGATAACCTC 61.049 60.000 0.00 0.00 41.63 3.85
1266 1338 0.620700 AAGACGCTGGGGGATAACCT 60.621 55.000 0.00 0.00 40.03 3.50
1267 1339 0.179054 GAAGACGCTGGGGGATAACC 60.179 60.000 0.00 0.00 39.11 2.85
1268 1340 0.539986 TGAAGACGCTGGGGGATAAC 59.460 55.000 0.00 0.00 0.00 1.89
1269 1341 1.416401 GATGAAGACGCTGGGGGATAA 59.584 52.381 0.00 0.00 0.00 1.75
1270 1342 1.048601 GATGAAGACGCTGGGGGATA 58.951 55.000 0.00 0.00 0.00 2.59
1271 1343 0.982852 TGATGAAGACGCTGGGGGAT 60.983 55.000 0.00 0.00 0.00 3.85
1272 1344 0.982852 ATGATGAAGACGCTGGGGGA 60.983 55.000 0.00 0.00 0.00 4.81
1273 1345 0.533755 GATGATGAAGACGCTGGGGG 60.534 60.000 0.00 0.00 0.00 5.40
1274 1346 0.178767 TGATGATGAAGACGCTGGGG 59.821 55.000 0.00 0.00 0.00 4.96
1275 1347 1.137675 TCTGATGATGAAGACGCTGGG 59.862 52.381 0.00 0.00 0.00 4.45
1276 1348 2.591571 TCTGATGATGAAGACGCTGG 57.408 50.000 0.00 0.00 0.00 4.85
1277 1349 2.864946 CCTTCTGATGATGAAGACGCTG 59.135 50.000 5.21 0.00 42.37 5.18
1278 1350 2.762887 TCCTTCTGATGATGAAGACGCT 59.237 45.455 5.21 0.00 42.37 5.07
1279 1351 3.170791 TCCTTCTGATGATGAAGACGC 57.829 47.619 5.21 0.00 42.37 5.19
1302 1374 0.386352 CACACGTTTCTGGCAGCATG 60.386 55.000 10.34 6.90 40.87 4.06
1303 1375 0.534877 TCACACGTTTCTGGCAGCAT 60.535 50.000 10.34 0.00 0.00 3.79
1304 1376 0.534877 ATCACACGTTTCTGGCAGCA 60.535 50.000 10.34 0.00 0.00 4.41
1305 1377 0.593128 AATCACACGTTTCTGGCAGC 59.407 50.000 10.34 0.00 0.00 5.25
1306 1378 3.498397 AGTTAATCACACGTTTCTGGCAG 59.502 43.478 8.58 8.58 0.00 4.85
1307 1379 3.249799 CAGTTAATCACACGTTTCTGGCA 59.750 43.478 0.00 0.00 0.00 4.92
1308 1380 3.364964 CCAGTTAATCACACGTTTCTGGC 60.365 47.826 0.00 0.00 35.55 4.85
1309 1381 4.062293 TCCAGTTAATCACACGTTTCTGG 58.938 43.478 0.00 0.00 41.47 3.86
1310 1382 4.750098 ACTCCAGTTAATCACACGTTTCTG 59.250 41.667 0.00 0.00 0.00 3.02
1311 1383 4.957296 ACTCCAGTTAATCACACGTTTCT 58.043 39.130 0.00 0.00 0.00 2.52
1312 1384 5.668558 AACTCCAGTTAATCACACGTTTC 57.331 39.130 0.00 0.00 36.32 2.78
1336 1408 5.414144 CGTCTGCAGATGGATAGATAGAAGA 59.586 44.000 25.59 0.00 0.00 2.87
1337 1409 5.639757 CGTCTGCAGATGGATAGATAGAAG 58.360 45.833 25.59 0.00 0.00 2.85
1349 1444 1.662629 GATGTTCACCGTCTGCAGATG 59.337 52.381 26.20 26.20 0.00 2.90
1413 1508 1.366494 CGAATCGATTTGACGGCGC 60.366 57.895 18.99 0.00 0.00 6.53
1449 1544 5.759963 ACGTTTGAGATCGATATAGGTCAC 58.240 41.667 0.00 0.00 0.00 3.67
1455 1550 6.566141 TGGTTTGACGTTTGAGATCGATATA 58.434 36.000 0.00 0.00 0.00 0.86
1481 1576 8.888579 TCTTCAAAAGAAAAGAGTTAGATCGT 57.111 30.769 0.00 0.00 33.83 3.73
