Multiple sequence alignment - TraesCS5A01G242400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G242400 chr5A 100.000 3503 0 0 1 3503 457568578 457565076 0.000000e+00 6469.0
1 TraesCS5A01G242400 chr5A 100.000 28 0 0 111 138 246832944 246832917 6.000000e-03 52.8
2 TraesCS5A01G242400 chr5D 92.939 2974 139 28 581 3501 355607220 355610175 0.000000e+00 4263.0
3 TraesCS5A01G242400 chr5D 79.695 197 34 5 2066 2259 493913480 493913673 1.700000e-28 137.0
4 TraesCS5A01G242400 chr5D 100.000 35 0 0 183 217 458867837 458867871 8.120000e-07 65.8
5 TraesCS5A01G242400 chr5B 93.344 1848 85 16 719 2533 420184501 420186343 0.000000e+00 2697.0
6 TraesCS5A01G242400 chr5B 79.487 195 38 2 2075 2268 610106890 610106697 1.700000e-28 137.0
7 TraesCS5A01G242400 chr5B 78.680 197 36 5 2075 2268 610281378 610281185 3.670000e-25 126.0
8 TraesCS5A01G242400 chr7A 78.468 1449 282 18 1039 2481 126367566 126366142 0.000000e+00 920.0
9 TraesCS5A01G242400 chr7A 78.495 1409 267 23 1039 2438 126195845 126197226 0.000000e+00 891.0
10 TraesCS5A01G242400 chr7B 78.834 1389 262 20 1039 2420 84765415 84764052 0.000000e+00 907.0
11 TraesCS5A01G242400 chr7B 77.824 1452 286 21 1039 2481 84701038 84702462 0.000000e+00 865.0
12 TraesCS5A01G242400 chr7B 79.587 436 82 4 1475 1906 84763118 84762686 4.390000e-79 305.0
13 TraesCS5A01G242400 chr7D 77.451 1326 261 26 1045 2361 123462138 123463434 0.000000e+00 758.0
14 TraesCS5A01G242400 chr7D 76.032 993 219 13 1391 2374 123484822 123483840 6.750000e-137 497.0
15 TraesCS5A01G242400 chr7D 78.774 212 39 6 2051 2259 123157847 123158055 1.700000e-28 137.0
16 TraesCS5A01G242400 chr7D 83.846 130 19 2 141 270 96598766 96598639 4.750000e-24 122.0
17 TraesCS5A01G242400 chr6D 83.206 131 21 1 141 271 138937882 138938011 6.140000e-23 119.0
18 TraesCS5A01G242400 chr1D 78.010 191 36 6 2072 2259 355669436 355669623 7.950000e-22 115.0
19 TraesCS5A01G242400 chr1B 82.576 132 21 2 141 271 158982241 158982371 7.950000e-22 115.0
20 TraesCS5A01G242400 chr1B 88.000 50 5 1 140 189 625593436 625593484 1.360000e-04 58.4
21 TraesCS5A01G242400 chr6B 82.443 131 22 1 141 271 335462848 335462977 2.860000e-21 113.0
22 TraesCS5A01G242400 chr2B 80.769 104 14 4 181 282 445261517 445261418 3.750000e-10 76.8
23 TraesCS5A01G242400 chr3B 95.122 41 1 1 137 177 122366517 122366478 2.920000e-06 63.9
24 TraesCS5A01G242400 chr3B 100.000 30 0 0 113 142 5367784 5367813 4.880000e-04 56.5
25 TraesCS5A01G242400 chr3B 100.000 28 0 0 111 138 5329534 5329561 6.000000e-03 52.8
26 TraesCS5A01G242400 chr6A 100.000 28 0 0 111 138 555363800 555363773 6.000000e-03 52.8
27 TraesCS5A01G242400 chr6A 100.000 28 0 0 111 138 555365797 555365770 6.000000e-03 52.8
28 TraesCS5A01G242400 chr2A 100.000 28 0 0 111 138 430587320 430587347 6.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G242400 chr5A 457565076 457568578 3502 True 6469 6469 100.0000 1 3503 1 chr5A.!!$R2 3502
1 TraesCS5A01G242400 chr5D 355607220 355610175 2955 False 4263 4263 92.9390 581 3501 1 chr5D.!!$F1 2920
2 TraesCS5A01G242400 chr5B 420184501 420186343 1842 False 2697 2697 93.3440 719 2533 1 chr5B.!!$F1 1814
3 TraesCS5A01G242400 chr7A 126366142 126367566 1424 True 920 920 78.4680 1039 2481 1 chr7A.!!$R1 1442
4 TraesCS5A01G242400 chr7A 126195845 126197226 1381 False 891 891 78.4950 1039 2438 1 chr7A.!!$F1 1399
5 TraesCS5A01G242400 chr7B 84701038 84702462 1424 False 865 865 77.8240 1039 2481 1 chr7B.!!$F1 1442
6 TraesCS5A01G242400 chr7B 84762686 84765415 2729 True 606 907 79.2105 1039 2420 2 chr7B.!!$R1 1381
7 TraesCS5A01G242400 chr7D 123462138 123463434 1296 False 758 758 77.4510 1045 2361 1 chr7D.!!$F2 1316
8 TraesCS5A01G242400 chr7D 123483840 123484822 982 True 497 497 76.0320 1391 2374 1 chr7D.!!$R2 983

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
471 472 0.038618 TGGATGACGGAACACAGTCG 60.039 55.0 0.00 0.0 40.05 4.18 F
493 494 0.106149 ACGCTTTGAGGGTCGAAGTT 59.894 50.0 5.92 0.0 39.52 2.66 F
514 515 0.179171 GTGACGCGCTTGCTAGTCTA 60.179 55.0 5.73 0.0 36.08 2.59 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1272 1310 1.579429 GTTGTCCATGTTGTCCGCC 59.421 57.895 0.0 0.0 0.00 6.13 R
2489 2556 2.011122 CAGGTATCACTCGGGGGTAT 57.989 55.000 0.0 0.0 0.00 2.73 R
2509 2576 4.209288 GCTACATGCTATAAACACACTCCG 59.791 45.833 0.0 0.0 38.95 4.63 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.330192 ATAGCGGGTGGATGGCAA 58.670 55.556 0.00 0.00 0.00 4.52
18 19 1.846261 ATAGCGGGTGGATGGCAAT 59.154 52.632 0.00 0.00 0.00 3.56
19 20 0.538057 ATAGCGGGTGGATGGCAATG 60.538 55.000 0.00 0.00 0.00 2.82
20 21 2.623094 TAGCGGGTGGATGGCAATGG 62.623 60.000 0.00 0.00 0.00 3.16
21 22 2.044053 CGGGTGGATGGCAATGGT 60.044 61.111 0.00 0.00 0.00 3.55
22 23 2.417257 CGGGTGGATGGCAATGGTG 61.417 63.158 0.00 0.00 0.00 4.17
23 24 2.059786 GGGTGGATGGCAATGGTGG 61.060 63.158 0.00 0.00 0.00 4.61
24 25 2.059786 GGTGGATGGCAATGGTGGG 61.060 63.158 0.00 0.00 0.00 4.61
25 26 2.364056 TGGATGGCAATGGTGGGC 60.364 61.111 0.00 0.00 0.00 5.36
26 27 2.042639 GGATGGCAATGGTGGGCT 60.043 61.111 0.00 0.00 0.00 5.19
27 28 2.428925 GGATGGCAATGGTGGGCTG 61.429 63.158 0.00 0.00 0.00 4.85
28 29 3.078836 ATGGCAATGGTGGGCTGC 61.079 61.111 0.00 0.00 35.28 5.25
29 30 3.908904 ATGGCAATGGTGGGCTGCA 62.909 57.895 0.50 0.00 37.83 4.41
30 31 3.766691 GGCAATGGTGGGCTGCAG 61.767 66.667 10.11 10.11 37.83 4.41
31 32 2.677524 GCAATGGTGGGCTGCAGA 60.678 61.111 20.43 0.00 36.09 4.26
32 33 2.056223 GCAATGGTGGGCTGCAGAT 61.056 57.895 20.43 0.00 36.09 2.90
33 34 1.813859 CAATGGTGGGCTGCAGATG 59.186 57.895 20.43 0.00 0.00 2.90
34 35 1.380785 AATGGTGGGCTGCAGATGG 60.381 57.895 20.43 0.00 0.00 3.51
35 36 1.866483 AATGGTGGGCTGCAGATGGA 61.866 55.000 20.43 0.00 0.00 3.41
36 37 1.652187 ATGGTGGGCTGCAGATGGAT 61.652 55.000 20.43 0.00 0.00 3.41
37 38 1.826921 GGTGGGCTGCAGATGGATG 60.827 63.158 20.43 0.00 0.00 3.51
38 39 1.826921 GTGGGCTGCAGATGGATGG 60.827 63.158 20.43 0.00 0.00 3.51
39 40 2.203451 GGGCTGCAGATGGATGGG 60.203 66.667 20.43 0.00 0.00 4.00
40 41 2.910994 GGCTGCAGATGGATGGGC 60.911 66.667 20.43 0.00 0.00 5.36
41 42 3.285215 GCTGCAGATGGATGGGCG 61.285 66.667 20.43 0.00 0.00 6.13
42 43 2.593725 CTGCAGATGGATGGGCGG 60.594 66.667 8.42 0.00 0.00 6.13
43 44 4.193893 TGCAGATGGATGGGCGGG 62.194 66.667 0.00 0.00 0.00 6.13
44 45 4.195334 GCAGATGGATGGGCGGGT 62.195 66.667 0.00 0.00 0.00 5.28
45 46 2.203252 CAGATGGATGGGCGGGTG 60.203 66.667 0.00 0.00 0.00 4.61
46 47 3.492353 AGATGGATGGGCGGGTGG 61.492 66.667 0.00 0.00 0.00 4.61
60 61 4.078516 GTGGCGCCGGAGTAGGTT 62.079 66.667 23.90 0.00 0.00 3.50
61 62 2.362760 TGGCGCCGGAGTAGGTTA 60.363 61.111 23.90 0.00 0.00 2.85
62 63 2.105729 GGCGCCGGAGTAGGTTAC 59.894 66.667 12.58 0.00 0.00 2.50
63 64 2.421399 GGCGCCGGAGTAGGTTACT 61.421 63.158 12.58 0.00 42.86 2.24
72 73 2.728922 GAGTAGGTTACTCGGCAATCG 58.271 52.381 0.91 0.00 44.90 3.34
73 74 1.202382 AGTAGGTTACTCGGCAATCGC 60.202 52.381 0.00 0.00 39.05 4.58
74 75 0.818938 TAGGTTACTCGGCAATCGCA 59.181 50.000 0.00 0.00 41.24 5.10
75 76 0.178068 AGGTTACTCGGCAATCGCAT 59.822 50.000 0.00 0.00 41.24 4.73
76 77 1.411246 AGGTTACTCGGCAATCGCATA 59.589 47.619 0.00 0.00 41.24 3.14
77 78 2.037251 AGGTTACTCGGCAATCGCATAT 59.963 45.455 0.00 0.00 41.24 1.78
78 79 2.412089 GGTTACTCGGCAATCGCATATC 59.588 50.000 0.00 0.00 41.24 1.63
79 80 3.057019 GTTACTCGGCAATCGCATATCA 58.943 45.455 0.00 0.00 41.24 2.15
80 81 2.462456 ACTCGGCAATCGCATATCAT 57.538 45.000 0.00 0.00 41.24 2.45
81 82 2.771089 ACTCGGCAATCGCATATCATT 58.229 42.857 0.00 0.00 41.24 2.57
82 83 2.481568 ACTCGGCAATCGCATATCATTG 59.518 45.455 0.00 0.00 41.24 2.82
83 84 2.738314 CTCGGCAATCGCATATCATTGA 59.262 45.455 0.00 0.00 41.24 2.57
84 85 3.337358 TCGGCAATCGCATATCATTGAT 58.663 40.909 4.28 4.28 41.24 2.57
85 86 3.125658 TCGGCAATCGCATATCATTGATG 59.874 43.478 9.46 0.00 41.24 3.07
86 87 3.120095 CGGCAATCGCATATCATTGATGT 60.120 43.478 9.46 0.00 41.24 3.06
87 88 4.093261 CGGCAATCGCATATCATTGATGTA 59.907 41.667 9.46 0.00 41.24 2.29
88 89 5.566623 GGCAATCGCATATCATTGATGTAG 58.433 41.667 9.46 1.33 41.24 2.74
89 90 5.026462 GCAATCGCATATCATTGATGTAGC 58.974 41.667 9.46 9.03 38.36 3.58
90 91 5.253335 CAATCGCATATCATTGATGTAGCG 58.747 41.667 23.96 23.96 44.66 4.26
91 92 2.667969 TCGCATATCATTGATGTAGCGC 59.332 45.455 24.59 0.00 43.19 5.92
92 93 2.533561 CGCATATCATTGATGTAGCGCG 60.534 50.000 20.82 16.00 37.43 6.86
93 94 2.667969 GCATATCATTGATGTAGCGCGA 59.332 45.455 12.10 0.00 0.00 5.87
94 95 3.482598 GCATATCATTGATGTAGCGCGAC 60.483 47.826 12.10 14.22 0.00 5.19
