Multiple sequence alignment - TraesCS5A01G242300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G242300 chr5A 100.000 3044 0 0 1 3044 457541103 457538060 0.000000e+00 5622.0
1 TraesCS5A01G242300 chr5A 80.362 387 59 12 1299 1672 457881064 457881446 8.310000e-71 278.0
2 TraesCS5A01G242300 chr5D 87.612 2446 154 62 671 3012 355676509 355678909 0.000000e+00 2700.0
3 TraesCS5A01G242300 chr5D 81.034 522 32 24 129 609 355675876 355676371 1.340000e-93 353.0
4 TraesCS5A01G242300 chr5D 81.558 385 52 15 1299 1672 356189272 356189648 1.770000e-77 300.0
5 TraesCS5A01G242300 chr5D 97.222 36 1 0 637 672 355676416 355676451 9.110000e-06 62.1
6 TraesCS5A01G242300 chr5B 90.241 1455 55 26 667 2057 420385757 420387188 0.000000e+00 1820.0
7 TraesCS5A01G242300 chr5B 88.794 705 44 22 2353 3044 420387846 420388528 0.000000e+00 832.0
8 TraesCS5A01G242300 chr5B 86.928 612 40 12 92 672 420385100 420385702 0.000000e+00 651.0
9 TraesCS5A01G242300 chr5B 80.779 385 55 16 1299 1672 420856666 420856290 1.790000e-72 283.0
10 TraesCS5A01G242300 chr5B 79.412 306 28 22 2062 2345 420387228 420387520 1.860000e-42 183.0
11 TraesCS5A01G242300 chr2A 87.755 196 18 2 1806 1995 756837438 756837633 1.100000e-54 224.0
12 TraesCS5A01G242300 chr7D 75.138 181 29 5 1408 1586 24033016 24033182 1.510000e-08 71.3
13 TraesCS5A01G242300 chr7D 74.586 181 30 8 1408 1586 24156795 24156629 7.040000e-07 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G242300 chr5A 457538060 457541103 3043 True 5622.000000 5622 100.000000 1 3044 1 chr5A.!!$R1 3043
1 TraesCS5A01G242300 chr5D 355675876 355678909 3033 False 1038.366667 2700 88.622667 129 3012 3 chr5D.!!$F2 2883
2 TraesCS5A01G242300 chr5B 420385100 420388528 3428 False 871.500000 1820 86.343750 92 3044 4 chr5B.!!$F1 2952

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
157 162 0.038251 TCAGGCACGATCACTCACAC 60.038 55.0 0.0 0.0 0.0 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2113 2351 1.135721 ACCCAAATCCTCGCTACGTAC 59.864 52.381 0.0 0.0 0.0 3.67 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 5.497635 ACATTTTGTGGGTGCAATTTTTC 57.502 34.783 0.00 0.00 0.00 2.29
23 24 4.034975 ACATTTTGTGGGTGCAATTTTTCG 59.965 37.500 0.00 0.00 0.00 3.46
24 25 1.576356 TTGTGGGTGCAATTTTTCGC 58.424 45.000 0.00 0.00 0.00 4.70
25 26 0.249657 TGTGGGTGCAATTTTTCGCC 60.250 50.000 0.00 0.00 0.00 5.54
26 27 1.006805 TGGGTGCAATTTTTCGCCG 60.007 52.632 0.00 0.00 33.83 6.46
27 28 1.287503 GGGTGCAATTTTTCGCCGA 59.712 52.632 0.00 0.00 33.83 5.54
28 29 0.732538 GGGTGCAATTTTTCGCCGAG 60.733 55.000 0.00 0.00 33.83 4.63
29 30 0.732538 GGTGCAATTTTTCGCCGAGG 60.733 55.000 0.00 0.00 0.00 4.63
30 31 1.080839 TGCAATTTTTCGCCGAGGC 60.081 52.632 3.59 3.59 37.85 4.70
31 32 1.080839 GCAATTTTTCGCCGAGGCA 60.081 52.632 15.03 0.00 42.06 4.75
32 33 1.072666 GCAATTTTTCGCCGAGGCAG 61.073 55.000 15.03 7.22 42.06 4.85
33 34 1.072666 CAATTTTTCGCCGAGGCAGC 61.073 55.000 15.03 0.00 42.06 5.25
34 35 1.523154 AATTTTTCGCCGAGGCAGCA 61.523 50.000 15.03 0.00 42.06 4.41
35 36 1.523154 ATTTTTCGCCGAGGCAGCAA 61.523 50.000 15.03 0.64 42.06 3.91
36 37 2.128853 TTTTTCGCCGAGGCAGCAAG 62.129 55.000 15.03 0.00 42.06 4.01
39 40 4.819761 CGCCGAGGCAGCAAGCTA 62.820 66.667 15.03 0.00 44.79 3.32
40 41 2.436646 GCCGAGGCAGCAAGCTAA 60.437 61.111 9.58 0.00 44.79 3.09
41 42 2.754995 GCCGAGGCAGCAAGCTAAC 61.755 63.158 9.58 0.00 44.79 2.34
42 43 1.375908 CCGAGGCAGCAAGCTAACA 60.376 57.895 0.00 0.00 44.79 2.41
43 44 0.745845 CCGAGGCAGCAAGCTAACAT 60.746 55.000 0.00 0.00 44.79 2.71
44 45 1.089920 CGAGGCAGCAAGCTAACATT 58.910 50.000 0.00 0.00 44.79 2.71
45 46 1.202110 CGAGGCAGCAAGCTAACATTG 60.202 52.381 0.00 0.00 44.79 2.82
46 47 1.815003 GAGGCAGCAAGCTAACATTGT 59.185 47.619 0.00 0.00 44.79 2.71