1599 1695 0.396435 TCTTGCGATTCACCACCACT 59.604 50.000 0.00 0.00 0.00 4.00
1888 1984 6.819146 AGTGCAGATGCTAATATGAGATGATG 59.181 38.462 6.35 0.00 42.66 3.07
1960 2075 0.539438 TCATTTTTCCCCAGCGCTGT 60.539 50.000 33.75 11.89 0.00 4.40
1990 2105 1.871039 ACCGTACATGCACAAGTTCAC 59.129 47.619 0.00 0.00 0.00 3.18
2029 2146 8.696175 CGTGAACGATAATTTGCACAGTATATA 58.304 33.333 0.00 0.00 43.02 0.86
2030 2147 7.223971 ACGTGAACGATAATTTGCACAGTATAT 59.776 33.333 10.26 0.00 43.02 0.86
2031 2148 6.532302 ACGTGAACGATAATTTGCACAGTATA 59.468 34.615 10.26 0.00 43.02 1.47
2045 2162 0.457166 CGCCTTGGACGTGAACGATA 60.457 55.000 10.26 0.00 43.02 2.92
2046 2163 1.736645 CGCCTTGGACGTGAACGAT 60.737 57.895 10.26 0.00 43.02 3.73
2063 2503 3.976793 TGTAACTCGGGCTTATCTACG 57.023 47.619 0.00 0.00 0.00 3.51
2075 2515 3.483574 CGGCAGCATAAAGTTGTAACTCG 60.484 47.826 0.00 0.00 38.57 4.18
2094 2534 7.648112 TGTATATATCGAAGATCATAAAGCGGC 59.352 37.037 0.00 0.00 45.12 6.53
2174 2614 5.414144 CCCAGTTGCAAAAAGGAAAGAAAAA 59.586 36.000 0.00 0.00 0.00 1.94
2183 2623 2.837498 CTTTCCCCAGTTGCAAAAAGG 58.163 47.619 0.00 3.16 0.00 3.11
2195 2635 2.371179 TCAATTTTGCATGCTTTCCCCA 59.629 40.909 20.33 0.00 0.00 4.96
2411 2902 5.350365 TGTGTAGATTAATGAAGCGGTGTTC 59.650 40.000 0.00 0.00 0.00 3.18
2506 3002 6.085555 GGTAACTTTGGAAAGAAAGAAGGG 57.914 41.667 6.13 0.00 39.31 3.95
2576 3077 1.426621 GCATCAGGCGACACACATG 59.573 57.895 0.00 0.00 0.00 3.21
2587 3088 0.542702 ACCCCAACCTTTGCATCAGG 60.543 55.000 10.35 10.35 37.45 3.86
2613 3114 4.136051 CCCATGTGCCAAAGTCAATTTTT 58.864 39.130 0.00 0.00 0.00 1.94
2614 3115 3.390639 TCCCATGTGCCAAAGTCAATTTT 59.609 39.130 0.00 0.00 0.00 1.82
2615 3116 2.971330 TCCCATGTGCCAAAGTCAATTT 59.029 40.909 0.00 0.00 0.00 1.82
2616 3117 2.607499 TCCCATGTGCCAAAGTCAATT 58.393 42.857 0.00 0.00 0.00 2.32
2617 3118 2.307496 TCCCATGTGCCAAAGTCAAT 57.693 45.000 0.00 0.00 0.00 2.57
2618 3119 2.170166 GATCCCATGTGCCAAAGTCAA 58.830 47.619 0.00 0.00 0.00 3.18
2619 3120 1.075212 TGATCCCATGTGCCAAAGTCA 59.925 47.619 0.00 0.00 0.00 3.41
2620 3121 1.838112 TGATCCCATGTGCCAAAGTC 58.162 50.000 0.00 0.00 0.00 3.01
2621 3122 2.537633 ATGATCCCATGTGCCAAAGT 57.462 45.000 0.00 0.00 0.00 2.66
2622 3123 2.291465 CGTATGATCCCATGTGCCAAAG 59.709 50.000 0.00 0.00 34.31 2.77
2623 3124 2.296792 CGTATGATCCCATGTGCCAAA 58.703 47.619 0.00 0.00 34.31 3.28
2624 3125 1.965935 CGTATGATCCCATGTGCCAA 58.034 50.000 0.00 0.00 34.31 4.52
2625 3126 0.534877 GCGTATGATCCCATGTGCCA 60.535 55.000 0.00 0.00 34.31 4.92
2626 3127 0.250467 AGCGTATGATCCCATGTGCC 60.250 55.000 0.00 0.00 35.90 5.01
