Multiple sequence alignment - TraesCS5A01G243900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G243900 chr5A 100.000 2796 0 0 1 2796 458201767 458204562 0.000000e+00 5164.0
1 TraesCS5A01G243900 chr5A 89.465 1177 99 13 972 2143 456034330 456033174 0.000000e+00 1463.0
2 TraesCS5A01G243900 chr5A 90.152 264 18 5 356 616 456058376 456058118 1.240000e-88 337.0
3 TraesCS5A01G243900 chr5A 82.390 318 28 14 616 928 456058042 456057748 4.620000e-63 252.0
4 TraesCS5A01G243900 chr5D 92.267 1332 79 11 677 2002 356846224 356847537 0.000000e+00 1868.0
5 TraesCS5A01G243900 chr5D 90.370 270 19 5 342 609 356845312 356845576 5.730000e-92 348.0
6 TraesCS5A01G243900 chr5D 82.576 132 14 2 1 132 356845193 356845315 1.060000e-19 108.0
7 TraesCS5A01G243900 chr5B 87.867 1500 114 35 695 2165 421645190 421646650 0.000000e+00 1700.0
8 TraesCS5A01G243900 chr5B 91.732 254 19 2 356 607 421644739 421644992 4.430000e-93 351.0
9 TraesCS5A01G243900 chr5B 89.583 96 10 0 2217 2312 421647235 421647330 3.780000e-24 122.0
10 TraesCS5A01G243900 chr5B 74.528 318 44 19 2409 2721 421647700 421647985 1.370000e-18 104.0
11 TraesCS5A01G243900 chr5B 82.955 88 13 2 2171 2256 421646849 421646936 8.300000e-11 78.7
12 TraesCS5A01G243900 chr3A 97.143 35 1 0 318 352 492755937 492755971 3.010000e-05 60.2
13 TraesCS5A01G243900 chr1A 85.965 57 6 2 318 372 537531923 537531867 3.010000e-05 60.2
14 TraesCS5A01G243900 chr7A 94.444 36 2 0 316 351 411535297 411535332 3.890000e-04 56.5
15 TraesCS5A01G243900 chr1D 100.000 28 0 0 318 345 4454723 4454750 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G243900 chr5A 458201767 458204562 2795 False 5164.000000 5164 100.000000 1 2796 1 chr5A.!!$F1 2795
1 TraesCS5A01G243900 chr5A 456033174 456034330 1156 True 1463.000000 1463 89.465000 972 2143 1 chr5A.!!$R1 1171
2 TraesCS5A01G243900 chr5A 456057748 456058376 628 True 294.500000 337 86.271000 356 928 2 chr5A.!!$R2 572
3 TraesCS5A01G243900 chr5D 356845193 356847537 2344 False 774.666667 1868 88.404333 1 2002 3 chr5D.!!$F1 2001
4 TraesCS5A01G243900 chr5B 421644739 421647985 3246 False 471.140000 1700 85.333000 356 2721 5 chr5B.!!$F1 2365

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
907 1552 0.038618 CCCACGCCTTAAAAACAGCC 60.039 55.0 0.0 0.0 0.0 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2086 2766 0.0293 TGTTTTCGCTGAGTGCTTGC 59.971 50.0 0.0 0.0 40.11 4.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 6.747125 TCAAATCATCTTTAGTTTGCTGCAA 58.253 32.000 11.69 11.69 32.95 4.08
28 29 8.500773 CAAATCATCTTTAGTTTGCTGCAATTT 58.499 29.630 16.77 9.85 0.00 1.82
29 30 8.611654 AATCATCTTTAGTTTGCTGCAATTTT 57.388 26.923 16.77 7.39 0.00 1.82
30 31 8.611654 ATCATCTTTAGTTTGCTGCAATTTTT 57.388 26.923 16.77 4.97 0.00 1.94
83 84 1.411977 CTGATCCATTCTCGCTCCTGT 59.588 52.381 0.00 0.00 0.00 4.00
84 85 1.410517 TGATCCATTCTCGCTCCTGTC 59.589 52.381 0.00 0.00 0.00 3.51
85 86 1.410517 GATCCATTCTCGCTCCTGTCA 59.589 52.381 0.00 0.00 0.00 3.58
86 87 1.266178 TCCATTCTCGCTCCTGTCAA 58.734 50.000 0.00 0.00 0.00 3.18
87 88 1.833630 TCCATTCTCGCTCCTGTCAAT 59.166 47.619 0.00 0.00 0.00 2.57
88 89 3.031013 TCCATTCTCGCTCCTGTCAATA 58.969 45.455 0.00 0.00 0.00 1.90
89 90 3.450817 TCCATTCTCGCTCCTGTCAATAA 59.549 43.478 0.00 0.00 0.00 1.40
90 91 3.557595 CCATTCTCGCTCCTGTCAATAAC 59.442 47.826 0.00 0.00 0.00 1.89
113 114 5.934625 ACTCAATATAACTCGCCATCCATTC 59.065 40.000 0.00 0.00 0.00 2.67
117 118 1.972872 AACTCGCCATCCATTCCATC 58.027 50.000 0.00 0.00 0.00 3.51
138 139 2.021355 CTTGCAAGCTACTCCCTCTG 57.979 55.000 14.65 0.00 0.00 3.35
139 140 1.277557 CTTGCAAGCTACTCCCTCTGT 59.722 52.381 14.65 0.00 0.00 3.41
140 141 0.610174 TGCAAGCTACTCCCTCTGTG 59.390 55.000 0.00 0.00 0.00 3.66
141 142 0.898320 GCAAGCTACTCCCTCTGTGA 59.102 55.000 0.00 0.00 0.00 3.58
142 143 1.276421 GCAAGCTACTCCCTCTGTGAA 59.724 52.381 0.00 0.00 0.00 3.18
143 144 2.933056 GCAAGCTACTCCCTCTGTGAAC 60.933 54.545 0.00 0.00 0.00 3.18
144 145 2.564947 CAAGCTACTCCCTCTGTGAACT 59.435 50.000 0.00 0.00 0.00 3.01
145 146 2.896039 AGCTACTCCCTCTGTGAACTT 58.104 47.619 0.00 0.00 0.00 2.66
146 147 4.048970 AGCTACTCCCTCTGTGAACTTA 57.951 45.455 0.00 0.00 0.00 2.24
147 148 3.764972 AGCTACTCCCTCTGTGAACTTAC 59.235 47.826 0.00 0.00 0.00 2.34
148 149 3.510360 GCTACTCCCTCTGTGAACTTACA 59.490 47.826 0.00 0.00 0.00 2.41
150 151 3.577919 ACTCCCTCTGTGAACTTACAGT 58.422 45.455 5.89 0.00 46.32 3.55
151 152 3.967987 ACTCCCTCTGTGAACTTACAGTT 59.032 43.478 5.89 0.00 46.32 3.16
152 153 5.145564 ACTCCCTCTGTGAACTTACAGTTA 58.854 41.667 5.89 0.00 46.32 2.24
153 154 5.010820 ACTCCCTCTGTGAACTTACAGTTAC 59.989 44.000 5.89 0.00 46.32 2.50
154 155 4.897076 TCCCTCTGTGAACTTACAGTTACA 59.103 41.667 5.89 0.00 46.32 2.41
155 156 5.010719 TCCCTCTGTGAACTTACAGTTACAG 59.989 44.000 14.05 14.05 46.32 2.74
156 157 5.010719 CCCTCTGTGAACTTACAGTTACAGA 59.989 44.000 18.03 18.03 46.32 3.41
158 159 6.085555 TCTGTGAACTTACAGTTACAGAGG 57.914 41.667 16.57 3.51 46.32 3.69
159 160 5.010719 TCTGTGAACTTACAGTTACAGAGGG 59.989 44.000 16.57 3.30 46.32 4.30
160 161 4.897076 TGTGAACTTACAGTTACAGAGGGA 59.103 41.667 0.00 0.00 38.80 4.20
161 162 5.010719 TGTGAACTTACAGTTACAGAGGGAG 59.989 44.000 0.00 0.00 38.80 4.30
162 163 5.010820 GTGAACTTACAGTTACAGAGGGAGT 59.989 44.000 0.00 0.00 38.80 3.85
163 164 6.208204 GTGAACTTACAGTTACAGAGGGAGTA 59.792 42.308 0.00 0.00 38.80 2.59
164 165 6.433404 TGAACTTACAGTTACAGAGGGAGTAG 59.567 42.308 0.00 0.00 38.80 2.57
165 166 5.890049 ACTTACAGTTACAGAGGGAGTAGT 58.110 41.667 0.00 0.00 0.00 2.73
166 167 7.025520 ACTTACAGTTACAGAGGGAGTAGTA 57.974 40.000 0.00 0.00 0.00 1.82
167 168 7.111466 ACTTACAGTTACAGAGGGAGTAGTAG 58.889 42.308 0.00 0.00 0.00 2.57
168 169 5.517620 ACAGTTACAGAGGGAGTAGTAGT 57.482 43.478 0.00 0.00 0.00 2.73
169 170 5.254901 ACAGTTACAGAGGGAGTAGTAGTG 58.745 45.833 0.00 0.00 0.00 2.74
170 171 5.013913 ACAGTTACAGAGGGAGTAGTAGTGA 59.986 44.000 0.00 0.00 0.00 3.41
171 172 6.123651 CAGTTACAGAGGGAGTAGTAGTGAT 58.876 44.000 0.00 0.00 0.00 3.06
172 173 6.261381 CAGTTACAGAGGGAGTAGTAGTGATC 59.739 46.154 0.00 0.00 0.00 2.92
173 174 6.159046 AGTTACAGAGGGAGTAGTAGTGATCT 59.841 42.308 0.00 0.00 0.00 2.75
174 175 7.347748 AGTTACAGAGGGAGTAGTAGTGATCTA 59.652 40.741 0.00 0.00 0.00 1.98
175 176 6.578313 ACAGAGGGAGTAGTAGTGATCTAA 57.422 41.667 0.00 0.00 0.00 2.10
176 177 6.971340 ACAGAGGGAGTAGTAGTGATCTAAA 58.029 40.000 0.00 0.00 0.00 1.85
177 178 7.411808 ACAGAGGGAGTAGTAGTGATCTAAAA 58.588 38.462 0.00 0.00 0.00 1.52
178 179 7.339976 ACAGAGGGAGTAGTAGTGATCTAAAAC 59.660 40.741 0.00 0.00 0.00 2.43
