Multiple sequence alignment - TraesCS5A01G242600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G242600 chr5A 100.000 3114 0 0 1 3114 457721243 457718130 0.000000e+00 5751.0
1 TraesCS5A01G242600 chr5A 92.617 298 21 1 2 298 690316135 690316432 7.980000e-116 427.0
2 TraesCS5A01G242600 chr5A 76.341 410 78 14 2626 3032 457086812 457086419 5.270000e-48 202.0
3 TraesCS5A01G242600 chr5B 95.730 2248 85 7 869 3114 420179964 420182202 0.000000e+00 3609.0
4 TraesCS5A01G242600 chr5B 76.722 421 76 17 2616 3033 420732467 420732868 6.760000e-52 215.0
5 TraesCS5A01G242600 chr5B 75.735 408 84 10 2626 3032 419727975 419727582 1.140000e-44 191.0
6 TraesCS5A01G242600 chr5B 93.750 48 1 1 827 872 420179563 420179610 1.550000e-08 71.3
7 TraesCS5A01G242600 chr5D 94.382 1246 60 5 825 2064 355455508 355456749 0.000000e+00 1905.0
8 TraesCS5A01G242600 chr5D 95.189 1060 46 4 2055 3112 355460883 355461939 0.000000e+00 1670.0
9 TraesCS5A01G242600 chr5D 90.693 462 37 3 286 747 100552977 100553432 7.380000e-171 610.0
10 TraesCS5A01G242600 chr5D 87.446 462 51 4 286 747 44160484 44160938 2.750000e-145 525.0
11 TraesCS5A01G242600 chr5D 94.444 288 16 0 1 288 100552656 100552943 7.920000e-121 444.0
12 TraesCS5A01G242600 chr5D 93.793 290 16 2 1 289 296997246 296996958 4.770000e-118 435.0
13 TraesCS5A01G242600 chr5D 76.559 401 73 15 2616 3013 355797310 355797692 1.890000e-47 200.0
14 TraesCS5A01G242600 chr2D 84.340 977 144 6 1038 2008 496356224 496355251 0.000000e+00 948.0
15 TraesCS5A01G242600 chr2D 82.649 974 153 13 1080 2044 496352523 496351557 0.000000e+00 848.0
16 TraesCS5A01G242600 chr2D 89.032 465 51 0 286 750 627585244 627584780 7.490000e-161 577.0
17 TraesCS5A01G242600 chr2B 83.137 1020 161 9 1032 2044 583530237 583529222 0.000000e+00 920.0
18 TraesCS5A01G242600 chr2B 81.379 1015 177 7 1032 2038 583525314 583524304 0.000000e+00 817.0
19 TraesCS5A01G242600 chr4A 82.708 960 148 5 1048 2001 460459818 460460765 0.000000e+00 837.0
20 TraesCS5A01G242600 chr4D 82.083 960 154 7 1048 2001 116132235 116131288 0.000000e+00 804.0
21 TraesCS5A01G242600 chr4D 88.961 462 37 9 286 745 22228577 22228128 2.710000e-155 558.0
22 TraesCS5A01G242600 chr4D 93.772 289 18 0 1 289 22228898 22228610 4.770000e-118 435.0
23 TraesCS5A01G242600 chr4B 81.062 998 161 13 1048 2034 177224233 177223253 0.000000e+00 771.0
24 TraesCS5A01G242600 chr4B 88.095 462 49 3 286 747 427323960 427323505 7.600000e-151 544.0
25 TraesCS5A01G242600 chr6A 80.521 960 154 19 2170 3105 16443436 16444386 0.000000e+00 706.0
26 TraesCS5A01G242600 chr6A 87.069 464 51 5 286 749 167669570 167670024 1.660000e-142 516.0
27 TraesCS5A01G242600 chr6B 80.905 906 144 14 2228 3114 28064334 28063439 0.000000e+00 688.0
28 TraesCS5A01G242600 chr6B 80.730 877 139 17 2228 3084 27903141 27904007 0.000000e+00 656.0
29 TraesCS5A01G242600 chr3A 88.147 464 51 3 286 747 505721728 505721267 1.630000e-152 549.0
30 TraesCS5A01G242600 chr1D 88.312 462 45 3 286 747 278526428 278526880 2.110000e-151 545.0
31 TraesCS5A01G242600 chr1D 93.772 289 17 1 1 289 231456623 231456910 1.720000e-117 433.0
32 TraesCS5A01G242600 chr6D 87.716 464 54 2 286 749 431853478 431853018 3.530000e-149 538.0
33 TraesCS5A01G242600 chr2A 79.462 706 136 6 1346 2044 641481373 641480670 2.790000e-135 492.0
34 TraesCS5A01G242600 chr7D 95.070 284 13 1 6 289 593671138 593671420 2.200000e-121 446.0
35 TraesCS5A01G242600 chr7D 75.312 320 47 25 2719 3033 125888204 125887912 1.170000e-24 124.0
36 TraesCS5A01G242600 chr3D 94.118 289 17 0 1 289 140787328 140787616 1.030000e-119 440.0
37 TraesCS5A01G242600 chr3D 93.772 289 18 0 1 289 415645529 415645241 4.770000e-118 435.0
38 TraesCS5A01G242600 chrUn 93.772 289 18 0 1 289 21561540 21561828 4.770000e-118 435.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G242600 chr5A 457718130 457721243 3113 True 5751.00 5751 100.0000 1 3114 1 chr5A.!!$R2 3113
1 TraesCS5A01G242600 chr5B 420179563 420182202 2639 False 1840.15 3609 94.7400 827 3114 2 chr5B.!!$F2 2287
2 TraesCS5A01G242600 chr5D 355455508 355456749 1241 False 1905.00 1905 94.3820 825 2064 1 chr5D.!!$F2 1239
3 TraesCS5A01G242600 chr5D 355460883 355461939 1056 False 1670.00 1670 95.1890 2055 3112 1 chr5D.!!$F3 1057
4 TraesCS5A01G242600 chr5D 100552656 100553432 776 False 527.00 610 92.5685 1 747 2 chr5D.!!$F5 746
5 TraesCS5A01G242600 chr2D 496351557 496356224 4667 True 898.00 948 83.4945 1038 2044 2 chr2D.!!$R2 1006
6 TraesCS5A01G242600 chr2B 583524304 583530237 5933 True 868.50 920 82.2580 1032 2044 2 chr2B.!!$R1 1012
7 TraesCS5A01G242600 chr4A 460459818 460460765 947 False 837.00 837 82.7080 1048 2001 1 chr4A.!!$F1 953
8 TraesCS5A01G242600 chr4D 116131288 116132235 947 True 804.00 804 82.0830 1048 2001 1 chr4D.!!$R1 953
9 TraesCS5A01G242600 chr4D 22228128 22228898 770 True 496.50 558 91.3665 1 745 2 chr4D.!!$R2 744
10 TraesCS5A01G242600 chr4B 177223253 177224233 980 True 771.00 771 81.0620 1048 2034 1 chr4B.!!$R1 986
11 TraesCS5A01G242600 chr6A 16443436 16444386 950 False 706.00 706 80.5210 2170 3105 1 chr6A.!!$F1 935
12 TraesCS5A01G242600 chr6B 28063439 28064334 895 True 688.00 688 80.9050 2228 3114 1 chr6B.!!$R1 886
13 TraesCS5A01G242600 chr6B 27903141 27904007 866 False 656.00 656 80.7300 2228 3084 1 chr6B.!!$F1 856
14 TraesCS5A01G242600 chr2A 641480670 641481373 703 True 492.00 492 79.4620 1346 2044 1 chr2A.!!$R1 698

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
653 654 0.026803 GACGAAAGCGGACATGCATC 59.973 55.0 0.0 0.0 43.17 3.91 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2219 9580 0.678048 AGCAAGCCGGAGTTTGATCC 60.678 55.0 5.05 0.0 36.37 3.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
180 181 1.228552 GAAGCCATGGTGGTGTGGT 60.229 57.895 14.67 0.00 40.46 4.16
186 187 1.074775 ATGGTGGTGTGGTGCGAAT 59.925 52.632 0.00 0.00 0.00 3.34
213 214 0.101399 GCAGGACATCGTCGATGAGT 59.899 55.000 35.44 18.50 42.09 3.41
218 219 0.458543 ACATCGTCGATGAGTGCCAC 60.459 55.000 35.44 0.00 42.09 5.01
259 260 2.754658 GAGGGACGCGAGGAGGAA 60.755 66.667 15.93 0.00 0.00 3.36
260 261 2.756283 AGGGACGCGAGGAGGAAG 60.756 66.667 15.93 0.00 0.00 3.46
261 262 3.839432 GGGACGCGAGGAGGAAGG 61.839 72.222 15.93 0.00 0.00 3.46
262 263 2.754658 GGACGCGAGGAGGAAGGA 60.755 66.667 15.93 0.00 0.00 3.36
263 264 2.776913 GGACGCGAGGAGGAAGGAG 61.777 68.421 15.93 0.00 0.00 3.69
264 265 3.418744 GACGCGAGGAGGAAGGAGC 62.419 68.421 15.93 0.00 0.00 4.70
265 266 3.452786 CGCGAGGAGGAAGGAGCA 61.453 66.667 0.00 0.00 0.00 4.26
266 267 2.982130 GCGAGGAGGAAGGAGCAA 59.018 61.111 0.00 0.00 0.00 3.91
267 268 1.153469 GCGAGGAGGAAGGAGCAAG 60.153 63.158 0.00 0.00 0.00 4.01
268 269 1.153469 CGAGGAGGAAGGAGCAAGC 60.153 63.158 0.00 0.00 0.00 4.01
269 270 1.223211 GAGGAGGAAGGAGCAAGCC 59.777 63.158 0.00 0.00 0.00 4.35
270 271 2.124942 GGAGGAAGGAGCAAGCCG 60.125 66.667 0.00 0.00 0.00 5.52
271 272 2.821810 GAGGAAGGAGCAAGCCGC 60.822 66.667 0.00 0.00 42.91 6.53
272 273 4.416738 AGGAAGGAGCAAGCCGCC 62.417 66.667 0.00 0.00 44.04 6.13
273 274 4.416738 GGAAGGAGCAAGCCGCCT 62.417 66.667 0.00 0.00 46.69 5.52
274 275 2.584608 GAAGGAGCAAGCCGCCTA 59.415 61.111 4.74 0.00 43.61 3.93
275 276 1.147153 GAAGGAGCAAGCCGCCTAT 59.853 57.895 4.74 0.00 43.61 2.57
276 277 0.393077 GAAGGAGCAAGCCGCCTATA 59.607 55.000 4.74 0.00 43.61 1.31
277 278 0.394565 AAGGAGCAAGCCGCCTATAG 59.605 55.000 4.74 0.00 43.61 1.31
278 279 1.004440 GGAGCAAGCCGCCTATAGG 60.004 63.158 15.01 15.01 44.04 2.57
279 280 1.004440 GAGCAAGCCGCCTATAGGG 60.004 63.158 20.58 10.20 44.04 3.53
280 281 1.459539 AGCAAGCCGCCTATAGGGA 60.460 57.895 20.58 0.00 44.04 4.20