2627 3128 1.151668 GAGCGTATGATCCCATGTGC 58.848 55.000 0.00 0.00 35.67 4.57
2628 3129 1.800805 GGAGCGTATGATCCCATGTG 58.199 55.000 8.10 0.00 45.19 3.21
2635 3136 1.729472 CGATGTCGGGAGCGTATGATC 60.729 57.143 0.00 0.00 35.37 2.92
2636 3137 0.241213 CGATGTCGGGAGCGTATGAT 59.759 55.000 0.00 0.00 35.37 2.45
2637 3138 1.652563 CGATGTCGGGAGCGTATGA 59.347 57.895 0.00 0.00 35.37 2.15
2638 3139 4.228451 CGATGTCGGGAGCGTATG 57.772 61.111 0.00 0.00 35.37 2.39
2648 3149 5.524511 TGAAGTGTTATTTTCCGATGTCG 57.475 39.130 0.00 0.00 39.44 4.35
2649 3150 8.638565 CATTTTGAAGTGTTATTTTCCGATGTC 58.361 33.333 0.00 0.00 0.00 3.06
2650 3151 8.141268 ACATTTTGAAGTGTTATTTTCCGATGT 58.859 29.630 0.00 0.00 0.00 3.06
2651 3152 8.519492 ACATTTTGAAGTGTTATTTTCCGATG 57.481 30.769 0.00 0.00 0.00 3.84
2652 3153 8.356657 TGACATTTTGAAGTGTTATTTTCCGAT 58.643 29.630 0.00 0.00 0.00 4.18
2653 3154 7.708051 TGACATTTTGAAGTGTTATTTTCCGA 58.292 30.769 0.00 0.00 0.00 4.55
2654 3155 7.922505 TGACATTTTGAAGTGTTATTTTCCG 57.077 32.000 0.00 0.00 0.00 4.30
2757 3258 9.415544 GCTTTTCATGAGACATCTTTTGTAATT 57.584 29.630 0.00 0.00 39.18 1.40
2758 3259 8.031277 GGCTTTTCATGAGACATCTTTTGTAAT 58.969 33.333 0.00 0.00 39.18 1.89
2759 3260 7.370383 GGCTTTTCATGAGACATCTTTTGTAA 58.630 34.615 0.00 0.00 39.18 2.41
2760 3261 6.071952 GGGCTTTTCATGAGACATCTTTTGTA 60.072 38.462 0.00 0.00 39.18 2.41
2761 3262 5.279156 GGGCTTTTCATGAGACATCTTTTGT 60.279 40.000 0.00 0.00 42.79 2.83
2762 3263 5.047519 AGGGCTTTTCATGAGACATCTTTTG 60.048 40.000 0.00 0.00 0.00 2.44
2763 3264 5.082425 AGGGCTTTTCATGAGACATCTTTT 58.918 37.500 0.00 0.00 0.00 2.27
2764 3265 4.670765 AGGGCTTTTCATGAGACATCTTT 58.329 39.130 0.00 0.00 0.00 2.52
2765 3266 4.313020 AGGGCTTTTCATGAGACATCTT 57.687 40.909 0.00 0.00 0.00 2.40
2766 3267 4.313020 AAGGGCTTTTCATGAGACATCT 57.687 40.909 0.00 0.00 0.00 2.90
2767 3268 5.397142 AAAAGGGCTTTTCATGAGACATC 57.603 39.130 0.00 0.00 38.27 3.06
2768 3269 5.813513 AAAAAGGGCTTTTCATGAGACAT 57.186 34.783 0.00 0.00 41.45 3.06
2769 3270 6.097554 TGTTAAAAAGGGCTTTTCATGAGACA 59.902 34.615 0.00 0.00 41.45 3.41
2770 3271 6.420903 GTGTTAAAAAGGGCTTTTCATGAGAC 59.579 38.462 0.00 0.00 41.45 3.36
2771 3272 6.323739 AGTGTTAAAAAGGGCTTTTCATGAGA 59.676 34.615 0.00 0.00 41.45 3.27
2772 3273 6.421801 CAGTGTTAAAAAGGGCTTTTCATGAG 59.578 38.462 0.00 0.00 41.45 2.90
2773 3274 6.097554 TCAGTGTTAAAAAGGGCTTTTCATGA 59.902 34.615 0.00 0.00 41.45 3.07
2774 3275 6.279882 TCAGTGTTAAAAAGGGCTTTTCATG 58.720 36.000 0.00 0.00 41.45 3.07