47 48 2.229784 GAGGCAGCAAGCTAACATTGTT 59.770 45.455 7.30 7.30 44.79 2.83
48 49 2.629617 AGGCAGCAAGCTAACATTGTTT 59.370 40.909 7.45 0.00 44.79 2.83
49 50 3.070015 AGGCAGCAAGCTAACATTGTTTT 59.930 39.130 7.45 0.00 44.79 2.43
50 51 3.184986 GGCAGCAAGCTAACATTGTTTTG 59.815 43.478 7.45 7.60 44.79 2.44
51 52 3.803778 GCAGCAAGCTAACATTGTTTTGT 59.196 39.130 7.45 0.00 41.15 2.83
52 53 4.270808 GCAGCAAGCTAACATTGTTTTGTT 59.729 37.500 7.45 2.01 42.31 2.83
53 54 5.220643 GCAGCAAGCTAACATTGTTTTGTTT 60.221 36.000 7.45 3.40 40.25 2.83
54 55 6.675244 GCAGCAAGCTAACATTGTTTTGTTTT 60.675 34.615 7.45 0.00 40.25 2.43
55 56 6.683708 CAGCAAGCTAACATTGTTTTGTTTTG 59.316 34.615 7.45 10.56 40.25 2.44
56 57 6.371271 AGCAAGCTAACATTGTTTTGTTTTGT 59.629 30.769 7.45 0.00 40.25 2.83
57 58 7.020602 GCAAGCTAACATTGTTTTGTTTTGTT 58.979 30.769 7.45 0.00 40.25 2.83
58 59 7.536964 GCAAGCTAACATTGTTTTGTTTTGTTT 59.463 29.630 7.45 0.00 40.25 2.83
59 60 9.049974 CAAGCTAACATTGTTTTGTTTTGTTTC 57.950 29.630 7.45 0.00 40.25 2.78
60 61 8.546597 AGCTAACATTGTTTTGTTTTGTTTCT 57.453 26.923 7.45 0.00 40.25 2.52
61 62 8.442384 AGCTAACATTGTTTTGTTTTGTTTCTG 58.558 29.630 7.45 0.00 40.25 3.02
62 63 8.439286 GCTAACATTGTTTTGTTTTGTTTCTGA 58.561 29.630 7.45 0.00 40.25 3.27
65 66 9.444534 AACATTGTTTTGTTTTGTTTCTGAAAC 57.555 25.926 22.94 22.94 36.43 2.78
66 67 8.835439 ACATTGTTTTGTTTTGTTTCTGAAACT 58.165 25.926 27.75 6.04 41.90 2.66
67 68 9.105206 CATTGTTTTGTTTTGTTTCTGAAACTG 57.895 29.630 27.75 13.12 41.90 3.16
68 69 8.425577 TTGTTTTGTTTTGTTTCTGAAACTGA 57.574 26.923 27.75 16.79 41.90 3.41
69 70 7.846485 TGTTTTGTTTTGTTTCTGAAACTGAC 58.154 30.769 27.75 22.45 41.90 3.51
70 71 7.492669 TGTTTTGTTTTGTTTCTGAAACTGACA 59.507 29.630 27.75 24.12 41.90 3.58
71 72 8.331742 GTTTTGTTTTGTTTCTGAAACTGACAA 58.668 29.630 27.75 26.95 41.90 3.18
72 73 7.636259 TTGTTTTGTTTCTGAAACTGACAAG 57.364 32.000 27.75 0.00 41.90 3.16
73 74 6.744112 TGTTTTGTTTCTGAAACTGACAAGT 58.256 32.000 27.75 0.00 41.90 3.16
74 75 6.861055 TGTTTTGTTTCTGAAACTGACAAGTC 59.139 34.615 27.75 14.37 41.90 3.01
75 76 6.817765 TTTGTTTCTGAAACTGACAAGTCT 57.182 33.333 27.75 0.00 41.90 3.24
76 77 5.801350 TGTTTCTGAAACTGACAAGTCTG 57.199 39.130 27.75 5.67 41.90 3.51
77 78 5.487433 TGTTTCTGAAACTGACAAGTCTGA 58.513 37.500 27.75 6.21 41.90 3.27
78 79 5.937540 TGTTTCTGAAACTGACAAGTCTGAA 59.062 36.000 27.75 6.04 41.90 3.02
79 80 6.429692 TGTTTCTGAAACTGACAAGTCTGAAA 59.570 34.615 27.75 5.66 41.90 2.69
80 81 7.121168 TGTTTCTGAAACTGACAAGTCTGAAAT 59.879 33.333 27.75 0.41 41.90 2.17
81 82 7.630242 TTCTGAAACTGACAAGTCTGAAATT 57.370 32.000 13.06 5.91 34.77 1.82
82 83 7.251704 TCTGAAACTGACAAGTCTGAAATTC 57.748 36.000 13.06 12.88 34.77 2.17
83 84 6.260936 TCTGAAACTGACAAGTCTGAAATTCC 59.739 38.462 13.06 0.00 34.77 3.01
84 85 5.885352 TGAAACTGACAAGTCTGAAATTCCA 59.115 36.000 13.06 1.58 34.77 3.53
85 86 5.757850 AACTGACAAGTCTGAAATTCCAC 57.242 39.130 13.06 0.00 34.77 4.02
86 87 4.137543 ACTGACAAGTCTGAAATTCCACC 58.862 43.478 13.06 0.00 33.48 4.61
87 88 4.136796 CTGACAAGTCTGAAATTCCACCA 58.863 43.478 1.53 0.00 0.00 4.17
88 89 4.531854 TGACAAGTCTGAAATTCCACCAA 58.468 39.130 1.53 0.00 0.00 3.67
89 90 5.139727 TGACAAGTCTGAAATTCCACCAAT 58.860 37.500 1.53 0.00 0.00 3.16
90 91 5.241506 TGACAAGTCTGAAATTCCACCAATC 59.758 40.000 1.53 0.00 0.00 2.67
91 92 4.524328 ACAAGTCTGAAATTCCACCAATCC 59.476 41.667 0.00 0.00 0.00 3.01
92 93 4.387026 AGTCTGAAATTCCACCAATCCA 57.613 40.909 0.00 0.00 0.00 3.41
93 94 4.739793 AGTCTGAAATTCCACCAATCCAA 58.260 39.130 0.00 0.00 0.00 3.53
94 95 4.524328 AGTCTGAAATTCCACCAATCCAAC 59.476 41.667 0.00 0.00 0.00 3.77
95 96 4.524328 GTCTGAAATTCCACCAATCCAACT 59.476 41.667 0.00 0.00 0.00 3.16
96 97 5.011023 GTCTGAAATTCCACCAATCCAACTT 59.989 40.000 0.00 0.00 0.00 2.66
142 143 1.517257 CGCTGCCTCGTAACTCAGG 60.517 63.158 0.00 0.00 0.00 3.86