95 96 1.131771 ATCATTGATGTAGCGCGACG 58.868 50.000 12.10 0.49 0.00 5.12
96 97 0.099791 TCATTGATGTAGCGCGACGA 59.900 50.000 12.10 5.77 0.00 4.20
97 98 0.920664 CATTGATGTAGCGCGACGAA 59.079 50.000 12.10 8.82 0.00 3.85
98 99 0.921347 ATTGATGTAGCGCGACGAAC 59.079 50.000 12.10 9.83 0.00 3.95
99 100 1.074319 TTGATGTAGCGCGACGAACC 61.074 55.000 12.10 5.47 0.00 3.62
100 101 2.565394 GATGTAGCGCGACGAACCG 61.565 63.158 12.10 0.00 0.00 4.44
115 116 4.104143 CCGCCGTGGTGTCTTATC 57.896 61.111 0.00 0.00 0.00 1.75
116 117 1.515954 CCGCCGTGGTGTCTTATCT 59.484 57.895 0.00 0.00 0.00 1.98
117 118 0.527817 CCGCCGTGGTGTCTTATCTC 60.528 60.000 0.00 0.00 0.00 2.75
118 119 0.456221 CGCCGTGGTGTCTTATCTCT 59.544 55.000 0.00 0.00 0.00 3.10
119 120 1.674441 CGCCGTGGTGTCTTATCTCTA 59.326 52.381 0.00 0.00 0.00 2.43
120 121 2.541178 CGCCGTGGTGTCTTATCTCTAC 60.541 54.545 0.00 0.00 0.00 2.59
121 122 2.426024 GCCGTGGTGTCTTATCTCTACA 59.574 50.000 0.00 0.00 0.00 2.74
122 123 3.734293 GCCGTGGTGTCTTATCTCTACAC 60.734 52.174 0.00 0.00 42.17 2.90
123 124 3.442625 CCGTGGTGTCTTATCTCTACACA 59.557 47.826 7.10 0.00 44.18 3.72
124 125 4.082408 CCGTGGTGTCTTATCTCTACACAA 60.082 45.833 7.10 0.00 44.18 3.33
125 126 5.394224 CCGTGGTGTCTTATCTCTACACAAT 60.394 44.000 7.10 0.00 44.18 2.71
126 127 6.100004 CGTGGTGTCTTATCTCTACACAATT 58.900 40.000 7.10 0.00 44.18 2.32
127 128 7.255569 CGTGGTGTCTTATCTCTACACAATTA 58.744 38.462 7.10 0.00 44.18 1.40
128 129 7.921214 CGTGGTGTCTTATCTCTACACAATTAT 59.079 37.037 7.10 0.00 44.18 1.28
148 149 9.262472 CAATTATACTTCTAACTGTTTGAACGC 57.738 33.333 12.27 0.00 0.00 4.84
149 150 3.854286 ACTTCTAACTGTTTGAACGCG 57.146 42.857 3.53 3.53 0.00 6.01
150 151 2.542595 ACTTCTAACTGTTTGAACGCGG 59.457 45.455 12.47 6.70 0.00 6.46
151 152 2.512485 TCTAACTGTTTGAACGCGGA 57.488 45.000 12.47 0.00 0.00 5.54
152 153 2.400399 TCTAACTGTTTGAACGCGGAG 58.600 47.619 12.47 0.00 0.00 4.63
171 172 4.980805 GGTCGCGTGCACCAGGAA 62.981 66.667 12.15 0.00 33.63 3.36
172 173 3.414700 GTCGCGTGCACCAGGAAG 61.415 66.667 12.15 0.00 0.00 3.46
175 176 3.730761 GCGTGCACCAGGAAGCAG 61.731 66.667 12.15 7.38 42.14 4.24
176 177 3.730761 CGTGCACCAGGAAGCAGC 61.731 66.667 12.15 6.44 42.14 5.25
177 178 2.595463 GTGCACCAGGAAGCAGCA 60.595 61.111 5.22 2.12 42.14 4.41
178 179 2.595463 TGCACCAGGAAGCAGCAC 60.595 61.111 7.17 0.00 35.51 4.40
179 180 3.730761 GCACCAGGAAGCAGCACG 61.731 66.667 0.00 0.00 0.00 5.34
180 181 3.052082 CACCAGGAAGCAGCACGG 61.052 66.667 0.00 0.00 0.00 4.94
181 182 4.335647 ACCAGGAAGCAGCACGGG 62.336 66.667 0.00 0.00 0.00 5.28
203 204 4.421479 CGCTCTCTTGACCGGCGT 62.421 66.667 6.01 0.00 40.78 5.68
204 205 2.811317 GCTCTCTTGACCGGCGTG 60.811 66.667 6.01 0.00 0.00 5.34
205 206 2.811317 CTCTCTTGACCGGCGTGC 60.811 66.667 6.01 0.00 0.00 5.34
206 207 4.373116 TCTCTTGACCGGCGTGCC 62.373 66.667 6.01 0.00 0.00 5.01
218 219 2.701006 CGTGCCGCTTCAATACCG 59.299 61.111 0.00 0.00 0.00 4.02
219 220 1.807981 CGTGCCGCTTCAATACCGA 60.808 57.895 0.00 0.00 0.00 4.69
220 221 1.713830 GTGCCGCTTCAATACCGAC 59.286 57.895 0.00 0.00 0.00 4.79
221 222 1.017177 GTGCCGCTTCAATACCGACA 61.017 55.000 0.00 0.00 0.00 4.35
222 223 0.320858 TGCCGCTTCAATACCGACAA 60.321 50.000 0.00 0.00 0.00 3.18
223 224 0.373716 GCCGCTTCAATACCGACAAG 59.626 55.000 0.00 0.00 0.00 3.16
224 225 2.004583 CCGCTTCAATACCGACAAGA 57.995 50.000 0.00 0.00 0.00 3.02
225 226 1.927174 CCGCTTCAATACCGACAAGAG 59.073 52.381 0.00 0.00 0.00 2.85
226 227 2.607187 CGCTTCAATACCGACAAGAGT 58.393 47.619 0.00 0.00 0.00 3.24
227 228 2.345641 CGCTTCAATACCGACAAGAGTG 59.654 50.000 0.00 0.00 0.00 3.51
228 229 3.585862 GCTTCAATACCGACAAGAGTGA 58.414 45.455 0.00 0.00 0.00 3.41
229 230 4.184629 GCTTCAATACCGACAAGAGTGAT 58.815 43.478 0.00 0.00 0.00 3.06
230 231 5.348986 GCTTCAATACCGACAAGAGTGATA 58.651 41.667 0.00 0.00 0.00 2.15
231 232 5.460419 GCTTCAATACCGACAAGAGTGATAG 59.540 44.000 0.00 0.00 0.00 2.08
232 233 6.680625 GCTTCAATACCGACAAGAGTGATAGA 60.681 42.308 0.00 0.00 0.00 1.98
233 234 6.961360 TCAATACCGACAAGAGTGATAGAT 57.039 37.500 0.00 0.00 0.00 1.98
234 235 6.971602 TCAATACCGACAAGAGTGATAGATC 58.028 40.000 0.00 0.00 0.00 2.75
235 236 3.972950 ACCGACAAGAGTGATAGATCG 57.027 47.619 0.00 0.00 0.00 3.69
236 237 2.033550 ACCGACAAGAGTGATAGATCGC 59.966 50.000 0.00 0.00 37.57 4.58
237 238 2.302662 CGACAAGAGTGATAGATCGCG 58.697 52.381 0.00 0.00 41.94 5.87
238 239 2.286477 CGACAAGAGTGATAGATCGCGT 60.286 50.000 5.77 0.00 41.94 6.01
239 240 3.293262 GACAAGAGTGATAGATCGCGTC 58.707 50.000 5.77 2.98 41.94 5.19
240 241 2.946329 ACAAGAGTGATAGATCGCGTCT 59.054 45.455 5.77 11.14 41.94 4.18
241 242 3.242903 ACAAGAGTGATAGATCGCGTCTG 60.243 47.826 17.67 4.98 41.94 3.51
242 243 2.839975 AGAGTGATAGATCGCGTCTGA 58.160 47.619 17.67 0.00 41.94 3.27
243 244 3.407698 AGAGTGATAGATCGCGTCTGAT 58.592 45.455 17.67 0.00 41.94 2.90
244 245 3.435327 AGAGTGATAGATCGCGTCTGATC 59.565 47.826 17.67 9.01 44.13 2.92
245 246 3.142174 AGTGATAGATCGCGTCTGATCA 58.858 45.455 17.67 17.05 45.81 2.92
246 247 3.188254 AGTGATAGATCGCGTCTGATCAG 59.812 47.826 17.07 17.07 45.81 2.90
247 248 3.187432 GTGATAGATCGCGTCTGATCAGA 59.813 47.826 21.67 21.67 45.81 3.27
255 256 4.380986 TCTGATCAGACCGGGCAT 57.619 55.556 21.67 0.00 31.41 4.40
256 257 1.825341 TCTGATCAGACCGGGCATG 59.175 57.895 21.67 5.02 31.41 4.06
257 258 0.687427 TCTGATCAGACCGGGCATGA 60.687 55.000 21.67 11.40 31.41 3.07
258 259 0.178767 CTGATCAGACCGGGCATGAA 59.821 55.000 18.34 0.00 0.00 2.57
259 260 0.839277 TGATCAGACCGGGCATGAAT 59.161 50.000 11.69 0.00 0.00 2.57
260 261 1.233019 GATCAGACCGGGCATGAATG 58.767 55.000 11.69 0.00 0.00 2.67
271 272 3.598678 CATGAATGCAGCACTGACG 57.401 52.632 0.00 0.00 0.00 4.35
272 273 0.522705 CATGAATGCAGCACTGACGC 60.523 55.000 0.00 0.00 0.00 5.19
273 274 0.675837 ATGAATGCAGCACTGACGCT 60.676 50.000 0.00 0.00 45.21 5.07
274 275 1.293963 TGAATGCAGCACTGACGCTC 61.294 55.000 0.00 0.00 41.38 5.03
275 276 1.004080 AATGCAGCACTGACGCTCT 60.004 52.632 0.00 0.00 41.38 4.09
276 277 0.247460 AATGCAGCACTGACGCTCTA 59.753 50.000 0.00 0.00 41.38 2.43
277 278 0.179116 ATGCAGCACTGACGCTCTAG 60.179 55.000 0.00 0.00 41.38 2.43
278 279 1.244019 TGCAGCACTGACGCTCTAGA 61.244 55.000 0.81 0.00 41.38 2.43
279 280 0.525242 GCAGCACTGACGCTCTAGAG 60.525 60.000 15.85 15.85 41.38 2.43
288 289 2.254051 GCTCTAGAGCGGCGCTAG 59.746 66.667 36.55 28.57 45.29 3.42
289 290 2.254051 CTCTAGAGCGGCGCTAGC 59.746 66.667 36.55 23.56 39.88 3.42
300 301 1.638467 GCGCTAGCCATTTCAGACG 59.362 57.895 9.66 0.00 37.42 4.18
301 302 0.806102 GCGCTAGCCATTTCAGACGA 60.806 55.000 9.66 0.00 37.42 4.20
302 303 1.203928 CGCTAGCCATTTCAGACGAG 58.796 55.000 9.66 0.00 0.00 4.18
303 304 1.202302 CGCTAGCCATTTCAGACGAGA 60.202 52.381 9.66 0.00 0.00 4.04
304 305 2.735444 CGCTAGCCATTTCAGACGAGAA 60.735 50.000 9.66 0.00 0.00 2.87
305 306 2.863137 GCTAGCCATTTCAGACGAGAAG 59.137 50.000 2.29 0.00 0.00 2.85
306 307 1.731720 AGCCATTTCAGACGAGAAGC 58.268 50.000 0.00 0.00 0.00 3.86
317 318 4.821589 GAGAAGCGTGCGGGGGAG 62.822 72.222 0.00 0.00 0.00 4.30
319 320 4.388499 GAAGCGTGCGGGGGAGAA 62.388 66.667 0.00 0.00 0.00 2.87
320 321 4.394712 AAGCGTGCGGGGGAGAAG 62.395 66.667 0.00 0.00 0.00 2.85
324 325 4.410400 GTGCGGGGGAGAAGGGTG 62.410 72.222 0.00 0.00 0.00 4.61
328 329 4.695791 GGGGGAGAAGGGTGGGGT 62.696 72.222 0.00 0.00 0.00 4.95
329 330 3.339093 GGGGAGAAGGGTGGGGTG 61.339 72.222 0.00 0.00 0.00 4.61
330 331 3.339093 GGGAGAAGGGTGGGGTGG 61.339 72.222 0.00 0.00 0.00 4.61
331 332 3.339093 GGAGAAGGGTGGGGTGGG 61.339 72.222 0.00 0.00 0.00 4.61
332 333 4.048470 GAGAAGGGTGGGGTGGGC 62.048 72.222 0.00 0.00 0.00 5.36
333 334 4.617595 AGAAGGGTGGGGTGGGCT 62.618 66.667 0.00 0.00 0.00 5.19
334 335 2.612746 GAAGGGTGGGGTGGGCTA 60.613 66.667 0.00 0.00 0.00 3.93
335 336 2.614013 AAGGGTGGGGTGGGCTAG 60.614 66.667 0.00 0.00 0.00 3.42
336 337 4.760220 AGGGTGGGGTGGGCTAGG 62.760 72.222 0.00 0.00 0.00 3.02
341 342 3.429580 GGGGTGGGCTAGGGCAAT 61.430 66.667 0.00 0.00 40.87 3.56
342 343 2.195956 GGGTGGGCTAGGGCAATC 59.804 66.667 0.00 0.00 40.87 2.67
343 344 2.689691 GGGTGGGCTAGGGCAATCA 61.690 63.158 0.00 0.00 40.87 2.57
344 345 1.152881 GGTGGGCTAGGGCAATCAG 60.153 63.158 0.00 0.00 40.87 2.90
345 346 1.152881 GTGGGCTAGGGCAATCAGG 60.153 63.158 0.00 0.00 40.87 3.86
346 347 1.307778 TGGGCTAGGGCAATCAGGA 60.308 57.895 0.00 0.00 40.87 3.86
347 348 0.918799 TGGGCTAGGGCAATCAGGAA 60.919 55.000 0.00 0.00 40.87 3.36
348 349 0.466372 GGGCTAGGGCAATCAGGAAC 60.466 60.000 0.00 0.00 40.87 3.62
349 350 0.815615 GGCTAGGGCAATCAGGAACG 60.816 60.000 0.00 0.00 40.87 3.95