281 282 1.004440 GCAAGCCGCCTATAGGGAG 60.004 63.158 20.58 3.25 37.23 4.30
288 289 0.318762 CGCCTATAGGGAGGACAAGC 59.681 60.000 20.58 1.57 39.15 4.01
289 290 1.723288 GCCTATAGGGAGGACAAGCT 58.277 55.000 20.58 0.00 39.15 3.74
290 291 2.818216 CGCCTATAGGGAGGACAAGCTA 60.818 54.545 20.58 0.00 39.15 3.32
291 292 2.563620 GCCTATAGGGAGGACAAGCTAC 59.436 54.545 20.58 0.00 39.15 3.58
292 293 2.820787 CCTATAGGGAGGACAAGCTACG 59.179 54.545 11.33 0.00 39.15 3.51
293 294 2.750141 ATAGGGAGGACAAGCTACGA 57.250 50.000 0.00 0.00 0.00 3.43
294 295 2.054232 TAGGGAGGACAAGCTACGAG 57.946 55.000 0.00 0.00 0.00 4.18
295 296 0.331954 AGGGAGGACAAGCTACGAGA 59.668 55.000 0.00 0.00 0.00 4.04
296 297 1.183549 GGGAGGACAAGCTACGAGAA 58.816 55.000 0.00 0.00 0.00 2.87
297 298 1.549170 GGGAGGACAAGCTACGAGAAA 59.451 52.381 0.00 0.00 0.00 2.52
298 299 2.608268 GGAGGACAAGCTACGAGAAAC 58.392 52.381 0.00 0.00 0.00 2.78
308 309 4.639824 CGAGAAACGTCGGGTTGA 57.360 55.556 0.00 0.00 39.30 3.18
309 310 2.431539 CGAGAAACGTCGGGTTGAG 58.568 57.895 0.00 0.00 39.30 3.02
310 311 0.039798 CGAGAAACGTCGGGTTGAGA 60.040 55.000 0.00 0.00 39.30 3.27
311 312 1.416373 GAGAAACGTCGGGTTGAGAC 58.584 55.000 0.00 0.00 39.30 3.36
312 313 1.000496 GAGAAACGTCGGGTTGAGACT 60.000 52.381 0.00 0.00 39.30 3.24
313 314 1.411612 AGAAACGTCGGGTTGAGACTT 59.588 47.619 0.00 0.00 39.30 3.01
314 315 2.159000 AGAAACGTCGGGTTGAGACTTT 60.159 45.455 0.00 0.00 39.30 2.66
315 316 1.578583 AACGTCGGGTTGAGACTTTG 58.421 50.000 0.00 0.00 37.50 2.77
316 317 0.748450 ACGTCGGGTTGAGACTTTGA 59.252 50.000 0.00 0.00 36.53 2.69
317 318 1.137479 ACGTCGGGTTGAGACTTTGAA 59.863 47.619 0.00 0.00 36.53 2.69
318 319 1.792949 CGTCGGGTTGAGACTTTGAAG 59.207 52.381 0.00 0.00 36.53 3.02
319 320 2.545113 CGTCGGGTTGAGACTTTGAAGA 60.545 50.000 0.00 0.00 36.53 2.87
320 321 2.801111 GTCGGGTTGAGACTTTGAAGAC 59.199 50.000 0.00 0.00 35.84 3.01
321 322 1.792949 CGGGTTGAGACTTTGAAGACG 59.207 52.381 0.00 0.00 0.00 4.18
322 323 2.545113 CGGGTTGAGACTTTGAAGACGA 60.545 50.000 0.00 0.00 0.00 4.20
323 324 3.060602 GGGTTGAGACTTTGAAGACGAG 58.939 50.000 0.00 0.00 0.00 4.18
324 325 2.476997 GGTTGAGACTTTGAAGACGAGC 59.523 50.000 0.00 0.00 0.00 5.03
325 326 3.123804 GTTGAGACTTTGAAGACGAGCA 58.876 45.455 0.00 0.00 0.00 4.26
326 327 3.018598 TGAGACTTTGAAGACGAGCAG 57.981 47.619 0.00 0.00 0.00 4.24
327 328 2.362397 TGAGACTTTGAAGACGAGCAGT 59.638 45.455 0.00 0.00 0.00 4.40
328 329 3.568430 TGAGACTTTGAAGACGAGCAGTA 59.432 43.478 0.00 0.00 0.00 2.74
329 330 4.218635 TGAGACTTTGAAGACGAGCAGTAT 59.781 41.667 0.00 0.00 0.00 2.12
330 331 4.489810 AGACTTTGAAGACGAGCAGTATG 58.510 43.478 0.00 0.00 40.87 2.39
343 344 2.515926 CAGTATGCTGACGCCTACAT 57.484 50.000 4.57 0.00 45.28 2.29
344 345 2.826428 CAGTATGCTGACGCCTACATT 58.174 47.619 4.57 0.00 45.28 2.71
345 346 2.797156 CAGTATGCTGACGCCTACATTC 59.203 50.000 4.57 0.00 45.28 2.67
346 347 2.430694 AGTATGCTGACGCCTACATTCA 59.569 45.455 0.00 0.00 39.01 2.57
347 348 1.945387 ATGCTGACGCCTACATTCAG 58.055 50.000 0.00 0.00 39.89 3.02
348 349 0.894835 TGCTGACGCCTACATTCAGA 59.105 50.000 2.02 0.00 39.36 3.27
349 350 1.281899 GCTGACGCCTACATTCAGAC 58.718 55.000 2.02 0.00 39.36 3.51
350 351 1.550065 CTGACGCCTACATTCAGACG 58.450 55.000 0.00 0.00 39.36 4.18
351 352 0.885879 TGACGCCTACATTCAGACGT 59.114 50.000 0.00 0.00 36.30 4.34
352 353 1.546834 GACGCCTACATTCAGACGTC 58.453 55.000 7.70 7.70 42.36 4.34
353 354 0.179171 ACGCCTACATTCAGACGTCG 60.179 55.000 10.46 5.48 0.00 5.12
354 355 0.866061 CGCCTACATTCAGACGTCGG 60.866 60.000 10.46 10.03 0.00 4.79
355 356 0.454600 GCCTACATTCAGACGTCGGA 59.545 55.000 14.65 14.65 0.00 4.55
356 357 1.534175 GCCTACATTCAGACGTCGGAG 60.534 57.143 17.70 10.45 0.00 4.63
357 358 1.065701 CCTACATTCAGACGTCGGAGG 59.934 57.143 17.70 15.92 0.00 4.30
358 359 2.014857 CTACATTCAGACGTCGGAGGA 58.985 52.381 17.70 5.55 0.00 3.71
359 360 0.811915 ACATTCAGACGTCGGAGGAG 59.188 55.000 17.70 13.69 0.00 3.69
360 361 0.101399 CATTCAGACGTCGGAGGAGG 59.899 60.000 17.70 3.24 0.00 4.30
361 362 0.034380 ATTCAGACGTCGGAGGAGGA 60.034 55.000 17.70 4.08 0.00 3.71
362 363 0.959372 TTCAGACGTCGGAGGAGGAC 60.959 60.000 17.70 0.00 0.00 3.85
363 364 1.674651 CAGACGTCGGAGGAGGACA 60.675 63.158 10.41 0.00 34.04 4.02
364 365 1.032657 CAGACGTCGGAGGAGGACAT 61.033 60.000 10.41 0.00 34.04 3.06
365 366 0.323542 AGACGTCGGAGGAGGACATT 60.324 55.000 10.46 0.00 34.04 2.71
366 367 1.064906 AGACGTCGGAGGAGGACATTA 60.065 52.381 10.46 0.00 34.04 1.90
367 368 1.065251 GACGTCGGAGGAGGACATTAC 59.935 57.143 0.00 0.00 34.04 1.89
368 369 0.384669 CGTCGGAGGAGGACATTACC 59.615 60.000 0.00 0.00 34.04 2.85
369 370 0.384669 GTCGGAGGAGGACATTACCG 59.615 60.000 0.00 0.00 41.39 4.02
370 371 0.256752 TCGGAGGAGGACATTACCGA 59.743 55.000 0.00 0.00 45.36 4.69
371 372 0.669077 CGGAGGAGGACATTACCGAG 59.331 60.000 0.00 0.00 42.40 4.63
372 373 1.777941 GGAGGAGGACATTACCGAGT 58.222 55.000 0.00 0.00 34.73 4.18
373 374 1.682323 GGAGGAGGACATTACCGAGTC 59.318 57.143 0.00 0.00 34.73 3.36
374 375 1.334243 GAGGAGGACATTACCGAGTCG 59.666 57.143 5.29 5.29 35.63 4.18
385 386 4.767633 CGAGTCGGAGTCGGAAAG 57.232 61.111 23.96 0.00 37.40 2.62
386 387 1.514443 CGAGTCGGAGTCGGAAAGC 60.514 63.158 23.96 0.00 37.40 3.51
387 388 1.514443 GAGTCGGAGTCGGAAAGCG 60.514 63.158 1.41 0.00 36.95 4.68
388 389 1.919956 GAGTCGGAGTCGGAAAGCGA 61.920 60.000 1.41 0.00 36.95 4.93
389 390 1.800713 GTCGGAGTCGGAAAGCGAC 60.801 63.158 1.41 0.00 36.95 5.19
390 391 2.874780 CGGAGTCGGAAAGCGACG 60.875 66.667 0.00 0.00 40.84 5.12
391 392 2.564975 GGAGTCGGAAAGCGACGA 59.435 61.111 0.00 0.00 40.84 4.20
392 393 1.514443 GGAGTCGGAAAGCGACGAG 60.514 63.158 0.00 0.00 40.09 4.18
393 394 1.209640 GAGTCGGAAAGCGACGAGT 59.790 57.895 0.00 0.00 44.61 4.18
394 395 0.445436 GAGTCGGAAAGCGACGAGTA 59.555 55.000 0.00 0.00 42.27 2.59
395 396 0.447011 AGTCGGAAAGCGACGAGTAG 59.553 55.000 0.00 0.00 40.62 2.57
396 397 0.167689 GTCGGAAAGCGACGAGTAGT 59.832 55.000 0.00 0.00 40.09 2.73
397 398 0.877071 TCGGAAAGCGACGAGTAGTT 59.123 50.000 0.00 0.00 34.67 2.24
398 399 0.982673 CGGAAAGCGACGAGTAGTTG 59.017 55.000 0.00 0.00 37.30 3.16
399 400 1.347320 GGAAAGCGACGAGTAGTTGG 58.653 55.000 0.00 0.00 34.75 3.77
400 401 1.336609 GGAAAGCGACGAGTAGTTGGT 60.337 52.381 0.00 0.00 46.24 3.67
401 402 1.984297 GAAAGCGACGAGTAGTTGGTC 59.016 52.381 0.00 0.00 43.70 4.02
402 403 1.245732 AAGCGACGAGTAGTTGGTCT 58.754 50.000 0.00 0.00 43.70 3.85
403 404 1.245732 AGCGACGAGTAGTTGGTCTT 58.754 50.000 0.00 0.00 40.77 3.01
404 405 1.612463 AGCGACGAGTAGTTGGTCTTT 59.388 47.619 0.00 0.00 40.77 2.52
405 406 2.035576 AGCGACGAGTAGTTGGTCTTTT 59.964 45.455 0.00 0.00 40.77 2.27
406 407 2.407696 GCGACGAGTAGTTGGTCTTTTC 59.592 50.000 0.00 0.00 32.84 2.29
407 408 3.856267 GCGACGAGTAGTTGGTCTTTTCT 60.856 47.826 0.00 0.00 32.84 2.52
408 409 4.296690 CGACGAGTAGTTGGTCTTTTCTT 58.703 43.478 0.00 0.00 32.84 2.52
409 410 4.743644 CGACGAGTAGTTGGTCTTTTCTTT 59.256 41.667 0.00 0.00 32.84 2.52
410 411 5.233689 CGACGAGTAGTTGGTCTTTTCTTTT 59.766 40.000 0.00 0.00 32.84 2.27
411 412 6.418819 CGACGAGTAGTTGGTCTTTTCTTTTA 59.581 38.462 0.00 0.00 32.84 1.52
412 413 7.115947 CGACGAGTAGTTGGTCTTTTCTTTTAT 59.884 37.037 0.00 0.00 32.84 1.40
413 414 8.307921 ACGAGTAGTTGGTCTTTTCTTTTATC 57.692 34.615 0.00 0.00 0.00 1.75
414 415 8.148999 ACGAGTAGTTGGTCTTTTCTTTTATCT 58.851 33.333 0.00 0.00 0.00 1.98
415 416 8.436200 CGAGTAGTTGGTCTTTTCTTTTATCTG 58.564 37.037 0.00 0.00 0.00 2.90
416 417 9.274206 GAGTAGTTGGTCTTTTCTTTTATCTGT 57.726 33.333 0.00 0.00 0.00 3.41
417 418 9.057089 AGTAGTTGGTCTTTTCTTTTATCTGTG 57.943 33.333 0.00 0.00 0.00 3.66
418 419 7.881775 AGTTGGTCTTTTCTTTTATCTGTGT 57.118 32.000 0.00 0.00 0.00 3.72