149 150 1.534175 CCTCGTAACTCAGGCACGATC 60.534 57.143 3.74 0.00 43.10 3.69
157 162 0.038251 TCAGGCACGATCACTCACAC 60.038 55.000 0.00 0.00 0.00 3.82
191 196 2.409055 GCGCCATCAATGCCACTGA 61.409 57.895 0.00 0.00 0.00 3.41
220 225 3.931247 TCCGTGAACACCACCCCG 61.931 66.667 0.00 0.00 42.76 5.73
234 239 0.615261 ACCCCGTCTTCTCTTCTCCC 60.615 60.000 0.00 0.00 0.00 4.30
235 240 0.324830 CCCCGTCTTCTCTTCTCCCT 60.325 60.000 0.00 0.00 0.00 4.20
339 386 4.712425 CTTTGCCTGTGCGCCAGC 62.712 66.667 17.35 13.70 40.06 4.85
464 515 2.036731 TCACCGGGACAGGTCGAT 59.963 61.111 6.32 0.00 43.89 3.59
470 521 2.291043 GGGACAGGTCGATGTGGGT 61.291 63.158 0.00 0.00 32.25 4.51
515 566 1.915769 AGCCAGACCAGACCACCTC 60.916 63.158 0.00 0.00 0.00 3.85
519 570 3.311110 GACCAGACCACCTCGGCA 61.311 66.667 0.00 0.00 39.03 5.69
594 645 1.892338 CCATTCAATGGCCGCTGTT 59.108 52.632 2.63 0.00 44.70 3.16
613 664 4.595629 CATTGTCGCGCTAATGCC 57.404 55.556 17.77 0.00 35.36 4.40
627 678 4.704833 TGCCCTTGCAGAGGTCGC 62.705 66.667 12.18 10.10 44.23 5.19
639 707 2.175811 GGTCGCGTGTGAATTGGC 59.824 61.111 5.77 0.00 0.00 4.52
730 858 0.944386 TGTGAGCTTTTTGGCGAGTC 59.056 50.000 0.00 0.00 37.29 3.36
735 863 1.207593 CTTTTTGGCGAGTCTGCGG 59.792 57.895 0.00 0.00 35.06 5.69
742 870 4.406173 CGAGTCTGCGGCGAGTGT 62.406 66.667 12.98 0.00 0.00 3.55
745 898 2.355837 GTCTGCGGCGAGTGTGAA 60.356 61.111 12.98 0.00 0.00 3.18
837 1014 0.179200 CCACCACGAAAATAGTGCGC 60.179 55.000 0.00 0.00 38.22 6.09
903 1080 4.748679 CGCGCCAAGCTCAAGCAC 62.749 66.667 0.00 0.00 45.59 4.40
915 1113 1.889105 CAAGCACCACACTCACGCT 60.889 57.895 0.00 0.00 33.45 5.07
934 1132 0.317854 TTCACTCGCTCACAGTCACG 60.318 55.000 0.00 0.00 0.00 4.35
936 1134 2.807045 CTCGCTCACAGTCACGCC 60.807 66.667 0.00 0.00 0.00 5.68
986 1187 3.418068 GCACTCACTGCCGCAGTC 61.418 66.667 23.33 8.19 43.43 3.51
987 1188 2.029518 CACTCACTGCCGCAGTCA 59.970 61.111 23.33 10.38 43.43 3.41
988 1189 2.025969 CACTCACTGCCGCAGTCAG 61.026 63.158 21.57 21.57 43.43 3.51
1029 1230 4.845580 ATCTTGCTCCCGGCGCTG 62.846 66.667 9.96 9.96 45.43 5.18
1041 1242 4.219999 GCGCTGCTCCTCCTCCTC 62.220 72.222 0.00 0.00 0.00 3.71
1048 1249 1.827789 CTCCTCCTCCTCCTCTGCG 60.828 68.421 0.00 0.00 0.00 5.18
1279 1480 2.269529 CGGATCTACCTCCCGAGCC 61.270 68.421 0.00 0.00 45.58 4.70
1347 1548 3.934391 CTTCGTGGTGGAGTCGGCC 62.934 68.421 0.00 0.00 0.00 6.13
1497 1698 2.594592 AAGTGGGTGCTCGCCAAC 60.595 61.111 0.00 0.00 32.57 3.77
1529 1730 4.742201 CGACCAGTGGCTGTCCCG 62.742 72.222 9.78 0.00 35.87 5.14
1557 1758 2.430610 CCTCTCCCGCCTCTTCCTG 61.431 68.421 0.00 0.00 0.00 3.86
1907 2108 1.651240 TACTACAGCACGCTCCGGAC 61.651 60.000 0.00 0.00 0.00 4.79
2039 2240 2.395690 CTTCATCAACCGCGACGC 59.604 61.111 8.23 10.49 0.00 5.19
2044 2245 4.789075 TCAACCGCGACGCCTAGC 62.789 66.667 15.34 0.00 0.00 3.42
2127 2365 1.930100 CGACGTACGTAGCGAGGAT 59.070 57.895 22.87 0.00 37.22 3.24
2128 2366 0.302890 CGACGTACGTAGCGAGGATT 59.697 55.000 22.87 0.00 37.22 3.01
2129 2367 1.267732 CGACGTACGTAGCGAGGATTT 60.268 52.381 22.87 0.00 37.22 2.17
2130 2368 2.107178 GACGTACGTAGCGAGGATTTG 58.893 52.381 22.87 0.00 0.00 2.32
2135 2373 0.870307 CGTAGCGAGGATTTGGGTCG 60.870 60.000 0.00 0.00 36.77 4.79
2136 2374 0.458669 GTAGCGAGGATTTGGGTCGA 59.541 55.000 0.00 0.00 35.70 4.20
2140 2378 1.330829 GCGAGGATTTGGGTCGATTTC 59.669 52.381 0.00 0.00 35.70 2.17
2145 2402 4.265073 AGGATTTGGGTCGATTTCTCTTG 58.735 43.478 0.00 0.00 0.00 3.02
2153 2410 3.186613 GGTCGATTTCTCTTGTTGTGTCC 59.813 47.826 0.00 0.00 0.00 4.02
2155 2412 3.071023 TCGATTTCTCTTGTTGTGTCCCT 59.929 43.478 0.00 0.00 0.00 4.20
2156 2413 3.187227 CGATTTCTCTTGTTGTGTCCCTG 59.813 47.826 0.00 0.00 0.00 4.45
2167 2424 2.184579 GTCCCTGCGGTGTAGAGC 59.815 66.667 0.00 0.00 0.00 4.09