350 351 0.178068 GCTAGGGCAATCAGGAACGA 59.822 55.000 0.00 0.00 38.54 3.85
351 352 1.406887 GCTAGGGCAATCAGGAACGAA 60.407 52.381 0.00 0.00 38.54 3.85
352 353 2.939640 GCTAGGGCAATCAGGAACGAAA 60.940 50.000 0.00 0.00 38.54 3.46
353 354 2.286365 AGGGCAATCAGGAACGAAAA 57.714 45.000 0.00 0.00 0.00 2.29
354 355 2.807676 AGGGCAATCAGGAACGAAAAT 58.192 42.857 0.00 0.00 0.00 1.82
355 356 2.493278 AGGGCAATCAGGAACGAAAATG 59.507 45.455 0.00 0.00 0.00 2.32
356 357 2.417243 GGGCAATCAGGAACGAAAATGG 60.417 50.000 0.00 0.00 0.00 3.16
357 358 2.262211 GCAATCAGGAACGAAAATGGC 58.738 47.619 0.00 0.00 0.00 4.40
358 359 2.352617 GCAATCAGGAACGAAAATGGCA 60.353 45.455 0.00 0.00 0.00 4.92
359 360 3.504863 CAATCAGGAACGAAAATGGCAG 58.495 45.455 0.00 0.00 0.00 4.85
360 361 0.881118 TCAGGAACGAAAATGGCAGC 59.119 50.000 0.00 0.00 0.00 5.25
361 362 0.597568 CAGGAACGAAAATGGCAGCA 59.402 50.000 0.00 0.00 0.00 4.41
362 363 0.883833 AGGAACGAAAATGGCAGCAG 59.116 50.000 0.00 0.00 0.00 4.24
363 364 0.598065 GGAACGAAAATGGCAGCAGT 59.402 50.000 0.00 0.00 0.00 4.40
364 365 1.401539 GGAACGAAAATGGCAGCAGTC 60.402 52.381 0.00 0.00 0.00 3.51
365 366 0.598065 AACGAAAATGGCAGCAGTCC 59.402 50.000 0.00 0.00 0.00 3.85
366 367 1.135315 CGAAAATGGCAGCAGTCCG 59.865 57.895 0.00 0.00 0.00 4.79
367 368 1.508088 GAAAATGGCAGCAGTCCGG 59.492 57.895 0.00 0.00 0.00 5.14
368 369 0.960364 GAAAATGGCAGCAGTCCGGA 60.960 55.000 0.00 0.00 0.00 5.14
369 370 1.244019 AAAATGGCAGCAGTCCGGAC 61.244 55.000 27.67 27.67 0.00 4.79
370 371 2.410322 AAATGGCAGCAGTCCGGACA 62.410 55.000 35.00 14.25 0.00 4.02
371 372 3.612247 ATGGCAGCAGTCCGGACAC 62.612 63.158 35.00 25.77 26.12 3.67
374 375 4.662961 CAGCAGTCCGGACACGCA 62.663 66.667 35.99 2.97 39.22 5.24
375 376 4.664677 AGCAGTCCGGACACGCAC 62.665 66.667 35.99 21.96 39.22 5.34
376 377 4.961511 GCAGTCCGGACACGCACA 62.962 66.667 35.00 0.00 39.22 4.57
377 378 2.279851 CAGTCCGGACACGCACAA 60.280 61.111 35.00 0.00 39.22 3.33
378 379 1.885388 CAGTCCGGACACGCACAAA 60.885 57.895 35.00 0.00 39.22 2.83
379 380 1.153329 AGTCCGGACACGCACAAAA 60.153 52.632 35.00 0.00 39.22 2.44
380 381 1.010462 GTCCGGACACGCACAAAAC 60.010 57.895 29.75 0.00 39.22 2.43
381 382 2.181521 TCCGGACACGCACAAAACC 61.182 57.895 0.00 0.00 39.22 3.27
382 383 2.330041 CGGACACGCACAAAACCC 59.670 61.111 0.00 0.00 0.00 4.11
383 384 2.184167 CGGACACGCACAAAACCCT 61.184 57.895 0.00 0.00 0.00 4.34
384 385 1.652563 GGACACGCACAAAACCCTC 59.347 57.895 0.00 0.00 0.00 4.30
385 386 1.652563 GACACGCACAAAACCCTCC 59.347 57.895 0.00 0.00 0.00 4.30
386 387 1.077357 ACACGCACAAAACCCTCCA 60.077 52.632 0.00 0.00 0.00 3.86
387 388 0.467290 ACACGCACAAAACCCTCCAT 60.467 50.000 0.00 0.00 0.00 3.41
388 389 0.673437 CACGCACAAAACCCTCCATT 59.327 50.000 0.00 0.00 0.00 3.16
389 390 1.068434 CACGCACAAAACCCTCCATTT 59.932 47.619 0.00 0.00 0.00 2.32
390 391 1.760029 ACGCACAAAACCCTCCATTTT 59.240 42.857 0.00 0.00 0.00 1.82
397 398 3.744238 AAACCCTCCATTTTGTTTCCG 57.256 42.857 0.00 0.00 0.00 4.30
398 399 1.627864 ACCCTCCATTTTGTTTCCGG 58.372 50.000 0.00 0.00 0.00 5.14
399 400 1.133294 ACCCTCCATTTTGTTTCCGGT 60.133 47.619 0.00 0.00 0.00 5.28
400 401 1.967779 CCCTCCATTTTGTTTCCGGTT 59.032 47.619 0.00 0.00 0.00 4.44
401 402 2.367241 CCCTCCATTTTGTTTCCGGTTT 59.633 45.455 0.00 0.00 0.00 3.27
402 403 3.389221 CCTCCATTTTGTTTCCGGTTTG 58.611 45.455 0.00 0.00 0.00 2.93
403 404 3.181470 CCTCCATTTTGTTTCCGGTTTGT 60.181 43.478 0.00 0.00 0.00 2.83
404 405 3.786635 TCCATTTTGTTTCCGGTTTGTG 58.213 40.909 0.00 0.00 0.00 3.33
405 406 2.286563 CCATTTTGTTTCCGGTTTGTGC 59.713 45.455 0.00 0.00 0.00 4.57
406 407 1.630148 TTTTGTTTCCGGTTTGTGCG 58.370 45.000 0.00 0.00 0.00 5.34
407 408 0.809385 TTTGTTTCCGGTTTGTGCGA 59.191 45.000 0.00 0.00 0.00 5.10
408 409 0.809385 TTGTTTCCGGTTTGTGCGAA 59.191 45.000 0.00 0.00 0.00 4.70
409 410 0.809385 TGTTTCCGGTTTGTGCGAAA 59.191 45.000 0.00 0.00 0.00 3.46
410 411 1.201647 TGTTTCCGGTTTGTGCGAAAA 59.798 42.857 0.00 0.00 0.00 2.29
411 412 2.260481 GTTTCCGGTTTGTGCGAAAAA 58.740 42.857 0.00 0.00 0.00 1.94
412 413 2.861335 GTTTCCGGTTTGTGCGAAAAAT 59.139 40.909 0.00 0.00 0.00 1.82
413 414 2.873133 TCCGGTTTGTGCGAAAAATT 57.127 40.000 0.00 0.00 0.00 1.82
414 415 2.464865 TCCGGTTTGTGCGAAAAATTG 58.535 42.857 0.00 0.00 0.00 2.32
415 416 2.159226 TCCGGTTTGTGCGAAAAATTGT 60.159 40.909 0.00 0.00 0.00 2.71
416 417 3.066342 TCCGGTTTGTGCGAAAAATTGTA 59.934 39.130 0.00 0.00 0.00 2.41
417 418 3.984633 CCGGTTTGTGCGAAAAATTGTAT 59.015 39.130 0.00 0.00 0.00 2.29
418 419 4.089351 CCGGTTTGTGCGAAAAATTGTATC 59.911 41.667 0.00 0.00 0.00 2.24
419 420 4.089351 CGGTTTGTGCGAAAAATTGTATCC 59.911 41.667 0.00 0.00 0.00 2.59
420 421 4.089351 GGTTTGTGCGAAAAATTGTATCCG 59.911 41.667 0.00 0.00 0.00 4.18
421 422 2.857618 TGTGCGAAAAATTGTATCCGC 58.142 42.857 0.00 0.00 42.52 5.54
423 424 2.857618 TGCGAAAAATTGTATCCGCAC 58.142 42.857 0.00 0.00 46.03 5.34
424 425 2.226674 TGCGAAAAATTGTATCCGCACA 59.773 40.909 0.00 0.00 46.03 4.57
425 426 2.845967 GCGAAAAATTGTATCCGCACAG 59.154 45.455 0.00 0.00 41.89 3.66
426 427 2.845967 CGAAAAATTGTATCCGCACAGC 59.154 45.455 0.00 0.00 0.00 4.40
427 428 3.426159 CGAAAAATTGTATCCGCACAGCT 60.426 43.478 0.00 0.00 0.00 4.24
428 429 3.492421 AAAATTGTATCCGCACAGCTG 57.508 42.857 13.48 13.48 0.00 4.24
429 430 2.401583 AATTGTATCCGCACAGCTGA 57.598 45.000 23.35 0.00 0.00 4.26
430 431 2.401583 ATTGTATCCGCACAGCTGAA 57.598 45.000 23.35 0.19 0.00 3.02
431 432 1.438651 TTGTATCCGCACAGCTGAAC 58.561 50.000 23.35 10.77 0.00 3.18
432 433 0.735978 TGTATCCGCACAGCTGAACG 60.736 55.000 23.35 21.87 0.00 3.95
433 434 1.153647 TATCCGCACAGCTGAACGG 60.154 57.895 32.37 32.37 46.97 4.44
436 437 3.414700 CGCACAGCTGAACGGACC 61.415 66.667 23.35 0.00 0.00 4.46
437 438 3.414700 GCACAGCTGAACGGACCG 61.415 66.667 23.35 13.61 0.00 4.79
438 439 2.338620 CACAGCTGAACGGACCGA 59.661 61.111 23.35 0.00 0.00 4.69
439 440 1.079819 CACAGCTGAACGGACCGAT 60.080 57.895 23.35 9.21 0.00 4.18
440 441 0.172578 CACAGCTGAACGGACCGATA 59.827 55.000 23.35 5.09 0.00 2.92
441 442 1.112113 ACAGCTGAACGGACCGATAT 58.888 50.000 23.35 6.06 0.00 1.63
442 443 2.034179 CACAGCTGAACGGACCGATATA 59.966 50.000 23.35 0.27 0.00 0.86
443 444 2.293677 ACAGCTGAACGGACCGATATAG 59.706 50.000 23.35 11.87 0.00 1.31
444 445 2.293677 CAGCTGAACGGACCGATATAGT 59.706 50.000 23.38 0.00 0.00 2.12
445 446 3.501062 CAGCTGAACGGACCGATATAGTA 59.499 47.826 23.38 0.00 0.00 1.82
446 447 4.156190 CAGCTGAACGGACCGATATAGTAT 59.844 45.833 23.38 1.97 0.00 2.12
447 448 4.395542 AGCTGAACGGACCGATATAGTATC 59.604 45.833 23.38 5.92 0.00 2.24
448 449 4.727162 GCTGAACGGACCGATATAGTATCG 60.727 50.000 23.38 11.34 40.86 2.92
449 450 4.318332 TGAACGGACCGATATAGTATCGT 58.682 43.478 23.38 6.45 39.67 3.73
450 451 4.152938 TGAACGGACCGATATAGTATCGTG 59.847 45.833 23.38 10.68 39.67 4.35
451 452 3.668447 ACGGACCGATATAGTATCGTGT 58.332 45.455 23.38 13.06 39.67 4.49
452 453 4.067896 ACGGACCGATATAGTATCGTGTT 58.932 43.478 23.38 2.95 39.67 3.32
453 454 4.083643 ACGGACCGATATAGTATCGTGTTG 60.084 45.833 23.38 12.02 39.67 3.33
454 455 4.670992 CGGACCGATATAGTATCGTGTTGG 60.671 50.000 8.64 5.28 39.67 3.77
455 456 4.456911 GGACCGATATAGTATCGTGTTGGA 59.543 45.833 15.62 0.00 39.67 3.53
456 457 5.125097 GGACCGATATAGTATCGTGTTGGAT 59.875 44.000 15.62 0.00 39.67 3.41
457 458 5.950883 ACCGATATAGTATCGTGTTGGATG 58.049 41.667 15.62 3.59 39.67 3.51
458 459 5.708697 ACCGATATAGTATCGTGTTGGATGA 59.291 40.000 15.62 0.00 39.67 2.92
459 460 6.028368 CCGATATAGTATCGTGTTGGATGAC 58.972 44.000 15.62 0.00 39.67 3.06
460 461 5.733109 CGATATAGTATCGTGTTGGATGACG 59.267 44.000 10.36 0.00 36.84 4.35
461 462 2.579207 AGTATCGTGTTGGATGACGG 57.421 50.000 0.00 0.00 36.23 4.79
462 463 2.097036 AGTATCGTGTTGGATGACGGA 58.903 47.619 0.00 0.00 36.23 4.69
463 464 2.494471 AGTATCGTGTTGGATGACGGAA 59.506 45.455 0.00 0.00 36.23 4.30
464 465 1.722011 ATCGTGTTGGATGACGGAAC 58.278 50.000 0.00 0.00 36.23 3.62
465 466 0.389757 TCGTGTTGGATGACGGAACA 59.610 50.000 0.00 0.00 36.23 3.18
466 467 0.511221 CGTGTTGGATGACGGAACAC 59.489 55.000 0.00 0.00 43.91 3.32
467 468 1.588674 GTGTTGGATGACGGAACACA 58.411 50.000 0.00 0.00 45.74 3.72
468 469 1.531149 GTGTTGGATGACGGAACACAG 59.469 52.381 0.00 0.00 45.74 3.66
469 470 1.140052 TGTTGGATGACGGAACACAGT 59.860 47.619 0.00 0.00 0.00 3.55
470 471 1.798813 GTTGGATGACGGAACACAGTC 59.201 52.381 0.00 0.00 37.85 3.51
471 472 0.038618 TGGATGACGGAACACAGTCG 60.039 55.000 0.00 0.00 40.05 4.18
472 473 0.736325 GGATGACGGAACACAGTCGG 60.736 60.000 0.00 0.00 40.05 4.79