179 180 6.543100 AGAGGGAGTAGTAGTGATCTAAAACG 59.457 42.308 0.00 0.00 0.00 3.60
180 181 6.186234 AGGGAGTAGTAGTGATCTAAAACGT 58.814 40.000 0.00 0.00 0.00 3.99
181 182 6.318396 AGGGAGTAGTAGTGATCTAAAACGTC 59.682 42.308 0.00 0.00 0.00 4.34
182 183 6.318396 GGGAGTAGTAGTGATCTAAAACGTCT 59.682 42.308 0.00 0.00 0.00 4.18
183 184 7.148103 GGGAGTAGTAGTGATCTAAAACGTCTT 60.148 40.741 0.00 0.00 0.00 3.01
184 185 8.887717 GGAGTAGTAGTGATCTAAAACGTCTTA 58.112 37.037 0.00 0.00 0.00 2.10
189 190 9.790389 AGTAGTGATCTAAAACGTCTTATCTTG 57.210 33.333 0.00 0.00 0.00 3.02
190 191 9.570488 GTAGTGATCTAAAACGTCTTATCTTGT 57.430 33.333 0.00 0.00 0.00 3.16
192 193 9.141400 AGTGATCTAAAACGTCTTATCTTGTTC 57.859 33.333 0.00 0.00 0.00 3.18
193 194 8.922676 GTGATCTAAAACGTCTTATCTTGTTCA 58.077 33.333 0.00 0.00 0.00 3.18
194 195 9.483916 TGATCTAAAACGTCTTATCTTGTTCAA 57.516 29.630 0.00 0.00 0.00 2.69
195 196 9.959775 GATCTAAAACGTCTTATCTTGTTCAAG 57.040 33.333 6.24 6.24 0.00 3.02
196 197 8.882415 TCTAAAACGTCTTATCTTGTTCAAGT 57.118 30.769 11.52 3.56 0.00 3.16
197 198 9.321562 TCTAAAACGTCTTATCTTGTTCAAGTT 57.678 29.630 11.52 6.85 0.00 2.66
198 199 9.931210 CTAAAACGTCTTATCTTGTTCAAGTTT 57.069 29.630 11.52 5.31 0.00 2.66
201 202 9.878599 AAACGTCTTATCTTGTTCAAGTTTATG 57.121 29.630 11.52 7.95 0.00 1.90
202 203 7.519002 ACGTCTTATCTTGTTCAAGTTTATGC 58.481 34.615 11.52 0.00 0.00 3.14
203 204 6.678663 CGTCTTATCTTGTTCAAGTTTATGCG 59.321 38.462 11.52 8.04 0.00 4.73
204 205 7.519002 GTCTTATCTTGTTCAAGTTTATGCGT 58.481 34.615 11.52 0.00 0.00 5.24
205 206 7.478667 GTCTTATCTTGTTCAAGTTTATGCGTG 59.521 37.037 11.52 0.00 0.00 5.34
206 207 4.481930 TCTTGTTCAAGTTTATGCGTGG 57.518 40.909 11.52 0.00 0.00 4.94
207 208 2.697431 TGTTCAAGTTTATGCGTGGC 57.303 45.000 0.00 0.00 0.00 5.01
208 209 2.226330 TGTTCAAGTTTATGCGTGGCT 58.774 42.857 0.00 0.00 0.00 4.75
209 210 2.031245 TGTTCAAGTTTATGCGTGGCTG 60.031 45.455 0.00 0.00 0.00 4.85
210 211 1.164411 TCAAGTTTATGCGTGGCTGG 58.836 50.000 0.00 0.00 0.00 4.85
211 212 0.881118 CAAGTTTATGCGTGGCTGGT 59.119 50.000 0.00 0.00 0.00 4.00
212 213 1.269448 CAAGTTTATGCGTGGCTGGTT 59.731 47.619 0.00 0.00 0.00 3.67
213 214 1.165270 AGTTTATGCGTGGCTGGTTC 58.835 50.000 0.00 0.00 0.00 3.62
214 215 0.179200 GTTTATGCGTGGCTGGTTCG 60.179 55.000 0.00 0.00 0.00 3.95
215 216 1.302383 TTTATGCGTGGCTGGTTCGG 61.302 55.000 0.00 0.00 0.00 4.30
225 226 4.243008 TGGTTCGGCCAACGCTCA 62.243 61.111 2.24 0.00 45.94 4.26
226 227 2.975799 GGTTCGGCCAACGCTCAA 60.976 61.111 2.24 0.00 43.86 3.02
227 228 2.251371 GTTCGGCCAACGCTCAAC 59.749 61.111 2.24 0.00 43.86 3.18
228 229 2.975799 TTCGGCCAACGCTCAACC 60.976 61.111 2.24 0.00 43.86 3.77
229 230 3.469863 TTCGGCCAACGCTCAACCT 62.470 57.895 2.24 0.00 43.86 3.50
230 231 2.047655 CGGCCAACGCTCAACCTA 60.048 61.111 2.24 0.00 34.82 3.08
231 232 1.449601 CGGCCAACGCTCAACCTAT 60.450 57.895 2.24 0.00 34.82 2.57
232 233 1.429148 CGGCCAACGCTCAACCTATC 61.429 60.000 2.24 0.00 34.82 2.08
233 234 0.107654 GGCCAACGCTCAACCTATCT 60.108 55.000 0.00 0.00 34.44 1.98
234 235 1.009829 GCCAACGCTCAACCTATCTG 58.990 55.000 0.00 0.00 0.00 2.90
235 236 1.405526 GCCAACGCTCAACCTATCTGA 60.406 52.381 0.00 0.00 0.00 3.27
236 237 2.935238 GCCAACGCTCAACCTATCTGAA 60.935 50.000 0.00 0.00 0.00 3.02
237 238 2.932614 CCAACGCTCAACCTATCTGAAG 59.067 50.000 0.00 0.00 0.00 3.02
238 239 3.589988 CAACGCTCAACCTATCTGAAGT 58.410 45.455 0.00 0.00 0.00 3.01
239 240 3.963428 ACGCTCAACCTATCTGAAGTT 57.037 42.857 0.00 0.00 0.00 2.66
240 241 4.273148 ACGCTCAACCTATCTGAAGTTT 57.727 40.909 0.00 0.00 0.00 2.66
241 242 4.642429 ACGCTCAACCTATCTGAAGTTTT 58.358 39.130 0.00 0.00 0.00 2.43
242 243 4.452455 ACGCTCAACCTATCTGAAGTTTTG 59.548 41.667 0.00 0.00 0.00 2.44
243 244 4.670221 CGCTCAACCTATCTGAAGTTTTGC 60.670 45.833 0.00 0.00 0.00 3.68
244 245 4.216257 GCTCAACCTATCTGAAGTTTTGCA 59.784 41.667 0.00 0.00 0.00 4.08
245 246 5.618640 GCTCAACCTATCTGAAGTTTTGCAG 60.619 44.000 0.00 0.00 0.00 4.41
246 247 5.376625 TCAACCTATCTGAAGTTTTGCAGT 58.623 37.500 0.00 0.00 33.90 4.40
247 248 5.470098 TCAACCTATCTGAAGTTTTGCAGTC 59.530 40.000 0.00 0.00 33.90 3.51
248 249 4.973168 ACCTATCTGAAGTTTTGCAGTCA 58.027 39.130 0.00 0.00 33.90 3.41
249 250 4.757149 ACCTATCTGAAGTTTTGCAGTCAC 59.243 41.667 0.00 0.00 33.90 3.67
250 251 4.999950 CCTATCTGAAGTTTTGCAGTCACT 59.000 41.667 0.00 0.00 33.90 3.41
251 252 4.825546 ATCTGAAGTTTTGCAGTCACTG 57.174 40.909 0.00 0.00 33.90 3.66
252 253 3.872696 TCTGAAGTTTTGCAGTCACTGA 58.127 40.909 9.70 0.00 32.44 3.41
253 254 3.623060 TCTGAAGTTTTGCAGTCACTGAC 59.377 43.478 9.70 0.38 32.44 3.51
254 255 2.351418 TGAAGTTTTGCAGTCACTGACG 59.649 45.455 9.70 0.81 37.67 4.35
255 256 2.024176 AGTTTTGCAGTCACTGACGT 57.976 45.000 9.70 0.00 37.67 4.34
256 257 1.665679 AGTTTTGCAGTCACTGACGTG 59.334 47.619 9.70 4.34 42.59 4.49
257 258 1.396996 GTTTTGCAGTCACTGACGTGT 59.603 47.619 9.70 0.00 41.89 4.49
258 259 1.006086 TTTGCAGTCACTGACGTGTG 58.994 50.000 9.70 0.00 41.89 3.82
259 260 0.809636 TTGCAGTCACTGACGTGTGG 60.810 55.000 9.70 0.00 41.89 4.17
260 261 1.956170 GCAGTCACTGACGTGTGGG 60.956 63.158 9.70 0.00 41.89 4.61
261 262 1.956170 CAGTCACTGACGTGTGGGC 60.956 63.158 0.00 0.00 41.89 5.36
262 263 2.665185 GTCACTGACGTGTGGGCC 60.665 66.667 0.00 0.00 41.89 5.80
263 264 2.842462 TCACTGACGTGTGGGCCT 60.842 61.111 4.53 0.00 41.89 5.19
264 265 2.666190 CACTGACGTGTGGGCCTG 60.666 66.667 4.53 0.00 36.39 4.85
265 266 3.161450 ACTGACGTGTGGGCCTGT 61.161 61.111 4.53 0.00 0.00 4.00
266 267 2.666190 CTGACGTGTGGGCCTGTG 60.666 66.667 4.53 0.00 0.00 3.66
267 268 3.460672 CTGACGTGTGGGCCTGTGT 62.461 63.158 4.53 0.00 0.00 3.72
268 269 2.972505 GACGTGTGGGCCTGTGTG 60.973 66.667 4.53 0.00 0.00 3.82
270 271 4.935495 CGTGTGGGCCTGTGTGCT 62.935 66.667 4.53 0.00 0.00 4.40
271 272 2.519302 GTGTGGGCCTGTGTGCTT 60.519 61.111 4.53 0.00 0.00 3.91
272 273 2.127232 GTGTGGGCCTGTGTGCTTT 61.127 57.895 4.53 0.00 0.00 3.51
273 274 1.827789 TGTGGGCCTGTGTGCTTTC 60.828 57.895 4.53 0.00 0.00 2.62
274 275 1.529244 GTGGGCCTGTGTGCTTTCT 60.529 57.895 4.53 0.00 0.00 2.52
275 276 1.109323 GTGGGCCTGTGTGCTTTCTT 61.109 55.000 4.53 0.00 0.00 2.52
276 277 0.396974 TGGGCCTGTGTGCTTTCTTT 60.397 50.000 4.53 0.00 0.00 2.52
277 278 0.752658 GGGCCTGTGTGCTTTCTTTT 59.247 50.000 0.84 0.00 0.00 2.27
278 279 1.960689 GGGCCTGTGTGCTTTCTTTTA 59.039 47.619 0.84 0.00 0.00 1.52
279 280 2.562738 GGGCCTGTGTGCTTTCTTTTAT 59.437 45.455 0.84 0.00 0.00 1.40
280 281 3.578688 GGCCTGTGTGCTTTCTTTTATG 58.421 45.455 0.00 0.00 0.00 1.90
281 282 3.578688 GCCTGTGTGCTTTCTTTTATGG 58.421 45.455 0.00 0.00 0.00 2.74