2245 2508 2.488820 GCTCTACCACCGACCGAC 59.511 66.667 0.00 0.00 0.00 4.79
2247 2510 2.747460 TCTACCACCGACCGACCG 60.747 66.667 0.00 0.00 0.00 4.79
2248 2511 2.747460 CTACCACCGACCGACCGA 60.747 66.667 0.00 0.00 0.00 4.69
2249 2512 2.045045 TACCACCGACCGACCGAT 60.045 61.111 0.00 0.00 0.00 4.18
2250 2513 2.056481 CTACCACCGACCGACCGATC 62.056 65.000 0.00 0.00 0.00 3.69
2251 2514 2.541547 TACCACCGACCGACCGATCT 62.542 60.000 0.00 0.00 0.00 2.75
2252 2515 2.102357 CACCGACCGACCGATCTG 59.898 66.667 0.00 0.00 0.00 2.90
2253 2516 3.823330 ACCGACCGACCGATCTGC 61.823 66.667 0.00 0.00 0.00 4.26
2254 2517 4.907034 CCGACCGACCGATCTGCG 62.907 72.222 0.00 0.00 40.47 5.18
2281 2558 1.425412 ACCGTAGCTTGCAACGTTAG 58.575 50.000 0.00 0.00 37.40 2.34
2291 2571 0.093026 GCAACGTTAGCGCAGTAGTG 59.907 55.000 11.47 0.94 42.83 2.74
2293 2573 0.599558 AACGTTAGCGCAGTAGTGGA 59.400 50.000 11.47 0.00 42.83 4.02
2294 2574 0.109412 ACGTTAGCGCAGTAGTGGAC 60.109 55.000 11.47 0.00 42.83 4.02
2305 2585 0.320160 GTAGTGGACGGCCGTTTCTT 60.320 55.000 34.65 20.45 36.79 2.52
2337 2620 3.812053 AGTAGTAACTACCGAGCCGTATG 59.188 47.826 0.00 0.00 37.65 2.39
2362 2963 7.664731 TGCTACTCCTATATTAGTAGTGTCACC 59.335 40.741 16.90 6.01 44.61 4.02
2411 3012 2.683867 TGTCCGGTGTGTAACTTTTTGG 59.316 45.455 0.00 0.00 38.04 3.28
2435 3036 0.254178 CTGCTATGGTGAACTGGCCT 59.746 55.000 3.32 0.00 0.00 5.19
2465 3067 8.137437 GGAATTGGATGGTGTGATTTAGTATTG 58.863 37.037 0.00 0.00 0.00 1.90
2477 3079 3.795623 TTAGTATTGTCCGAGCTGGTC 57.204 47.619 0.00 0.00 39.52 4.02
2481 3083 0.534412 ATTGTCCGAGCTGGTCTCTG 59.466 55.000 5.23 0.00 39.70 3.35
2495 3097 1.812922 CTCTGTGTGGCGGCATCTC 60.813 63.158 17.19 10.45 0.00 2.75
2502 3104 3.330853 GGCGGCATCTCGTTAGCG 61.331 66.667 3.07 0.00 39.92 4.26
2604 3207 2.357517 CGGGGTGTCTGTCAGTGC 60.358 66.667 0.00 0.00 0.00 4.40
2627 3230 2.190578 CGGCATTCAGGGGACTCC 59.809 66.667 0.00 0.00 40.21 3.85
2770 3401 3.009140 CTCATCATGGCGTGCGAC 58.991 61.111 0.65 0.00 0.00 5.19
2771 3402 1.520120 CTCATCATGGCGTGCGACT 60.520 57.895 0.65 0.00 0.00 4.18
2834 3466 2.298661 CCCCGGTACTCCTTGGCTT 61.299 63.158 0.00 0.00 0.00 4.35
2897 3529 9.837525 CTTTAATCAACTGTACTACTACGTCTT 57.162 33.333 0.00 0.00 0.00 3.01
2923 3555 4.537015 ACTTTTGAGCTTGCACGAATTAC 58.463 39.130 0.00 0.00 0.00 1.89
2925 3557 4.829064 TTTGAGCTTGCACGAATTACTT 57.171 36.364 0.00 0.00 0.00 2.24
2926 3558 4.829064 TTGAGCTTGCACGAATTACTTT 57.171 36.364 0.00 0.00 0.00 2.66
2927 3559 4.404507 TGAGCTTGCACGAATTACTTTC 57.595 40.909 0.00 0.00 0.00 2.62
2928 3560 3.188460 TGAGCTTGCACGAATTACTTTCC 59.812 43.478 0.00 0.00 0.00 3.13
2929 3561 2.159627 AGCTTGCACGAATTACTTTCCG 59.840 45.455 0.00 0.00 0.00 4.30
2930 3562 2.505866 CTTGCACGAATTACTTTCCGC 58.494 47.619 0.00 0.00 32.46 5.54
2931 3563 1.514003 TGCACGAATTACTTTCCGCA 58.486 45.000 0.00 0.00 37.08 5.69
2932 3564 1.195900 TGCACGAATTACTTTCCGCAC 59.804 47.619 0.00 0.00 35.46 5.34
2933 3565 1.785518 GCACGAATTACTTTCCGCACG 60.786 52.381 0.00 0.00 32.24 5.34
2934 3566 1.722464 CACGAATTACTTTCCGCACGA 59.278 47.619 0.00 0.00 0.00 4.35
2935 3567 1.723003 ACGAATTACTTTCCGCACGAC 59.277 47.619 0.00 0.00 0.00 4.34
2936 3568 1.266211 CGAATTACTTTCCGCACGACG 60.266 52.381 0.00 0.00 43.15 5.12
2937 3569 0.441145 AATTACTTTCCGCACGACGC 59.559 50.000 0.00 0.00 41.76 5.19
2938 3570 1.356527 ATTACTTTCCGCACGACGCC 61.357 55.000 0.00 0.00 41.76 5.68
2939 3571 2.696409 TTACTTTCCGCACGACGCCA 62.696 55.000 0.00 0.00 41.76 5.69
2940 3572 2.495366 TACTTTCCGCACGACGCCAT 62.495 55.000 0.00 0.00 41.76 4.40
2941 3573 3.367051 CTTTCCGCACGACGCCATG 62.367 63.158 0.00 0.00 41.76 3.66
2960 3592 3.039202 GCACTTCCCGTCGCCAATG 62.039 63.158 0.00 0.00 0.00 2.82
2961 3593 2.746277 ACTTCCCGTCGCCAATGC 60.746 61.111 0.00 0.00 0.00 3.56