419 420 8.974060 AGTTGGTCTTTTCTTTTATCTGTGTA 57.026 30.769 0.00 0.00 0.00 2.90
420 421 8.837389 AGTTGGTCTTTTCTTTTATCTGTGTAC 58.163 33.333 0.00 0.00 0.00 2.90
421 422 7.416154 TGGTCTTTTCTTTTATCTGTGTACG 57.584 36.000 0.00 0.00 0.00 3.67
422 423 6.073440 TGGTCTTTTCTTTTATCTGTGTACGC 60.073 38.462 0.00 0.00 0.00 4.42
423 424 6.147328 GGTCTTTTCTTTTATCTGTGTACGCT 59.853 38.462 8.10 0.00 0.00 5.07
424 425 7.330208 GGTCTTTTCTTTTATCTGTGTACGCTA 59.670 37.037 8.10 0.00 0.00 4.26
425 426 8.373992 GTCTTTTCTTTTATCTGTGTACGCTAG 58.626 37.037 8.10 3.99 0.00 3.42
426 427 8.301720 TCTTTTCTTTTATCTGTGTACGCTAGA 58.698 33.333 8.10 9.14 0.00 2.43
427 428 8.821147 TTTTCTTTTATCTGTGTACGCTAGAA 57.179 30.769 8.10 0.00 0.00 2.10
428 429 7.807687 TTCTTTTATCTGTGTACGCTAGAAC 57.192 36.000 8.10 0.00 0.00 3.01
429 430 7.154435 TCTTTTATCTGTGTACGCTAGAACT 57.846 36.000 8.10 0.00 0.00 3.01
430 431 8.272545 TCTTTTATCTGTGTACGCTAGAACTA 57.727 34.615 8.10 0.00 0.00 2.24
431 432 8.900781 TCTTTTATCTGTGTACGCTAGAACTAT 58.099 33.333 8.10 0.00 0.00 2.12
432 433 9.171701 CTTTTATCTGTGTACGCTAGAACTATC 57.828 37.037 8.10 0.00 0.00 2.08
433 434 8.447924 TTTATCTGTGTACGCTAGAACTATCT 57.552 34.615 8.10 0.00 39.82 1.98
434 435 6.945938 ATCTGTGTACGCTAGAACTATCTT 57.054 37.500 8.10 0.00 37.10 2.40
435 436 6.754702 TCTGTGTACGCTAGAACTATCTTT 57.245 37.500 8.10 0.00 37.10 2.52
436 437 7.154435 TCTGTGTACGCTAGAACTATCTTTT 57.846 36.000 8.10 0.00 37.10 2.27
437 438 7.600065 TCTGTGTACGCTAGAACTATCTTTTT 58.400 34.615 8.10 0.00 37.10 1.94
438 439 8.733458 TCTGTGTACGCTAGAACTATCTTTTTA 58.267 33.333 8.10 0.00 37.10 1.52
439 440 9.517609 CTGTGTACGCTAGAACTATCTTTTTAT 57.482 33.333 8.10 0.00 37.10 1.40
440 441 9.512435 TGTGTACGCTAGAACTATCTTTTTATC 57.488 33.333 8.10 0.00 37.10 1.75
441 442 8.680261 GTGTACGCTAGAACTATCTTTTTATCG 58.320 37.037 0.00 0.00 37.10 2.92
442 443 7.859377 TGTACGCTAGAACTATCTTTTTATCGG 59.141 37.037 0.00 0.00 37.10 4.18
443 444 7.035840 ACGCTAGAACTATCTTTTTATCGGA 57.964 36.000 0.00 0.00 37.10 4.55
444 445 7.486647 ACGCTAGAACTATCTTTTTATCGGAA 58.513 34.615 0.00 0.00 37.10 4.30
445 446 7.977853 ACGCTAGAACTATCTTTTTATCGGAAA 59.022 33.333 0.00 0.00 37.10 3.13
446 447 8.814235 CGCTAGAACTATCTTTTTATCGGAAAA 58.186 33.333 0.00 0.00 37.10 2.29
495 496 4.643387 GGGCGAGGGTGTGCTGTT 62.643 66.667 0.00 0.00 0.00 3.16
496 497 2.594592 GGCGAGGGTGTGCTGTTT 60.595 61.111 0.00 0.00 0.00 2.83
497 498 2.639286 GCGAGGGTGTGCTGTTTG 59.361 61.111 0.00 0.00 0.00 2.93
498 499 1.891919 GCGAGGGTGTGCTGTTTGA 60.892 57.895 0.00 0.00 0.00 2.69
499 500 1.237285 GCGAGGGTGTGCTGTTTGAT 61.237 55.000 0.00 0.00 0.00 2.57
500 501 0.518636 CGAGGGTGTGCTGTTTGATG 59.481 55.000 0.00 0.00 0.00 3.07
501 502 1.609208 GAGGGTGTGCTGTTTGATGT 58.391 50.000 0.00 0.00 0.00 3.06
502 503 1.267806 GAGGGTGTGCTGTTTGATGTG 59.732 52.381 0.00 0.00 0.00 3.21
503 504 1.133823 AGGGTGTGCTGTTTGATGTGA 60.134 47.619 0.00 0.00 0.00 3.58
504 505 1.680735 GGGTGTGCTGTTTGATGTGAA 59.319 47.619 0.00 0.00 0.00 3.18
505 506 2.100584 GGGTGTGCTGTTTGATGTGAAA 59.899 45.455 0.00 0.00 0.00 2.69
506 507 3.430098 GGGTGTGCTGTTTGATGTGAAAA 60.430 43.478 0.00 0.00 0.00 2.29
507 508 3.798337 GGTGTGCTGTTTGATGTGAAAAG 59.202 43.478 0.00 0.00 0.00 2.27
508 509 3.798337 GTGTGCTGTTTGATGTGAAAAGG 59.202 43.478 0.00 0.00 0.00 3.11
509 510 2.796593 GTGCTGTTTGATGTGAAAAGGC 59.203 45.455 0.00 0.00 0.00 4.35
510 511 2.224018 TGCTGTTTGATGTGAAAAGGCC 60.224 45.455 0.00 0.00 0.00 5.19
511 512 2.224018 GCTGTTTGATGTGAAAAGGCCA 60.224 45.455 5.01 0.00 0.00 5.36
512 513 3.740764 GCTGTTTGATGTGAAAAGGCCAA 60.741 43.478 5.01 0.00 0.00 4.52
513 514 4.634199 CTGTTTGATGTGAAAAGGCCAAT 58.366 39.130 5.01 0.00 0.00 3.16
514 515 4.630111 TGTTTGATGTGAAAAGGCCAATC 58.370 39.130 5.01 0.00 0.00 2.67
515 516 3.959535 TTGATGTGAAAAGGCCAATCC 57.040 42.857 5.01 0.00 0.00 3.01
516 517 2.886913 TGATGTGAAAAGGCCAATCCA 58.113 42.857 5.01 1.08 37.29 3.41
517 518 2.827322 TGATGTGAAAAGGCCAATCCAG 59.173 45.455 5.01 0.00 37.29 3.86
518 519 2.380064 TGTGAAAAGGCCAATCCAGT 57.620 45.000 5.01 0.00 37.29 4.00
519 520 1.962807 TGTGAAAAGGCCAATCCAGTG 59.037 47.619 5.01 0.00 37.29 3.66
520 521 1.963515 GTGAAAAGGCCAATCCAGTGT 59.036 47.619 5.01 0.00 37.29 3.55
521 522 3.153919 GTGAAAAGGCCAATCCAGTGTA 58.846 45.455 5.01 0.00 37.29 2.90
522 523 3.057526 GTGAAAAGGCCAATCCAGTGTAC 60.058 47.826 5.01 0.00 37.29 2.90
523 524 2.215942 AAAGGCCAATCCAGTGTACC 57.784 50.000 5.01 0.00 37.29 3.34
524 525 1.072266 AAGGCCAATCCAGTGTACCA 58.928 50.000 5.01 0.00 37.29 3.25
525 526 0.328258 AGGCCAATCCAGTGTACCAC 59.672 55.000 5.01 0.00 37.29 4.16
526 527 0.679960 GGCCAATCCAGTGTACCACC 60.680 60.000 0.00 0.00 34.49 4.61
527 528 1.024579 GCCAATCCAGTGTACCACCG 61.025 60.000 0.00 0.00 34.49 4.94
528 529 0.611200 CCAATCCAGTGTACCACCGA 59.389 55.000 0.00 0.00 34.49 4.69
529 530 1.674817 CCAATCCAGTGTACCACCGAC 60.675 57.143 0.00 0.00 34.49 4.79
530 531 0.611714 AATCCAGTGTACCACCGACC 59.388 55.000 0.00 0.00 34.49 4.79
531 532 0.543410 ATCCAGTGTACCACCGACCA 60.543 55.000 0.00 0.00 34.49 4.02
532 533 1.183030 TCCAGTGTACCACCGACCAG 61.183 60.000 0.00 0.00 34.49 4.00
533 534 1.374252 CAGTGTACCACCGACCAGC 60.374 63.158 0.00 0.00 34.49 4.85
534 535 2.431942 GTGTACCACCGACCAGCG 60.432 66.667 0.00 0.00 40.47 5.18
546 547 2.503061 CCAGCGGGTCTGATGAGG 59.497 66.667 0.00 0.00 45.72 3.86
547 548 2.060383 CCAGCGGGTCTGATGAGGA 61.060 63.158 0.00 0.00 45.72 3.71
548 549 1.617018 CCAGCGGGTCTGATGAGGAA 61.617 60.000 0.00 0.00 45.72 3.36
549 550 0.250234 CAGCGGGTCTGATGAGGAAA 59.750 55.000 0.00 0.00 45.72 3.13
550 551 0.250513 AGCGGGTCTGATGAGGAAAC 59.749 55.000 0.00 0.00 0.00 2.78
551 552 0.036388 GCGGGTCTGATGAGGAAACA 60.036 55.000 0.00 0.00 0.00 2.83
552 553 2.009042 GCGGGTCTGATGAGGAAACAG 61.009 57.143 0.00 0.00 0.00 3.16
553 554 1.406069 CGGGTCTGATGAGGAAACAGG 60.406 57.143 0.00 0.00 33.19 4.00
554 555 1.065126 GGGTCTGATGAGGAAACAGGG 60.065 57.143 0.00 0.00 33.19 4.45
555 556 1.680249 GGTCTGATGAGGAAACAGGGC 60.680 57.143 0.00 0.00 33.19 5.19
556 557 0.250234 TCTGATGAGGAAACAGGGCG 59.750 55.000 0.00 0.00 33.19 6.13
557 558 0.250234 CTGATGAGGAAACAGGGCGA 59.750 55.000 0.00 0.00 0.00 5.54
558 559 0.250234 TGATGAGGAAACAGGGCGAG 59.750 55.000 0.00 0.00 0.00 5.03
559 560 1.078143 ATGAGGAAACAGGGCGAGC 60.078 57.895 0.00 0.00 0.00 5.03
560 561 2.815647 GAGGAAACAGGGCGAGCG 60.816 66.667 0.00 0.00 0.00 5.03
578 579 2.578713 CGCACGCGTCCGTCTTAT 60.579 61.111 15.75 0.00 46.39 1.73
579 580 2.845739 CGCACGCGTCCGTCTTATG 61.846 63.158 15.75 0.00 46.39 1.90
580 581 1.804326 GCACGCGTCCGTCTTATGT 60.804 57.895 9.86 0.00 46.39 2.29
581 582 1.349259 GCACGCGTCCGTCTTATGTT 61.349 55.000 9.86 0.00 46.39 2.71
582 583 0.638746 CACGCGTCCGTCTTATGTTC 59.361 55.000 9.86 0.00 46.39 3.18
583 584 0.795735 ACGCGTCCGTCTTATGTTCG 60.796 55.000 5.58 0.00 46.39 3.95
584 585 0.795735 CGCGTCCGTCTTATGTTCGT 60.796 55.000 0.00 0.00 0.00 3.85
585 586 0.638746 GCGTCCGTCTTATGTTCGTG 59.361 55.000 0.00 0.00 0.00 4.35
586 587 0.638746 CGTCCGTCTTATGTTCGTGC 59.361 55.000 0.00 0.00 0.00 5.34
587 588 0.997196 GTCCGTCTTATGTTCGTGCC 59.003 55.000 0.00 0.00 0.00 5.01
588 589 0.457166 TCCGTCTTATGTTCGTGCCG 60.457 55.000 0.00 0.00 0.00 5.69
589 590 0.457166 CCGTCTTATGTTCGTGCCGA 60.457 55.000 0.00 0.00 0.00 5.54
590 591 0.638746 CGTCTTATGTTCGTGCCGAC 59.361 55.000 0.00 0.00 34.89 4.79
592 593 1.074319 TCTTATGTTCGTGCCGACGC 61.074 55.000 0.00 0.00 45.68 5.19
593 594 1.348538 CTTATGTTCGTGCCGACGCA 61.349 55.000 0.00 1.23 45.68 5.24
601 602 3.430862 TGCCGACGCAAATCAGGC 61.431 61.111 0.00 0.00 43.74 4.85
602 603 3.127533 GCCGACGCAAATCAGGCT 61.128 61.111 0.00 0.00 44.06 4.58