2775 3276 6.478512 TCAGTGTTAAAAAGGGCTTTTCAT 57.521 33.333 0.00 0.00 41.45 2.57
2776 3277 5.923733 TCAGTGTTAAAAAGGGCTTTTCA 57.076 34.783 0.00 0.00 41.45 2.69
2777 3278 7.786178 AATTCAGTGTTAAAAAGGGCTTTTC 57.214 32.000 0.00 0.00 41.45 2.29
2778 3279 8.458052 CAAAATTCAGTGTTAAAAAGGGCTTTT 58.542 29.630 0.00 0.00 43.88 2.27
2779 3280 7.609918 ACAAAATTCAGTGTTAAAAAGGGCTTT 59.390 29.630 0.00 0.00 0.00 3.51
2780 3281 7.109501 ACAAAATTCAGTGTTAAAAAGGGCTT 58.890 30.769 0.00 0.00 0.00 4.35
2781 3282 6.649155 ACAAAATTCAGTGTTAAAAAGGGCT 58.351 32.000 0.00 0.00 0.00 5.19
2782 3283 6.761242 AGACAAAATTCAGTGTTAAAAAGGGC 59.239 34.615 0.00 0.00 0.00 5.19
2783 3284 8.716646 AAGACAAAATTCAGTGTTAAAAAGGG 57.283 30.769 0.00 0.00 0.00 3.95
2784 3285 9.586435 AGAAGACAAAATTCAGTGTTAAAAAGG 57.414 29.630 0.00 0.00 0.00 3.11
2789 3290 9.173021 TGAGAAGAAGACAAAATTCAGTGTTAA 57.827 29.630 0.00 0.00 0.00 2.01
2790 3291 8.612619 GTGAGAAGAAGACAAAATTCAGTGTTA 58.387 33.333 0.00 0.00 0.00 2.41
2791 3292 7.415653 GGTGAGAAGAAGACAAAATTCAGTGTT 60.416 37.037 0.00 0.00 0.00 3.32
2792 3293 6.038714 GGTGAGAAGAAGACAAAATTCAGTGT 59.961 38.462 0.00 0.00 0.00 3.55
2793 3294 6.433766 GGTGAGAAGAAGACAAAATTCAGTG 58.566 40.000 0.00 0.00 0.00 3.66
2794 3295 5.237344 CGGTGAGAAGAAGACAAAATTCAGT 59.763 40.000 0.00 0.00 0.00 3.41
2795 3296 5.683859 CGGTGAGAAGAAGACAAAATTCAG 58.316 41.667 0.00 0.00 0.00 3.02
2796 3297 4.024048 GCGGTGAGAAGAAGACAAAATTCA 60.024 41.667 0.00 0.00 0.00 2.57
2797 3298 4.214332 AGCGGTGAGAAGAAGACAAAATTC 59.786 41.667 0.00 0.00 0.00 2.17
2798 3299 4.137543 AGCGGTGAGAAGAAGACAAAATT 58.862 39.130 0.00 0.00 0.00 1.82
2799 3300 3.744660 AGCGGTGAGAAGAAGACAAAAT 58.255 40.909 0.00 0.00 0.00 1.82
2800 3301 3.194005 AGCGGTGAGAAGAAGACAAAA 57.806 42.857 0.00 0.00 0.00 2.44
2801 3302 2.910688 AGCGGTGAGAAGAAGACAAA 57.089 45.000 0.00 0.00 0.00 2.83
2802 3303 2.626266 TGTAGCGGTGAGAAGAAGACAA 59.374 45.455 0.00 0.00 0.00 3.18
2803 3304 2.030185 GTGTAGCGGTGAGAAGAAGACA 60.030 50.000 0.00 0.00 0.00 3.41
2804 3305 2.030185 TGTGTAGCGGTGAGAAGAAGAC 60.030 50.000 0.00 0.00 0.00 3.01
2805 3306 2.235891 TGTGTAGCGGTGAGAAGAAGA 58.764 47.619 0.00 0.00 0.00 2.87
2806 3307 2.724977 TGTGTAGCGGTGAGAAGAAG 57.275 50.000 0.00 0.00 0.00 2.85
2807 3308 3.462483 TTTGTGTAGCGGTGAGAAGAA 57.538 42.857 0.00 0.00 0.00 2.52
2808 3309 3.181469 ACTTTTGTGTAGCGGTGAGAAGA 60.181 43.478 0.00 0.00 0.00 2.87
2809 3310 3.131396 ACTTTTGTGTAGCGGTGAGAAG 58.869 45.455 0.00 0.00 0.00 2.85
2810 3311 3.188159 ACTTTTGTGTAGCGGTGAGAA 57.812 42.857 0.00 0.00 0.00 2.87