282 283 3.614870 GCCTGTGTGCTTTCTTTTATGGG 60.615 47.826 0.00 0.00 0.00 4.00
283 284 3.056607 CCTGTGTGCTTTCTTTTATGGGG 60.057 47.826 0.00 0.00 0.00 4.96
284 285 3.571590 TGTGTGCTTTCTTTTATGGGGT 58.428 40.909 0.00 0.00 0.00 4.95
285 286 3.320541 TGTGTGCTTTCTTTTATGGGGTG 59.679 43.478 0.00 0.00 0.00 4.61
286 287 2.896685 TGTGCTTTCTTTTATGGGGTGG 59.103 45.455 0.00 0.00 0.00 4.61
287 288 2.233676 GTGCTTTCTTTTATGGGGTGGG 59.766 50.000 0.00 0.00 0.00 4.61
288 289 1.207089 GCTTTCTTTTATGGGGTGGGC 59.793 52.381 0.00 0.00 0.00 5.36
289 290 1.831106 CTTTCTTTTATGGGGTGGGCC 59.169 52.381 0.00 0.00 0.00 5.80
290 291 1.089123 TTCTTTTATGGGGTGGGCCT 58.911 50.000 4.53 0.00 34.45 5.19
291 292 0.334676 TCTTTTATGGGGTGGGCCTG 59.665 55.000 4.53 0.00 34.45 4.85
292 293 1.305718 TTTTATGGGGTGGGCCTGC 60.306 57.895 4.53 0.00 34.45 4.85
293 294 3.653664 TTTATGGGGTGGGCCTGCG 62.654 63.158 4.53 0.00 34.45 5.18
309 310 3.760035 CGTGCCTAGCCGTGGACT 61.760 66.667 0.00 0.00 0.00 3.85
310 311 2.663196 GTGCCTAGCCGTGGACTT 59.337 61.111 0.00 0.00 0.00 3.01
311 312 1.741770 GTGCCTAGCCGTGGACTTG 60.742 63.158 0.00 0.00 0.00 3.16
312 313 2.214216 TGCCTAGCCGTGGACTTGT 61.214 57.895 0.00 0.00 0.00 3.16
313 314 1.741770 GCCTAGCCGTGGACTTGTG 60.742 63.158 0.00 0.00 0.00 3.33
314 315 1.079127 CCTAGCCGTGGACTTGTGG 60.079 63.158 0.00 0.00 0.00 4.17
315 316 1.079127 CTAGCCGTGGACTTGTGGG 60.079 63.158 0.00 0.00 0.00 4.61
316 317 2.521958 CTAGCCGTGGACTTGTGGGG 62.522 65.000 0.00 0.00 0.00 4.96
317 318 4.265056 GCCGTGGACTTGTGGGGT 62.265 66.667 0.00 0.00 0.00 4.95
318 319 2.032071 CCGTGGACTTGTGGGGTC 59.968 66.667 0.00 0.00 0.00 4.46
319 320 2.516888 CCGTGGACTTGTGGGGTCT 61.517 63.158 0.00 0.00 34.47 3.85
320 321 1.450211 CGTGGACTTGTGGGGTCTT 59.550 57.895 0.00 0.00 34.47 3.01
321 322 0.179029 CGTGGACTTGTGGGGTCTTT 60.179 55.000 0.00 0.00 34.47 2.52
322 323 1.749286 CGTGGACTTGTGGGGTCTTTT 60.749 52.381 0.00 0.00 34.47 2.27
323 324 2.485835 CGTGGACTTGTGGGGTCTTTTA 60.486 50.000 0.00 0.00 34.47 1.52
324 325 3.763057 GTGGACTTGTGGGGTCTTTTAT 58.237 45.455 0.00 0.00 34.47 1.40
325 326 4.149598 GTGGACTTGTGGGGTCTTTTATT 58.850 43.478 0.00 0.00 34.47 1.40
326 327 5.318630 GTGGACTTGTGGGGTCTTTTATTA 58.681 41.667 0.00 0.00 34.47 0.98
327 328 5.414765 GTGGACTTGTGGGGTCTTTTATTAG 59.585 44.000 0.00 0.00 34.47 1.73
328 329 5.073965 TGGACTTGTGGGGTCTTTTATTAGT 59.926 40.000 0.00 0.00 34.47 2.24
329 330 6.008331 GGACTTGTGGGGTCTTTTATTAGTT 58.992 40.000 0.00 0.00 34.47 2.24
330 331 6.492429 GGACTTGTGGGGTCTTTTATTAGTTT 59.508 38.462 0.00 0.00 34.47 2.66
331 332 7.666804 GGACTTGTGGGGTCTTTTATTAGTTTA 59.333 37.037 0.00 0.00 34.47 2.01
332 333 8.400184 ACTTGTGGGGTCTTTTATTAGTTTAC 57.600 34.615 0.00 0.00 0.00 2.01
333 334 8.000127 ACTTGTGGGGTCTTTTATTAGTTTACA 59.000 33.333 0.00 0.00 0.00 2.41
334 335 7.989416 TGTGGGGTCTTTTATTAGTTTACAG 57.011 36.000 0.00 0.00 0.00 2.74
335 336 7.747690 TGTGGGGTCTTTTATTAGTTTACAGA 58.252 34.615 0.00 0.00 0.00 3.41
336 337 7.881232 TGTGGGGTCTTTTATTAGTTTACAGAG 59.119 37.037 0.00 0.00 0.00 3.35
337 338 7.336176 GTGGGGTCTTTTATTAGTTTACAGAGG 59.664 40.741 0.00 0.00 0.00 3.69
338 339 6.827251 GGGGTCTTTTATTAGTTTACAGAGGG 59.173 42.308 0.00 0.00 0.00 4.30
339 340 7.311486 GGGGTCTTTTATTAGTTTACAGAGGGA 60.311 40.741 0.00 0.00 0.00 4.20
340 341 7.769507 GGGTCTTTTATTAGTTTACAGAGGGAG 59.230 40.741 0.00 0.00 0.00 4.30
341 342 8.319881 GGTCTTTTATTAGTTTACAGAGGGAGT 58.680 37.037 0.00 0.00 0.00 3.85
361 362 5.810587 GGAGTACTTTGTTGATGATTAGCGA 59.189 40.000 0.00 0.00 0.00 4.93
366 367 3.198409 TGTTGATGATTAGCGATGCCT 57.802 42.857 0.00 0.00 0.00 4.75
382 383 1.237285 GCCTGTGTCGCCATGTCTTT 61.237 55.000 0.00 0.00 0.00 2.52
391 392 4.336993 TGTCGCCATGTCTTTACTTGTTTT 59.663 37.500 0.00 0.00 0.00 2.43
413 414 5.070770 TGTGTTCTTGTTCATTGCAGTTT 57.929 34.783 0.00 0.00 0.00 2.66
599 603 2.098117 GGTTGTATTCATCTGCTGCCAC 59.902 50.000 0.00 0.00 0.00 5.01
609 613 2.113807 TCTGCTGCCACTGTGATCTAT 58.886 47.619 9.86 0.00 0.00 1.98
611 615 3.068732 TCTGCTGCCACTGTGATCTATAC 59.931 47.826 9.86 0.00 0.00 1.47
645 1221 1.135315 GTGTGATGCGTGACATGGC 59.865 57.895 0.35 0.00 39.84 4.40
657 1233 1.539869 ACATGGCAGTCCCTGGAGT 60.540 57.895 0.00 0.00 32.94 3.85
674 1281 5.731957 TGGAGTACACTGCAGTTACATAA 57.268 39.130 26.59 15.80 39.44 1.90
675 1282 6.104146 TGGAGTACACTGCAGTTACATAAA 57.896 37.500 26.59 14.68 39.44 1.40
676 1283 6.707290 TGGAGTACACTGCAGTTACATAAAT 58.293 36.000 26.59 14.58 39.44 1.40
677 1284 7.842982 TGGAGTACACTGCAGTTACATAAATA 58.157 34.615 26.59 13.07 39.44 1.40
678 1285 7.762615 TGGAGTACACTGCAGTTACATAAATAC 59.237 37.037 26.59 16.18 39.44 1.89
679 1286 7.762615 GGAGTACACTGCAGTTACATAAATACA 59.237 37.037 26.59 2.41 34.20 2.29
680 1287 9.314321 GAGTACACTGCAGTTACATAAATACAT 57.686 33.333 26.59 12.69 0.00 2.29
681 1288 9.667107 AGTACACTGCAGTTACATAAATACATT 57.333 29.630 26.59 10.58 0.00 2.71
730 1370 0.249280 CGCTCCACGTGCCATACATA 60.249 55.000 10.91 0.00 36.87 2.29
736 1376 1.151777 ACGTGCCATACATAGTGCGC 61.152 55.000 0.00 0.00 0.00 6.09
742 1382 2.288213 GCCATACATAGTGCGCTAGACA 60.288 50.000 13.28 0.28 0.00 3.41
748 1388 2.921634 TAGTGCGCTAGACAACTCTG 57.078 50.000 9.73 0.00 0.00 3.35
756 1396 2.300437 GCTAGACAACTCTGGTGTCCTT 59.700 50.000 11.55 0.00 33.40 3.36
874 1519 0.943673 CAAGGATCACACGTGTGCAA 59.056 50.000 37.70 25.27 45.25 4.08
907 1552 0.038618 CCCACGCCTTAAAAACAGCC 60.039 55.000 0.00 0.00 0.00 4.85
985 1632 3.445805 CAGTACCCCAACACACAAAACTT 59.554 43.478 0.00 0.00 0.00 2.66
996 1647 3.023119 ACACAAAACTTGCACAGGATCA 58.977 40.909 0.00 0.00 0.00 2.92
1137 1788 2.270205 CACCTCTGCGCCTTCCAT 59.730 61.111 4.18 0.00 0.00 3.41
1161 1812 4.124351 GGGGACGACATGACGCGA 62.124 66.667 15.93 0.00 36.70 5.87
1541 2192 2.209064 GACCTCGCCGACTGTAAGCA 62.209 60.000 2.92 0.00 37.60 3.91
1576 2249 2.093783 CCGTGATTTTCGTTCACCTAGC 59.906 50.000 0.00 0.00 40.29 3.42
1578 2251 4.171005 CGTGATTTTCGTTCACCTAGCTA 58.829 43.478 0.00 0.00 40.29 3.32
1714 2387 4.740822 ATCCACCCGCTGGCCAAC 62.741 66.667 7.01 0.00 40.39 3.77
1827 2500 0.235665 GTGTTCTCGTACGTGTCCGA 59.764 55.000 16.05 2.21 37.88 4.55
1839 2512 0.108615 GTGTCCGAGAGATGGGTGTG 60.109 60.000 0.00 0.00 0.00 3.82
1914 2593 1.347707 TCTTGGAAATGGAGCGAGTGT 59.652 47.619 0.00 0.00 0.00 3.55
1945 2625 4.755411 TGATGGACTTCCGAATAACAGTC 58.245 43.478 0.00 0.00 39.43 3.51
2006 2686 9.129532 GAGTTAGAAGGGATCAAATGAATCAAT 57.870 33.333 0.00 0.00 0.00 2.57
2036 2716 7.509546 TCTTTATTAGAGGAGGCAAACCATAG 58.490 38.462 0.00 0.00 39.06 2.23