2964 3596 3.969250 TTCCCGTCGCCAATGCCTC 62.969 63.158 0.00 0.00 0.00 4.70
2973 3619 0.247460 GCCAATGCCTCCCACTTTTC 59.753 55.000 0.00 0.00 0.00 2.29
2975 3621 0.527565 CAATGCCTCCCACTTTTCCG 59.472 55.000 0.00 0.00 0.00 4.30
2976 3622 0.112412 AATGCCTCCCACTTTTCCGT 59.888 50.000 0.00 0.00 0.00 4.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 4.034975 CGAAAAATTGCACCCACAAAATGT 59.965 37.500 0.00 0.00 32.27 2.71
1 2 4.525686 CGAAAAATTGCACCCACAAAATG 58.474 39.130 0.00 0.00 32.27 2.32
3 4 2.352960 GCGAAAAATTGCACCCACAAAA 59.647 40.909 0.00 0.00 32.27 2.44
4 5 1.936547 GCGAAAAATTGCACCCACAAA 59.063 42.857 0.00 0.00 32.27 2.83
5 6 1.576356 GCGAAAAATTGCACCCACAA 58.424 45.000 0.00 0.00 0.00 3.33
6 7 0.249657 GGCGAAAAATTGCACCCACA 60.250 50.000 0.00 0.00 0.00 4.17
7 8 1.281566 CGGCGAAAAATTGCACCCAC 61.282 55.000 0.00 0.00 0.00 4.61
8 9 1.006805 CGGCGAAAAATTGCACCCA 60.007 52.632 0.00 0.00 0.00 4.51
9 10 0.732538 CTCGGCGAAAAATTGCACCC 60.733 55.000 12.13 0.00 0.00 4.61
10 11 0.732538 CCTCGGCGAAAAATTGCACC 60.733 55.000 12.13 0.00 0.00 5.01
11 12 1.344226 GCCTCGGCGAAAAATTGCAC 61.344 55.000 12.13 0.00 0.00 4.57
12 13 1.080839 GCCTCGGCGAAAAATTGCA 60.081 52.632 12.13 0.00 0.00 4.08
13 14 1.072666 CTGCCTCGGCGAAAAATTGC 61.073 55.000 12.13 7.57 45.51 3.56
14 15 1.072666 GCTGCCTCGGCGAAAAATTG 61.073 55.000 12.13 0.00 45.51 2.32
15 16 1.212751 GCTGCCTCGGCGAAAAATT 59.787 52.632 12.13 0.00 45.51 1.82
16 17 1.523154 TTGCTGCCTCGGCGAAAAAT 61.523 50.000 12.13 0.00 45.51 1.82
17 18 2.128853 CTTGCTGCCTCGGCGAAAAA 62.129 55.000 12.13 0.00 45.51 1.94
18 19 2.593148 TTGCTGCCTCGGCGAAAA 60.593 55.556 12.13 0.00 45.51 2.29
19 20 3.049674 CTTGCTGCCTCGGCGAAA 61.050 61.111 12.13 0.00 45.51 3.46
22 23 4.819761 TAGCTTGCTGCCTCGGCG 62.820 66.667 0.00 0.00 45.51 6.46
23 24 2.436646 TTAGCTTGCTGCCTCGGC 60.437 61.111 5.26 0.00 44.23 5.54
24 25 0.745845 ATGTTAGCTTGCTGCCTCGG 60.746 55.000 5.26 0.00 44.23 4.63
25 26 1.089920 AATGTTAGCTTGCTGCCTCG 58.910 50.000 5.26 0.00 44.23 4.63
26 27 1.815003 ACAATGTTAGCTTGCTGCCTC 59.185 47.619 5.26 0.00 44.23 4.70
27 28 1.915141 ACAATGTTAGCTTGCTGCCT 58.085 45.000 5.26 0.00 44.23 4.75
28 29 2.730550 AACAATGTTAGCTTGCTGCC 57.269 45.000 5.26 0.00 44.23 4.85
29 30 3.803778 ACAAAACAATGTTAGCTTGCTGC 59.196 39.130 0.00 0.00 43.29 5.25
30 31 5.971895 AACAAAACAATGTTAGCTTGCTG 57.028 34.783 0.00 0.00 41.56 4.41
31 32 6.371271 ACAAAACAAAACAATGTTAGCTTGCT 59.629 30.769 0.00 0.00 42.49 3.91
32 33 6.541969 ACAAAACAAAACAATGTTAGCTTGC 58.458 32.000 0.00 0.00 42.49 4.01
33 34 8.947304 AAACAAAACAAAACAATGTTAGCTTG 57.053 26.923 0.00 3.28 42.49 4.01
34 35 8.998377 AGAAACAAAACAAAACAATGTTAGCTT 58.002 25.926 0.00 0.00 42.49 3.74
35 36 8.442384 CAGAAACAAAACAAAACAATGTTAGCT 58.558 29.630 0.00 0.00 42.49 3.32
36 37 8.439286 TCAGAAACAAAACAAAACAATGTTAGC 58.561 29.630 0.00 0.00 42.49 3.09
39 40 9.444534 GTTTCAGAAACAAAACAAAACAATGTT 57.555 25.926 19.46 0.00 41.74 2.71
40 41 8.835439 AGTTTCAGAAACAAAACAAAACAATGT 58.165 25.926 24.85 0.00 43.79 2.71
41 42 9.105206 CAGTTTCAGAAACAAAACAAAACAATG 57.895 29.630 24.85 8.33 43.79 2.82
42 43 9.050601 TCAGTTTCAGAAACAAAACAAAACAAT 57.949 25.926 24.85 0.01 43.79 2.71
43 44 8.331742 GTCAGTTTCAGAAACAAAACAAAACAA 58.668 29.630 24.85 0.00 43.79 2.83
44 45 7.492669 TGTCAGTTTCAGAAACAAAACAAAACA 59.507 29.630 24.85 14.00 43.79 2.83
45 46 7.846485 TGTCAGTTTCAGAAACAAAACAAAAC 58.154 30.769 24.85 12.12 43.79 2.43
46 47 8.425577 TTGTCAGTTTCAGAAACAAAACAAAA 57.574 26.923 24.85 10.68 43.79 2.44
47 48 7.708752 ACTTGTCAGTTTCAGAAACAAAACAAA 59.291 29.630 24.85 14.58 43.79 2.83
48 49 7.206687 ACTTGTCAGTTTCAGAAACAAAACAA 58.793 30.769 24.85 24.65 43.79 2.83
49 50 6.744112 ACTTGTCAGTTTCAGAAACAAAACA 58.256 32.000 24.85 20.68 43.79 2.83