473 474 0.736325 GATGACGGAACACAGTCGGG 60.736 60.000 0.00 0.00 40.05 5.14
474 475 1.183030 ATGACGGAACACAGTCGGGA 61.183 55.000 0.00 0.00 40.05 5.14
475 476 1.372623 GACGGAACACAGTCGGGAC 60.373 63.158 0.00 0.00 0.00 4.46
490 491 4.667420 GACGCTTTGAGGGTCGAA 57.333 55.556 9.00 0.00 45.91 3.71
491 492 2.446341 GACGCTTTGAGGGTCGAAG 58.554 57.895 9.00 0.17 45.91 3.79
492 493 0.319641 GACGCTTTGAGGGTCGAAGT 60.320 55.000 9.00 0.00 45.91 3.01
493 494 0.106149 ACGCTTTGAGGGTCGAAGTT 59.894 50.000 5.92 0.00 39.52 2.66
494 495 0.512952 CGCTTTGAGGGTCGAAGTTG 59.487 55.000 5.92 0.00 39.52 3.16
495 496 0.875059 GCTTTGAGGGTCGAAGTTGG 59.125 55.000 5.92 0.00 39.52 3.77
496 497 1.814248 GCTTTGAGGGTCGAAGTTGGT 60.814 52.381 5.92 0.00 39.52 3.67
497 498 1.873591 CTTTGAGGGTCGAAGTTGGTG 59.126 52.381 0.00 0.00 34.04 4.17
498 499 1.124780 TTGAGGGTCGAAGTTGGTGA 58.875 50.000 0.00 0.00 0.00 4.02
499 500 0.391597 TGAGGGTCGAAGTTGGTGAC 59.608 55.000 0.00 0.00 0.00 3.67
500 501 0.666577 GAGGGTCGAAGTTGGTGACG 60.667 60.000 0.00 0.00 33.45 4.35
501 502 2.315386 GGGTCGAAGTTGGTGACGC 61.315 63.158 0.00 0.00 38.20 5.19
502 503 2.654912 GGTCGAAGTTGGTGACGCG 61.655 63.158 3.53 3.53 33.45 6.01
503 504 3.033764 TCGAAGTTGGTGACGCGC 61.034 61.111 5.73 0.00 33.14 6.86
504 505 3.036084 CGAAGTTGGTGACGCGCT 61.036 61.111 5.73 0.00 0.00 5.92
505 506 2.594962 CGAAGTTGGTGACGCGCTT 61.595 57.895 5.73 0.00 0.00 4.68
506 507 1.082756 GAAGTTGGTGACGCGCTTG 60.083 57.895 5.73 0.00 0.00 4.01
507 508 3.181169 AAGTTGGTGACGCGCTTGC 62.181 57.895 5.73 0.00 0.00 4.01
508 509 3.649986 GTTGGTGACGCGCTTGCT 61.650 61.111 5.73 0.00 36.08 3.91
509 510 2.029815 TTGGTGACGCGCTTGCTA 59.970 55.556 5.73 0.00 36.08 3.49
510 511 2.027073 TTGGTGACGCGCTTGCTAG 61.027 57.895 5.73 0.00 36.08 3.42
511 512 2.432628 GGTGACGCGCTTGCTAGT 60.433 61.111 5.73 0.00 36.08 2.57
512 513 2.445438 GGTGACGCGCTTGCTAGTC 61.445 63.158 5.73 4.73 36.08 2.59
513 514 1.444553 GTGACGCGCTTGCTAGTCT 60.445 57.895 5.73 0.00 36.08 3.24
514 515 0.179171 GTGACGCGCTTGCTAGTCTA 60.179 55.000 5.73 0.00 36.08 2.59
515 516 0.524414 TGACGCGCTTGCTAGTCTAA 59.476 50.000 5.73 0.00 36.08 2.10
516 517 1.134367 TGACGCGCTTGCTAGTCTAAT 59.866 47.619 5.73 0.00 36.08 1.73
517 518 2.194271 GACGCGCTTGCTAGTCTAATT 58.806 47.619 5.73 0.00 36.08 1.40
518 519 2.603560 GACGCGCTTGCTAGTCTAATTT 59.396 45.455 5.73 0.00 36.08 1.82
519 520 3.777478 ACGCGCTTGCTAGTCTAATTTA 58.223 40.909 5.73 0.00 36.08 1.40
520 521 3.550678 ACGCGCTTGCTAGTCTAATTTAC 59.449 43.478 5.73 0.00 36.08 2.01
521 522 3.797256 CGCGCTTGCTAGTCTAATTTACT 59.203 43.478 5.56 0.00 36.08 2.24
522 523 4.085517 CGCGCTTGCTAGTCTAATTTACTC 60.086 45.833 5.56 0.00 36.08 2.59
523 524 4.209495 GCGCTTGCTAGTCTAATTTACTCC 59.791 45.833 0.00 0.00 35.07 3.85
524 525 4.745620 CGCTTGCTAGTCTAATTTACTCCC 59.254 45.833 0.00 0.00 0.00 4.30
525 526 5.671493 GCTTGCTAGTCTAATTTACTCCCA 58.329 41.667 0.00 0.00 0.00 4.37
526 527 5.524281 GCTTGCTAGTCTAATTTACTCCCAC 59.476 44.000 0.00 0.00 0.00 4.61
527 528 6.630638 GCTTGCTAGTCTAATTTACTCCCACT 60.631 42.308 0.00 0.00 0.00 4.00
528 529 7.417570 GCTTGCTAGTCTAATTTACTCCCACTA 60.418 40.741 0.00 0.00 0.00 2.74
529 530 8.548880 TTGCTAGTCTAATTTACTCCCACTAT 57.451 34.615 0.00 0.00 0.00 2.12
530 531 7.952671 TGCTAGTCTAATTTACTCCCACTATG 58.047 38.462 0.00 0.00 0.00 2.23
531 532 7.563924 TGCTAGTCTAATTTACTCCCACTATGT 59.436 37.037 0.00 0.00 0.00 2.29
532 533 9.075678 GCTAGTCTAATTTACTCCCACTATGTA 57.924 37.037 0.00 0.00 0.00 2.29
535 536 8.368668 AGTCTAATTTACTCCCACTATGTATGC 58.631 37.037 0.00 0.00 0.00 3.14
536 537 7.603024 GTCTAATTTACTCCCACTATGTATGCC 59.397 40.741 0.00 0.00 0.00 4.40
537 538 5.904984 ATTTACTCCCACTATGTATGCCA 57.095 39.130 0.00 0.00 0.00 4.92
538 539 5.702065 TTTACTCCCACTATGTATGCCAA 57.298 39.130 0.00 0.00 0.00 4.52
539 540 3.845781 ACTCCCACTATGTATGCCAAG 57.154 47.619 0.00 0.00 0.00 3.61
540 541 2.439507 ACTCCCACTATGTATGCCAAGG 59.560 50.000 0.00 0.00 0.00 3.61
541 542 2.439507 CTCCCACTATGTATGCCAAGGT 59.560 50.000 0.00 0.00 0.00 3.50
542 543 2.172505 TCCCACTATGTATGCCAAGGTG 59.827 50.000 0.00 0.00 32.74 4.00
543 544 2.172505 CCCACTATGTATGCCAAGGTGA 59.827 50.000 0.00 0.00 33.95 4.02
544 545 3.181440 CCCACTATGTATGCCAAGGTGAT 60.181 47.826 0.00 0.00 33.95 3.06
545 546 4.464008 CCACTATGTATGCCAAGGTGATT 58.536 43.478 0.00 0.00 33.95 2.57
546 547 4.276678 CCACTATGTATGCCAAGGTGATTG 59.723 45.833 0.00 0.00 38.74 2.67
547 548 4.883585 CACTATGTATGCCAAGGTGATTGT 59.116 41.667 0.00 0.00 37.17 2.71
548 549 6.054941 CACTATGTATGCCAAGGTGATTGTA 58.945 40.000 0.00 0.00 37.17 2.41
549 550 6.542005 CACTATGTATGCCAAGGTGATTGTAA 59.458 38.462 0.00 0.00 37.17 2.41
550 551 7.229306 CACTATGTATGCCAAGGTGATTGTAAT 59.771 37.037 0.00 0.00 37.17 1.89
551 552 5.833406 TGTATGCCAAGGTGATTGTAATG 57.167 39.130 0.00 0.00 37.17 1.90
552 553 3.806625 ATGCCAAGGTGATTGTAATGC 57.193 42.857 0.00 0.00 37.17 3.56
553 554 2.523245 TGCCAAGGTGATTGTAATGCA 58.477 42.857 0.00 0.00 37.17 3.96
554 555 2.230992 TGCCAAGGTGATTGTAATGCAC 59.769 45.455 0.00 0.00 37.17 4.57
559 560 3.004752 GGTGATTGTAATGCACCTCCT 57.995 47.619 0.00 0.00 46.56 3.69
560 561 4.150897 GGTGATTGTAATGCACCTCCTA 57.849 45.455 0.00 0.00 46.56 2.94
561 562 4.718961 GGTGATTGTAATGCACCTCCTAT 58.281 43.478 0.00 0.00 46.56 2.57
562 563 4.757149 GGTGATTGTAATGCACCTCCTATC 59.243 45.833 0.00 0.00 46.56 2.08
563 564 5.455326 GGTGATTGTAATGCACCTCCTATCT 60.455 44.000 0.00 0.00 46.56 1.98
564 565 6.239600 GGTGATTGTAATGCACCTCCTATCTA 60.240 42.308 0.00 0.00 46.56 1.98
565 566 7.217200 GTGATTGTAATGCACCTCCTATCTAA 58.783 38.462 0.00 0.00 0.00 2.10
566 567 7.880195 GTGATTGTAATGCACCTCCTATCTAAT 59.120 37.037 0.00 0.00 0.00 1.73
567 568 7.879677 TGATTGTAATGCACCTCCTATCTAATG 59.120 37.037 0.00 0.00 0.00 1.90
568 569 6.994421 TGTAATGCACCTCCTATCTAATGA 57.006 37.500 0.00 0.00 0.00 2.57
569 570 7.373617 TGTAATGCACCTCCTATCTAATGAA 57.626 36.000 0.00 0.00 0.00 2.57
570 571 7.801104 TGTAATGCACCTCCTATCTAATGAAA 58.199 34.615 0.00 0.00 0.00 2.69
571 572 7.933577 TGTAATGCACCTCCTATCTAATGAAAG 59.066 37.037 0.00 0.00 0.00 2.62
572 573 4.708177 TGCACCTCCTATCTAATGAAAGC 58.292 43.478 0.00 0.00 0.00 3.51
573 574 3.743396 GCACCTCCTATCTAATGAAAGCG 59.257 47.826 0.00 0.00 0.00 4.68
574 575 4.740934 GCACCTCCTATCTAATGAAAGCGT 60.741 45.833 0.00 0.00 0.00 5.07
575 576 5.360591 CACCTCCTATCTAATGAAAGCGTT 58.639 41.667 0.00 0.00 0.00 4.84
576 577 5.817816 CACCTCCTATCTAATGAAAGCGTTT 59.182 40.000 0.00 0.00 0.00 3.60
577 578 6.018669 CACCTCCTATCTAATGAAAGCGTTTC 60.019 42.308 4.24 4.24 40.08 2.78
578 579 6.127026 ACCTCCTATCTAATGAAAGCGTTTCT 60.127 38.462 10.41 0.00 40.32 2.52
579 580 6.763610 CCTCCTATCTAATGAAAGCGTTTCTT 59.236 38.462 10.41 3.68 40.32 2.52
622 623 6.129062 CCGATTAGCGATCTTAGTCAAATGAC 60.129 42.308 5.40 5.40 44.57 3.06
674 675 2.515523 GCACATGCGGGCATCTCT 60.516 61.111 2.58 0.00 33.90 3.10
938 941 5.628193 TCTGTCGACGTTCTTTAAATCACTC 59.372 40.000 11.62 0.00 0.00 3.51
1003 1011 4.101448 GCCAGGAGCCCACGATGT 62.101 66.667 0.00 0.00 34.35 3.06
1062 1100 1.210931 CTTCGTGTTCGTCCCGCTA 59.789 57.895 0.00 0.00 38.33 4.26
1119 1157 2.281970 CTGCTGCTGGCCACTCAA 60.282 61.111 0.00 0.00 40.92 3.02
1291 1329 1.579429 GCGGACAACATGGACAACC 59.421 57.895 0.00 0.00 0.00 3.77
1548 1611 1.615107 GCGTGCTCGACTACAACCAC 61.615 60.000 13.13 0.00 39.71 4.16
2290 2357 2.548707 CCAGTGATGTACCGGATGGATG 60.549 54.545 9.46 0.00 39.21 3.51
2494 2561 2.112815 GGCGCCACACAAGATACCC 61.113 63.158 24.80 0.00 0.00 3.69
2509 2576 0.757935 TACCCCCGAGTGATACCTGC 60.758 60.000 0.00 0.00 0.00 4.85
2511 2578 2.417516 CCCGAGTGATACCTGCGG 59.582 66.667 0.00 0.00 41.53 5.69
2574 2645 1.923356 AATGCCGTTCCAATCAAGGT 58.077 45.000 0.00 0.00 0.00 3.50
2647 2897 4.775058 TTTTATCAATGTGGAACGGTGG 57.225 40.909 0.00 0.00 42.39 4.61
2650 2900 1.890876 TCAATGTGGAACGGTGGAAG 58.109 50.000 0.00 0.00 42.39 3.46
2651 2901 0.881118 CAATGTGGAACGGTGGAAGG 59.119 55.000 0.00 0.00 42.39 3.46
2652 2902 0.893727 AATGTGGAACGGTGGAAGGC 60.894 55.000 0.00 0.00 42.39 4.35
2653 2903 1.779061 ATGTGGAACGGTGGAAGGCT 61.779 55.000 0.00 0.00 42.39 4.58
2656 2906 0.766131 TGGAACGGTGGAAGGCTTTA 59.234 50.000 0.00 0.00 0.00 1.85
2657 2907 1.271163 TGGAACGGTGGAAGGCTTTAG 60.271 52.381 0.00 0.00 0.00 1.85
2660 2910 0.321653 ACGGTGGAAGGCTTTAGCAG 60.322 55.000 0.00 3.65 44.36 4.24
2663 2913 2.087646 GGTGGAAGGCTTTAGCAGAAG 58.912 52.381 0.00 0.00 44.36 2.85
2704 3241 7.041848 TGAGATTATTAGAATTGGCATGTGACG 60.042 37.037 0.00 0.00 0.00 4.35
2730 3267 6.347888 CGACGGTATTTGGTTGTTTGTATTCT 60.348 38.462 0.00 0.00 0.00 2.40