2046 2726 5.091261 AGGCAAACCATAGTCTACTCTTG 57.909 43.478 0.00 0.00 39.06 3.02
2055 2735 8.602472 ACCATAGTCTACTCTTGAGATTTTCT 57.398 34.615 4.49 0.09 0.00 2.52
2067 2747 7.282585 TCTTGAGATTTTCTCTTCACTTCCAA 58.717 34.615 6.13 0.00 43.73 3.53
2073 2753 8.574737 AGATTTTCTCTTCACTTCCAAAGATTG 58.425 33.333 0.00 0.00 31.45 2.67
2074 2754 5.695851 TTCTCTTCACTTCCAAAGATTGC 57.304 39.130 0.00 0.00 31.45 3.56
2076 2756 6.114187 TCTCTTCACTTCCAAAGATTGCTA 57.886 37.500 0.00 0.00 31.45 3.49
2084 2764 8.641541 TCACTTCCAAAGATTGCTAAAAAGATT 58.358 29.630 0.00 0.00 0.00 2.40
2096 2776 5.942872 GCTAAAAAGATTAGCAAGCACTCA 58.057 37.500 13.70 0.00 44.93 3.41
2110 2790 2.731217 GCACTCAGCGAAAACAACATT 58.269 42.857 0.00 0.00 0.00 2.71
2124 2804 9.305110 CGAAAACAACATTTGCTTTCATATTTC 57.695 29.630 12.73 0.00 42.76 2.17
2133 2815 9.028185 CATTTGCTTTCATATTTCTAAGAAGCC 57.972 33.333 0.00 0.00 0.00 4.35
2138 2820 8.131731 GCTTTCATATTTCTAAGAAGCCGAAAT 58.868 33.333 0.00 0.00 39.75 2.17
2149 3129 6.436843 AAGAAGCCGAAATTAATGTACAGG 57.563 37.500 0.33 0.00 0.00 4.00
2154 3134 3.881089 CCGAAATTAATGTACAGGACCCC 59.119 47.826 0.33 0.00 0.00 4.95
2205 3188 6.701145 TGGAAACAACAAATACTGCTGTAA 57.299 33.333 7.59 0.00 33.10 2.41
2207 3190 7.548097 TGGAAACAACAAATACTGCTGTAAAA 58.452 30.769 7.59 0.00 33.10 1.52
2242 3455 5.877012 CCTTCTGCACAACAATACTACTGAT 59.123 40.000 0.00 0.00 0.00 2.90
2245 3458 7.827819 TCTGCACAACAATACTACTGATAAC 57.172 36.000 0.00 0.00 0.00 1.89
2263 3476 9.445786 ACTGATAACAAATACAGAAACGTTTTG 57.554 29.630 15.89 16.26 34.88 2.44
2296 3509 3.151554 ACGAATACAGAAACCCCCAAAC 58.848 45.455 0.00 0.00 0.00 2.93
2302 3515 3.236047 ACAGAAACCCCCAAACCAATAC 58.764 45.455 0.00 0.00 0.00 1.89
2304 3517 3.258123 CAGAAACCCCCAAACCAATACAG 59.742 47.826 0.00 0.00 0.00 2.74
2312 3525 6.011451 ACCCCCAAACCAATACAGAATTACTA 60.011 38.462 0.00 0.00 0.00 1.82
2315 3528 6.037830 CCCAAACCAATACAGAATTACTACCG 59.962 42.308 0.00 0.00 0.00 4.02
2318 3765 6.158023 ACCAATACAGAATTACTACCGGAG 57.842 41.667 9.46 3.52 0.00 4.63
2454 3941 5.480642 TGAACACAAAACCATGGCATAAT 57.519 34.783 13.04 0.00 0.00 1.28
2455 3942 6.596309 TGAACACAAAACCATGGCATAATA 57.404 33.333 13.04 0.00 0.00 0.98
2456 3943 6.629128 TGAACACAAAACCATGGCATAATAG 58.371 36.000 13.04 0.00 0.00 1.73
2457 3944 6.210385 TGAACACAAAACCATGGCATAATAGT 59.790 34.615 13.04 0.00 0.00 2.12
2458 3945 5.964758 ACACAAAACCATGGCATAATAGTG 58.035 37.500 13.04 13.68 0.00 2.74
2459 3946 5.480073 ACACAAAACCATGGCATAATAGTGT 59.520 36.000 13.04 14.31 0.00 3.55
2460 3947 6.014669 ACACAAAACCATGGCATAATAGTGTT 60.015 34.615 13.04 0.00 32.04 3.32
2461 3948 7.177568 ACACAAAACCATGGCATAATAGTGTTA 59.822 33.333 13.04 0.00 32.04 2.41
2462 3949 7.701924 CACAAAACCATGGCATAATAGTGTTAG 59.298 37.037 13.04 0.00 0.00 2.34
2463 3950 7.396055 ACAAAACCATGGCATAATAGTGTTAGT 59.604 33.333 13.04 0.00 0.00 2.24
2464 3951 7.954666 AAACCATGGCATAATAGTGTTAGTT 57.045 32.000 13.04 0.00 0.00 2.24
2465 3952 7.954666 AACCATGGCATAATAGTGTTAGTTT 57.045 32.000 13.04 0.00 0.00 2.66
2466 3953 7.954666 ACCATGGCATAATAGTGTTAGTTTT 57.045 32.000 13.04 0.00 0.00 2.43
2467 3954 8.361169 ACCATGGCATAATAGTGTTAGTTTTT 57.639 30.769 13.04 0.00 0.00 1.94
2468 3955 8.466798 ACCATGGCATAATAGTGTTAGTTTTTC 58.533 33.333 13.04 0.00 0.00 2.29
2469 3956 8.686334 CCATGGCATAATAGTGTTAGTTTTTCT 58.314 33.333 0.00 0.00 0.00 2.52
2511 3998 6.716898 AGTGTTAGCTCAAACCGTAAATAC 57.283 37.500 0.00 0.00 0.00 1.89
2517 4004 3.682858 GCTCAAACCGTAAATACTGCTCA 59.317 43.478 0.00 0.00 0.00 4.26
2518 4005 4.201724 GCTCAAACCGTAAATACTGCTCAG 60.202 45.833 0.00 0.00 0.00 3.35
2522 4009 2.093658 ACCGTAAATACTGCTCAGGTGG 60.094 50.000 1.66 0.00 0.00 4.61
2524 4011 2.676750 CGTAAATACTGCTCAGGTGGCA 60.677 50.000 1.66 0.00 38.10 4.92
2540 4057 1.737816 GCAATGGGCCAGCATGTAG 59.262 57.895 13.78 0.00 36.11 2.74
2544 4061 1.511613 ATGGGCCAGCATGTAGTAGT 58.488 50.000 13.78 0.00 0.00 2.73
2566 4083 2.508526 GGCTAACATATGGGCCAGAAG 58.491 52.381 22.84 7.20 43.59 2.85
2567 4084 2.508526 GCTAACATATGGGCCAGAAGG 58.491 52.381 13.78 7.10 38.23 3.46
2573 4090 1.635817 TATGGGCCAGAAGGAGTGCC 61.636 60.000 13.78 0.00 43.26 5.01
2574 4091 3.650950 GGGCCAGAAGGAGTGCCA 61.651 66.667 4.39 0.00 45.83 4.92
2575 4092 2.360475 GGCCAGAAGGAGTGCCAC 60.360 66.667 0.00 0.00 43.46 5.01
2576 4093 2.743928 GCCAGAAGGAGTGCCACG 60.744 66.667 0.00 0.00 36.89 4.94
2577 4094 2.743718 CCAGAAGGAGTGCCACGT 59.256 61.111 0.00 0.00 36.89 4.49
2578 4095 1.669115 CCAGAAGGAGTGCCACGTG 60.669 63.158 9.08 9.08 36.89 4.49
2579 4096 1.069765 CAGAAGGAGTGCCACGTGT 59.930 57.895 15.65 0.00 36.29 4.49
2580 4097 0.532862 CAGAAGGAGTGCCACGTGTT 60.533 55.000 15.65 0.00 36.29 3.32
2581 4098 1.045407 AGAAGGAGTGCCACGTGTTA 58.955 50.000 15.65 0.00 36.29 2.41
2582 4099 1.414919 AGAAGGAGTGCCACGTGTTAA 59.585 47.619 15.65 0.00 36.29 2.01
2583 4100 2.038557 AGAAGGAGTGCCACGTGTTAAT 59.961 45.455 15.65 1.50 36.29 1.40
2584 4101 1.808411 AGGAGTGCCACGTGTTAATG 58.192 50.000 15.65 0.00 36.29 1.90
2585 4102 1.071699 AGGAGTGCCACGTGTTAATGT 59.928 47.619 15.65 0.00 36.29 2.71
2586 4103 1.196808 GGAGTGCCACGTGTTAATGTG 59.803 52.381 15.65 0.00 42.11 3.21
2591 4108 3.332706 CACGTGTTAATGTGGGGGT 57.667 52.632 7.58 0.00 39.29 4.95
2596 4113 0.701731 TGTTAATGTGGGGGTGGAGG 59.298 55.000 0.00 0.00 0.00 4.30
2607 4124 1.765904 GGGGTGGAGGAGAGAGAAATC 59.234 57.143 0.00 0.00 0.00 2.17
2611 4128 4.283212 GGGTGGAGGAGAGAGAAATCATAG 59.717 50.000 0.00 0.00 0.00 2.23
2644 4161 9.719355 TTATGTAAGAGTTGATTTCTTAGCACA 57.281 29.630 0.00 0.00 37.70 4.57
2655 4172 7.463544 TGATTTCTTAGCACAAATATGTCACG 58.536 34.615 0.00 0.00 37.82 4.35
2659 4176 5.347635 TCTTAGCACAAATATGTCACGTCAC 59.652 40.000 0.00 0.00 37.82 3.67
2661 4178 3.812609 AGCACAAATATGTCACGTCACAA 59.187 39.130 0.00 0.00 37.82 3.33
2676 4194 4.876107 ACGTCACAATTTAGGGATTGCTAG 59.124 41.667 0.00 0.00 39.97 3.42
2687 4205 9.920946 ATTTAGGGATTGCTAGTTATTGAAAGA 57.079 29.630 0.00 0.00 0.00 2.52
2725 4243 8.378172 TCAAAGATATAGCTAACAAATTCCCG 57.622 34.615 0.00 0.00 0.00 5.14
2726 4244 7.990886 TCAAAGATATAGCTAACAAATTCCCGT 59.009 33.333 0.00 0.00 0.00 5.28
2727 4245 8.621286 CAAAGATATAGCTAACAAATTCCCGTT 58.379 33.333 0.00 0.00 0.00 4.44
2728 4246 8.747538 AAGATATAGCTAACAAATTCCCGTTT 57.252 30.769 0.00 0.00 0.00 3.60
2729 4247 8.747538 AGATATAGCTAACAAATTCCCGTTTT 57.252 30.769 0.00 0.00 0.00 2.43
2730 4248 9.185680 AGATATAGCTAACAAATTCCCGTTTTT 57.814 29.630 0.00 0.00 0.00 1.94
2734 4252 7.883229 AGCTAACAAATTCCCGTTTTTAATG 57.117 32.000 0.00 0.00 0.00 1.90
2735 4253 6.367695 AGCTAACAAATTCCCGTTTTTAATGC 59.632 34.615 0.00 0.00 0.00 3.56