603 604 3.093278 CCGACGCAAATCAGGCTC 58.907 61.111 0.00 0.00 0.00 4.70
604 605 1.741401 CCGACGCAAATCAGGCTCA 60.741 57.895 0.00 0.00 0.00 4.26
605 606 1.298157 CCGACGCAAATCAGGCTCAA 61.298 55.000 0.00 0.00 0.00 3.02
606 607 0.095935 CGACGCAAATCAGGCTCAAG 59.904 55.000 0.00 0.00 0.00 3.02
607 608 1.442769 GACGCAAATCAGGCTCAAGA 58.557 50.000 0.00 0.00 0.00 3.02
608 609 1.806542 GACGCAAATCAGGCTCAAGAA 59.193 47.619 0.00 0.00 0.00 2.52
609 610 2.421424 GACGCAAATCAGGCTCAAGAAT 59.579 45.455 0.00 0.00 0.00 2.40
610 611 2.163010 ACGCAAATCAGGCTCAAGAATG 59.837 45.455 0.00 0.00 0.00 2.67
611 612 2.479049 CGCAAATCAGGCTCAAGAATGG 60.479 50.000 0.00 0.00 0.00 3.16
612 613 2.756760 GCAAATCAGGCTCAAGAATGGA 59.243 45.455 0.00 0.00 0.00 3.41
613 614 3.428589 GCAAATCAGGCTCAAGAATGGAC 60.429 47.826 0.00 0.00 0.00 4.02
614 615 2.725221 ATCAGGCTCAAGAATGGACC 57.275 50.000 0.00 0.00 0.00 4.46
615 616 0.250234 TCAGGCTCAAGAATGGACCG 59.750 55.000 0.00 0.00 0.00 4.79
616 617 0.250234 CAGGCTCAAGAATGGACCGA 59.750 55.000 0.00 0.00 0.00 4.69
617 618 0.984230 AGGCTCAAGAATGGACCGAA 59.016 50.000 0.00 0.00 0.00 4.30
618 619 1.351017 AGGCTCAAGAATGGACCGAAA 59.649 47.619 0.00 0.00 0.00 3.46
619 620 2.159382 GGCTCAAGAATGGACCGAAAA 58.841 47.619 0.00 0.00 0.00 2.29
620 621 2.755103 GGCTCAAGAATGGACCGAAAAT 59.245 45.455 0.00 0.00 0.00 1.82
621 622 3.428045 GGCTCAAGAATGGACCGAAAATG 60.428 47.826 0.00 0.00 0.00 2.32
622 623 3.428045 GCTCAAGAATGGACCGAAAATGG 60.428 47.826 0.00 0.00 0.00 3.16
623 624 3.088532 TCAAGAATGGACCGAAAATGGG 58.911 45.455 0.00 0.00 0.00 4.00
624 625 2.825532 CAAGAATGGACCGAAAATGGGT 59.174 45.455 0.00 0.00 41.48 4.51
630 631 2.946947 ACCGAAAATGGGTCTGCAG 58.053 52.632 7.63 7.63 29.94 4.41
631 632 0.609131 ACCGAAAATGGGTCTGCAGG 60.609 55.000 15.13 0.00 29.94 4.85
632 633 1.508088 CGAAAATGGGTCTGCAGGC 59.492 57.895 15.13 13.00 0.00 4.85
633 634 1.508088 GAAAATGGGTCTGCAGGCG 59.492 57.895 15.13 0.00 0.00 5.52
634 635 1.937546 GAAAATGGGTCTGCAGGCGG 61.938 60.000 15.13 0.00 0.00 6.13
635 636 2.424842 AAAATGGGTCTGCAGGCGGA 62.425 55.000 15.13 1.48 0.00 5.54
640 641 2.357034 GTCTGCAGGCGGACGAAA 60.357 61.111 16.63 0.00 41.68 3.46
641 642 2.048222 TCTGCAGGCGGACGAAAG 60.048 61.111 15.13 0.00 0.00 2.62
642 643 3.793144 CTGCAGGCGGACGAAAGC 61.793 66.667 5.57 0.00 0.00 3.51
645 646 4.735132 CAGGCGGACGAAAGCGGA 62.735 66.667 0.00 0.00 43.17 5.54
646 647 4.736896 AGGCGGACGAAAGCGGAC 62.737 66.667 0.00 0.00 43.17 4.79
648 649 2.813908 GCGGACGAAAGCGGACAT 60.814 61.111 0.00 0.00 43.17 3.06
649 650 3.081133 CGGACGAAAGCGGACATG 58.919 61.111 0.00 0.00 43.17 3.21
650 651 2.785258 GGACGAAAGCGGACATGC 59.215 61.111 0.00 0.00 43.17 4.06
651 652 2.032634 GGACGAAAGCGGACATGCA 61.033 57.895 0.00 0.00 43.17 3.96
652 653 1.369091 GGACGAAAGCGGACATGCAT 61.369 55.000 0.00 0.00 43.17 3.96
653 654 0.026803 GACGAAAGCGGACATGCATC 59.973 55.000 0.00 0.00 43.17 3.91
654 655 1.353103 CGAAAGCGGACATGCATCC 59.647 57.895 0.00 0.00 37.31 3.51
681 682 3.370231 GGCACGTTGGGCCGATTT 61.370 61.111 0.00 0.00 42.39 2.17
682 683 2.648454 GCACGTTGGGCCGATTTT 59.352 55.556 0.00 0.00 0.00 1.82
683 684 1.006688 GCACGTTGGGCCGATTTTT 60.007 52.632 0.00 0.00 0.00 1.94
684 685 1.006825 GCACGTTGGGCCGATTTTTC 61.007 55.000 0.00 0.00 0.00 2.29
685 686 0.596082 CACGTTGGGCCGATTTTTCT 59.404 50.000 0.00 0.00 0.00 2.52
686 687 0.596082 ACGTTGGGCCGATTTTTCTG 59.404 50.000 0.00 0.00 0.00 3.02
687 688 0.596082 CGTTGGGCCGATTTTTCTGT 59.404 50.000 0.00 0.00 0.00 3.41
688 689 1.401018 CGTTGGGCCGATTTTTCTGTC 60.401 52.381 0.00 0.00 0.00 3.51
689 690 1.886542 GTTGGGCCGATTTTTCTGTCT 59.113 47.619 0.00 0.00 0.00 3.41
690 691 1.533625 TGGGCCGATTTTTCTGTCTG 58.466 50.000 0.00 0.00 0.00 3.51
691 692 0.171231 GGGCCGATTTTTCTGTCTGC 59.829 55.000 0.00 0.00 0.00 4.26
692 693 0.179189 GGCCGATTTTTCTGTCTGCG 60.179 55.000 0.00 0.00 0.00 5.18
693 694 0.794605 GCCGATTTTTCTGTCTGCGC 60.795 55.000 0.00 0.00 0.00 6.09
694 695 0.798776 CCGATTTTTCTGTCTGCGCT 59.201 50.000 9.73 0.00 0.00 5.92
695 696 1.464687 CCGATTTTTCTGTCTGCGCTG 60.465 52.381 9.73 8.88 0.00 5.18
696 697 1.195448 CGATTTTTCTGTCTGCGCTGT 59.805 47.619 9.73 0.00 0.00 4.40
697 698 2.411748 CGATTTTTCTGTCTGCGCTGTA 59.588 45.455 9.73 1.27 0.00 2.74
698 699 3.722082 CGATTTTTCTGTCTGCGCTGTAC 60.722 47.826 9.73 9.24 0.00 2.90
699 700 1.508632 TTTTCTGTCTGCGCTGTACC 58.491 50.000 9.73 1.73 0.00 3.34
700 701 0.391228 TTTCTGTCTGCGCTGTACCA 59.609 50.000 9.73 6.43 0.00 3.25
701 702 0.391228 TTCTGTCTGCGCTGTACCAA 59.609 50.000 9.73 0.00 0.00 3.67
702 703 0.391228 TCTGTCTGCGCTGTACCAAA 59.609 50.000 9.73 0.00 0.00 3.28
703 704 0.512952 CTGTCTGCGCTGTACCAAAC 59.487 55.000 9.73 1.49 0.00 2.93
704 705 1.218875 TGTCTGCGCTGTACCAAACG 61.219 55.000 9.73 0.00 0.00 3.60
705 706 0.942410 GTCTGCGCTGTACCAAACGA 60.942 55.000 9.73 0.00 0.00 3.85
706 707 0.249531 TCTGCGCTGTACCAAACGAA 60.250 50.000 9.73 0.00 0.00 3.85
707 708 0.110823 CTGCGCTGTACCAAACGAAC 60.111 55.000 9.73 0.00 0.00 3.95
708 709 1.154727 GCGCTGTACCAAACGAACG 60.155 57.895 0.00 0.00 0.00 3.95
709 710 1.489824 CGCTGTACCAAACGAACGG 59.510 57.895 0.00 0.00 0.00 4.44
710 711 1.205820 GCTGTACCAAACGAACGGC 59.794 57.895 0.00 0.00 38.25 5.68
711 712 1.500512 GCTGTACCAAACGAACGGCA 61.501 55.000 0.00 0.00 43.49 5.69
712 713 0.938713 CTGTACCAAACGAACGGCAA 59.061 50.000 0.00 0.00 0.00 4.52
713 714 0.656785 TGTACCAAACGAACGGCAAC 59.343 50.000 0.00 0.00 0.00 4.17
726 727 2.540145 GGCAACGGACGAAATGAGT 58.460 52.632 0.00 0.00 0.00 3.41
727 728 0.872388 GGCAACGGACGAAATGAGTT 59.128 50.000 0.00 0.00 0.00 3.01
728 729 1.399727 GGCAACGGACGAAATGAGTTG 60.400 52.381 0.00 2.66 43.37 3.16
729 730 1.950472 CAACGGACGAAATGAGTTGC 58.050 50.000 0.00 0.00 36.27 4.17
730 731 0.872388 AACGGACGAAATGAGTTGCC 59.128 50.000 0.00 0.00 0.00 4.52
731 732 0.953960 ACGGACGAAATGAGTTGCCC 60.954 55.000 0.00 0.00 0.00 5.36
732 733 1.644786 CGGACGAAATGAGTTGCCCC 61.645 60.000 0.00 0.00 0.00 5.80
733 734 0.608035 GGACGAAATGAGTTGCCCCA 60.608 55.000 0.00 0.00 0.00 4.96
734 735 1.463674 GACGAAATGAGTTGCCCCAT 58.536 50.000 0.00 0.00 0.00 4.00
735 736 1.818674 GACGAAATGAGTTGCCCCATT 59.181 47.619 0.00 0.00 34.75 3.16
736 737 1.545582 ACGAAATGAGTTGCCCCATTG 59.454 47.619 0.00 0.00 33.70 2.82
737 738 1.135024 CGAAATGAGTTGCCCCATTGG 60.135 52.381 0.00 0.00 33.70 3.16
738 739 2.178580 GAAATGAGTTGCCCCATTGGA 58.821 47.619 3.62 0.00 33.70 3.53
739 740 1.856629 AATGAGTTGCCCCATTGGAG 58.143 50.000 3.62 0.00 35.39 3.86
740 741 0.706433 ATGAGTTGCCCCATTGGAGT 59.294 50.000 3.62 0.00 35.39 3.85
741 742 0.482446 TGAGTTGCCCCATTGGAGTT 59.518 50.000 3.62 0.00 35.39 3.01
742 743 0.890683 GAGTTGCCCCATTGGAGTTG 59.109 55.000 3.62 0.00 35.39 3.16
743 744 1.187567 AGTTGCCCCATTGGAGTTGC 61.188 55.000 3.62 2.08 35.39 4.17
744 745 1.155859 TTGCCCCATTGGAGTTGCT 59.844 52.632 3.62 0.00 35.39 3.91
745 746 0.899717 TTGCCCCATTGGAGTTGCTC 60.900 55.000 3.62 0.00 35.39 4.26
746 747 1.000396 GCCCCATTGGAGTTGCTCT 60.000 57.895 3.62 0.00 35.39 4.09
747 748 0.613012 GCCCCATTGGAGTTGCTCTT 60.613 55.000 3.62 0.00 35.39 2.85
748 749 1.340991 GCCCCATTGGAGTTGCTCTTA 60.341 52.381 3.62 0.00 35.39 2.10
749 750 2.687914 GCCCCATTGGAGTTGCTCTTAT 60.688 50.000 3.62 0.00 35.39 1.73
750 751 3.435026 GCCCCATTGGAGTTGCTCTTATA 60.435 47.826 3.62 0.00 35.39 0.98
751 752 4.392940 CCCCATTGGAGTTGCTCTTATAG 58.607 47.826 3.62 0.00 35.39 1.31
752 753 5.284504 CCCCATTGGAGTTGCTCTTATAGC 61.285 50.000 3.62 0.00 44.49 2.97
764 765 5.363979 GCTCTTATAGCCCTTTATTGCAC 57.636 43.478 0.00 0.00 46.25 4.57
765 766 5.066593 GCTCTTATAGCCCTTTATTGCACT 58.933 41.667 0.00 0.00 46.25 4.40
766 767 5.532779 GCTCTTATAGCCCTTTATTGCACTT 59.467 40.000 0.00 0.00 46.25 3.16