2788 3325 4.333649 CAGGATGTTCTAATGTTCGTGCAT 59.666 41.667 0.00 0.00 0.00 3.96
2791 3328 4.661993 TGTTCTAATGTTCGTGCATGAC 57.338 40.909 8.48 4.90 0.00 3.06
2798 3335 4.621068 ATGTTCGTGCATGACAATTAGG 57.379 40.909 8.48 0.00 0.00 2.69
2833 3370 4.037923 GGCAAGTGGTCTGAATTTTTCTCA 59.962 41.667 0.00 0.00 0.00 3.27
3033 3581 8.617290 TTGAAACTTGAGTAGAATTTCCTACC 57.383 34.615 0.00 0.00 39.77 3.18
3040 3588 5.189145 TGAGTAGAATTTCCTACCCCTTGAC 59.811 44.000 0.00 0.00 39.77 3.18
3041 3589 3.629142 AGAATTTCCTACCCCTTGACG 57.371 47.619 0.00 0.00 0.00 4.35
3042 3590 3.178865 AGAATTTCCTACCCCTTGACGA 58.821 45.455 0.00 0.00 0.00 4.20
3043 3591 3.585732 AGAATTTCCTACCCCTTGACGAA 59.414 43.478 0.00 0.00 0.00 3.85
3044 3592 4.042435 AGAATTTCCTACCCCTTGACGAAA 59.958 41.667 0.00 0.00 0.00 3.46
3045 3593 3.412237 TTTCCTACCCCTTGACGAAAG 57.588 47.619 0.00 0.00 35.47 2.62
3105 3653 6.213195 ACCCTTTCAATCAAATATTTGGAGCA 59.787 34.615 24.40 8.74 38.66 4.26
3162 3710 8.023128 GCTTATTGTTCAAAGCTTCTGTCATAA 58.977 33.333 0.00 0.00 43.77 1.90
3196 3744 4.515191 TGTGAAACCTGCTCTCATAACAAC 59.485 41.667 0.00 0.00 34.36 3.32
3252 3800 4.163458 TCTCCAAACTAATCTATTGGCCGT 59.837 41.667 0.00 0.00 42.65 5.68
3263 3811 0.392461 ATTGGCCGTACGCAGAACAT 60.392 50.000 10.49 0.00 40.31 2.71
3272 3820 4.498513 CCGTACGCAGAACATTAGGTATCA 60.499 45.833 10.49 0.00 0.00 2.15
3275 3823 5.339008 ACGCAGAACATTAGGTATCAAGA 57.661 39.130 0.00 0.00 0.00 3.02
3294 3842 4.829064 AGAACGTTCTTTAAGCATGCAA 57.171 36.364 24.93 2.93 32.55 4.08
3301 3849 6.747280 ACGTTCTTTAAGCATGCAACATTATC 59.253 34.615 21.98 3.77 0.00 1.75
3302 3850 6.746822 CGTTCTTTAAGCATGCAACATTATCA 59.253 34.615 21.98 0.00 0.00 2.15
3335 3883 8.844244 GCCTTCATAAGTATCAACAAATCATCT 58.156 33.333 0.00 0.00 0.00 2.90
3348 3897 8.912988 TCAACAAATCATCTGTAAAAAGGAGTT 58.087 29.630 0.00 0.00 0.00 3.01
3356 3905 9.010029 TCATCTGTAAAAAGGAGTTTGGTTATC 57.990 33.333 0.00 0.00 0.00 1.75
3376 3926 2.567615 TCAAGGGAGCTCTCTACAAACC 59.432 50.000 18.65 4.78 0.00 3.27
3457 4058 4.514066 GTGGATAATAAAAGCAGGTACGGG 59.486 45.833 0.00 0.00 0.00 5.28
3483 4084 2.270527 GTCTCCTTGCCTGAGCCC 59.729 66.667 0.00 0.00 38.69 5.19
3490 4091 2.430704 CTTGCCTGAGCCCCCTCAAA 62.431 60.000 0.00 0.00 46.84 2.69
3497 4098 0.112412 GAGCCCCCTCAAAGGTTTGA 59.888 55.000 5.09 5.09 44.31 2.69
3501 4102 2.393646 CCCCCTCAAAGGTTTGAAACA 58.606 47.619 10.53 0.00 45.61 2.83
3502 4103 2.769095 CCCCCTCAAAGGTTTGAAACAA 59.231 45.455 10.53 0.00 45.61 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 0.538057 CATTGCCATCCACCCGCTAT 60.538 55.000 0.00 0.00 0.00 2.97
1 2 1.152984 CATTGCCATCCACCCGCTA 60.153 57.895 0.00 0.00 0.00 4.26
2 3 2.440796 CATTGCCATCCACCCGCT 60.441 61.111 0.00 0.00 0.00 5.52
3 4 3.530260 CCATTGCCATCCACCCGC 61.530 66.667 0.00 0.00 0.00 6.13
4 5 2.044053 ACCATTGCCATCCACCCG 60.044 61.111 0.00 0.00 0.00 5.28
5 6 2.059786 CCACCATTGCCATCCACCC 61.060 63.158 0.00 0.00 0.00 4.61
6 7 2.059786 CCCACCATTGCCATCCACC 61.060 63.158 0.00 0.00 0.00 4.61
7 8 2.724273 GCCCACCATTGCCATCCAC 61.724 63.158 0.00 0.00 0.00 4.02
8 9 2.364056 GCCCACCATTGCCATCCA 60.364 61.111 0.00 0.00 0.00 3.41
9 10 2.042639 AGCCCACCATTGCCATCC 60.043 61.111 0.00 0.00 0.00 3.51
10 11 3.085119 GCAGCCCACCATTGCCATC 62.085 63.158 0.00 0.00 31.79 3.51
11 12 3.078836 GCAGCCCACCATTGCCAT 61.079 61.111 0.00 0.00 31.79 4.40
12 13 4.617556 TGCAGCCCACCATTGCCA 62.618 61.111 0.00 0.00 37.03 4.92
13 14 3.766691 CTGCAGCCCACCATTGCC 61.767 66.667 0.00 0.00 37.03 4.52
14 15 2.056223 ATCTGCAGCCCACCATTGC 61.056 57.895 9.47 0.00 38.30 3.56
15 16 1.672854 CCATCTGCAGCCCACCATTG 61.673 60.000 9.47 0.00 0.00 2.82
16 17 1.380785 CCATCTGCAGCCCACCATT 60.381 57.895 9.47 0.00 0.00 3.16
17 18 1.652187 ATCCATCTGCAGCCCACCAT 61.652 55.000 9.47 0.00 0.00 3.55
18 19 2.311070 ATCCATCTGCAGCCCACCA 61.311 57.895 9.47 0.00 0.00 4.17
19 20 1.826921 CATCCATCTGCAGCCCACC 60.827 63.158 9.47 0.00 0.00 4.61
20 21 1.826921 CCATCCATCTGCAGCCCAC 60.827 63.158 9.47 0.00 0.00 4.61
21 22 2.599032 CCATCCATCTGCAGCCCA 59.401 61.111 9.47 0.00 0.00 5.36
22 23 2.203451 CCCATCCATCTGCAGCCC 60.203 66.667 9.47 0.00 0.00 5.19
23 24 2.910994 GCCCATCCATCTGCAGCC 60.911 66.667 9.47 0.00 0.00 4.85
24 25 3.285215 CGCCCATCCATCTGCAGC 61.285 66.667 9.47 0.00 0.00 5.25
25 26 2.593725 CCGCCCATCCATCTGCAG 60.594 66.667 7.63 7.63 0.00 4.41
26 27 4.193893 CCCGCCCATCCATCTGCA 62.194 66.667 0.00 0.00 0.00 4.41
27 28 4.195334 ACCCGCCCATCCATCTGC 62.195 66.667 0.00 0.00 0.00 4.26
28 29 2.203252 CACCCGCCCATCCATCTG 60.203 66.667 0.00 0.00 0.00 2.90
29 30 3.492353 CCACCCGCCCATCCATCT 61.492 66.667 0.00 0.00 0.00 2.90
43 44 2.713967 TAACCTACTCCGGCGCCAC 61.714 63.158 28.98 0.00 0.00 5.01
44 45 2.362760 TAACCTACTCCGGCGCCA 60.363 61.111 28.98 6.80 0.00 5.69
45 46 2.105729 GTAACCTACTCCGGCGCC 59.894 66.667 19.07 19.07 0.00 6.53
46 47 3.204418 AGTAACCTACTCCGGCGC 58.796 61.111 0.00 0.00 32.47 6.53
52 53 5.579570 TGCGATTGCCGAGTAACCTACTC 62.580 52.174 1.50 4.10 43.76 2.59
53 54 1.202382 GCGATTGCCGAGTAACCTACT 60.202 52.381 0.00 0.00 41.76 2.57
54 55 1.206523 GCGATTGCCGAGTAACCTAC 58.793 55.000 0.00 0.00 41.76 3.18
55 56 0.818938 TGCGATTGCCGAGTAACCTA 59.181 50.000 1.50 0.00 41.78 3.08
56 57 0.178068 ATGCGATTGCCGAGTAACCT 59.822 50.000 1.50 0.00 41.78 3.50
57 58 1.860676 TATGCGATTGCCGAGTAACC 58.139 50.000 1.50 0.00 41.78 2.85
58 59 3.057019 TGATATGCGATTGCCGAGTAAC 58.943 45.455 1.50 0.00 41.78 2.50
59 60 3.378911 TGATATGCGATTGCCGAGTAA 57.621 42.857 1.50 0.00 41.78 2.24
60 61 3.592898 ATGATATGCGATTGCCGAGTA 57.407 42.857 1.50 0.00 41.78 2.59
61 62 2.462456 ATGATATGCGATTGCCGAGT 57.538 45.000 1.50 0.00 41.78 4.18
62 63 2.738314 TCAATGATATGCGATTGCCGAG 59.262 45.455 1.50 0.00 41.78 4.63
63 64 2.765122 TCAATGATATGCGATTGCCGA 58.235 42.857 1.50 0.00 41.78 5.54
64 65 3.120095 ACATCAATGATATGCGATTGCCG 60.120 43.478 1.50 0.00 41.78 5.69
65 66 4.430137 ACATCAATGATATGCGATTGCC 57.570 40.909 1.50 0.00 41.78 4.52
66 67 5.026462 GCTACATCAATGATATGCGATTGC 58.974 41.667 0.00 0.00 43.20 3.56
67 68 5.253335 CGCTACATCAATGATATGCGATTG 58.747 41.667 22.41 3.43 44.02 2.67
68 69 4.201753 GCGCTACATCAATGATATGCGATT 60.202 41.667 27.34 0.00 44.02 3.34
69 70 3.308053 GCGCTACATCAATGATATGCGAT 59.692 43.478 27.34 3.77 44.02 4.58
70 71 2.667969 GCGCTACATCAATGATATGCGA 59.332 45.455 27.34 1.48 44.02 5.10
71 72 2.533561 CGCGCTACATCAATGATATGCG 60.534 50.000 22.48 22.48 44.10 4.73
72 73 2.667969 TCGCGCTACATCAATGATATGC 59.332 45.455 5.56 0.12 0.00 3.14
73 74 3.241458 CGTCGCGCTACATCAATGATATG 60.241 47.826 12.90 0.00 0.00 1.78
74 75 2.917343 CGTCGCGCTACATCAATGATAT 59.083 45.455 12.90 0.00 0.00 1.63
75 76 2.031508 TCGTCGCGCTACATCAATGATA 60.032 45.455 12.90 0.00 0.00 2.15
76 77 1.131771 CGTCGCGCTACATCAATGAT 58.868 50.000 12.90 0.00 0.00 2.45
77 78 0.099791 TCGTCGCGCTACATCAATGA 59.900 50.000 12.90 0.00 0.00 2.57
78 79 0.920664 TTCGTCGCGCTACATCAATG 59.079 50.000 12.90 0.00 0.00 2.82
79 80 0.921347 GTTCGTCGCGCTACATCAAT 59.079 50.000 12.90 0.00 0.00 2.57
80 81 1.074319 GGTTCGTCGCGCTACATCAA 61.074 55.000 12.90 0.00 0.00 2.57
81 82 1.515519 GGTTCGTCGCGCTACATCA 60.516 57.895 12.90 0.00 0.00 3.07
82 83 2.565394 CGGTTCGTCGCGCTACATC 61.565 63.158 12.90 1.71 0.00 3.06
83 84 2.578713 CGGTTCGTCGCGCTACAT 60.579 61.111 12.90 0.00 0.00 2.29
98 99 0.527817 GAGATAAGACACCACGGCGG 60.528 60.000 13.24 0.00 42.50 6.13
99 100 0.456221 AGAGATAAGACACCACGGCG 59.544 55.000 4.80 4.80 0.00 6.46
100 101 2.426024 TGTAGAGATAAGACACCACGGC 59.574 50.000 0.00 0.00 0.00 5.68
101 102 3.442625 TGTGTAGAGATAAGACACCACGG 59.557 47.826 2.22 0.00 0.00 4.94
102 103 4.696899 TGTGTAGAGATAAGACACCACG 57.303 45.455 2.22 0.00 0.00 4.94
122 123 9.262472 GCGTTCAAACAGTTAGAAGTATAATTG 57.738 33.333 0.00 0.00 0.00 2.32
123 124 8.166706 CGCGTTCAAACAGTTAGAAGTATAATT 58.833 33.333 0.00 0.00 0.00 1.40
124 125 7.201496 CCGCGTTCAAACAGTTAGAAGTATAAT 60.201 37.037 4.92 0.00 0.00 1.28
125 126 6.089820 CCGCGTTCAAACAGTTAGAAGTATAA 59.910 38.462 4.92 0.00 0.00 0.98
126 127 5.574055 CCGCGTTCAAACAGTTAGAAGTATA 59.426 40.000 4.92 0.00 0.00 1.47
127 128 4.387862 CCGCGTTCAAACAGTTAGAAGTAT 59.612 41.667 4.92 0.00 0.00 2.12
128 129 3.737266 CCGCGTTCAAACAGTTAGAAGTA 59.263 43.478 4.92 0.00 0.00 2.24
129 130 2.542595 CCGCGTTCAAACAGTTAGAAGT 59.457 45.455 4.92 0.00 0.00 3.01
130 131 2.798283 TCCGCGTTCAAACAGTTAGAAG 59.202 45.455 4.92 0.00 0.00 2.85
131 132 2.798283 CTCCGCGTTCAAACAGTTAGAA 59.202 45.455 4.92 0.00 0.00 2.10
132 133 2.400399 CTCCGCGTTCAAACAGTTAGA 58.600 47.619 4.92 0.00 0.00 2.10