2736 4254 6.146347 GCTAACAAATTCCCGTTTTTAATGCA 59.854 34.615 0.00 0.00 0.00 3.96
2737 4255 6.927294 AACAAATTCCCGTTTTTAATGCAA 57.073 29.167 0.00 0.00 0.00 4.08
2738 4256 7.503521 AACAAATTCCCGTTTTTAATGCAAT 57.496 28.000 0.00 0.00 0.00 3.56
2739 4257 7.127917 ACAAATTCCCGTTTTTAATGCAATC 57.872 32.000 0.00 0.00 0.00 2.67
2740 4258 6.934083 ACAAATTCCCGTTTTTAATGCAATCT 59.066 30.769 0.00 0.00 0.00 2.40
2741 4259 7.443879 ACAAATTCCCGTTTTTAATGCAATCTT 59.556 29.630 0.00 0.00 0.00 2.40
2742 4260 7.977789 AATTCCCGTTTTTAATGCAATCTTT 57.022 28.000 0.00 0.00 0.00 2.52
2743 4261 9.495572 AAATTCCCGTTTTTAATGCAATCTTTA 57.504 25.926 0.00 0.00 0.00 1.85
2744 4262 9.495572 AATTCCCGTTTTTAATGCAATCTTTAA 57.504 25.926 0.00 0.00 0.00 1.52
2745 4263 8.888579 TTCCCGTTTTTAATGCAATCTTTAAA 57.111 26.923 0.00 0.00 33.03 1.52
2746 4264 9.495572 TTCCCGTTTTTAATGCAATCTTTAAAT 57.504 25.926 4.30 0.00 34.15 1.40
2747 4265 9.495572 TCCCGTTTTTAATGCAATCTTTAAATT 57.504 25.926 4.30 0.00 34.15 1.82
2754 4272 8.972262 TTAATGCAATCTTTAAATTACACGCA 57.028 26.923 0.00 0.00 0.00 5.24
2755 4273 7.881643 AATGCAATCTTTAAATTACACGCAA 57.118 28.000 0.00 0.00 0.00 4.85
2756 4274 7.881643 ATGCAATCTTTAAATTACACGCAAA 57.118 28.000 0.00 0.00 0.00 3.68
2757 4275 7.700322 TGCAATCTTTAAATTACACGCAAAA 57.300 28.000 0.00 0.00 0.00 2.44
2758 4276 7.559845 TGCAATCTTTAAATTACACGCAAAAC 58.440 30.769 0.00 0.00 0.00 2.43
2759 4277 7.436673 TGCAATCTTTAAATTACACGCAAAACT 59.563 29.630 0.00 0.00 0.00 2.66
2760 4278 8.272866 GCAATCTTTAAATTACACGCAAAACTT 58.727 29.630 0.00 0.00 0.00 2.66
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
46 47 9.802039 AATGGATCAGGTTTAACTTACAGTTAA 57.198 29.630 5.20 5.20 45.78 2.01
83 84 7.602644 GGATGGCGAGTTATATTGAGTTATTGA 59.397 37.037 0.00 0.00 0.00 2.57
84 85 7.387673 TGGATGGCGAGTTATATTGAGTTATTG 59.612 37.037 0.00 0.00 0.00 1.90
85 86 7.450074 TGGATGGCGAGTTATATTGAGTTATT 58.550 34.615 0.00 0.00 0.00 1.40
86 87 7.004555 TGGATGGCGAGTTATATTGAGTTAT 57.995 36.000 0.00 0.00 0.00 1.89
87 88 6.413783 TGGATGGCGAGTTATATTGAGTTA 57.586 37.500 0.00 0.00 0.00 2.24
88 89 5.290493 TGGATGGCGAGTTATATTGAGTT 57.710 39.130 0.00 0.00 0.00 3.01
89 90 4.955811 TGGATGGCGAGTTATATTGAGT 57.044 40.909 0.00 0.00 0.00 3.41
90 91 5.352569 GGAATGGATGGCGAGTTATATTGAG 59.647 44.000 0.00 0.00 0.00 3.02
143 144 7.066043 CACTACTACTCCCTCTGTAACTGTAAG 59.934 44.444 0.00 0.00 42.29 2.34
144 145 6.883217 CACTACTACTCCCTCTGTAACTGTAA 59.117 42.308 0.00 0.00 0.00 2.41
145 146 6.214208 TCACTACTACTCCCTCTGTAACTGTA 59.786 42.308 0.00 0.00 0.00 2.74
146 147 5.013913 TCACTACTACTCCCTCTGTAACTGT 59.986 44.000 0.00 0.00 0.00 3.55
147 148 5.498393 TCACTACTACTCCCTCTGTAACTG 58.502 45.833 0.00 0.00 0.00 3.16
148 149 5.775813 TCACTACTACTCCCTCTGTAACT 57.224 43.478 0.00 0.00 0.00 2.24
149 150 6.358991 AGATCACTACTACTCCCTCTGTAAC 58.641 44.000 0.00 0.00 0.00 2.50
150 151 6.578313 AGATCACTACTACTCCCTCTGTAA 57.422 41.667 0.00 0.00 0.00 2.41
151 152 7.687383 TTAGATCACTACTACTCCCTCTGTA 57.313 40.000 0.00 0.00 0.00 2.74
152 153 6.578313 TTAGATCACTACTACTCCCTCTGT 57.422 41.667 0.00 0.00 0.00 3.41
153 154 7.467539 CGTTTTAGATCACTACTACTCCCTCTG 60.468 44.444 0.00 0.00 0.00 3.35
154 155 6.543100 CGTTTTAGATCACTACTACTCCCTCT 59.457 42.308 0.00 0.00 0.00 3.69
155 156 6.318396 ACGTTTTAGATCACTACTACTCCCTC 59.682 42.308 0.00 0.00 0.00 4.30
156 157 6.186234 ACGTTTTAGATCACTACTACTCCCT 58.814 40.000 0.00 0.00 0.00 4.20
157 158 6.318396 AGACGTTTTAGATCACTACTACTCCC 59.682 42.308 0.00 0.00 0.00 4.30
158 159 7.319142 AGACGTTTTAGATCACTACTACTCC 57.681 40.000 0.00 0.00 0.00 3.85
163 164 9.790389 CAAGATAAGACGTTTTAGATCACTACT 57.210 33.333 4.75 0.00 0.00 2.57
164 165 9.570488 ACAAGATAAGACGTTTTAGATCACTAC 57.430 33.333 4.75 0.00 0.00 2.73
166 167 9.141400 GAACAAGATAAGACGTTTTAGATCACT 57.859 33.333 4.75 0.00 0.00 3.41
167 168 8.922676 TGAACAAGATAAGACGTTTTAGATCAC 58.077 33.333 4.75 0.00 0.00 3.06
168 169 9.483916 TTGAACAAGATAAGACGTTTTAGATCA 57.516 29.630 4.75 0.00 0.00 2.92
169 170 9.959775 CTTGAACAAGATAAGACGTTTTAGATC 57.040 33.333 8.65 0.00 40.79 2.75
170 171 9.490379 ACTTGAACAAGATAAGACGTTTTAGAT 57.510 29.630 19.35 0.00 40.79 1.98
171 172 8.882415 ACTTGAACAAGATAAGACGTTTTAGA 57.118 30.769 19.35 0.00 40.79 2.10
172 173 9.931210 AAACTTGAACAAGATAAGACGTTTTAG 57.069 29.630 19.35 0.00 40.79 1.85
175 176 9.878599 CATAAACTTGAACAAGATAAGACGTTT 57.121 29.630 19.35 10.58 40.79 3.60
176 177 8.015658 GCATAAACTTGAACAAGATAAGACGTT 58.984 33.333 19.35 1.15 40.79 3.99
177 178 7.519002 GCATAAACTTGAACAAGATAAGACGT 58.481 34.615 19.35 0.00 40.79 4.34
178 179 6.678663 CGCATAAACTTGAACAAGATAAGACG 59.321 38.462 19.35 12.21 40.79 4.18
179 180 7.478667 CACGCATAAACTTGAACAAGATAAGAC 59.521 37.037 19.35 5.72 40.79 3.01
180 181 7.360861 CCACGCATAAACTTGAACAAGATAAGA 60.361 37.037 19.35 2.78 40.79 2.10
181 182 6.742718 CCACGCATAAACTTGAACAAGATAAG 59.257 38.462 19.35 10.58 40.79 1.73
182 183 6.607689 CCACGCATAAACTTGAACAAGATAA 58.392 36.000 19.35 5.93 40.79 1.75
183 184 5.391523 GCCACGCATAAACTTGAACAAGATA 60.392 40.000 19.35 12.36 40.79 1.98
184 185 4.615912 GCCACGCATAAACTTGAACAAGAT 60.616 41.667 19.35 6.54 40.79 2.40
185 186 3.304391 GCCACGCATAAACTTGAACAAGA 60.304 43.478 19.35 0.00 40.79 3.02
186 187 2.979813 GCCACGCATAAACTTGAACAAG 59.020 45.455 12.22 12.22 43.79 3.16
187 188 2.621055 AGCCACGCATAAACTTGAACAA 59.379 40.909 0.00 0.00 0.00 2.83
188 189 2.031245 CAGCCACGCATAAACTTGAACA 60.031 45.455 0.00 0.00 0.00 3.18
189 190 2.584791 CAGCCACGCATAAACTTGAAC 58.415 47.619 0.00 0.00 0.00 3.18
190 191 1.539388 CCAGCCACGCATAAACTTGAA 59.461 47.619 0.00 0.00 0.00 2.69
191 192 1.164411 CCAGCCACGCATAAACTTGA 58.836 50.000 0.00 0.00 0.00 3.02
192 193 0.881118 ACCAGCCACGCATAAACTTG 59.119 50.000 0.00 0.00 0.00 3.16
193 194 1.539827 GAACCAGCCACGCATAAACTT 59.460 47.619 0.00 0.00 0.00 2.66
194 195 1.165270 GAACCAGCCACGCATAAACT 58.835 50.000 0.00 0.00 0.00 2.66
195 196 0.179200 CGAACCAGCCACGCATAAAC 60.179 55.000 0.00 0.00 0.00 2.01
196 197 1.302383 CCGAACCAGCCACGCATAAA 61.302 55.000 0.00 0.00 0.00 1.40
197 198 1.743623 CCGAACCAGCCACGCATAA 60.744 57.895 0.00 0.00 0.00 1.90
198 199 2.125310 CCGAACCAGCCACGCATA 60.125 61.111 0.00 0.00 0.00 3.14
209 210 2.975799 TTGAGCGTTGGCCGAACC 60.976 61.111 0.00 0.00 41.24 3.62
210 211 2.251371 GTTGAGCGTTGGCCGAAC 59.749 61.111 0.00 0.65 41.24 3.95
211 212 2.102109 TAGGTTGAGCGTTGGCCGAA 62.102 55.000 0.00 0.00 41.24 4.30
212 213 1.895020 ATAGGTTGAGCGTTGGCCGA 61.895 55.000 0.00 0.00 41.24 5.54
213 214 1.429148 GATAGGTTGAGCGTTGGCCG 61.429 60.000 0.00 0.00 41.24 6.13