767 768 6.514048 GCTCTTATAGCCCTTTATTGCACTTG 60.514 42.308 0.00 0.00 46.25 3.16
768 769 5.299279 TCTTATAGCCCTTTATTGCACTTGC 59.701 40.000 0.00 0.00 42.50 4.01
769 770 1.928868 AGCCCTTTATTGCACTTGCT 58.071 45.000 2.33 0.00 42.66 3.91
770 771 1.821136 AGCCCTTTATTGCACTTGCTC 59.179 47.619 2.33 0.00 42.66 4.26
771 772 1.821136 GCCCTTTATTGCACTTGCTCT 59.179 47.619 2.33 0.00 42.66 4.09
772 773 2.416431 GCCCTTTATTGCACTTGCTCTG 60.416 50.000 2.33 0.00 42.66 3.35
773 774 3.084039 CCCTTTATTGCACTTGCTCTGA 58.916 45.455 2.33 0.00 42.66 3.27
774 775 3.119708 CCCTTTATTGCACTTGCTCTGAC 60.120 47.826 2.33 0.00 42.66 3.51
775 776 3.425359 CCTTTATTGCACTTGCTCTGACG 60.425 47.826 2.33 0.00 42.66 4.35
776 777 2.455674 TATTGCACTTGCTCTGACGT 57.544 45.000 2.33 0.00 42.66 4.34
777 778 0.870393 ATTGCACTTGCTCTGACGTG 59.130 50.000 0.00 0.00 42.66 4.49
778 779 0.179086 TTGCACTTGCTCTGACGTGA 60.179 50.000 0.00 0.00 42.66 4.35
779 780 0.033920 TGCACTTGCTCTGACGTGAT 59.966 50.000 0.00 0.00 42.66 3.06
780 781 1.151668 GCACTTGCTCTGACGTGATT 58.848 50.000 0.00 0.00 38.21 2.57
781 782 1.127582 GCACTTGCTCTGACGTGATTC 59.872 52.381 0.00 0.00 38.21 2.52
782 783 2.681706 CACTTGCTCTGACGTGATTCT 58.318 47.619 0.00 0.00 0.00 2.40
783 784 3.838120 CACTTGCTCTGACGTGATTCTA 58.162 45.455 0.00 0.00 0.00 2.10
784 785 4.237724 CACTTGCTCTGACGTGATTCTAA 58.762 43.478 0.00 0.00 0.00 2.10
785 786 4.686091 CACTTGCTCTGACGTGATTCTAAA 59.314 41.667 0.00 0.00 0.00 1.85
786 787 5.177511 CACTTGCTCTGACGTGATTCTAAAA 59.822 40.000 0.00 0.00 0.00 1.52
787 788 5.758296 ACTTGCTCTGACGTGATTCTAAAAA 59.242 36.000 0.00 0.00 0.00 1.94
811 812 9.474313 AAAATTAAAATCTACCTGGATGTAGCA 57.526 29.630 0.00 0.00 38.46 3.49
812 813 9.646522 AAATTAAAATCTACCTGGATGTAGCAT 57.353 29.630 0.00 0.00 38.46 3.79
813 814 9.646522 AATTAAAATCTACCTGGATGTAGCATT 57.353 29.630 0.00 0.00 38.46 3.56
814 815 8.677148 TTAAAATCTACCTGGATGTAGCATTC 57.323 34.615 0.00 0.00 38.46 2.67
815 816 4.899352 ATCTACCTGGATGTAGCATTCC 57.101 45.455 0.00 0.00 38.46 3.01
816 817 3.928754 TCTACCTGGATGTAGCATTCCT 58.071 45.455 0.00 0.00 38.46 3.36
817 818 3.898123 TCTACCTGGATGTAGCATTCCTC 59.102 47.826 0.00 0.00 38.46 3.71
818 819 1.414181 ACCTGGATGTAGCATTCCTCG 59.586 52.381 0.00 0.00 32.95 4.63
819 820 1.270518 CCTGGATGTAGCATTCCTCGG 60.271 57.143 0.00 0.00 32.95 4.63
820 821 1.414181 CTGGATGTAGCATTCCTCGGT 59.586 52.381 0.00 0.00 32.95 4.69
821 822 1.138859 TGGATGTAGCATTCCTCGGTG 59.861 52.381 0.00 0.00 32.95 4.94
822 823 1.541233 GGATGTAGCATTCCTCGGTGG 60.541 57.143 0.00 0.00 37.10 4.61
823 824 1.412710 GATGTAGCATTCCTCGGTGGA 59.587 52.381 0.00 0.00 44.51 4.02
923 1284 2.053116 GTGCTGTGCGTGTGTTCG 60.053 61.111 0.00 0.00 0.00 3.95
971 1336 1.443407 CAGATTCGGATCACGGCCT 59.557 57.895 6.44 0.00 44.45 5.19
1127 1498 4.681978 GCACCGAGACCGTGCCTT 62.682 66.667 1.49 0.00 37.08 4.35
1132 1503 2.636412 CGAGACCGTGCCTTCCTCA 61.636 63.158 0.00 0.00 0.00 3.86
1152 1523 4.394712 GTCCGGTGACCCAGCCAG 62.395 72.222 0.00 0.00 35.34 4.85
1208 1579 1.300971 GGCAAACATCTCTGCTCGCA 61.301 55.000 0.00 0.00 38.65 5.10
1593 1964 1.996786 GAACGCATCGAGGGGTACGA 61.997 60.000 20.30 0.00 43.65 3.43
1627 1998 4.862092 ATCGCGCTCCTGCACTCG 62.862 66.667 5.56 0.00 39.64 4.18
1755 2138 2.188469 CCCGTACATCAACCCCGG 59.812 66.667 0.00 0.00 38.39 5.73
2047 7436 3.616956 TGATTCAGTAACAGAGGCTGG 57.383 47.619 0.00 0.00 35.51 4.85
2051 7440 1.207791 CAGTAACAGAGGCTGGGGAT 58.792 55.000 0.00 0.00 35.51 3.85
2096 7488 8.961294 TTTTCATGGTTCTGAATTCACAAAAT 57.039 26.923 3.38 0.00 35.20 1.82
2107 7500 9.515020 TCTGAATTCACAAAATAAGTGTGTTTC 57.485 29.630 3.38 9.20 45.38 2.78
2219 9580 1.331756 GGTTCATCAGTTGCATAGCCG 59.668 52.381 0.00 0.00 0.00 5.52
2225 9586 1.209261 TCAGTTGCATAGCCGGATCAA 59.791 47.619 5.05 0.00 0.00 2.57
2533 10636 0.463833 CGTCCATTGCCTCCTTACCC 60.464 60.000 0.00 0.00 0.00 3.69
2537 10640 0.557729 CATTGCCTCCTTACCCCCAT 59.442 55.000 0.00 0.00 0.00 4.00
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 4.069232 CCTCAGAAGGCGCCACGA 62.069 66.667 31.54 17.44 35.37 4.35
14 15 1.991339 TATCCCGACGAGGCCTCAGA 61.991 60.000 31.67 18.95 39.21 3.27
204 205 2.094700 TGTAGAAGTGGCACTCATCGAC 60.095 50.000 22.31 20.55 0.00 4.20
209 210 1.416030 TGCTTGTAGAAGTGGCACTCA 59.584 47.619 22.31 11.74 0.00 3.41
213 214 2.158682 TCCTTTGCTTGTAGAAGTGGCA 60.159 45.455 1.12 0.00 0.00 4.92
218 219 3.503748 CCAACCTCCTTTGCTTGTAGAAG 59.496 47.826 0.00 0.00 0.00 2.85
259 260 1.476007 CCTATAGGCGGCTTGCTCCT 61.476 60.000 19.76 0.00 45.43 3.69
260 261 1.004440 CCTATAGGCGGCTTGCTCC 60.004 63.158 19.76 0.00 45.43 4.70
261 262 1.004440 CCCTATAGGCGGCTTGCTC 60.004 63.158 19.76 0.00 45.43 4.26
262 263 1.459539 TCCCTATAGGCGGCTTGCT 60.460 57.895 19.76 5.14 45.43 3.91
263 264 1.004440 CTCCCTATAGGCGGCTTGC 60.004 63.158 19.76 0.00 45.38 4.01
264 265 0.832135 TCCTCCCTATAGGCGGCTTG 60.832 60.000 19.76 8.10 36.51 4.01
265 266 0.832559 GTCCTCCCTATAGGCGGCTT 60.833 60.000 19.76 7.89 36.51 4.35
266 267 1.228925 GTCCTCCCTATAGGCGGCT 60.229 63.158 18.33 18.33 36.51 5.52
267 268 1.119574 TTGTCCTCCCTATAGGCGGC 61.120 60.000 13.85 0.00 36.51 6.53
268 269 0.969894 CTTGTCCTCCCTATAGGCGG 59.030 60.000 13.85 14.98 36.51 6.13
269 270 0.318762 GCTTGTCCTCCCTATAGGCG 59.681 60.000 13.85 7.07 36.51 5.52
270 271 1.723288 AGCTTGTCCTCCCTATAGGC 58.277 55.000 13.85 0.00 36.51 3.93
271 272 2.820787 CGTAGCTTGTCCTCCCTATAGG 59.179 54.545 12.27 12.27 38.06 2.57
272 273 3.752665 TCGTAGCTTGTCCTCCCTATAG 58.247 50.000 0.00 0.00 0.00 1.31
273 274 3.393609 TCTCGTAGCTTGTCCTCCCTATA 59.606 47.826 0.00 0.00 0.00 1.31
274 275 2.175069 TCTCGTAGCTTGTCCTCCCTAT 59.825 50.000 0.00 0.00 0.00 2.57
275 276 1.562942 TCTCGTAGCTTGTCCTCCCTA 59.437 52.381 0.00 0.00 0.00 3.53
276 277 0.331954 TCTCGTAGCTTGTCCTCCCT 59.668 55.000 0.00 0.00 0.00 4.20
277 278 1.183549 TTCTCGTAGCTTGTCCTCCC 58.816 55.000 0.00 0.00 0.00 4.30
278 279 2.608268 GTTTCTCGTAGCTTGTCCTCC 58.392 52.381 0.00 0.00 0.00 4.30
279 280 2.251893 CGTTTCTCGTAGCTTGTCCTC 58.748 52.381 0.00 0.00 34.52 3.71
280 281 2.349297 CGTTTCTCGTAGCTTGTCCT 57.651 50.000 0.00 0.00 34.52 3.85
291 292 0.039798 TCTCAACCCGACGTTTCTCG 60.040 55.000 0.00 0.00 46.00 4.04
292 293 1.000496 AGTCTCAACCCGACGTTTCTC 60.000 52.381 0.00 0.00 36.53 2.87
293 294 1.038280 AGTCTCAACCCGACGTTTCT 58.962 50.000 0.00 0.00 36.53 2.52
294 295 1.861971 AAGTCTCAACCCGACGTTTC 58.138 50.000 0.00 0.00 36.53 2.78
295 296 1.937899 CAAAGTCTCAACCCGACGTTT 59.062 47.619 0.00 0.00 36.53 3.60
296 297 1.137479 TCAAAGTCTCAACCCGACGTT 59.863 47.619 0.00 0.00 36.53 3.99
297 298 0.748450 TCAAAGTCTCAACCCGACGT 59.252 50.000 0.00 0.00 36.53 4.34
298 299 1.792949 CTTCAAAGTCTCAACCCGACG 59.207 52.381 0.00 0.00 36.53 5.12
299 300 2.801111 GTCTTCAAAGTCTCAACCCGAC 59.199 50.000 0.00 0.00 0.00 4.79
300 301 2.545113 CGTCTTCAAAGTCTCAACCCGA 60.545 50.000 0.00 0.00 0.00 5.14
301 302 1.792949 CGTCTTCAAAGTCTCAACCCG 59.207 52.381 0.00 0.00 0.00 5.28
302 303 3.060602 CTCGTCTTCAAAGTCTCAACCC 58.939 50.000 0.00 0.00 0.00 4.11
303 304 2.476997 GCTCGTCTTCAAAGTCTCAACC 59.523 50.000 0.00 0.00 0.00 3.77
304 305 3.123804 TGCTCGTCTTCAAAGTCTCAAC 58.876 45.455 0.00 0.00 0.00 3.18
305 306 3.181475 ACTGCTCGTCTTCAAAGTCTCAA 60.181 43.478 0.00 0.00 0.00 3.02
306 307 2.362397 ACTGCTCGTCTTCAAAGTCTCA 59.638 45.455 0.00 0.00 0.00 3.27
307 308 3.019933 ACTGCTCGTCTTCAAAGTCTC 57.980 47.619 0.00 0.00 0.00 3.36
308 309 4.489810 CATACTGCTCGTCTTCAAAGTCT 58.510 43.478 0.00 0.00 0.00 3.24
309 310 3.061429 GCATACTGCTCGTCTTCAAAGTC 59.939 47.826 0.00 0.00 40.96 3.01
310 311 2.996621 GCATACTGCTCGTCTTCAAAGT 59.003 45.455 0.00 0.00 40.96 2.66