133 134 1.136336 GCTCCGCGTTCAAACAGTTAG 60.136 52.381 4.92 0.00 0.00 2.34
134 135 0.863144 GCTCCGCGTTCAAACAGTTA 59.137 50.000 4.92 0.00 0.00 2.24
135 136 1.647084 GCTCCGCGTTCAAACAGTT 59.353 52.632 4.92 0.00 0.00 3.16
136 137 3.330275 GCTCCGCGTTCAAACAGT 58.670 55.556 4.92 0.00 0.00 3.55
154 155 4.980805 TTCCTGGTGCACGCGACC 62.981 66.667 15.93 11.45 0.00 4.79
155 156 3.414700 CTTCCTGGTGCACGCGAC 61.415 66.667 15.93 4.74 0.00 5.19
158 159 3.730761 CTGCTTCCTGGTGCACGC 61.731 66.667 11.45 8.00 35.20 5.34
159 160 3.730761 GCTGCTTCCTGGTGCACG 61.731 66.667 11.45 0.00 35.20 5.34
160 161 2.595463 TGCTGCTTCCTGGTGCAC 60.595 61.111 8.80 8.80 35.20 4.57
161 162 2.595463 GTGCTGCTTCCTGGTGCA 60.595 61.111 14.14 14.14 37.63 4.57
162 163 3.730761 CGTGCTGCTTCCTGGTGC 61.731 66.667 0.00 7.32 0.00 5.01
163 164 3.052082 CCGTGCTGCTTCCTGGTG 61.052 66.667 0.00 0.00 0.00 4.17
164 165 4.335647 CCCGTGCTGCTTCCTGGT 62.336 66.667 0.00 0.00 0.00 4.00
187 188 2.811317 CACGCCGGTCAAGAGAGC 60.811 66.667 1.90 0.00 38.87 4.09
188 189 2.811317 GCACGCCGGTCAAGAGAG 60.811 66.667 1.90 0.00 0.00 3.20
189 190 4.373116 GGCACGCCGGTCAAGAGA 62.373 66.667 1.90 0.00 0.00 3.10
207 208 3.585862 TCACTCTTGTCGGTATTGAAGC 58.414 45.455 0.00 0.00 0.00 3.86
208 209 6.796426 TCTATCACTCTTGTCGGTATTGAAG 58.204 40.000 0.00 0.00 0.00 3.02
209 210 6.769134 TCTATCACTCTTGTCGGTATTGAA 57.231 37.500 0.00 0.00 0.00 2.69
210 211 6.293462 CGATCTATCACTCTTGTCGGTATTGA 60.293 42.308 0.00 0.00 0.00 2.57
211 212 5.853810 CGATCTATCACTCTTGTCGGTATTG 59.146 44.000 0.00 0.00 0.00 1.90
212 213 5.563085 GCGATCTATCACTCTTGTCGGTATT 60.563 44.000 0.00 0.00 0.00 1.89
213 214 4.083217 GCGATCTATCACTCTTGTCGGTAT 60.083 45.833 0.00 0.00 0.00 2.73
214 215 3.250280 GCGATCTATCACTCTTGTCGGTA 59.750 47.826 0.00 0.00 0.00 4.02
215 216 2.033550 GCGATCTATCACTCTTGTCGGT 59.966 50.000 0.00 0.00 0.00 4.69
216 217 2.656085 GCGATCTATCACTCTTGTCGG 58.344 52.381 0.00 0.00 0.00 4.79
217 218 2.286477 ACGCGATCTATCACTCTTGTCG 60.286 50.000 15.93 0.00 0.00 4.35
218 219 3.002862 AGACGCGATCTATCACTCTTGTC 59.997 47.826 15.93 0.00 35.15 3.18
219 220 2.946329 AGACGCGATCTATCACTCTTGT 59.054 45.455 15.93 0.00 35.15 3.16
220 221 3.002759 TCAGACGCGATCTATCACTCTTG 59.997 47.826 15.93 0.00 35.15 3.02
221 222 3.206964 TCAGACGCGATCTATCACTCTT 58.793 45.455 15.93 0.00 35.15 2.85
222 223 2.839975 TCAGACGCGATCTATCACTCT 58.160 47.619 15.93 0.00 35.15 3.24
223 224 3.187432 TGATCAGACGCGATCTATCACTC 59.813 47.826 15.93 0.00 42.01 3.51
224 225 3.142174 TGATCAGACGCGATCTATCACT 58.858 45.455 15.93 0.00 42.01 3.41
225 226 3.187432 TCTGATCAGACGCGATCTATCAC 59.813 47.826 21.67 5.48 42.01 3.06
226 227 3.187432 GTCTGATCAGACGCGATCTATCA 59.813 47.826 33.82 15.03 46.93 2.15
227 228 3.742786 GTCTGATCAGACGCGATCTATC 58.257 50.000 33.82 12.52 46.93 2.08
228 229 3.822594 GTCTGATCAGACGCGATCTAT 57.177 47.619 33.82 0.00 46.93 1.98
238 239 0.687427 TCATGCCCGGTCTGATCAGA 60.687 55.000 21.67 21.67 34.56 3.27
239 240 0.178767 TTCATGCCCGGTCTGATCAG 59.821 55.000 17.07 17.07 0.00 2.90
240 241 0.839277 ATTCATGCCCGGTCTGATCA 59.161 50.000 0.00 0.00 0.00 2.92
241 242 1.233019 CATTCATGCCCGGTCTGATC 58.767 55.000 0.00 0.00 0.00 2.92
242 243 3.409201 CATTCATGCCCGGTCTGAT 57.591 52.632 0.00 0.00 0.00 2.90
243 244 4.961637 CATTCATGCCCGGTCTGA 57.038 55.556 0.00 0.00 0.00 3.27
253 254 0.522705 GCGTCAGTGCTGCATTCATG 60.523 55.000 5.27 3.24 0.00 3.07
254 255 0.675837 AGCGTCAGTGCTGCATTCAT 60.676 50.000 5.27 0.00 45.28 2.57
255 256 1.301953 AGCGTCAGTGCTGCATTCA 60.302 52.632 5.27 0.00 45.28 2.57
256 257 3.571119 AGCGTCAGTGCTGCATTC 58.429 55.556 5.27 0.00 45.28 2.67
263 264 4.393308 GCTCTAGAGCGTCAGTGC 57.607 61.111 28.04 4.74 45.29 4.40
272 273 2.254051 GCTAGCGCCGCTCTAGAG 59.746 66.667 18.06 15.85 40.44 2.43
282 283 0.806102 TCGTCTGAAATGGCTAGCGC 60.806 55.000 9.00 0.00 0.00 5.92
283 284 1.202302 TCTCGTCTGAAATGGCTAGCG 60.202 52.381 9.00 0.00 0.00 4.26
284 285 2.586258 TCTCGTCTGAAATGGCTAGC 57.414 50.000 6.04 6.04 0.00 3.42
285 286 2.863137 GCTTCTCGTCTGAAATGGCTAG 59.137 50.000 0.00 0.00 0.00 3.42
286 287 2.735444 CGCTTCTCGTCTGAAATGGCTA 60.735 50.000 0.00 0.00 0.00 3.93
287 288 1.731720 GCTTCTCGTCTGAAATGGCT 58.268 50.000 0.00 0.00 0.00 4.75
288 289 0.371645 CGCTTCTCGTCTGAAATGGC 59.628 55.000 0.00 0.00 0.00 4.40
300 301 4.821589 CTCCCCCGCACGCTTCTC 62.822 72.222 0.00 0.00 0.00 2.87
302 303 4.388499 TTCTCCCCCGCACGCTTC 62.388 66.667 0.00 0.00 0.00 3.86
303 304 4.394712 CTTCTCCCCCGCACGCTT 62.395 66.667 0.00 0.00 0.00 4.68
307 308 4.410400 CACCCTTCTCCCCCGCAC 62.410 72.222 0.00 0.00 0.00 5.34
311 312 4.695791 ACCCCACCCTTCTCCCCC 62.696 72.222 0.00 0.00 0.00 5.40
312 313 3.339093 CACCCCACCCTTCTCCCC 61.339 72.222 0.00 0.00 0.00 4.81
313 314 3.339093 CCACCCCACCCTTCTCCC 61.339 72.222 0.00 0.00 0.00 4.30
314 315 3.339093 CCCACCCCACCCTTCTCC 61.339 72.222 0.00 0.00 0.00 3.71
315 316 4.048470 GCCCACCCCACCCTTCTC 62.048 72.222 0.00 0.00 0.00 2.87
316 317 3.202591 TAGCCCACCCCACCCTTCT 62.203 63.158 0.00 0.00 0.00 2.85
317 318 2.612746 TAGCCCACCCCACCCTTC 60.613 66.667 0.00 0.00 0.00 3.46
318 319 2.614013 CTAGCCCACCCCACCCTT 60.614 66.667 0.00 0.00 0.00 3.95
319 320 4.760220 CCTAGCCCACCCCACCCT 62.760 72.222 0.00 0.00 0.00 4.34
324 325 3.429580 ATTGCCCTAGCCCACCCC 61.430 66.667 0.00 0.00 38.69 4.95
325 326 2.195956 GATTGCCCTAGCCCACCC 59.804 66.667 0.00 0.00 38.69 4.61
326 327 1.152881 CTGATTGCCCTAGCCCACC 60.153 63.158 0.00 0.00 38.69 4.61
327 328 1.152881 CCTGATTGCCCTAGCCCAC 60.153 63.158 0.00 0.00 38.69 4.61
328 329 0.918799 TTCCTGATTGCCCTAGCCCA 60.919 55.000 0.00 0.00 38.69 5.36
329 330 0.466372 GTTCCTGATTGCCCTAGCCC 60.466 60.000 0.00 0.00 38.69 5.19
330 331 0.815615 CGTTCCTGATTGCCCTAGCC 60.816 60.000 0.00 0.00 38.69 3.93
331 332 0.178068 TCGTTCCTGATTGCCCTAGC 59.822 55.000 0.00 0.00 40.48 3.42
332 333 2.691409 TTCGTTCCTGATTGCCCTAG 57.309 50.000 0.00 0.00 0.00 3.02
333 334 3.426787 TTTTCGTTCCTGATTGCCCTA 57.573 42.857 0.00 0.00 0.00 3.53
334 335 2.286365 TTTTCGTTCCTGATTGCCCT 57.714 45.000 0.00 0.00 0.00 5.19
335 336 2.417243 CCATTTTCGTTCCTGATTGCCC 60.417 50.000 0.00 0.00 0.00 5.36
336 337 2.879826 CCATTTTCGTTCCTGATTGCC 58.120 47.619 0.00 0.00 0.00 4.52
337 338 2.262211 GCCATTTTCGTTCCTGATTGC 58.738 47.619 0.00 0.00 0.00 3.56
338 339 3.504863 CTGCCATTTTCGTTCCTGATTG 58.495 45.455 0.00 0.00 0.00 2.67
339 340 2.094545 GCTGCCATTTTCGTTCCTGATT 60.095 45.455 0.00 0.00 0.00 2.57
340 341 1.474077 GCTGCCATTTTCGTTCCTGAT 59.526 47.619 0.00 0.00 0.00 2.90
341 342 0.881118 GCTGCCATTTTCGTTCCTGA 59.119 50.000 0.00 0.00 0.00 3.86
342 343 0.597568 TGCTGCCATTTTCGTTCCTG 59.402 50.000 0.00 0.00 0.00 3.86
343 344 0.883833 CTGCTGCCATTTTCGTTCCT 59.116 50.000 0.00 0.00 0.00 3.36
344 345 0.598065 ACTGCTGCCATTTTCGTTCC 59.402 50.000 0.00 0.00 0.00 3.62
345 346 1.401539 GGACTGCTGCCATTTTCGTTC 60.402 52.381 0.00 0.00 0.00 3.95
346 347 0.598065 GGACTGCTGCCATTTTCGTT 59.402 50.000 0.00 0.00 0.00 3.85
347 348 1.577328 CGGACTGCTGCCATTTTCGT 61.577 55.000 0.00 0.00 0.00 3.85
348 349 1.135315 CGGACTGCTGCCATTTTCG 59.865 57.895 0.00 0.00 0.00 3.46
349 350 0.960364 TCCGGACTGCTGCCATTTTC 60.960 55.000 0.00 0.00 0.00 2.29
350 351 1.074775 TCCGGACTGCTGCCATTTT 59.925 52.632 0.00 0.00 0.00 1.82
351 352 1.675641 GTCCGGACTGCTGCCATTT 60.676 57.895 27.64 0.00 0.00 2.32
352 353 2.045926 GTCCGGACTGCTGCCATT 60.046 61.111 27.64 0.00 0.00 3.16
353 354 3.321648 TGTCCGGACTGCTGCCAT 61.322 61.111 33.39 0.00 0.00 4.40
354 355 4.314440 GTGTCCGGACTGCTGCCA 62.314 66.667 33.39 10.45 0.00 4.92
357 358 4.662961 TGCGTGTCCGGACTGCTG 62.663 66.667 35.55 24.19 35.48 4.41
363 364 2.181521 GGTTTTGTGCGTGTCCGGA 61.182 57.895 0.00 0.00 33.68 5.14
364 365 2.330041 GGTTTTGTGCGTGTCCGG 59.670 61.111 0.00 0.00 33.68 5.14
365 366 2.113131 GAGGGTTTTGTGCGTGTCCG 62.113 60.000 0.00 0.00 37.07 4.79
366 367 1.652563 GAGGGTTTTGTGCGTGTCC 59.347 57.895 0.00 0.00 0.00 4.02
367 368 1.098712 TGGAGGGTTTTGTGCGTGTC 61.099 55.000 0.00 0.00 0.00 3.67
368 369 0.467290 ATGGAGGGTTTTGTGCGTGT 60.467 50.000 0.00 0.00 0.00 4.49
369 370 0.673437 AATGGAGGGTTTTGTGCGTG 59.327 50.000 0.00 0.00 0.00 5.34
370 371 1.408969 AAATGGAGGGTTTTGTGCGT 58.591 45.000 0.00 0.00 0.00 5.24
371 372 2.134346 CAAAATGGAGGGTTTTGTGCG 58.866 47.619 3.80 0.00 40.12 5.34
375 376 3.807071 CGGAAACAAAATGGAGGGTTTTG 59.193 43.478 9.14 9.14 46.64 2.44
376 377 3.181459 CCGGAAACAAAATGGAGGGTTTT 60.181 43.478 0.00 0.00 33.92 2.43
377 378 2.367241 CCGGAAACAAAATGGAGGGTTT 59.633 45.455 0.00 0.00 36.27 3.27