214 215 0.107654 AGATAGGTTGAGCGTTGGCC 60.108 55.000 0.00 0.00 41.24 5.36
215 216 1.009829 CAGATAGGTTGAGCGTTGGC 58.990 55.000 0.00 0.00 40.37 4.52
216 217 2.672961 TCAGATAGGTTGAGCGTTGG 57.327 50.000 0.00 0.00 0.00 3.77
217 218 3.589988 ACTTCAGATAGGTTGAGCGTTG 58.410 45.455 0.00 0.00 0.00 4.10
218 219 3.963428 ACTTCAGATAGGTTGAGCGTT 57.037 42.857 0.00 0.00 0.00 4.84
219 220 3.963428 AACTTCAGATAGGTTGAGCGT 57.037 42.857 0.00 0.00 0.00 5.07
220 221 4.670221 GCAAAACTTCAGATAGGTTGAGCG 60.670 45.833 0.00 0.00 0.00 5.03
221 222 4.216257 TGCAAAACTTCAGATAGGTTGAGC 59.784 41.667 0.00 0.00 31.23 4.26
222 223 5.471456 ACTGCAAAACTTCAGATAGGTTGAG 59.529 40.000 0.00 0.00 34.57 3.02
223 224 5.376625 ACTGCAAAACTTCAGATAGGTTGA 58.623 37.500 0.00 0.00 34.57 3.18
224 225 5.239306 TGACTGCAAAACTTCAGATAGGTTG 59.761 40.000 0.00 0.00 34.57 3.77
225 226 5.239525 GTGACTGCAAAACTTCAGATAGGTT 59.760 40.000 0.00 0.00 34.57 3.50
226 227 4.757149 GTGACTGCAAAACTTCAGATAGGT 59.243 41.667 0.00 0.00 34.57 3.08
227 228 4.999950 AGTGACTGCAAAACTTCAGATAGG 59.000 41.667 0.00 0.00 34.57 2.57
228 229 5.698089 TCAGTGACTGCAAAACTTCAGATAG 59.302 40.000 7.93 0.00 34.57 2.08
229 230 5.466728 GTCAGTGACTGCAAAACTTCAGATA 59.533 40.000 16.26 0.00 34.57 1.98
230 231 4.274459 GTCAGTGACTGCAAAACTTCAGAT 59.726 41.667 16.26 0.00 34.57 2.90
231 232 3.623060 GTCAGTGACTGCAAAACTTCAGA 59.377 43.478 16.26 0.00 34.57 3.27
232 233 3.544834 CGTCAGTGACTGCAAAACTTCAG 60.545 47.826 20.64 0.00 36.45 3.02
233 234 2.351418 CGTCAGTGACTGCAAAACTTCA 59.649 45.455 20.64 0.00 0.00 3.02
234 235 2.351726 ACGTCAGTGACTGCAAAACTTC 59.648 45.455 20.64 0.00 0.00 3.01
235 236 2.356135 ACGTCAGTGACTGCAAAACTT 58.644 42.857 20.64 0.00 0.00 2.66
236 237 2.024176 ACGTCAGTGACTGCAAAACT 57.976 45.000 20.64 0.00 0.00 2.66
248 249 3.161450 ACAGGCCCACACGTCAGT 61.161 61.111 0.00 0.00 0.00 3.41
249 250 2.666190 CACAGGCCCACACGTCAG 60.666 66.667 0.00 0.00 0.00 3.51
250 251 3.475494 ACACAGGCCCACACGTCA 61.475 61.111 0.00 0.00 0.00 4.35
251 252 2.972505 CACACAGGCCCACACGTC 60.973 66.667 0.00 0.00 0.00 4.34
253 254 4.935495 AGCACACAGGCCCACACG 62.935 66.667 0.00 0.00 0.00 4.49
254 255 2.075426 GAAAGCACACAGGCCCACAC 62.075 60.000 0.00 0.00 0.00 3.82
255 256 1.827789 GAAAGCACACAGGCCCACA 60.828 57.895 0.00 0.00 0.00 4.17
256 257 1.109323 AAGAAAGCACACAGGCCCAC 61.109 55.000 0.00 0.00 0.00 4.61
257 258 0.396974 AAAGAAAGCACACAGGCCCA 60.397 50.000 0.00 0.00 0.00 5.36
258 259 0.752658 AAAAGAAAGCACACAGGCCC 59.247 50.000 0.00 0.00 0.00 5.80
259 260 3.578688 CATAAAAGAAAGCACACAGGCC 58.421 45.455 0.00 0.00 0.00 5.19
260 261 3.578688 CCATAAAAGAAAGCACACAGGC 58.421 45.455 0.00 0.00 0.00 4.85
261 262 3.056607 CCCCATAAAAGAAAGCACACAGG 60.057 47.826 0.00 0.00 0.00 4.00
262 263 3.573967 ACCCCATAAAAGAAAGCACACAG 59.426 43.478 0.00 0.00 0.00 3.66
263 264 3.320541 CACCCCATAAAAGAAAGCACACA 59.679 43.478 0.00 0.00 0.00 3.72
264 265 3.306019 CCACCCCATAAAAGAAAGCACAC 60.306 47.826 0.00 0.00 0.00 3.82
265 266 2.896685 CCACCCCATAAAAGAAAGCACA 59.103 45.455 0.00 0.00 0.00 4.57
266 267 2.233676 CCCACCCCATAAAAGAAAGCAC 59.766 50.000 0.00 0.00 0.00 4.40
267 268 2.534990 CCCACCCCATAAAAGAAAGCA 58.465 47.619 0.00 0.00 0.00 3.91
268 269 1.207089 GCCCACCCCATAAAAGAAAGC 59.793 52.381 0.00 0.00 0.00 3.51
269 270 1.831106 GGCCCACCCCATAAAAGAAAG 59.169 52.381 0.00 0.00 0.00 2.62
270 271 1.435168 AGGCCCACCCCATAAAAGAAA 59.565 47.619 0.00 0.00 36.11 2.52
271 272 1.089123 AGGCCCACCCCATAAAAGAA 58.911 50.000 0.00 0.00 36.11 2.52
272 273 0.334676 CAGGCCCACCCCATAAAAGA 59.665 55.000 0.00 0.00 36.11 2.52
273 274 1.329913 GCAGGCCCACCCCATAAAAG 61.330 60.000 0.00 0.00 36.11 2.27
274 275 1.305718 GCAGGCCCACCCCATAAAA 60.306 57.895 0.00 0.00 36.11 1.52
275 276 2.362565 GCAGGCCCACCCCATAAA 59.637 61.111 0.00 0.00 36.11 1.40
276 277 4.122149 CGCAGGCCCACCCCATAA 62.122 66.667 0.00 0.00 36.11 1.90
292 293 3.296709 AAGTCCACGGCTAGGCACG 62.297 63.158 17.45 6.04 0.00 5.34
293 294 1.741770 CAAGTCCACGGCTAGGCAC 60.742 63.158 17.45 6.75 0.00 5.01
294 295 2.214216 ACAAGTCCACGGCTAGGCA 61.214 57.895 17.45 0.00 0.00 4.75
295 296 1.741770 CACAAGTCCACGGCTAGGC 60.742 63.158 6.15 6.15 0.00 3.93
296 297 1.079127 CCACAAGTCCACGGCTAGG 60.079 63.158 0.00 0.00 0.00 3.02
297 298 1.079127 CCCACAAGTCCACGGCTAG 60.079 63.158 0.00 0.00 0.00 3.42
298 299 2.589157 CCCCACAAGTCCACGGCTA 61.589 63.158 0.00 0.00 0.00 3.93
299 300 3.953775 CCCCACAAGTCCACGGCT 61.954 66.667 0.00 0.00 0.00 5.52
300 301 4.265056 ACCCCACAAGTCCACGGC 62.265 66.667 0.00 0.00 0.00 5.68
301 302 2.032071 GACCCCACAAGTCCACGG 59.968 66.667 0.00 0.00 0.00 4.94
302 303 0.179029 AAAGACCCCACAAGTCCACG 60.179 55.000 0.00 0.00 34.67 4.94
303 304 2.067365 AAAAGACCCCACAAGTCCAC 57.933 50.000 0.00 0.00 34.67 4.02
304 305 4.463050 AATAAAAGACCCCACAAGTCCA 57.537 40.909 0.00 0.00 34.67 4.02
305 306 5.567430 ACTAATAAAAGACCCCACAAGTCC 58.433 41.667 0.00 0.00 34.67 3.85
306 307 7.520451 AAACTAATAAAAGACCCCACAAGTC 57.480 36.000 0.00 0.00 34.31 3.01
307 308 8.000127 TGTAAACTAATAAAAGACCCCACAAGT 59.000 33.333 0.00 0.00 0.00 3.16
308 309 8.398878 TGTAAACTAATAAAAGACCCCACAAG 57.601 34.615 0.00 0.00 0.00 3.16
309 310 8.219178 TCTGTAAACTAATAAAAGACCCCACAA 58.781 33.333 0.00 0.00 0.00 3.33
310 311 7.747690 TCTGTAAACTAATAAAAGACCCCACA 58.252 34.615 0.00 0.00 0.00 4.17
311 312 7.336176 CCTCTGTAAACTAATAAAAGACCCCAC 59.664 40.741 0.00 0.00 0.00 4.61
312 313 7.399634 CCTCTGTAAACTAATAAAAGACCCCA 58.600 38.462 0.00 0.00 0.00 4.96
313 314 6.827251 CCCTCTGTAAACTAATAAAAGACCCC 59.173 42.308 0.00 0.00 0.00 4.95
314 315 7.627311 TCCCTCTGTAAACTAATAAAAGACCC 58.373 38.462 0.00 0.00 0.00 4.46
315 316 8.319881 ACTCCCTCTGTAAACTAATAAAAGACC 58.680 37.037 0.00 0.00 0.00 3.85
322 323 9.317827 ACAAAGTACTCCCTCTGTAAACTAATA 57.682 33.333 0.00 0.00 0.00 0.98
323 324 8.203681 ACAAAGTACTCCCTCTGTAAACTAAT 57.796 34.615 0.00 0.00 0.00 1.73
324 325 7.607615 ACAAAGTACTCCCTCTGTAAACTAA 57.392 36.000 0.00 0.00 0.00 2.24
325 326 7.288389 TCAACAAAGTACTCCCTCTGTAAACTA 59.712 37.037 0.00 0.00 0.00 2.24
326 327 6.099269 TCAACAAAGTACTCCCTCTGTAAACT 59.901 38.462 0.00 0.00 0.00 2.66
327 328 6.285990 TCAACAAAGTACTCCCTCTGTAAAC 58.714 40.000 0.00 0.00 0.00 2.01
328 329 6.488769 TCAACAAAGTACTCCCTCTGTAAA 57.511 37.500 0.00 0.00 0.00 2.01
329 330 6.269077 TCATCAACAAAGTACTCCCTCTGTAA 59.731 38.462 0.00 0.00 0.00 2.41
330 331 5.778241 TCATCAACAAAGTACTCCCTCTGTA 59.222 40.000 0.00 0.00 0.00 2.74
331 332 4.593206 TCATCAACAAAGTACTCCCTCTGT 59.407 41.667 0.00 0.00 0.00 3.41