311 312 3.648179 GCATACTGCTCGTCTTCAAAG 57.352 47.619 0.00 0.00 40.96 2.77
330 331 1.281899 GTCTGAATGTAGGCGTCAGC 58.718 55.000 0.00 0.00 44.18 4.26
331 332 1.550065 CGTCTGAATGTAGGCGTCAG 58.450 55.000 0.00 0.00 40.67 3.51
332 333 3.713936 CGTCTGAATGTAGGCGTCA 57.286 52.632 0.00 0.00 40.67 4.35
336 337 0.454600 TCCGACGTCTGAATGTAGGC 59.545 55.000 14.70 0.00 37.17 3.93
337 338 1.065701 CCTCCGACGTCTGAATGTAGG 59.934 57.143 14.70 5.94 38.24 3.18
338 339 2.014857 TCCTCCGACGTCTGAATGTAG 58.985 52.381 14.70 0.19 0.00 2.74
339 340 2.014857 CTCCTCCGACGTCTGAATGTA 58.985 52.381 14.70 0.00 0.00 2.29
340 341 0.811915 CTCCTCCGACGTCTGAATGT 59.188 55.000 14.70 0.00 0.00 2.71
341 342 0.101399 CCTCCTCCGACGTCTGAATG 59.899 60.000 14.70 6.89 0.00 2.67
342 343 0.034380 TCCTCCTCCGACGTCTGAAT 60.034 55.000 14.70 0.00 0.00 2.57
343 344 0.959372 GTCCTCCTCCGACGTCTGAA 60.959 60.000 14.70 0.00 0.00 3.02
344 345 1.376942 GTCCTCCTCCGACGTCTGA 60.377 63.158 14.70 11.91 0.00 3.27
345 346 1.032657 ATGTCCTCCTCCGACGTCTG 61.033 60.000 14.70 7.40 32.68 3.51
346 347 0.323542 AATGTCCTCCTCCGACGTCT 60.324 55.000 14.70 0.00 32.68 4.18
347 348 1.065251 GTAATGTCCTCCTCCGACGTC 59.935 57.143 5.18 5.18 32.68 4.34
348 349 1.101331 GTAATGTCCTCCTCCGACGT 58.899 55.000 0.00 0.00 32.68 4.34
349 350 0.384669 GGTAATGTCCTCCTCCGACG 59.615 60.000 0.00 0.00 32.68 5.12
350 351 0.384669 CGGTAATGTCCTCCTCCGAC 59.615 60.000 0.00 0.00 40.29 4.79
351 352 0.256752 TCGGTAATGTCCTCCTCCGA 59.743 55.000 0.00 0.00 43.52 4.55
352 353 0.669077 CTCGGTAATGTCCTCCTCCG 59.331 60.000 0.00 0.00 39.40 4.63
353 354 1.682323 GACTCGGTAATGTCCTCCTCC 59.318 57.143 0.00 0.00 0.00 4.30
354 355 1.334243 CGACTCGGTAATGTCCTCCTC 59.666 57.143 0.00 0.00 0.00 3.71
355 356 1.390565 CGACTCGGTAATGTCCTCCT 58.609 55.000 0.00 0.00 0.00 3.69
356 357 0.384669 CCGACTCGGTAATGTCCTCC 59.615 60.000 9.51 0.00 42.73 4.30
357 358 3.940723 CCGACTCGGTAATGTCCTC 57.059 57.895 9.51 0.00 42.73 3.71
368 369 1.514443 GCTTTCCGACTCCGACTCG 60.514 63.158 0.00 0.00 38.22 4.18
369 370 1.514443 CGCTTTCCGACTCCGACTC 60.514 63.158 0.00 0.00 40.02 3.36
370 371 1.970114 TCGCTTTCCGACTCCGACT 60.970 57.895 0.00 0.00 41.89 4.18
371 372 2.564975 TCGCTTTCCGACTCCGAC 59.435 61.111 0.00 0.00 41.89 4.79
378 379 0.877071 AACTACTCGTCGCTTTCCGA 59.123 50.000 0.00 0.00 45.15 4.55
379 380 0.982673 CAACTACTCGTCGCTTTCCG 59.017 55.000 0.00 0.00 38.61 4.30
380 381 1.336609 ACCAACTACTCGTCGCTTTCC 60.337 52.381 0.00 0.00 0.00 3.13
381 382 1.984297 GACCAACTACTCGTCGCTTTC 59.016 52.381 0.00 0.00 0.00 2.62
382 383 1.612463 AGACCAACTACTCGTCGCTTT 59.388 47.619 0.00 0.00 0.00 3.51
383 384 1.245732 AGACCAACTACTCGTCGCTT 58.754 50.000 0.00 0.00 0.00 4.68
384 385 1.245732 AAGACCAACTACTCGTCGCT 58.754 50.000 0.00 0.00 0.00 4.93
385 386 2.061740 AAAGACCAACTACTCGTCGC 57.938 50.000 0.00 0.00 0.00 5.19
386 387 3.898529 AGAAAAGACCAACTACTCGTCG 58.101 45.455 0.00 0.00 0.00 5.12
387 388 6.600246 AAAAGAAAAGACCAACTACTCGTC 57.400 37.500 0.00 0.00 0.00 4.20
388 389 8.148999 AGATAAAAGAAAAGACCAACTACTCGT 58.851 33.333 0.00 0.00 0.00 4.18
389 390 8.436200 CAGATAAAAGAAAAGACCAACTACTCG 58.564 37.037 0.00 0.00 0.00 4.18
390 391 9.274206 ACAGATAAAAGAAAAGACCAACTACTC 57.726 33.333 0.00 0.00 0.00 2.59
391 392 9.057089 CACAGATAAAAGAAAAGACCAACTACT 57.943 33.333 0.00 0.00 0.00 2.57
392 393 8.837389 ACACAGATAAAAGAAAAGACCAACTAC 58.163 33.333 0.00 0.00 0.00 2.73
393 394 8.974060 ACACAGATAAAAGAAAAGACCAACTA 57.026 30.769 0.00 0.00 0.00 2.24
394 395 7.881775 ACACAGATAAAAGAAAAGACCAACT 57.118 32.000 0.00 0.00 0.00 3.16
395 396 7.797123 CGTACACAGATAAAAGAAAAGACCAAC 59.203 37.037 0.00 0.00 0.00 3.77
396 397 7.519328 GCGTACACAGATAAAAGAAAAGACCAA 60.519 37.037 0.00 0.00 0.00 3.67
397 398 6.073440 GCGTACACAGATAAAAGAAAAGACCA 60.073 38.462 0.00 0.00 0.00 4.02
398 399 6.147328 AGCGTACACAGATAAAAGAAAAGACC 59.853 38.462 0.00 0.00 0.00 3.85
399 400 7.118422 AGCGTACACAGATAAAAGAAAAGAC 57.882 36.000 0.00 0.00 0.00 3.01
400 401 8.301720 TCTAGCGTACACAGATAAAAGAAAAGA 58.698 33.333 0.00 0.00 0.00 2.52
401 402 8.462143 TCTAGCGTACACAGATAAAAGAAAAG 57.538 34.615 0.00 0.00 0.00 2.27
402 403 8.706035 GTTCTAGCGTACACAGATAAAAGAAAA 58.294 33.333 0.00 0.00 0.00 2.29
403 404 8.086522 AGTTCTAGCGTACACAGATAAAAGAAA 58.913 33.333 0.00 0.00 0.00 2.52
404 405 7.600065 AGTTCTAGCGTACACAGATAAAAGAA 58.400 34.615 0.00 0.00 0.00 2.52
405 406 7.154435 AGTTCTAGCGTACACAGATAAAAGA 57.846 36.000 0.00 0.00 0.00 2.52
406 407 9.171701 GATAGTTCTAGCGTACACAGATAAAAG 57.828 37.037 0.00 0.00 0.00 2.27
407 408 8.900781 AGATAGTTCTAGCGTACACAGATAAAA 58.099 33.333 0.00 0.00 0.00 1.52
408 409 8.447924 AGATAGTTCTAGCGTACACAGATAAA 57.552 34.615 0.00 0.00 0.00 1.40
409 410 8.447924 AAGATAGTTCTAGCGTACACAGATAA 57.552 34.615 0.00 0.00 0.00 1.75
410 411 8.447924 AAAGATAGTTCTAGCGTACACAGATA 57.552 34.615 0.00 0.00 0.00 1.98
411 412 6.945938 AAGATAGTTCTAGCGTACACAGAT 57.054 37.500 0.00 0.00 0.00 2.90
412 413 6.754702 AAAGATAGTTCTAGCGTACACAGA 57.245 37.500 0.00 0.00 0.00 3.41
413 414 7.813852 AAAAAGATAGTTCTAGCGTACACAG 57.186 36.000 0.00 0.00 0.00 3.66
414 415 9.512435 GATAAAAAGATAGTTCTAGCGTACACA 57.488 33.333 0.00 0.00 0.00 3.72
415 416 8.680261 CGATAAAAAGATAGTTCTAGCGTACAC 58.320 37.037 0.00 0.00 0.00 2.90
416 417 7.859377 CCGATAAAAAGATAGTTCTAGCGTACA 59.141 37.037 0.00 0.00 0.00 2.90
417 418 8.072567 TCCGATAAAAAGATAGTTCTAGCGTAC 58.927 37.037 0.00 0.00 0.00 3.67
418 419 8.158169 TCCGATAAAAAGATAGTTCTAGCGTA 57.842 34.615 0.00 0.00 0.00 4.42
419 420 7.035840 TCCGATAAAAAGATAGTTCTAGCGT 57.964 36.000 0.00 0.00 0.00 5.07
420 421 7.925703 TTCCGATAAAAAGATAGTTCTAGCG 57.074 36.000 0.00 0.00 0.00 4.26
478 479 4.643387 AACAGCACACCCTCGCCC 62.643 66.667 0.00 0.00 0.00 6.13
479 480 2.594592 AAACAGCACACCCTCGCC 60.595 61.111 0.00 0.00 0.00 5.54
480 481 1.237285 ATCAAACAGCACACCCTCGC 61.237 55.000 0.00 0.00 0.00 5.03
481 482 0.518636 CATCAAACAGCACACCCTCG 59.481 55.000 0.00 0.00 0.00 4.63
482 483 1.267806 CACATCAAACAGCACACCCTC 59.732 52.381 0.00 0.00 0.00 4.30
483 484 1.133823 TCACATCAAACAGCACACCCT 60.134 47.619 0.00 0.00 0.00 4.34
484 485 1.317613 TCACATCAAACAGCACACCC 58.682 50.000 0.00 0.00 0.00 4.61
485 486 3.435105 TTTCACATCAAACAGCACACC 57.565 42.857 0.00 0.00 0.00 4.16
486 487 3.798337 CCTTTTCACATCAAACAGCACAC 59.202 43.478 0.00 0.00 0.00 3.82
487 488 3.737663 GCCTTTTCACATCAAACAGCACA 60.738 43.478 0.00 0.00 0.00 4.57
488 489 2.796593 GCCTTTTCACATCAAACAGCAC 59.203 45.455 0.00 0.00 0.00 4.40
489 490 2.224018 GGCCTTTTCACATCAAACAGCA 60.224 45.455 0.00 0.00 0.00 4.41
490 491 2.224018 TGGCCTTTTCACATCAAACAGC 60.224 45.455 3.32 0.00 0.00 4.40
491 492 3.731652 TGGCCTTTTCACATCAAACAG 57.268 42.857 3.32 0.00 0.00 3.16
492 493 4.502950 GGATTGGCCTTTTCACATCAAACA 60.503 41.667 3.32 0.00 0.00 2.83
493 494 3.996363 GGATTGGCCTTTTCACATCAAAC 59.004 43.478 3.32 0.00 0.00 2.93
494 495 3.645212 TGGATTGGCCTTTTCACATCAAA 59.355 39.130 3.32 0.00 37.63 2.69
495 496 3.237746 TGGATTGGCCTTTTCACATCAA 58.762 40.909 3.32 0.00 37.63 2.57
496 497 2.827322 CTGGATTGGCCTTTTCACATCA 59.173 45.455 3.32 0.00 37.63 3.07
497 498 2.827921 ACTGGATTGGCCTTTTCACATC 59.172 45.455 3.32 0.00 37.63 3.06
498 499 2.564062 CACTGGATTGGCCTTTTCACAT 59.436 45.455 3.32 0.00 37.63 3.21
499 500 1.962807 CACTGGATTGGCCTTTTCACA 59.037 47.619 3.32 0.00 37.63 3.58
500 501 1.963515 ACACTGGATTGGCCTTTTCAC 59.036 47.619 3.32 0.00 37.63 3.18
501 502 2.380064 ACACTGGATTGGCCTTTTCA 57.620 45.000 3.32 0.00 37.63 2.69
502 503 2.492088 GGTACACTGGATTGGCCTTTTC 59.508 50.000 3.32 0.00 37.63 2.29
503 504 2.158385 TGGTACACTGGATTGGCCTTTT 60.158 45.455 3.32 0.00 37.63 2.27