378 379 1.967779 CCGGAAACAAAATGGAGGGTT 59.032 47.619 0.00 0.00 0.00 4.11
379 380 1.133294 ACCGGAAACAAAATGGAGGGT 60.133 47.619 9.46 0.00 0.00 4.34
380 381 1.627864 ACCGGAAACAAAATGGAGGG 58.372 50.000 9.46 0.00 0.00 4.30
381 382 3.181470 ACAAACCGGAAACAAAATGGAGG 60.181 43.478 9.46 0.00 0.00 4.30
382 383 3.801594 CACAAACCGGAAACAAAATGGAG 59.198 43.478 9.46 0.00 0.00 3.86
383 384 3.786635 CACAAACCGGAAACAAAATGGA 58.213 40.909 9.46 0.00 0.00 3.41
384 385 2.286563 GCACAAACCGGAAACAAAATGG 59.713 45.455 9.46 0.00 0.00 3.16
385 386 2.034170 CGCACAAACCGGAAACAAAATG 60.034 45.455 9.46 0.00 0.00 2.32
386 387 2.159226 TCGCACAAACCGGAAACAAAAT 60.159 40.909 9.46 0.00 0.00 1.82
387 388 1.201647 TCGCACAAACCGGAAACAAAA 59.798 42.857 9.46 0.00 0.00 2.44
388 389 0.809385 TCGCACAAACCGGAAACAAA 59.191 45.000 9.46 0.00 0.00 2.83
389 390 0.809385 TTCGCACAAACCGGAAACAA 59.191 45.000 9.46 0.00 0.00 2.83
390 391 0.809385 TTTCGCACAAACCGGAAACA 59.191 45.000 9.46 0.00 0.00 2.83
391 392 1.910688 TTTTCGCACAAACCGGAAAC 58.089 45.000 9.46 0.00 28.92 2.78
392 393 2.649331 TTTTTCGCACAAACCGGAAA 57.351 40.000 9.46 0.00 31.82 3.13
393 394 2.860735 CAATTTTTCGCACAAACCGGAA 59.139 40.909 9.46 0.00 0.00 4.30
394 395 2.159226 ACAATTTTTCGCACAAACCGGA 60.159 40.909 9.46 0.00 0.00 5.14
395 396 2.197577 ACAATTTTTCGCACAAACCGG 58.802 42.857 0.00 0.00 0.00 5.28
396 397 4.089351 GGATACAATTTTTCGCACAAACCG 59.911 41.667 0.00 0.00 0.00 4.44
397 398 4.089351 CGGATACAATTTTTCGCACAAACC 59.911 41.667 0.00 0.00 0.00 3.27
398 399 4.432373 GCGGATACAATTTTTCGCACAAAC 60.432 41.667 0.00 0.00 42.27 2.93
399 400 3.670991 GCGGATACAATTTTTCGCACAAA 59.329 39.130 0.00 0.00 42.27 2.83
400 401 3.238441 GCGGATACAATTTTTCGCACAA 58.762 40.909 0.00 0.00 42.27 3.33
401 402 2.226674 TGCGGATACAATTTTTCGCACA 59.773 40.909 4.08 0.00 46.32 4.57
402 403 2.857618 TGCGGATACAATTTTTCGCAC 58.142 42.857 4.08 0.00 46.32 5.34
404 405 2.845967 CTGTGCGGATACAATTTTTCGC 59.154 45.455 0.00 0.00 42.90 4.70
405 406 2.845967 GCTGTGCGGATACAATTTTTCG 59.154 45.455 0.00 0.00 0.00 3.46
406 407 3.853671 CAGCTGTGCGGATACAATTTTTC 59.146 43.478 5.25 0.00 0.00 2.29
407 408 3.505680 TCAGCTGTGCGGATACAATTTTT 59.494 39.130 14.67 0.00 0.00 1.94
408 409 3.081061 TCAGCTGTGCGGATACAATTTT 58.919 40.909 14.67 0.00 0.00 1.82
409 410 2.710377 TCAGCTGTGCGGATACAATTT 58.290 42.857 14.67 0.00 0.00 1.82
410 411 2.401583 TCAGCTGTGCGGATACAATT 57.598 45.000 14.67 0.00 0.00 2.32
411 412 2.009774 GTTCAGCTGTGCGGATACAAT 58.990 47.619 14.67 0.00 32.28 2.71
412 413 1.438651 GTTCAGCTGTGCGGATACAA 58.561 50.000 14.67 0.00 32.28 2.41
413 414 0.735978 CGTTCAGCTGTGCGGATACA 60.736 55.000 14.67 0.00 32.28 2.29
414 415 1.421410 CCGTTCAGCTGTGCGGATAC 61.421 60.000 32.30 13.64 46.33 2.24
415 416 1.153647 CCGTTCAGCTGTGCGGATA 60.154 57.895 32.30 5.50 46.33 2.59
416 417 2.434884 CCGTTCAGCTGTGCGGAT 60.435 61.111 32.30 0.00 46.33 4.18
418 419 3.414700 GTCCGTTCAGCTGTGCGG 61.415 66.667 31.02 31.02 44.95 5.69
419 420 3.414700 GGTCCGTTCAGCTGTGCG 61.415 66.667 14.67 17.97 0.00 5.34
420 421 3.414700 CGGTCCGTTCAGCTGTGC 61.415 66.667 14.67 6.90 0.00 4.57
421 422 0.172578 TATCGGTCCGTTCAGCTGTG 59.827 55.000 14.67 5.01 0.00 3.66
422 423 1.112113 ATATCGGTCCGTTCAGCTGT 58.888 50.000 14.67 0.00 0.00 4.40
423 424 2.293677 ACTATATCGGTCCGTTCAGCTG 59.706 50.000 11.88 7.63 0.00 4.24
424 425 2.584236 ACTATATCGGTCCGTTCAGCT 58.416 47.619 11.88 0.00 0.00 4.24
425 426 4.660105 GATACTATATCGGTCCGTTCAGC 58.340 47.826 11.88 0.00 0.00 4.26
426 427 4.391216 ACGATACTATATCGGTCCGTTCAG 59.609 45.833 19.30 6.74 44.98 3.02
427 428 4.152938 CACGATACTATATCGGTCCGTTCA 59.847 45.833 19.30 0.00 44.98 3.18
428 429 4.153117 ACACGATACTATATCGGTCCGTTC 59.847 45.833 19.30 0.00 44.98 3.95
429 430 4.067896 ACACGATACTATATCGGTCCGTT 58.932 43.478 19.30 5.52 44.98 4.44
430 431 3.668447 ACACGATACTATATCGGTCCGT 58.332 45.455 19.30 9.83 44.98 4.69
431 432 4.400845 CAACACGATACTATATCGGTCCG 58.599 47.826 19.30 4.39 44.98 4.79
432 433 4.456911 TCCAACACGATACTATATCGGTCC 59.543 45.833 19.30 0.00 44.98 4.46
433 434 5.618056 TCCAACACGATACTATATCGGTC 57.382 43.478 19.30 0.00 44.98 4.79
434 435 5.708697 TCATCCAACACGATACTATATCGGT 59.291 40.000 19.30 12.52 44.98 4.69
435 436 6.028368 GTCATCCAACACGATACTATATCGG 58.972 44.000 19.30 12.01 44.98 4.18
436 437 5.733109 CGTCATCCAACACGATACTATATCG 59.267 44.000 14.93 14.93 46.02 2.92
437 438 6.028368 CCGTCATCCAACACGATACTATATC 58.972 44.000 0.00 0.00 38.32 1.63
438 439 5.708697 TCCGTCATCCAACACGATACTATAT 59.291 40.000 0.00 0.00 38.32 0.86
439 440 5.065235 TCCGTCATCCAACACGATACTATA 58.935 41.667 0.00 0.00 38.32 1.31
440 441 3.887110 TCCGTCATCCAACACGATACTAT 59.113 43.478 0.00 0.00 38.32 2.12
441 442 3.281158 TCCGTCATCCAACACGATACTA 58.719 45.455 0.00 0.00 38.32 1.82
442 443 2.097036 TCCGTCATCCAACACGATACT 58.903 47.619 0.00 0.00 38.32 2.12
443 444 2.572191 TCCGTCATCCAACACGATAC 57.428 50.000 0.00 0.00 38.32 2.24
444 445 2.231721 TGTTCCGTCATCCAACACGATA 59.768 45.455 0.00 0.00 38.32 2.92
445 446 1.001520 TGTTCCGTCATCCAACACGAT 59.998 47.619 0.00 0.00 38.32 3.73
446 447 0.389757 TGTTCCGTCATCCAACACGA 59.610 50.000 0.00 0.00 38.32 4.35
447 448 0.511221 GTGTTCCGTCATCCAACACG 59.489 55.000 0.00 0.00 40.27 4.49
448 449 1.531149 CTGTGTTCCGTCATCCAACAC 59.469 52.381 7.13 7.13 46.73 3.32
449 450 1.140052 ACTGTGTTCCGTCATCCAACA 59.860 47.619 0.00 0.00 0.00 3.33
450 451 1.798813 GACTGTGTTCCGTCATCCAAC 59.201 52.381 0.00 0.00 0.00 3.77
451 452 1.604438 CGACTGTGTTCCGTCATCCAA 60.604 52.381 0.00 0.00 0.00 3.53
452 453 0.038618 CGACTGTGTTCCGTCATCCA 60.039 55.000 0.00 0.00 0.00 3.41
453 454 0.736325 CCGACTGTGTTCCGTCATCC 60.736 60.000 0.00 0.00 0.00 3.51
454 455 0.736325 CCCGACTGTGTTCCGTCATC 60.736 60.000 0.00 0.00 0.00 2.92
455 456 1.183030 TCCCGACTGTGTTCCGTCAT 61.183 55.000 0.00 0.00 0.00 3.06
456 457 1.829096 TCCCGACTGTGTTCCGTCA 60.829 57.895 0.00 0.00 0.00 4.35
457 458 1.372623 GTCCCGACTGTGTTCCGTC 60.373 63.158 0.00 0.00 0.00 4.79
458 459 2.732658 GTCCCGACTGTGTTCCGT 59.267 61.111 0.00 0.00 0.00 4.69
459 460 2.430244 CGTCCCGACTGTGTTCCG 60.430 66.667 0.00 0.00 0.00 4.30
460 461 2.710724 AAGCGTCCCGACTGTGTTCC 62.711 60.000 0.00 0.00 0.00 3.62
461 462 0.878961 AAAGCGTCCCGACTGTGTTC 60.879 55.000 0.00 0.00 0.00 3.18
462 463 1.145377 AAAGCGTCCCGACTGTGTT 59.855 52.632 0.00 0.00 0.00 3.32
463 464 1.594293 CAAAGCGTCCCGACTGTGT 60.594 57.895 0.00 0.00 0.00 3.72
464 465 1.284982 CTCAAAGCGTCCCGACTGTG 61.285 60.000 0.00 0.00 0.00 3.66
465 466 1.006102 CTCAAAGCGTCCCGACTGT 60.006 57.895 0.00 0.00 0.00 3.55
466 467 1.738099 CCTCAAAGCGTCCCGACTG 60.738 63.158 0.00 0.00 0.00 3.51
467 468 2.657237 CCTCAAAGCGTCCCGACT 59.343 61.111 0.00 0.00 0.00 4.18
468 469 2.434359 CCCTCAAAGCGTCCCGAC 60.434 66.667 0.00 0.00 0.00 4.79
469 470 2.920912 ACCCTCAAAGCGTCCCGA 60.921 61.111 0.00 0.00 0.00 5.14
470 471 2.434359 GACCCTCAAAGCGTCCCG 60.434 66.667 0.00 0.00 0.00 5.14
471 472 2.434359 CGACCCTCAAAGCGTCCC 60.434 66.667 0.00 0.00 0.00 4.46
472 473 1.005394 TTCGACCCTCAAAGCGTCC 60.005 57.895 0.00 0.00 0.00 4.79
473 474 0.319641 ACTTCGACCCTCAAAGCGTC 60.320 55.000 0.00 0.00 0.00 5.19
474 475 0.106149 AACTTCGACCCTCAAAGCGT 59.894 50.000 0.00 0.00 0.00 5.07
475 476 0.512952 CAACTTCGACCCTCAAAGCG 59.487 55.000 0.00 0.00 0.00 4.68
476 477 0.875059 CCAACTTCGACCCTCAAAGC 59.125 55.000 0.00 0.00 0.00 3.51
477 478 1.873591 CACCAACTTCGACCCTCAAAG 59.126 52.381 0.00 0.00 0.00 2.77
478 479 1.487142 TCACCAACTTCGACCCTCAAA 59.513 47.619 0.00 0.00 0.00 2.69
479 480 1.124780 TCACCAACTTCGACCCTCAA 58.875 50.000 0.00 0.00 0.00 3.02
480 481 0.391597 GTCACCAACTTCGACCCTCA 59.608 55.000 0.00 0.00 0.00 3.86
481 482 0.666577 CGTCACCAACTTCGACCCTC 60.667 60.000 0.00 0.00 0.00 4.30
482 483 1.366366 CGTCACCAACTTCGACCCT 59.634 57.895 0.00 0.00 0.00 4.34
483 484 2.315386 GCGTCACCAACTTCGACCC 61.315 63.158 0.00 0.00 0.00 4.46
484 485 2.654912 CGCGTCACCAACTTCGACC 61.655 63.158 0.00 0.00 0.00 4.79
485 486 2.844146 CGCGTCACCAACTTCGAC 59.156 61.111 0.00 0.00 0.00 4.20
486 487 2.964438 AAGCGCGTCACCAACTTCGA 62.964 55.000 8.43 0.00 0.00 3.71
487 488 2.594962 AAGCGCGTCACCAACTTCG 61.595 57.895 8.43 0.00 0.00 3.79
488 489 1.082756 CAAGCGCGTCACCAACTTC 60.083 57.895 8.43 0.00 0.00 3.01
489 490 3.022287 CAAGCGCGTCACCAACTT 58.978 55.556 8.43 0.00 0.00 2.66
490 491 2.709125 TAGCAAGCGCGTCACCAACT 62.709 55.000 8.43 0.00 45.49 3.16
491 492 2.227968 CTAGCAAGCGCGTCACCAAC 62.228 60.000 8.43 0.00 45.49 3.77
492 493 2.027073 CTAGCAAGCGCGTCACCAA 61.027 57.895 8.43 0.00 45.49 3.67