332 333 5.152623 TCATCAACAAAGTACTCCCTCTG 57.847 43.478 0.00 0.00 0.00 3.35
333 334 6.380079 AATCATCAACAAAGTACTCCCTCT 57.620 37.500 0.00 0.00 0.00 3.69
334 335 6.258947 GCTAATCATCAACAAAGTACTCCCTC 59.741 42.308 0.00 0.00 0.00 4.30
335 336 6.116126 GCTAATCATCAACAAAGTACTCCCT 58.884 40.000 0.00 0.00 0.00 4.20
336 337 5.006746 CGCTAATCATCAACAAAGTACTCCC 59.993 44.000 0.00 0.00 0.00 4.30
337 338 5.810587 TCGCTAATCATCAACAAAGTACTCC 59.189 40.000 0.00 0.00 0.00 3.85
338 339 6.887376 TCGCTAATCATCAACAAAGTACTC 57.113 37.500 0.00 0.00 0.00 2.59
339 340 6.238211 GCATCGCTAATCATCAACAAAGTACT 60.238 38.462 0.00 0.00 0.00 2.73
340 341 5.904080 GCATCGCTAATCATCAACAAAGTAC 59.096 40.000 0.00 0.00 0.00 2.73
341 342 5.007626 GGCATCGCTAATCATCAACAAAGTA 59.992 40.000 0.00 0.00 0.00 2.24
342 343 4.201950 GGCATCGCTAATCATCAACAAAGT 60.202 41.667 0.00 0.00 0.00 2.66
343 344 4.036027 AGGCATCGCTAATCATCAACAAAG 59.964 41.667 0.00 0.00 0.00 2.77
346 347 2.874086 CAGGCATCGCTAATCATCAACA 59.126 45.455 0.00 0.00 0.00 3.33
382 383 7.062839 GCAATGAACAAGAACACAAAACAAGTA 59.937 33.333 0.00 0.00 0.00 2.24
391 392 4.717233 AACTGCAATGAACAAGAACACA 57.283 36.364 0.00 0.00 0.00 3.72
413 414 1.339631 CCCAAGCGGTGAAGGTTATGA 60.340 52.381 0.00 0.00 0.00 2.15
445 446 2.046292 AGCCAGATAGAAAGGAGCTCC 58.954 52.381 26.22 26.22 0.00 4.70
495 496 4.345859 ACTCTATCCACGAAACCAAACA 57.654 40.909 0.00 0.00 0.00 2.83
599 603 5.332581 CCGTGCAAAATCGTATAGATCACAG 60.333 44.000 0.00 0.00 38.98 3.66
609 613 1.222766 ACGCACCGTGCAAAATCGTA 61.223 50.000 22.89 0.00 45.36 3.43
611 615 2.251075 ACGCACCGTGCAAAATCG 59.749 55.556 22.89 8.16 45.36 3.34
657 1233 9.884636 AGAATGTATTTATGTAACTGCAGTGTA 57.115 29.630 22.49 12.01 0.00 2.90
673 1280 6.403636 GCAGTTCAACGATGGAGAATGTATTT 60.404 38.462 0.00 0.00 0.00 1.40
674 1281 5.065218 GCAGTTCAACGATGGAGAATGTATT 59.935 40.000 0.00 0.00 0.00 1.89
675 1282 4.572389 GCAGTTCAACGATGGAGAATGTAT 59.428 41.667 0.00 0.00 0.00 2.29
676 1283 3.932710 GCAGTTCAACGATGGAGAATGTA 59.067 43.478 0.00 0.00 0.00 2.29
677 1284 2.744202 GCAGTTCAACGATGGAGAATGT 59.256 45.455 0.00 0.00 0.00 2.71
678 1285 2.222886 CGCAGTTCAACGATGGAGAATG 60.223 50.000 0.00 0.00 0.00 2.67
679 1286 2.002586 CGCAGTTCAACGATGGAGAAT 58.997 47.619 0.00 0.00 0.00 2.40
680 1287 1.270094 ACGCAGTTCAACGATGGAGAA 60.270 47.619 0.00 0.00 37.78 2.87
681 1288 0.317160 ACGCAGTTCAACGATGGAGA 59.683 50.000 0.00 0.00 37.78 3.71
730 1370 0.244994 CCAGAGTTGTCTAGCGCACT 59.755 55.000 11.47 1.96 0.00 4.40
736 1376 3.322254 ACAAGGACACCAGAGTTGTCTAG 59.678 47.826 2.73 0.00 33.47 2.43
742 1382 1.507140 TGGACAAGGACACCAGAGTT 58.493 50.000 0.00 0.00 0.00 3.01
748 1388 2.613223 GCTAGTTCTGGACAAGGACACC 60.613 54.545 0.00 0.00 36.77 4.16
756 1396 2.232452 GAGAAGCTGCTAGTTCTGGACA 59.768 50.000 0.90 0.00 33.04 4.02
874 1519 1.604378 GTGGGTAGGCTCATGCAGT 59.396 57.895 0.00 0.00 41.91 4.40
938 1585 2.047179 GGTGGCTCGGGTGAGTTC 60.047 66.667 0.00 0.00 44.48 3.01
939 1586 2.847234 TGGTGGCTCGGGTGAGTT 60.847 61.111 0.00 0.00 44.48 3.01
985 1632 1.466856 GCCATCTTTGATCCTGTGCA 58.533 50.000 0.00 0.00 0.00 4.57
996 1647 3.118454 CACGACGCCGCCATCTTT 61.118 61.111 0.00 0.00 39.95 2.52
1137 1788 1.203052 GTCATGTCGTCCCCGTAGAAA 59.797 52.381 0.00 0.00 35.01 2.52
1219 1870 2.741211 GTCGGGCCCGTCAAAGAC 60.741 66.667 41.57 27.98 40.74 3.01
1326 1977 0.596577 CCTTGACCTCGAACTCGTGA 59.403 55.000 2.91 0.00 40.80 4.35
1351 2002 1.893808 CGCCGGGCATAAAGAGCAT 60.894 57.895 20.71 0.00 0.00 3.79
1407 2058 0.947180 TCTTGCCGTACGTCTTTGCC 60.947 55.000 15.21 0.00 0.00 4.52
1410 2061 3.206090 GGTCTTGCCGTACGTCTTT 57.794 52.632 15.21 0.00 0.00 2.52
1524 2175 1.805945 GTGCTTACAGTCGGCGAGG 60.806 63.158 11.20 8.60 0.00 4.63
1576 2249 3.990469 CAGTAAGCCAACACTGACACTAG 59.010 47.826 0.00 0.00 43.99 2.57
1578 2251 2.434336 TCAGTAAGCCAACACTGACACT 59.566 45.455 0.44 0.00 44.70 3.55
1714 2387 4.729918 AAGCCCTTCCCAGCAGCG 62.730 66.667 0.00 0.00 0.00 5.18
1814 2487 1.004595 CATCTCTCGGACACGTACGA 58.995 55.000 24.41 4.16 44.78 3.43
1827 2500 2.433604 CAGCTATCACACACCCATCTCT 59.566 50.000 0.00 0.00 0.00 3.10
1839 2512 4.668636 ACTACCCTATCTCCAGCTATCAC 58.331 47.826 0.00 0.00 0.00 3.06
1908 2587 3.304559 GTCCATCATTCTTCGAACACTCG 59.695 47.826 0.00 0.00 46.87 4.18
1914 2593 3.194755 TCGGAAGTCCATCATTCTTCGAA 59.805 43.478 0.00 0.00 38.58 3.71
1924 2604 4.755411 TGACTGTTATTCGGAAGTCCATC 58.245 43.478 4.76 0.00 38.61 3.51
1925 2605 4.819105 TGACTGTTATTCGGAAGTCCAT 57.181 40.909 4.76 0.00 38.61 3.41
1926 2606 4.819105 ATGACTGTTATTCGGAAGTCCA 57.181 40.909 4.76 0.00 38.61 4.02
1927 2607 5.290386 CCTATGACTGTTATTCGGAAGTCC 58.710 45.833 4.76 0.00 38.61 3.85
1945 2625 2.590007 GCTCCGCCACTGCCTATG 60.590 66.667 0.00 0.00 0.00 2.23
2018 2698 3.995636 AGACTATGGTTTGCCTCCTCTA 58.004 45.455 0.00 0.00 35.27 2.43
2023 2703 5.105310 TCAAGAGTAGACTATGGTTTGCCTC 60.105 44.000 0.00 0.00 35.27 4.70
2024 2704 4.777896 TCAAGAGTAGACTATGGTTTGCCT 59.222 41.667 0.00 0.00 35.27 4.75
2025 2705 5.086104 TCAAGAGTAGACTATGGTTTGCC 57.914 43.478 0.00 0.00 0.00 4.52
2026 2706 5.967088 TCTCAAGAGTAGACTATGGTTTGC 58.033 41.667 0.00 0.00 0.00 3.68
2036 2716 8.303876 AGTGAAGAGAAAATCTCAAGAGTAGAC 58.696 37.037 9.82 0.00 45.73 2.59
2046 2726 7.736447 TCTTTGGAAGTGAAGAGAAAATCTC 57.264 36.000 0.00 0.00 43.70 2.75
2055 2735 7.581213 TTTTAGCAATCTTTGGAAGTGAAGA 57.419 32.000 0.00 0.00 36.43 2.87
2058 2738 7.581213 TCTTTTTAGCAATCTTTGGAAGTGA 57.419 32.000 0.00 0.00 0.00 3.41
2073 2753 5.942872 TGAGTGCTTGCTAATCTTTTTAGC 58.057 37.500 9.79 9.79 45.57 3.09
2074 2754 6.026513 GCTGAGTGCTTGCTAATCTTTTTAG 58.973 40.000 0.00 0.00 38.95 1.85
2076 2756 4.614535 CGCTGAGTGCTTGCTAATCTTTTT 60.615 41.667 0.00 0.00 40.11 1.94
2084 2764 1.531149 GTTTTCGCTGAGTGCTTGCTA 59.469 47.619 0.00 0.00 40.11 3.49
2086 2766 0.029300 TGTTTTCGCTGAGTGCTTGC 59.971 50.000 0.00 0.00 40.11 4.01
2096 2776 4.777140 GAAAGCAAATGTTGTTTTCGCT 57.223 36.364 12.48 0.00 45.96 4.93
2110 2790 6.597672 TCGGCTTCTTAGAAATATGAAAGCAA 59.402 34.615 6.53 0.00 0.00 3.91
2124 2804 7.494625 TCCTGTACATTAATTTCGGCTTCTTAG 59.505 37.037 0.00 0.00 0.00 2.18
2133 2815 3.558418 CGGGGTCCTGTACATTAATTTCG 59.442 47.826 0.00 0.00 0.00 3.46
2138 2820 2.250921 TCCGGGGTCCTGTACATTAA 57.749 50.000 0.00 0.00 0.00 1.40
2143 2825 0.397564 TTGTTTCCGGGGTCCTGTAC 59.602 55.000 0.00 0.00 0.00 2.90
2175 3158 9.243105 AGCAGTATTTGTTGTTTCCATAAGTAT 57.757 29.630 0.00 0.00 0.00 2.12
2205 3188 8.200792 TGTTGTGCAGAAGGTTTATGTATTTTT 58.799 29.630 0.00 0.00 0.00 1.94
2207 3190 7.283625 TGTTGTGCAGAAGGTTTATGTATTT 57.716 32.000 0.00 0.00 0.00 1.40