50 51 7.061094 CAGACTTGTCAGTTTCAGAAACAAAAC 59.939 37.037 24.85 18.81 43.79 2.43
51 52 7.040755 TCAGACTTGTCAGTTTCAGAAACAAAA 60.041 33.333 24.85 13.23 43.79 2.44
52 53 6.429692 TCAGACTTGTCAGTTTCAGAAACAAA 59.570 34.615 24.85 11.54 43.79 2.83
53 54 5.937540 TCAGACTTGTCAGTTTCAGAAACAA 59.062 36.000 24.85 12.17 43.79 2.83
54 55 5.487433 TCAGACTTGTCAGTTTCAGAAACA 58.513 37.500 24.85 5.15 43.79 2.83
55 56 6.422776 TTCAGACTTGTCAGTTTCAGAAAC 57.577 37.500 17.11 17.11 41.69 2.78
56 57 7.630242 ATTTCAGACTTGTCAGTTTCAGAAA 57.370 32.000 3.49 0.00 31.22 2.52
57 58 7.201732 GGAATTTCAGACTTGTCAGTTTCAGAA 60.202 37.037 3.49 0.00 31.22 3.02
58 59 6.260936 GGAATTTCAGACTTGTCAGTTTCAGA 59.739 38.462 3.49 0.00 31.22 3.27
59 60 6.038603 TGGAATTTCAGACTTGTCAGTTTCAG 59.961 38.462 3.49 0.00 31.22 3.02
60 61 5.885352 TGGAATTTCAGACTTGTCAGTTTCA 59.115 36.000 3.49 0.00 31.22 2.69
61 62 6.202226 GTGGAATTTCAGACTTGTCAGTTTC 58.798 40.000 3.49 2.11 31.22 2.78
62 63 5.067805 GGTGGAATTTCAGACTTGTCAGTTT 59.932 40.000 3.49 0.00 31.22 2.66
63 64 4.580580 GGTGGAATTTCAGACTTGTCAGTT 59.419 41.667 3.49 0.00 31.22 3.16
64 65 4.137543 GGTGGAATTTCAGACTTGTCAGT 58.862 43.478 3.49 0.00 35.17 3.41
65 66 4.136796 TGGTGGAATTTCAGACTTGTCAG 58.863 43.478 3.49 0.00 0.00 3.51
66 67 4.163441 TGGTGGAATTTCAGACTTGTCA 57.837 40.909 3.49 0.00 0.00 3.58
67 68 5.335976 GGATTGGTGGAATTTCAGACTTGTC 60.336 44.000 0.00 0.00 0.00 3.18
68 69 4.524328 GGATTGGTGGAATTTCAGACTTGT 59.476 41.667 0.00 0.00 0.00 3.16
69 70 4.523943 TGGATTGGTGGAATTTCAGACTTG 59.476 41.667 0.00 0.00 0.00 3.16
70 71 4.739793 TGGATTGGTGGAATTTCAGACTT 58.260 39.130 0.00 0.00 0.00 3.01
71 72 4.387026 TGGATTGGTGGAATTTCAGACT 57.613 40.909 0.00 0.00 0.00 3.24
72 73 4.524328 AGTTGGATTGGTGGAATTTCAGAC 59.476 41.667 0.00 0.00 0.00 3.51
73 74 4.739793 AGTTGGATTGGTGGAATTTCAGA 58.260 39.130 0.00 0.00 0.00 3.27
74 75 5.232463 CAAGTTGGATTGGTGGAATTTCAG 58.768 41.667 0.00 0.00 0.00 3.02
75 76 4.502950 GCAAGTTGGATTGGTGGAATTTCA 60.503 41.667 4.75 0.00 0.00 2.69
76 77 3.996363 GCAAGTTGGATTGGTGGAATTTC 59.004 43.478 4.75 0.00 0.00 2.17
77 78 3.244526 GGCAAGTTGGATTGGTGGAATTT 60.245 43.478 4.75 0.00 0.00 1.82
78 79 2.302733 GGCAAGTTGGATTGGTGGAATT 59.697 45.455 4.75 0.00 0.00 2.17
79 80 1.901833 GGCAAGTTGGATTGGTGGAAT 59.098 47.619 4.75 0.00 0.00 3.01
80 81 1.133199 AGGCAAGTTGGATTGGTGGAA 60.133 47.619 4.75 0.00 0.00 3.53
81 82 0.482446 AGGCAAGTTGGATTGGTGGA 59.518 50.000 4.75 0.00 0.00 4.02
82 83 0.604578 CAGGCAAGTTGGATTGGTGG 59.395 55.000 4.75 0.00 0.00 4.61
83 84 1.619654 TCAGGCAAGTTGGATTGGTG 58.380 50.000 4.75 0.00 0.00 4.17
84 85 2.380064 TTCAGGCAAGTTGGATTGGT 57.620 45.000 4.75 0.00 0.00 3.67
85 86 3.094572 AGATTCAGGCAAGTTGGATTGG 58.905 45.455 4.75 0.00 0.00 3.16
86 87 4.219070 TGAAGATTCAGGCAAGTTGGATTG 59.781 41.667 4.75 0.00 32.50 2.67
87 88 4.219288 GTGAAGATTCAGGCAAGTTGGATT 59.781 41.667 4.75 0.00 37.98 3.01
88 89 3.760684 GTGAAGATTCAGGCAAGTTGGAT 59.239 43.478 4.75 0.00 37.98 3.41
89 90 3.149196 GTGAAGATTCAGGCAAGTTGGA 58.851 45.455 4.75 0.00 37.98 3.53
90 91 2.095567 CGTGAAGATTCAGGCAAGTTGG 60.096 50.000 4.75 0.00 37.98 3.77
91 92 2.095567 CCGTGAAGATTCAGGCAAGTTG 60.096 50.000 9.25 0.00 40.64 3.16
92 93 2.154462 CCGTGAAGATTCAGGCAAGTT 58.846 47.619 9.25 0.00 40.64 2.66
93 94 1.611673 CCCGTGAAGATTCAGGCAAGT 60.612 52.381 9.25 0.00 40.64 3.16
94 95 1.089920 CCCGTGAAGATTCAGGCAAG 58.910 55.000 9.25 0.00 40.64 4.01
95 96 0.690192 TCCCGTGAAGATTCAGGCAA 59.310 50.000 9.25 0.00 40.64 4.52
96 97 0.036388 GTCCCGTGAAGATTCAGGCA 60.036 55.000 9.25 0.00 40.64 4.75
118 119 2.106074 TTACGAGGCAGCGGCATTG 61.106 57.895 11.88 10.49 43.71 2.82
119 120 2.106683 GTTACGAGGCAGCGGCATT 61.107 57.895 11.88 0.00 43.71 3.56
142 143 1.073216 CCTCGTGTGAGTGATCGTGC 61.073 60.000 0.00 0.00 40.85 5.34