504 505 1.427368 TGGTACACTGGATTGGCCTTT 59.573 47.619 3.32 0.00 37.63 3.11
505 506 1.072266 TGGTACACTGGATTGGCCTT 58.928 50.000 3.32 0.00 37.63 4.35
506 507 2.785743 TGGTACACTGGATTGGCCT 58.214 52.632 3.32 0.00 37.63 5.19
529 530 1.617018 TTCCTCATCAGACCCGCTGG 61.617 60.000 0.00 0.00 44.98 4.85
530 531 0.250234 TTTCCTCATCAGACCCGCTG 59.750 55.000 0.00 0.00 46.31 5.18
531 532 0.250513 GTTTCCTCATCAGACCCGCT 59.749 55.000 0.00 0.00 0.00 5.52
532 533 0.036388 TGTTTCCTCATCAGACCCGC 60.036 55.000 0.00 0.00 0.00 6.13
533 534 1.406069 CCTGTTTCCTCATCAGACCCG 60.406 57.143 0.00 0.00 0.00 5.28
534 535 1.065126 CCCTGTTTCCTCATCAGACCC 60.065 57.143 0.00 0.00 0.00 4.46
535 536 1.680249 GCCCTGTTTCCTCATCAGACC 60.680 57.143 0.00 0.00 0.00 3.85
536 537 1.743996 GCCCTGTTTCCTCATCAGAC 58.256 55.000 0.00 0.00 0.00 3.51
537 538 0.250234 CGCCCTGTTTCCTCATCAGA 59.750 55.000 0.00 0.00 0.00 3.27
538 539 0.250234 TCGCCCTGTTTCCTCATCAG 59.750 55.000 0.00 0.00 0.00 2.90
539 540 0.250234 CTCGCCCTGTTTCCTCATCA 59.750 55.000 0.00 0.00 0.00 3.07
540 541 1.092345 GCTCGCCCTGTTTCCTCATC 61.092 60.000 0.00 0.00 0.00 2.92
541 542 1.078143 GCTCGCCCTGTTTCCTCAT 60.078 57.895 0.00 0.00 0.00 2.90
542 543 2.347490 GCTCGCCCTGTTTCCTCA 59.653 61.111 0.00 0.00 0.00 3.86
543 544 2.815647 CGCTCGCCCTGTTTCCTC 60.816 66.667 0.00 0.00 0.00 3.71
562 563 1.349259 AACATAAGACGGACGCGTGC 61.349 55.000 20.70 21.34 0.00 5.34
563 564 0.638746 GAACATAAGACGGACGCGTG 59.361 55.000 20.70 5.54 0.00 5.34
564 565 0.795735 CGAACATAAGACGGACGCGT 60.796 55.000 13.85 13.85 0.00 6.01
565 566 0.795735 ACGAACATAAGACGGACGCG 60.796 55.000 3.53 3.53 0.00 6.01
566 567 0.638746 CACGAACATAAGACGGACGC 59.361 55.000 0.00 0.00 0.00 5.19
567 568 0.638746 GCACGAACATAAGACGGACG 59.361 55.000 0.00 0.00 0.00 4.79
568 569 0.997196 GGCACGAACATAAGACGGAC 59.003 55.000 0.00 0.00 0.00 4.79
569 570 3.429043 GGCACGAACATAAGACGGA 57.571 52.632 0.00 0.00 0.00 4.69
585 586 3.100862 GAGCCTGATTTGCGTCGGC 62.101 63.158 0.00 0.00 37.76 5.54
586 587 1.298157 TTGAGCCTGATTTGCGTCGG 61.298 55.000 0.00 0.00 0.00 4.79
587 588 0.095935 CTTGAGCCTGATTTGCGTCG 59.904 55.000 0.00 0.00 0.00 5.12
588 589 1.442769 TCTTGAGCCTGATTTGCGTC 58.557 50.000 0.00 0.00 0.00 5.19
589 590 1.896220 TTCTTGAGCCTGATTTGCGT 58.104 45.000 0.00 0.00 0.00 5.24
590 591 2.479049 CCATTCTTGAGCCTGATTTGCG 60.479 50.000 0.00 0.00 0.00 4.85
591 592 2.756760 TCCATTCTTGAGCCTGATTTGC 59.243 45.455 0.00 0.00 0.00 3.68
592 593 3.129988 GGTCCATTCTTGAGCCTGATTTG 59.870 47.826 0.00 0.00 0.00 2.32
593 594 3.359950 GGTCCATTCTTGAGCCTGATTT 58.640 45.455 0.00 0.00 0.00 2.17
594 595 2.681976 CGGTCCATTCTTGAGCCTGATT 60.682 50.000 0.00 0.00 0.00 2.57
595 596 1.134280 CGGTCCATTCTTGAGCCTGAT 60.134 52.381 0.00 0.00 0.00 2.90
596 597 0.250234 CGGTCCATTCTTGAGCCTGA 59.750 55.000 0.00 0.00 0.00 3.86
597 598 0.250234 TCGGTCCATTCTTGAGCCTG 59.750 55.000 0.00 0.00 0.00 4.85
598 599 0.984230 TTCGGTCCATTCTTGAGCCT 59.016 50.000 0.00 0.00 0.00 4.58
599 600 1.821216 TTTCGGTCCATTCTTGAGCC 58.179 50.000 0.00 0.00 0.00 4.70
600 601 3.428045 CCATTTTCGGTCCATTCTTGAGC 60.428 47.826 0.00 0.00 0.00 4.26
601 602 3.129287 CCCATTTTCGGTCCATTCTTGAG 59.871 47.826 0.00 0.00 0.00 3.02
602 603 3.088532 CCCATTTTCGGTCCATTCTTGA 58.911 45.455 0.00 0.00 0.00 3.02
603 604 2.825532 ACCCATTTTCGGTCCATTCTTG 59.174 45.455 0.00 0.00 0.00 3.02
604 605 3.089284 GACCCATTTTCGGTCCATTCTT 58.911 45.455 0.00 0.00 43.48 2.52
605 606 2.723273 GACCCATTTTCGGTCCATTCT 58.277 47.619 0.00 0.00 43.48 2.40
612 613 0.609131 CCTGCAGACCCATTTTCGGT 60.609 55.000 17.39 0.00 35.88 4.69
613 614 1.937546 GCCTGCAGACCCATTTTCGG 61.938 60.000 17.39 0.00 0.00 4.30
614 615 1.508088 GCCTGCAGACCCATTTTCG 59.492 57.895 17.39 0.00 0.00 3.46
615 616 1.508088 CGCCTGCAGACCCATTTTC 59.492 57.895 17.39 0.00 0.00 2.29
616 617 1.978617 CCGCCTGCAGACCCATTTT 60.979 57.895 17.39 0.00 0.00 1.82
617 618 2.361610 CCGCCTGCAGACCCATTT 60.362 61.111 17.39 0.00 0.00 2.32
618 619 3.329889 TCCGCCTGCAGACCCATT 61.330 61.111 17.39 0.00 0.00 3.16
619 620 4.101448 GTCCGCCTGCAGACCCAT 62.101 66.667 17.39 0.00 0.00 4.00
622 623 3.876589 TTTCGTCCGCCTGCAGACC 62.877 63.158 17.39 4.66 0.00 3.85
623 624 2.357034 TTTCGTCCGCCTGCAGAC 60.357 61.111 17.39 1.25 0.00 3.51
624 625 2.048222 CTTTCGTCCGCCTGCAGA 60.048 61.111 17.39 0.00 0.00 4.26
625 626 3.793144 GCTTTCGTCCGCCTGCAG 61.793 66.667 6.78 6.78 0.00 4.41
628 629 4.735132 TCCGCTTTCGTCCGCCTG 62.735 66.667 0.00 0.00 0.00 4.85
629 630 4.736896 GTCCGCTTTCGTCCGCCT 62.737 66.667 0.00 0.00 0.00 5.52
631 632 2.813908 ATGTCCGCTTTCGTCCGC 60.814 61.111 0.00 0.00 0.00 5.54
632 633 3.081133 CATGTCCGCTTTCGTCCG 58.919 61.111 0.00 0.00 0.00 4.79
633 634 1.369091 ATGCATGTCCGCTTTCGTCC 61.369 55.000 0.00 0.00 0.00 4.79
634 635 0.026803 GATGCATGTCCGCTTTCGTC 59.973 55.000 2.46 0.00 0.00 4.20
635 636 1.369091 GGATGCATGTCCGCTTTCGT 61.369 55.000 2.46 0.00 0.00 3.85
636 637 1.353103 GGATGCATGTCCGCTTTCG 59.647 57.895 2.46 0.00 0.00 3.46
643 644 1.334869 GATCCAAACGGATGCATGTCC 59.665 52.381 2.46 0.00 43.70 4.02
644 645 1.003545 CGATCCAAACGGATGCATGTC 60.004 52.381 2.46 0.00 43.70 3.06
645 646 1.016627 CGATCCAAACGGATGCATGT 58.983 50.000 2.46 0.00 43.70 3.21
646 647 3.831729 CGATCCAAACGGATGCATG 57.168 52.632 2.46 0.00 43.70 4.06
654 655 1.154488 CAACGTGCCGATCCAAACG 60.154 57.895 7.05 7.05 41.64 3.60
655 656 1.209127 CCAACGTGCCGATCCAAAC 59.791 57.895 0.00 0.00 0.00 2.93
656 657 1.969064 CCCAACGTGCCGATCCAAA 60.969 57.895 0.00 0.00 0.00 3.28
657 658 2.359354 CCCAACGTGCCGATCCAA 60.359 61.111 0.00 0.00 0.00 3.53
664 665 2.428960 AAAAATCGGCCCAACGTGCC 62.429 55.000 5.33 5.33 45.70 5.01
665 666 1.006688 AAAAATCGGCCCAACGTGC 60.007 52.632 0.00 0.00 34.94 5.34
666 667 0.596082 AGAAAAATCGGCCCAACGTG 59.404 50.000 0.00 0.00 34.94 4.49
667 668 0.596082 CAGAAAAATCGGCCCAACGT 59.404 50.000 0.00 0.00 34.94 3.99
668 669 0.596082 ACAGAAAAATCGGCCCAACG 59.404 50.000 0.00 0.00 0.00 4.10
669 670 1.886542 AGACAGAAAAATCGGCCCAAC 59.113 47.619 0.00 0.00 0.00 3.77
670 671 1.885887 CAGACAGAAAAATCGGCCCAA 59.114 47.619 0.00 0.00 0.00 4.12
671 672 1.533625 CAGACAGAAAAATCGGCCCA 58.466 50.000 0.00 0.00 0.00 5.36
672 673 0.171231 GCAGACAGAAAAATCGGCCC 59.829 55.000 0.00 0.00 30.81 5.80
673 674 0.179189 CGCAGACAGAAAAATCGGCC 60.179 55.000 0.00 0.00 33.10 6.13
674 675 0.794605 GCGCAGACAGAAAAATCGGC 60.795 55.000 0.30 0.00 33.33 5.54
675 676 0.798776 AGCGCAGACAGAAAAATCGG 59.201 50.000 11.47 0.00 0.00 4.18
676 677 1.195448 ACAGCGCAGACAGAAAAATCG 59.805 47.619 11.47 0.00 0.00 3.34
677 678 2.977405 ACAGCGCAGACAGAAAAATC 57.023 45.000 11.47 0.00 0.00 2.17
678 679 2.484264 GGTACAGCGCAGACAGAAAAAT 59.516 45.455 11.47 0.00 0.00 1.82
679 680 1.871039 GGTACAGCGCAGACAGAAAAA 59.129 47.619 11.47 0.00 0.00 1.94
680 681 1.202592 TGGTACAGCGCAGACAGAAAA 60.203 47.619 11.47 0.00 0.00 2.29
681 682 0.391228 TGGTACAGCGCAGACAGAAA 59.609 50.000 11.47 0.00 0.00 2.52
682 683 0.391228 TTGGTACAGCGCAGACAGAA 59.609 50.000 11.47 0.00 42.39 3.02
683 684 0.391228 TTTGGTACAGCGCAGACAGA 59.609 50.000 11.47 0.00 42.39 3.41
684 685 0.512952 GTTTGGTACAGCGCAGACAG 59.487 55.000 11.47 0.00 42.39 3.51
685 686 1.218875 CGTTTGGTACAGCGCAGACA 61.219 55.000 11.47 0.95 42.39 3.41
686 687 0.942410 TCGTTTGGTACAGCGCAGAC 60.942 55.000 11.47 3.67 42.39 3.51
687 688 0.249531 TTCGTTTGGTACAGCGCAGA 60.250 50.000 11.47 0.00 42.39 4.26
688 689 0.110823 GTTCGTTTGGTACAGCGCAG 60.111 55.000 11.47 3.33 42.39 5.18
689 690 1.823260 CGTTCGTTTGGTACAGCGCA 61.823 55.000 11.47 0.00 42.39 6.09
690 691 1.154727 CGTTCGTTTGGTACAGCGC 60.155 57.895 0.00 0.00 42.39 5.92
691 692 1.489824 CCGTTCGTTTGGTACAGCG 59.510 57.895 0.00 0.00 42.39 5.18