2210 3193 6.892658 ATTGTTGTGCAGAAGGTTTATGTA 57.107 33.333 0.00 0.00 0.00 2.29
2212 3195 6.913170 AGTATTGTTGTGCAGAAGGTTTATG 58.087 36.000 0.00 0.00 0.00 1.90
2213 3196 7.883311 AGTAGTATTGTTGTGCAGAAGGTTTAT 59.117 33.333 0.00 0.00 0.00 1.40
2214 3197 7.172532 CAGTAGTATTGTTGTGCAGAAGGTTTA 59.827 37.037 0.00 0.00 0.00 2.01
2216 3199 5.470098 CAGTAGTATTGTTGTGCAGAAGGTT 59.530 40.000 0.00 0.00 0.00 3.50
2217 3200 4.997395 CAGTAGTATTGTTGTGCAGAAGGT 59.003 41.667 0.00 0.00 0.00 3.50
2219 3202 6.974932 ATCAGTAGTATTGTTGTGCAGAAG 57.025 37.500 0.00 0.00 0.00 2.85
2222 3435 7.595311 TGTTATCAGTAGTATTGTTGTGCAG 57.405 36.000 0.00 0.00 0.00 4.41
2242 3455 7.027760 TGTGCAAAACGTTTCTGTATTTGTTA 58.972 30.769 15.01 0.00 34.37 2.41
2245 3458 5.940603 TGTGCAAAACGTTTCTGTATTTG 57.059 34.783 15.01 8.08 34.84 2.32
2258 3471 4.894798 TTCGTTTCACTTTGTGCAAAAC 57.105 36.364 0.00 0.00 32.98 2.43
2261 3474 5.065346 TCTGTATTCGTTTCACTTTGTGCAA 59.935 36.000 0.00 0.00 32.98 4.08
2263 3476 5.090652 TCTGTATTCGTTTCACTTTGTGC 57.909 39.130 0.00 0.00 32.98 4.57
2296 3509 5.303589 TCCTCCGGTAGTAATTCTGTATTGG 59.696 44.000 0.00 0.00 0.00 3.16
2302 3515 5.935789 TGTTTTTCCTCCGGTAGTAATTCTG 59.064 40.000 0.00 0.00 0.00 3.02
2304 3517 6.806388 TTGTTTTTCCTCCGGTAGTAATTC 57.194 37.500 0.00 0.00 0.00 2.17
2312 3525 4.271661 TGTAACTTTGTTTTTCCTCCGGT 58.728 39.130 0.00 0.00 0.00 5.28
2343 3790 6.470877 TGTCGTATTTGCTTTGTTTTCTTCAC 59.529 34.615 0.00 0.00 0.00 3.18
2344 3791 6.556212 TGTCGTATTTGCTTTGTTTTCTTCA 58.444 32.000 0.00 0.00 0.00 3.02
2425 3911 5.503846 GCCATGGTTTTGTGTTCATTGTTTC 60.504 40.000 14.67 0.00 0.00 2.78
2477 3964 9.331282 GGTTTGAGCTAACACTATTATGATTCT 57.669 33.333 1.96 0.00 0.00 2.40
2478 3965 8.276325 CGGTTTGAGCTAACACTATTATGATTC 58.724 37.037 1.96 0.00 0.00 2.52
2479 3966 7.769044 ACGGTTTGAGCTAACACTATTATGATT 59.231 33.333 1.96 0.00 0.00 2.57
2480 3967 7.272978 ACGGTTTGAGCTAACACTATTATGAT 58.727 34.615 1.96 0.00 0.00 2.45
2481 3968 6.636705 ACGGTTTGAGCTAACACTATTATGA 58.363 36.000 1.96 0.00 0.00 2.15
2482 3969 6.903883 ACGGTTTGAGCTAACACTATTATG 57.096 37.500 1.96 0.00 0.00 1.90
2483 3970 9.609346 ATTTACGGTTTGAGCTAACACTATTAT 57.391 29.630 1.96 0.00 0.00 1.28
2485 3972 7.916914 ATTTACGGTTTGAGCTAACACTATT 57.083 32.000 1.96 0.00 0.00 1.73
2486 3973 8.255905 AGTATTTACGGTTTGAGCTAACACTAT 58.744 33.333 1.96 0.00 0.00 2.12
2487 3974 7.543172 CAGTATTTACGGTTTGAGCTAACACTA 59.457 37.037 1.96 0.00 0.00 2.74
2496 3983 4.330074 CCTGAGCAGTATTTACGGTTTGAG 59.670 45.833 0.00 0.00 0.00 3.02
2502 3989 2.550978 CCACCTGAGCAGTATTTACGG 58.449 52.381 0.00 0.00 0.00 4.02
2511 3998 2.050350 CCCATTGCCACCTGAGCAG 61.050 63.158 0.00 0.00 42.17 4.24
2522 4009 1.039233 ACTACATGCTGGCCCATTGC 61.039 55.000 0.00 0.00 40.16 3.56
2524 4011 1.846439 ACTACTACATGCTGGCCCATT 59.154 47.619 0.00 0.00 0.00 3.16
2540 4057 3.146847 GGCCCATATGTTAGCCAACTAC 58.853 50.000 18.78 0.00 45.07 2.73
2563 4080 1.873698 TTAACACGTGGCACTCCTTC 58.126 50.000 21.57 0.00 0.00 3.46
2566 4083 1.196808 CACATTAACACGTGGCACTCC 59.803 52.381 21.57 0.00 0.00 3.85
2567 4084 1.196808 CCACATTAACACGTGGCACTC 59.803 52.381 21.57 0.00 45.77 3.51
2573 4090 0.878416 CACCCCCACATTAACACGTG 59.122 55.000 15.48 15.48 0.00 4.49
2574 4091 0.250989 CCACCCCCACATTAACACGT 60.251 55.000 0.00 0.00 0.00 4.49
2575 4092 0.037017 TCCACCCCCACATTAACACG 59.963 55.000 0.00 0.00 0.00 4.49
2576 4093 1.615919 CCTCCACCCCCACATTAACAC 60.616 57.143 0.00 0.00 0.00 3.32
2577 4094 0.701731 CCTCCACCCCCACATTAACA 59.298 55.000 0.00 0.00 0.00 2.41
2578 4095 0.996583 TCCTCCACCCCCACATTAAC 59.003 55.000 0.00 0.00 0.00 2.01
2579 4096 1.203505 TCTCCTCCACCCCCACATTAA 60.204 52.381 0.00 0.00 0.00 1.40
2580 4097 0.419865 TCTCCTCCACCCCCACATTA 59.580 55.000 0.00 0.00 0.00 1.90
2581 4098 0.916358 CTCTCCTCCACCCCCACATT 60.916 60.000 0.00 0.00 0.00 2.71
2582 4099 1.307343 CTCTCCTCCACCCCCACAT 60.307 63.158 0.00 0.00 0.00 3.21
2583 4100 2.122729 CTCTCCTCCACCCCCACA 59.877 66.667 0.00 0.00 0.00 4.17
2584 4101 1.687493 CTCTCTCCTCCACCCCCAC 60.687 68.421 0.00 0.00 0.00 4.61
2585 4102 1.452226 TTCTCTCTCCTCCACCCCCA 61.452 60.000 0.00 0.00 0.00 4.96
2586 4103 0.252742 TTTCTCTCTCCTCCACCCCC 60.253 60.000 0.00 0.00 0.00 5.40
2587 4104 1.765904 GATTTCTCTCTCCTCCACCCC 59.234 57.143 0.00 0.00 0.00 4.95
2588 4105 2.472029 TGATTTCTCTCTCCTCCACCC 58.528 52.381 0.00 0.00 0.00 4.61
2589 4106 4.898861 ACTATGATTTCTCTCTCCTCCACC 59.101 45.833 0.00 0.00 0.00 4.61
2590 4107 6.478512 AACTATGATTTCTCTCTCCTCCAC 57.521 41.667 0.00 0.00 0.00 4.02
2591 4108 8.789767 AATAACTATGATTTCTCTCTCCTCCA 57.210 34.615 0.00 0.00 0.00 3.86
2618 4135 9.719355 TGTGCTAAGAAATCAACTCTTACATAA 57.281 29.630 0.00 0.00 34.90 1.90
2619 4136 9.719355 TTGTGCTAAGAAATCAACTCTTACATA 57.281 29.630 0.00 0.00 34.90 2.29
2620 4137 8.621532 TTGTGCTAAGAAATCAACTCTTACAT 57.378 30.769 0.00 0.00 34.90 2.29
2621 4138 8.445275 TTTGTGCTAAGAAATCAACTCTTACA 57.555 30.769 0.00 0.00 34.90 2.41
2626 4143 9.495754 GACATATTTGTGCTAAGAAATCAACTC 57.504 33.333 0.00 0.00 35.79 3.01
2636 4153 5.120053 TGTGACGTGACATATTTGTGCTAAG 59.880 40.000 2.90 0.00 35.79 2.18
2639 4156 3.398406 TGTGACGTGACATATTTGTGCT 58.602 40.909 2.90 0.00 35.79 4.40
2641 4158 7.481483 CCTAAATTGTGACGTGACATATTTGTG 59.519 37.037 23.98 18.92 35.79 3.33
2643 4160 6.966632 CCCTAAATTGTGACGTGACATATTTG 59.033 38.462 23.98 16.54 0.00 2.32
2644 4161 6.882140 TCCCTAAATTGTGACGTGACATATTT 59.118 34.615 21.49 21.49 0.00 1.40
2655 4172 6.759497 AACTAGCAATCCCTAAATTGTGAC 57.241 37.500 0.00 0.00 38.60 3.67
2661 4178 9.920946 TCTTTCAATAACTAGCAATCCCTAAAT 57.079 29.630 0.00 0.00 0.00 1.40
2701 4219 8.154649 ACGGGAATTTGTTAGCTATATCTTTG 57.845 34.615 0.00 0.00 0.00 2.77
2709 4227 7.542824 GCATTAAAAACGGGAATTTGTTAGCTA 59.457 33.333 0.00 0.00 0.00 3.32
2711 4229 6.146347 TGCATTAAAAACGGGAATTTGTTAGC 59.854 34.615 0.00 0.00 0.00 3.09
2721 4239 9.495572 AATTTAAAGATTGCATTAAAAACGGGA 57.504 25.926 6.97 0.00 35.36 5.14
2728 4246 9.411801 TGCGTGTAATTTAAAGATTGCATTAAA 57.588 25.926 5.65 5.65 34.82 1.52
2729 4247 8.972262 TGCGTGTAATTTAAAGATTGCATTAA 57.028 26.923 0.00 0.00 34.82 1.40
2730 4248 8.972262 TTGCGTGTAATTTAAAGATTGCATTA 57.028 26.923 0.00 0.00 34.82 1.90
2731 4249 7.881643 TTGCGTGTAATTTAAAGATTGCATT 57.118 28.000 0.00 0.00 34.82 3.56
2732 4250 7.881643 TTTGCGTGTAATTTAAAGATTGCAT 57.118 28.000 0.00 0.00 34.82 3.96
2733 4251 7.436673 AGTTTTGCGTGTAATTTAAAGATTGCA 59.563 29.630 0.00 0.00 30.70 4.08
2734 4252 7.783209 AGTTTTGCGTGTAATTTAAAGATTGC 58.217 30.769 0.00 0.00 0.00 3.56


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.