149 150 2.675844 TGTTTTGTTCCTCGTGTGAGTG 59.324 45.455 0.00 0.00 40.85 3.51
157 162 0.660300 GCGCCTTGTTTTGTTCCTCG 60.660 55.000 0.00 0.00 0.00 4.63
220 225 1.474879 CACGGAGGGAGAAGAGAAGAC 59.525 57.143 0.00 0.00 0.00 3.01
234 239 2.165301 GGAATTCGCGGTCACGGAG 61.165 63.158 6.13 0.00 41.36 4.63
235 240 2.125832 GGAATTCGCGGTCACGGA 60.126 61.111 6.13 0.00 41.36 4.69
246 269 6.074142 GCCATAGAAAATTCATTGCGGAATTC 60.074 38.462 0.00 0.00 44.47 2.17
258 281 0.663153 AGCCGCGCCATAGAAAATTC 59.337 50.000 0.00 0.00 0.00 2.17
259 282 0.663153 GAGCCGCGCCATAGAAAATT 59.337 50.000 0.00 0.00 0.00 1.82
260 283 1.166531 GGAGCCGCGCCATAGAAAAT 61.167 55.000 8.47 0.00 0.00 1.82
261 284 1.817941 GGAGCCGCGCCATAGAAAA 60.818 57.895 8.47 0.00 0.00 2.29
262 285 2.203015 GGAGCCGCGCCATAGAAA 60.203 61.111 8.47 0.00 0.00 2.52
405 452 4.269523 TGTGGGTGTGGCCTCAGC 62.270 66.667 25.14 25.14 37.43 4.26
493 544 2.348998 GGTCTGGTCTGGCTGGTG 59.651 66.667 0.00 0.00 0.00 4.17
621 672 2.325082 GCCAATTCACACGCGACCT 61.325 57.895 15.93 0.00 0.00 3.85
622 673 2.175811 GCCAATTCACACGCGACC 59.824 61.111 15.93 0.00 0.00 4.79
625 676 1.082431 TTTCGCCAATTCACACGCG 60.082 52.632 3.53 3.53 45.76 6.01
627 678 0.591170 AGGTTTCGCCAATTCACACG 59.409 50.000 0.00 0.00 40.61 4.49
639 707 3.568007 TGAACCCAAAGATTCAGGTTTCG 59.432 43.478 0.00 0.00 42.60 3.46
730 858 3.782244 GCTTCACACTCGCCGCAG 61.782 66.667 0.00 0.00 0.00 5.18
735 863 2.743928 CCTGGGCTTCACACTCGC 60.744 66.667 0.00 0.00 0.00 5.03
736 864 2.743928 GCCTGGGCTTCACACTCG 60.744 66.667 4.12 0.00 38.26 4.18
737 865 1.968540 GTGCCTGGGCTTCACACTC 60.969 63.158 13.05 0.00 42.51 3.51
738 866 2.072874 ATGTGCCTGGGCTTCACACT 62.073 55.000 13.05 0.00 42.59 3.55
739 867 1.604593 ATGTGCCTGGGCTTCACAC 60.605 57.895 13.05 2.89 42.59 3.82
740 868 1.604308 CATGTGCCTGGGCTTCACA 60.604 57.895 13.05 9.16 43.72 3.58
742 870 2.677524 GCATGTGCCTGGGCTTCA 60.678 61.111 13.05 11.77 42.51 3.02
903 1080 1.278172 CGAGTGAAGCGTGAGTGTGG 61.278 60.000 0.00 0.00 0.00 4.17
915 1113 0.317854 CGTGACTGTGAGCGAGTGAA 60.318 55.000 0.00 0.00 0.00 3.18
983 1184 3.241530 TGGCTTCCGGCACTGACT 61.242 61.111 0.00 0.00 44.01 3.41
1029 1230 2.133641 GCAGAGGAGGAGGAGGAGC 61.134 68.421 0.00 0.00 0.00 4.70
1039 1240 4.233635 GCAATGCGCGCAGAGGAG 62.234 66.667 38.44 24.74 0.00 3.69
1222 1423 2.202570 GTCGATGGTGACGTCCCG 60.203 66.667 14.12 8.83 43.77 5.14
1347 1548 2.012051 GCGTGGTAGATGGGGTTGAAG 61.012 57.143 0.00 0.00 0.00 3.02
1512 1713 4.742201 CGGGACAGCCACTGGTCG 62.742 72.222 0.00 0.00 35.51 4.79
1529 1730 3.525545 GGGAGAGGTCGCCGTACC 61.526 72.222 0.00 0.00 40.06 3.34
1542 1743 4.168291 GCCAGGAAGAGGCGGGAG 62.168 72.222 0.00 0.00 43.15 4.30
1575 1776 4.382114 TTGTGCGCGATGTTGCCG 62.382 61.111 12.10 0.00 0.00 5.69
1653 1854 1.142097 GAAGTAGGGGTCGAGCAGC 59.858 63.158 17.59 0.00 0.00 5.25
1656 1857 1.677637 CCTGGAAGTAGGGGTCGAGC 61.678 65.000 5.93 5.93 34.06 5.03
2111 2349 1.202222 CCAAATCCTCGCTACGTACGT 60.202 52.381 25.98 25.98 0.00 3.57
2112 2350 1.474017 CCAAATCCTCGCTACGTACG 58.526 55.000 15.01 15.01 0.00 3.67
2113 2351 1.135721 ACCCAAATCCTCGCTACGTAC 59.864 52.381 0.00 0.00 0.00 3.67
2127 2365 4.036262 CACAACAAGAGAAATCGACCCAAA 59.964 41.667 0.00 0.00 0.00 3.28
2128 2366 3.563808 CACAACAAGAGAAATCGACCCAA 59.436 43.478 0.00 0.00 0.00 4.12
2129 2367 3.138304 CACAACAAGAGAAATCGACCCA 58.862 45.455 0.00 0.00 0.00 4.51
2130 2368 3.139077 ACACAACAAGAGAAATCGACCC 58.861 45.455 0.00 0.00 0.00 4.46
2135 2373 3.057946 GCAGGGACACAACAAGAGAAATC 60.058 47.826 0.00 0.00 0.00 2.17
2136 2374 2.887152 GCAGGGACACAACAAGAGAAAT 59.113 45.455 0.00 0.00 0.00 2.17
2140 2378 2.238353 CGCAGGGACACAACAAGAG 58.762 57.895 0.00 0.00 0.00 2.85
2156 2413 4.183686 TACCGCGCTCTACACCGC 62.184 66.667 5.56 0.00 46.17 5.68