2811 3312 2.869801 CAACTTTTGTGTAGCGGTGAGA 59.130 45.455 0.00 0.00 0.00 3.27
2812 3313 2.612212 ACAACTTTTGTGTAGCGGTGAG 59.388 45.455 0.00 0.00 43.48 3.51
2813 3314 2.610374 GACAACTTTTGTGTAGCGGTGA 59.390 45.455 0.00 0.00 45.52 4.02
2814 3315 2.598907 CGACAACTTTTGTGTAGCGGTG 60.599 50.000 0.00 0.00 45.52 4.94
2815 3316 1.595794 CGACAACTTTTGTGTAGCGGT 59.404 47.619 0.00 0.00 45.52 5.68
2816 3317 1.595794 ACGACAACTTTTGTGTAGCGG 59.404 47.619 0.00 0.00 45.52 5.52
2817 3318 3.313274 AACGACAACTTTTGTGTAGCG 57.687 42.857 0.00 0.00 45.52 4.26
2818 3319 7.673810 AAATAAACGACAACTTTTGTGTAGC 57.326 32.000 0.00 0.00 45.52 3.58
2841 3342 5.514914 GCTCACAAAGTCATTTCACGAAAAA 59.485 36.000 0.00 0.00 33.56 1.94
2842 3343 5.034152 GCTCACAAAGTCATTTCACGAAAA 58.966 37.500 0.00 0.00 33.56 2.29
2843 3344 4.095632 TGCTCACAAAGTCATTTCACGAAA 59.904 37.500 0.00 0.00 34.46 3.46
2844 3345 3.625313 TGCTCACAAAGTCATTTCACGAA 59.375 39.130 0.00 0.00 0.00 3.85
2845 3346 3.002246 GTGCTCACAAAGTCATTTCACGA 59.998 43.478 0.00 0.00 0.00 4.35
2846 3347 3.291585 GTGCTCACAAAGTCATTTCACG 58.708 45.455 0.00 0.00 0.00 4.35
2847 3348 3.242739 ACGTGCTCACAAAGTCATTTCAC 60.243 43.478 0.00 0.00 0.00 3.18
2848 3349 2.942376 ACGTGCTCACAAAGTCATTTCA 59.058 40.909 0.00 0.00 0.00 2.69
2849 3350 3.609103 ACGTGCTCACAAAGTCATTTC 57.391 42.857 0.00 0.00 0.00 2.17
2850 3351 4.377021 TCTACGTGCTCACAAAGTCATTT 58.623 39.130 0.00 0.00 0.00 2.32
2851 3352 3.990092 TCTACGTGCTCACAAAGTCATT 58.010 40.909 0.00 0.00 0.00 2.57
2852 3353 3.660501 TCTACGTGCTCACAAAGTCAT 57.339 42.857 0.00 0.00 0.00 3.06
2853 3354 3.446310 TTCTACGTGCTCACAAAGTCA 57.554 42.857 0.00 0.00 0.00 3.41
2854 3355 3.741344 ACATTCTACGTGCTCACAAAGTC 59.259 43.478 0.00 0.00 0.00 3.01
2855 3356 3.728845 ACATTCTACGTGCTCACAAAGT 58.271 40.909 0.00 0.00 0.00 2.66
2856 3357 3.181540 CGACATTCTACGTGCTCACAAAG 60.182 47.826 0.00 0.00 0.00 2.77
2857 3358 2.729360 CGACATTCTACGTGCTCACAAA 59.271 45.455 0.00 0.00 0.00 2.83
2858 3359 2.030628 TCGACATTCTACGTGCTCACAA 60.031 45.455 0.00 0.00 0.00 3.33
2859 3360 1.538075 TCGACATTCTACGTGCTCACA 59.462 47.619 0.00 0.00 0.00 3.58
2860 3361 2.159558 TCTCGACATTCTACGTGCTCAC 60.160 50.000 0.00 0.00 0.00 3.51
2861 3362 2.081462 TCTCGACATTCTACGTGCTCA 58.919 47.619 0.00 0.00 0.00 4.26
2862 3363 2.826979 TCTCGACATTCTACGTGCTC 57.173 50.000 0.00 0.00 0.00 4.26
2863 3364 2.423892 ACATCTCGACATTCTACGTGCT 59.576 45.455 0.00 0.00 0.00 4.40
2864 3365 2.798680 ACATCTCGACATTCTACGTGC 58.201 47.619 0.00 0.00 0.00 5.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.