493 494 2.432456 CTAGCAAGCGCGTCACCA 60.432 61.111 8.43 0.00 45.49 4.17
494 495 2.432628 ACTAGCAAGCGCGTCACC 60.433 61.111 8.43 0.00 45.49 4.02
495 496 0.179171 TAGACTAGCAAGCGCGTCAC 60.179 55.000 8.43 0.00 45.49 3.67
496 497 0.524414 TTAGACTAGCAAGCGCGTCA 59.476 50.000 8.43 0.00 45.49 4.35
497 498 1.841450 ATTAGACTAGCAAGCGCGTC 58.159 50.000 8.43 1.67 45.49 5.19
498 499 2.295253 AATTAGACTAGCAAGCGCGT 57.705 45.000 8.43 0.00 45.49 6.01
499 500 3.797256 AGTAAATTAGACTAGCAAGCGCG 59.203 43.478 0.00 0.00 45.49 6.86
500 501 4.209495 GGAGTAAATTAGACTAGCAAGCGC 59.791 45.833 0.00 0.00 38.99 5.92
501 502 4.745620 GGGAGTAAATTAGACTAGCAAGCG 59.254 45.833 0.00 0.00 0.00 4.68
502 503 5.524281 GTGGGAGTAAATTAGACTAGCAAGC 59.476 44.000 0.00 0.00 0.00 4.01
503 504 6.879400 AGTGGGAGTAAATTAGACTAGCAAG 58.121 40.000 0.00 0.00 0.00 4.01
504 505 6.869206 AGTGGGAGTAAATTAGACTAGCAA 57.131 37.500 0.00 0.00 0.00 3.91
505 506 7.563924 ACATAGTGGGAGTAAATTAGACTAGCA 59.436 37.037 0.00 0.00 0.00 3.49
506 507 7.953752 ACATAGTGGGAGTAAATTAGACTAGC 58.046 38.462 0.00 0.00 0.00 3.42
509 510 8.368668 GCATACATAGTGGGAGTAAATTAGACT 58.631 37.037 0.00 0.00 0.00 3.24
510 511 7.603024 GGCATACATAGTGGGAGTAAATTAGAC 59.397 40.741 0.00 0.00 0.00 2.59
511 512 7.291416 TGGCATACATAGTGGGAGTAAATTAGA 59.709 37.037 0.00 0.00 0.00 2.10
512 513 7.450074 TGGCATACATAGTGGGAGTAAATTAG 58.550 38.462 0.00 0.00 0.00 1.73
513 514 7.381789 TGGCATACATAGTGGGAGTAAATTA 57.618 36.000 0.00 0.00 0.00 1.40
514 515 6.260700 TGGCATACATAGTGGGAGTAAATT 57.739 37.500 0.00 0.00 0.00 1.82
515 516 5.904984 TGGCATACATAGTGGGAGTAAAT 57.095 39.130 0.00 0.00 0.00 1.40
516 517 5.397447 CCTTGGCATACATAGTGGGAGTAAA 60.397 44.000 0.00 0.00 0.00 2.01
517 518 4.102524 CCTTGGCATACATAGTGGGAGTAA 59.897 45.833 0.00 0.00 0.00 2.24
518 519 3.646162 CCTTGGCATACATAGTGGGAGTA 59.354 47.826 0.00 0.00 0.00 2.59
519 520 2.439507 CCTTGGCATACATAGTGGGAGT 59.560 50.000 0.00 0.00 0.00 3.85
520 521 2.439507 ACCTTGGCATACATAGTGGGAG 59.560 50.000 0.00 0.00 0.00 4.30
521 522 2.172505 CACCTTGGCATACATAGTGGGA 59.827 50.000 0.00 0.00 32.01 4.37
522 523 2.172505 TCACCTTGGCATACATAGTGGG 59.827 50.000 0.00 0.00 34.77 4.61
523 524 3.558931 TCACCTTGGCATACATAGTGG 57.441 47.619 0.00 0.00 34.77 4.00
524 525 4.883585 ACAATCACCTTGGCATACATAGTG 59.116 41.667 0.00 0.00 39.30 2.74
525 526 5.116084 ACAATCACCTTGGCATACATAGT 57.884 39.130 0.00 0.00 39.30 2.12
526 527 7.587629 CATTACAATCACCTTGGCATACATAG 58.412 38.462 0.00 0.00 39.30 2.23
527 528 6.016360 GCATTACAATCACCTTGGCATACATA 60.016 38.462 0.00 0.00 39.30 2.29
528 529 5.221303 GCATTACAATCACCTTGGCATACAT 60.221 40.000 0.00 0.00 39.30 2.29
529 530 4.097741 GCATTACAATCACCTTGGCATACA 59.902 41.667 0.00 0.00 39.30 2.29
530 531 4.097741 TGCATTACAATCACCTTGGCATAC 59.902 41.667 0.00 0.00 39.30 2.39
531 532 4.097741 GTGCATTACAATCACCTTGGCATA 59.902 41.667 0.00 0.00 39.30 3.14
532 533 3.098377 TGCATTACAATCACCTTGGCAT 58.902 40.909 0.00 0.00 39.30 4.40
533 534 2.230992 GTGCATTACAATCACCTTGGCA 59.769 45.455 0.00 0.00 39.30 4.92
534 535 2.417243 GGTGCATTACAATCACCTTGGC 60.417 50.000 12.49 0.00 45.04 4.52
535 536 3.508744 GGTGCATTACAATCACCTTGG 57.491 47.619 12.49 0.00 45.04 3.61
540 541 5.615289 AGATAGGAGGTGCATTACAATCAC 58.385 41.667 0.00 0.00 0.00 3.06
541 542 5.894298 AGATAGGAGGTGCATTACAATCA 57.106 39.130 0.00 0.00 0.00 2.57
542 543 8.097038 TCATTAGATAGGAGGTGCATTACAATC 58.903 37.037 0.00 0.00 0.00 2.67
543 544 7.977818 TCATTAGATAGGAGGTGCATTACAAT 58.022 34.615 0.00 0.00 0.00 2.71
544 545 7.373617 TCATTAGATAGGAGGTGCATTACAA 57.626 36.000 0.00 0.00 0.00 2.41
545 546 6.994421 TCATTAGATAGGAGGTGCATTACA 57.006 37.500 0.00 0.00 0.00 2.41
546 547 7.095017 GCTTTCATTAGATAGGAGGTGCATTAC 60.095 40.741 0.00 0.00 0.00 1.89
547 548 6.936900 GCTTTCATTAGATAGGAGGTGCATTA 59.063 38.462 0.00 0.00 0.00 1.90
548 549 5.767168 GCTTTCATTAGATAGGAGGTGCATT 59.233 40.000 0.00 0.00 0.00 3.56
549 550 5.312079 GCTTTCATTAGATAGGAGGTGCAT 58.688 41.667 0.00 0.00 0.00 3.96
550 551 4.708177 GCTTTCATTAGATAGGAGGTGCA 58.292 43.478 0.00 0.00 0.00 4.57
551 552 3.743396 CGCTTTCATTAGATAGGAGGTGC 59.257 47.826 0.00 0.00 0.00 5.01
552 553 4.950050 ACGCTTTCATTAGATAGGAGGTG 58.050 43.478 0.00 0.00 0.00 4.00
553 554 5.615925 AACGCTTTCATTAGATAGGAGGT 57.384 39.130 0.00 0.00 0.00 3.85
554 555 6.284459 AGAAACGCTTTCATTAGATAGGAGG 58.716 40.000 11.33 0.00 42.10 4.30
555 556 7.778470 AAGAAACGCTTTCATTAGATAGGAG 57.222 36.000 11.33 0.00 42.10 3.69
556 557 9.661563 TTAAAGAAACGCTTTCATTAGATAGGA 57.338 29.630 11.33 0.00 43.17 2.94
575 576 9.729281 ATCGGGTACAGTATTTTCTTTAAAGAA 57.271 29.630 23.65 23.65 42.91 2.52
576 577 9.729281 AATCGGGTACAGTATTTTCTTTAAAGA 57.271 29.630 13.99 13.99 0.00 2.52
579 580 9.101655 GCTAATCGGGTACAGTATTTTCTTTAA 57.898 33.333 0.00 0.00 0.00 1.52
597 598 5.920840 TCATTTGACTAAGATCGCTAATCGG 59.079 40.000 0.00 0.00 39.55 4.18
627 628 0.030504 ACATCGAGATCTGCGCTCTG 59.969 55.000 9.73 0.00 0.00 3.35
673 674 4.257267 TGTCCTGTCACTGACAATGTAG 57.743 45.455 12.92 1.40 42.26 2.74
674 675 4.681074 TTGTCCTGTCACTGACAATGTA 57.319 40.909 12.92 0.00 44.24 2.29
938 941 3.843632 CTAGCTAGCAGAGTCAGCG 57.156 57.895 18.83 0.00 40.29 5.18
1003 1011 2.094700 CCTTCACTTCTTCATCGGTCGA 60.095 50.000 0.00 0.00 0.00 4.20
1194 1232 4.463879 CTGACTGGCAGGCCGGAG 62.464 72.222 25.25 10.91 45.10 4.63
1272 1310 1.579429 GTTGTCCATGTTGTCCGCC 59.421 57.895 0.00 0.00 0.00 6.13
1491 1529 2.661537 TCGACGTTGTGCTGGCAG 60.662 61.111 10.94 10.94 0.00 4.85
2058 2125 3.314331 CACCCCCAGACGAGCAGT 61.314 66.667 0.00 0.00 0.00 4.40
2290 2357 2.698797 TCCCAACCACGATATCCTTCTC 59.301 50.000 0.00 0.00 0.00 2.87
2489 2556 2.011122 CAGGTATCACTCGGGGGTAT 57.989 55.000 0.00 0.00 0.00 2.73
2509 2576 4.209288 GCTACATGCTATAAACACACTCCG 59.791 45.833 0.00 0.00 38.95 4.63
2537 2608 3.385577 CATTTTAGGCTCTCGGTAGCTC 58.614 50.000 9.32 1.50 42.37 4.09
2642 2892 0.036388 TCTGCTAAAGCCTTCCACCG 60.036 55.000 0.00 0.00 41.18 4.94
2644 2894 2.784347 ACTTCTGCTAAAGCCTTCCAC 58.216 47.619 0.00 0.00 41.18 4.02
2645 2895 4.844349 ATACTTCTGCTAAAGCCTTCCA 57.156 40.909 0.00 0.00 41.18 3.53
2646 2896 6.258947 CACTAATACTTCTGCTAAAGCCTTCC 59.741 42.308 0.00 0.00 41.18 3.46
2647 2897 7.042335 TCACTAATACTTCTGCTAAAGCCTTC 58.958 38.462 0.00 0.00 41.18 3.46
2650 2900 7.793927 AATCACTAATACTTCTGCTAAAGCC 57.206 36.000 0.00 0.00 41.18 4.35
2697 3234 0.996462 CAAATACCGTCGCGTCACAT 59.004 50.000 5.77 0.00 0.00 3.21
2704 3241 2.287129 ACAAACAACCAAATACCGTCGC 60.287 45.455 0.00 0.00 0.00 5.19
2788 3325 5.420739 GCCAATAAAAGGTCCCTAATTGTCA 59.579 40.000 11.78 0.00 0.00 3.58
2791 3328 5.930837 TGCCAATAAAAGGTCCCTAATTG 57.069 39.130 8.15 8.15 0.00 2.32
2798 3335 2.897326 ACCACTTGCCAATAAAAGGTCC 59.103 45.455 0.00 0.00 0.00 4.46
3033 3581 6.199393 CAAGAAAAACTACTTTCGTCAAGGG 58.801 40.000 2.83 0.00 39.76 3.95
3040 3588 5.154222 GGATGGCAAGAAAAACTACTTTCG 58.846 41.667 0.00 0.00 39.76 3.46
3041 3589 6.084326 TGGATGGCAAGAAAAACTACTTTC 57.916 37.500 0.00 0.00 35.85 2.62
3042 3590 6.670695 ATGGATGGCAAGAAAAACTACTTT 57.329 33.333 0.00 0.00 0.00 2.66
3043 3591 6.267471 TGAATGGATGGCAAGAAAAACTACTT 59.733 34.615 0.00 0.00 0.00 2.24
3044 3592 5.774690 TGAATGGATGGCAAGAAAAACTACT 59.225 36.000 0.00 0.00 0.00 2.57
3045 3593 5.863935 GTGAATGGATGGCAAGAAAAACTAC 59.136 40.000 0.00 0.00 0.00 2.73
3105 3653 8.141268 CACTATTGGTATGGACAAAACTGTTTT 58.859 33.333 12.50 12.50 0.00 2.43
3162 3710 6.888632 AGAGCAGGTTTCACAATTCTTGATAT 59.111 34.615 0.00 0.00 0.00 1.63
3211 3759 6.748333 TGGAGAAGTCAAGCATCTTATTTG 57.252 37.500 0.00 0.00 0.00 2.32
3212 3760 7.449704 AGTTTGGAGAAGTCAAGCATCTTATTT 59.550 33.333 0.00 0.00 0.00 1.40
3252 3800 6.459670 TCTTGATACCTAATGTTCTGCGTA 57.540 37.500 0.00 0.00 0.00 4.42
3263 3811 7.874016 TGCTTAAAGAACGTTCTTGATACCTAA 59.126 33.333 36.86 27.70 46.22 2.69
3275 3823 4.300189 TGTTGCATGCTTAAAGAACGTT 57.700 36.364 20.33 0.00 0.00 3.99
3287 3835 3.788333 ACACCTGATAATGTTGCATGC 57.212 42.857 11.82 11.82 0.00 4.06
3309 3857 8.844244 AGATGATTTGTTGATACTTATGAAGGC 58.156 33.333 0.00 0.00 0.00 4.35
3335 3883 7.014808 CCCTTGATAACCAAACTCCTTTTTACA 59.985 37.037 0.00 0.00 33.76 2.41
3348 3897 3.454858 AGAGAGCTCCCTTGATAACCAA 58.545 45.455 10.93 0.00 0.00 3.67
3356 3905 2.569404 AGGTTTGTAGAGAGCTCCCTTG 59.431 50.000 10.93 0.00 0.00 3.61
3376 3926 3.641434 AATGGACTGATGGGAGTTCAG 57.359 47.619 0.00 0.00 44.95 3.02
3475 4076 1.793820 AACCTTTGAGGGGGCTCAGG 61.794 60.000 0.00 0.00 40.58 3.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.