2182 2439 2.593956 GCTGGGGAGGAACCGAACT 61.594 63.158 0.00 0.00 40.11 3.01
2183 2440 2.046217 GCTGGGGAGGAACCGAAC 60.046 66.667 0.00 0.00 40.11 3.95
2227 2490 2.753043 TCGGTCGGTGGTAGAGCC 60.753 66.667 0.00 0.00 32.98 4.70
2247 2510 1.081108 CGGTAGCTAGCCGCAGATC 60.081 63.158 16.98 0.00 42.82 2.75
2248 2511 3.043419 CGGTAGCTAGCCGCAGAT 58.957 61.111 16.98 0.00 42.82 2.90
2260 2523 1.425412 AACGTTGCAAGCTACGGTAG 58.575 50.000 26.80 10.83 46.12 3.18
2261 2524 2.598589 CTAACGTTGCAAGCTACGGTA 58.401 47.619 26.80 24.11 46.12 4.02
2262 2525 1.425412 CTAACGTTGCAAGCTACGGT 58.575 50.000 26.80 24.27 46.12 4.83
2263 2526 0.094730 GCTAACGTTGCAAGCTACGG 59.905 55.000 26.80 14.14 46.12 4.02
2264 2527 0.246757 CGCTAACGTTGCAAGCTACG 60.247 55.000 23.17 23.17 46.92 3.51
2265 2528 0.518559 GCGCTAACGTTGCAAGCTAC 60.519 55.000 17.04 7.55 42.83 3.58
2291 2571 2.966309 CTGCAAGAAACGGCCGTCC 61.966 63.158 34.29 25.55 34.07 4.79
2293 2573 2.203153 ACTGCAAGAAACGGCCGT 60.203 55.556 28.70 28.70 37.43 5.68
2294 2574 2.556287 GACTGCAAGAAACGGCCG 59.444 61.111 26.86 26.86 37.43 6.13
2305 2585 1.254026 AGTTACTACTGGCGACTGCA 58.746 50.000 0.00 0.00 45.35 4.41
2362 2963 6.033619 GCAATCGCTAGGTAAATATAGTGACG 59.966 42.308 0.00 0.00 40.33 4.35
2411 3012 2.005451 CAGTTCACCATAGCAGCAGTC 58.995 52.381 0.00 0.00 0.00 3.51
2435 3036 3.235750 TCACACCATCCAATTCCACAA 57.764 42.857 0.00 0.00 0.00 3.33
2477 3079 1.812922 GAGATGCCGCCACACAGAG 60.813 63.158 0.00 0.00 0.00 3.35
2481 3083 1.421410 CTAACGAGATGCCGCCACAC 61.421 60.000 0.00 0.00 0.00 3.82
2495 3097 0.589729 GCATGATGCCAACGCTAACG 60.590 55.000 6.04 0.00 40.88 3.18
2502 3104 1.802715 GCACGTGCATGATGCCAAC 60.803 57.895 34.52 6.38 44.23 3.77
2528 3131 2.434884 CACACATTCTCCGCCGCT 60.435 61.111 0.00 0.00 0.00 5.52
2585 3188 3.626924 ACTGACAGACACCCCGCC 61.627 66.667 10.08 0.00 0.00 6.13
2627 3230 0.043053 CGCCGATGATGCTTACAACG 60.043 55.000 0.00 0.00 34.34 4.10
2754 3385 0.389025 ATAGTCGCACGCCATGATGA 59.611 50.000 0.00 0.00 0.00 2.92
2820 3451 2.561478 TTGACAAGCCAAGGAGTACC 57.439 50.000 0.00 0.00 0.00 3.34
2834 3466 3.092301 TGTGGGTGTGAACATTTTGACA 58.908 40.909 0.00 0.00 0.00 3.58
2890 3522 4.595762 AGCTCAAAAGTACCAAGACGTA 57.404 40.909 0.00 0.00 0.00 3.57
2891 3523 3.470645 AGCTCAAAAGTACCAAGACGT 57.529 42.857 0.00 0.00 0.00 4.34
2892 3524 3.607078 GCAAGCTCAAAAGTACCAAGACG 60.607 47.826 0.00 0.00 0.00 4.18
2897 3529 1.601903 CGTGCAAGCTCAAAAGTACCA 59.398 47.619 0.00 0.00 0.00 3.25
2930 3562 3.027170 GAAGTGCCATGGCGTCGTG 62.027 63.158 30.87 1.14 45.51 4.35
2931 3563 2.742372 GAAGTGCCATGGCGTCGT 60.742 61.111 30.87 23.11 45.51 4.34
2932 3564 3.499737 GGAAGTGCCATGGCGTCG 61.500 66.667 30.87 0.00 45.51 5.12
2933 3565 3.134127 GGGAAGTGCCATGGCGTC 61.134 66.667 30.87 25.29 45.51 5.19
2936 3568 3.134127 GACGGGAAGTGCCATGGC 61.134 66.667 30.54 30.54 38.95 4.40
2937 3569 2.819595 CGACGGGAAGTGCCATGG 60.820 66.667 7.63 7.63 38.95 3.66
2938 3570 3.499737 GCGACGGGAAGTGCCATG 61.500 66.667 0.00 0.00 38.95 3.66
2939 3571 4.778143 GGCGACGGGAAGTGCCAT 62.778 66.667 0.00 0.00 42.58 4.40
2942 3574 2.746277 ATTGGCGACGGGAAGTGC 60.746 61.111 0.00 0.00 0.00 4.40
2957 3589 0.112412 ACGGAAAAGTGGGAGGCATT 59.888 50.000 0.00 0.00 0.00 3.56
2958 3590 0.322546 GACGGAAAAGTGGGAGGCAT 60.323 55.000 0.00 0.00 0.00 4.40
2960 3592 2.033194 CGACGGAAAAGTGGGAGGC 61.033 63.158 0.00 0.00 0.00 4.70
2961 3593 1.375523 CCGACGGAAAAGTGGGAGG 60.376 63.158 8.64 0.00 41.73 4.30
2964 3596 2.004733 GATTACCGACGGAAAAGTGGG 58.995 52.381 23.38 0.00 44.24 4.61
2973 3619 1.262683 GTACCGAGAGATTACCGACGG 59.737 57.143 13.61 13.61 44.77 4.79
2975 3621 1.333613 GCGTACCGAGAGATTACCGAC 60.334 57.143 0.00 0.00 0.00 4.79
2976 3622 0.940126 GCGTACCGAGAGATTACCGA 59.060 55.000 0.00 0.00 0.00 4.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.