692 693 1.205820 GCCGTTCGTTTGGTACAGC 59.794 57.895 0.00 0.00 42.39 4.40
693 694 0.938713 TTGCCGTTCGTTTGGTACAG 59.061 50.000 0.00 0.00 42.39 2.74
694 695 0.656785 GTTGCCGTTCGTTTGGTACA 59.343 50.000 0.00 0.00 0.00 2.90
695 696 0.383368 CGTTGCCGTTCGTTTGGTAC 60.383 55.000 0.00 0.00 0.00 3.34
696 697 1.497223 CCGTTGCCGTTCGTTTGGTA 61.497 55.000 0.00 0.00 0.00 3.25
697 698 2.710698 CGTTGCCGTTCGTTTGGT 59.289 55.556 0.00 0.00 0.00 3.67
698 699 2.051703 CCGTTGCCGTTCGTTTGG 60.052 61.111 0.00 0.00 0.00 3.28
699 700 1.368374 GTCCGTTGCCGTTCGTTTG 60.368 57.895 0.00 0.00 0.00 2.93
700 701 2.873604 CGTCCGTTGCCGTTCGTTT 61.874 57.895 0.00 0.00 0.00 3.60
701 702 3.332409 CGTCCGTTGCCGTTCGTT 61.332 61.111 0.00 0.00 0.00 3.85
702 703 3.771568 TTCGTCCGTTGCCGTTCGT 62.772 57.895 0.00 0.00 32.80 3.85
703 704 1.893168 ATTTCGTCCGTTGCCGTTCG 61.893 55.000 0.00 0.00 0.00 3.95
704 705 0.452122 CATTTCGTCCGTTGCCGTTC 60.452 55.000 0.00 0.00 0.00 3.95
705 706 0.881159 TCATTTCGTCCGTTGCCGTT 60.881 50.000 0.00 0.00 0.00 4.44
706 707 1.289109 CTCATTTCGTCCGTTGCCGT 61.289 55.000 0.00 0.00 0.00 5.68
707 708 1.289109 ACTCATTTCGTCCGTTGCCG 61.289 55.000 0.00 0.00 0.00 5.69
708 709 0.872388 AACTCATTTCGTCCGTTGCC 59.128 50.000 0.00 0.00 0.00 4.52
709 710 1.950472 CAACTCATTTCGTCCGTTGC 58.050 50.000 0.00 0.00 0.00 4.17
710 711 1.399727 GGCAACTCATTTCGTCCGTTG 60.400 52.381 0.00 0.00 38.31 4.10
711 712 0.872388 GGCAACTCATTTCGTCCGTT 59.128 50.000 0.00 0.00 0.00 4.44
712 713 0.953960 GGGCAACTCATTTCGTCCGT 60.954 55.000 0.00 0.00 0.00 4.69
713 714 1.644786 GGGGCAACTCATTTCGTCCG 61.645 60.000 0.00 0.00 36.63 4.79
714 715 2.180674 GGGGCAACTCATTTCGTCC 58.819 57.895 0.00 0.00 36.63 4.79
723 724 0.890683 CAACTCCAATGGGGCAACTC 59.109 55.000 0.00 0.00 36.21 3.01
724 725 1.187567 GCAACTCCAATGGGGCAACT 61.188 55.000 0.00 0.00 36.21 3.16
725 726 1.187567 AGCAACTCCAATGGGGCAAC 61.188 55.000 0.00 0.00 36.21 4.17
726 727 0.899717 GAGCAACTCCAATGGGGCAA 60.900 55.000 0.00 0.00 36.21 4.52
727 728 1.304381 GAGCAACTCCAATGGGGCA 60.304 57.895 0.00 0.00 36.21 5.36
728 729 0.613012 AAGAGCAACTCCAATGGGGC 60.613 55.000 0.00 0.00 36.21 5.80
729 730 2.806945 TAAGAGCAACTCCAATGGGG 57.193 50.000 0.00 0.00 38.37 4.96
742 743 9.794679 GCAAGTGCAATAAAGGGCTATAAGAGC 62.795 44.444 0.00 0.00 45.35 4.09
743 744 6.514048 GCAAGTGCAATAAAGGGCTATAAGAG 60.514 42.308 0.00 0.00 41.59 2.85
744 745 5.299279 GCAAGTGCAATAAAGGGCTATAAGA 59.701 40.000 0.00 0.00 41.59 2.10
745 746 5.300286 AGCAAGTGCAATAAAGGGCTATAAG 59.700 40.000 6.00 0.00 45.16 1.73
746 747 5.200483 AGCAAGTGCAATAAAGGGCTATAA 58.800 37.500 6.00 0.00 45.16 0.98
747 748 4.792068 AGCAAGTGCAATAAAGGGCTATA 58.208 39.130 6.00 0.00 45.16 1.31
748 749 3.633986 GAGCAAGTGCAATAAAGGGCTAT 59.366 43.478 6.00 0.00 45.16 2.97
749 750 3.016736 GAGCAAGTGCAATAAAGGGCTA 58.983 45.455 6.00 0.00 45.16 3.93
750 751 1.821136 GAGCAAGTGCAATAAAGGGCT 59.179 47.619 6.00 0.00 45.16 5.19
751 752 1.821136 AGAGCAAGTGCAATAAAGGGC 59.179 47.619 6.00 0.00 45.16 5.19
752 753 3.084039 TCAGAGCAAGTGCAATAAAGGG 58.916 45.455 6.00 0.00 45.16 3.95
753 754 3.425359 CGTCAGAGCAAGTGCAATAAAGG 60.425 47.826 6.00 0.00 45.16 3.11
754 755 3.187227 ACGTCAGAGCAAGTGCAATAAAG 59.813 43.478 6.00 0.00 45.16 1.85
755 756 3.058983 CACGTCAGAGCAAGTGCAATAAA 60.059 43.478 6.00 0.00 45.16 1.40
756 757 2.480037 CACGTCAGAGCAAGTGCAATAA 59.520 45.455 6.00 0.00 45.16 1.40
757 758 2.068519 CACGTCAGAGCAAGTGCAATA 58.931 47.619 6.00 0.00 45.16 1.90
758 759 0.870393 CACGTCAGAGCAAGTGCAAT 59.130 50.000 6.00 0.00 45.16 3.56
759 760 0.179086 TCACGTCAGAGCAAGTGCAA 60.179 50.000 6.00 0.00 45.16 4.08
760 761 0.033920 ATCACGTCAGAGCAAGTGCA 59.966 50.000 6.00 0.00 45.16 4.57
761 762 1.127582 GAATCACGTCAGAGCAAGTGC 59.872 52.381 0.00 0.00 42.49 4.40
762 763 2.681706 AGAATCACGTCAGAGCAAGTG 58.318 47.619 0.00 0.00 36.06 3.16
763 764 4.521130 TTAGAATCACGTCAGAGCAAGT 57.479 40.909 0.00 0.00 0.00 3.16
764 765 5.845985 TTTTAGAATCACGTCAGAGCAAG 57.154 39.130 0.00 0.00 0.00 4.01
785 786 9.474313 TGCTACATCCAGGTAGATTTTAATTTT 57.526 29.630 2.59 0.00 42.68 1.82
786 787 9.646522 ATGCTACATCCAGGTAGATTTTAATTT 57.353 29.630 2.59 0.00 42.68 1.82
787 788 9.646522 AATGCTACATCCAGGTAGATTTTAATT 57.353 29.630 2.59 0.00 42.68 1.40
788 789 9.289782 GAATGCTACATCCAGGTAGATTTTAAT 57.710 33.333 2.59 0.00 42.68 1.40
789 790 7.719633 GGAATGCTACATCCAGGTAGATTTTAA 59.280 37.037 2.59 0.00 42.68 1.52
790 791 7.072454 AGGAATGCTACATCCAGGTAGATTTTA 59.928 37.037 2.59 0.00 42.68 1.52
791 792 6.064717 GGAATGCTACATCCAGGTAGATTTT 58.935 40.000 2.59 0.00 42.68 1.82
792 793 5.370880 AGGAATGCTACATCCAGGTAGATTT 59.629 40.000 2.59 0.00 42.68 2.17
793 794 4.910304 AGGAATGCTACATCCAGGTAGATT 59.090 41.667 2.59 0.63 42.68 2.40
794 795 4.497516 AGGAATGCTACATCCAGGTAGAT 58.502 43.478 2.59 0.00 42.68 1.98
795 796 3.898123 GAGGAATGCTACATCCAGGTAGA 59.102 47.826 2.59 0.00 42.68 2.59
796 797 3.305676 CGAGGAATGCTACATCCAGGTAG 60.306 52.174 0.00 0.00 42.88 3.18
797 798 2.628178 CGAGGAATGCTACATCCAGGTA 59.372 50.000 0.00 0.00 38.23 3.08
798 799 1.414181 CGAGGAATGCTACATCCAGGT 59.586 52.381 0.00 0.00 38.23 4.00
799 800 1.270518 CCGAGGAATGCTACATCCAGG 60.271 57.143 0.00 0.00 38.23 4.45
800 801 1.414181 ACCGAGGAATGCTACATCCAG 59.586 52.381 0.00 0.00 38.23 3.86
801 802 1.138859 CACCGAGGAATGCTACATCCA 59.861 52.381 0.00 0.00 38.23 3.41
802 803 1.541233 CCACCGAGGAATGCTACATCC 60.541 57.143 0.00 0.00 41.22 3.51
803 804 1.412710 TCCACCGAGGAATGCTACATC 59.587 52.381 0.00 0.00 45.65 3.06
804 805 1.496060 TCCACCGAGGAATGCTACAT 58.504 50.000 0.00 0.00 45.65 2.29
805 806 2.985001 TCCACCGAGGAATGCTACA 58.015 52.632 0.00 0.00 45.65 2.74
813 814 1.676968 CAACCATGTCCACCGAGGA 59.323 57.895 0.00 0.00 46.75 3.71
814 815 2.040544 GCAACCATGTCCACCGAGG 61.041 63.158 0.00 0.00 39.47 4.63
815 816 1.003355 AGCAACCATGTCCACCGAG 60.003 57.895 0.00 0.00 0.00 4.63
816 817 1.003839 GAGCAACCATGTCCACCGA 60.004 57.895 0.00 0.00 0.00 4.69
817 818 2.040544 GGAGCAACCATGTCCACCG 61.041 63.158 0.00 0.00 38.79 4.94
818 819 1.678970 GGGAGCAACCATGTCCACC 60.679 63.158 2.09 0.00 41.20 4.61
819 820 1.074775 TGGGAGCAACCATGTCCAC 59.925 57.895 2.09 0.00 41.20 4.02
820 821 1.074775 GTGGGAGCAACCATGTCCA 59.925 57.895 2.53 0.00 43.59 4.02
821 822 2.040544 CGTGGGAGCAACCATGTCC 61.041 63.158 9.96 0.00 43.59 4.02
822 823 3.578456 CGTGGGAGCAACCATGTC 58.422 61.111 9.96 0.00 43.59 3.06
915 1276 3.400590 GGGCGACGACGAACACAC 61.401 66.667 12.29 0.00 42.66 3.82
1046 1411 1.009900 CGGGTATCTCGTGCTCGAC 60.010 63.158 6.80 0.00 38.88 4.20
1052 1417 2.025727 GACGCCGGGTATCTCGTG 59.974 66.667 2.18 0.00 35.12 4.35
1593 1964 3.240134 ATGCCGCTGACCTTGTCGT 62.240 57.895 0.00 0.00 34.95 4.34
1627 1998 2.712709 GGCTCTTTTCCCCAGAAGTAC 58.287 52.381 0.00 0.00 32.35 2.73
2096 7488 8.201464 TGTAATCAGAACTCAGAAACACACTTA 58.799 33.333 0.00 0.00 0.00 2.24
2107 7500 5.929697 TTGCAAGTGTAATCAGAACTCAG 57.070 39.130 0.00 0.00 0.00 3.35
2143 7537 2.050077 CACTCGCGTGCTCAGTGA 60.050 61.111 17.27 0.00 40.07 3.41
2161 7555 1.027357 CCGGCAATTGATTCAGAGGG 58.973 55.000 10.34 0.00 0.00 4.30
2202 9563 0.829990 TCCGGCTATGCAACTGATGA 59.170 50.000 0.00 0.00 0.00 2.92
2219 9580 0.678048 AGCAAGCCGGAGTTTGATCC 60.678 55.000 5.05 0.00 36.37 3.36
2225 9586 1.768684 TTCCTCAGCAAGCCGGAGTT 61.769 55.000 5.05 0.00 0.00 3.01
2523 10626 3.181399 TCCTATGTATGGGGGTAAGGAGG 60.181 52.174 0.00 0.00 0.00 4.30
2533 10636 7.157347 CGATCATATTCCATCCTATGTATGGG 58.843 42.308 2.45 0.00 43.52 4.00
2537 10640 5.070446 GGGCGATCATATTCCATCCTATGTA 59.930 44.000 0.00 0.00 0.00 2.29
3025 11300 3.494254 ACAGAAACCACCCCGCCA 61.494 61.111 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.