Multiple sequence alignment - TraesCS5A01G242200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G242200 chr5A 100.000 4299 0 0 1 4299 457519018 457523316 0.000000e+00 7939.0
1 TraesCS5A01G242200 chr5D 96.590 3372 87 15 854 4218 355739810 355736460 0.000000e+00 5565.0
2 TraesCS5A01G242200 chr5D 83.521 801 103 13 7 803 355740979 355740204 0.000000e+00 721.0
3 TraesCS5A01G242200 chr5D 91.765 85 7 0 4215 4299 355736424 355736340 7.550000e-23 119.0
4 TraesCS5A01G242200 chr5B 96.571 2741 78 11 854 3580 420471839 420469101 0.000000e+00 4527.0
5 TraesCS5A01G242200 chr5B 92.550 698 41 5 3523 4218 420469080 420468392 0.000000e+00 990.0
6 TraesCS5A01G242200 chr5B 92.982 57 4 0 706 762 420472021 420471965 2.750000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G242200 chr5A 457519018 457523316 4298 False 7939.000000 7939 100.000000 1 4299 1 chr5A.!!$F1 4298
1 TraesCS5A01G242200 chr5D 355736340 355740979 4639 True 2135.000000 5565 90.625333 7 4299 3 chr5D.!!$R1 4292
2 TraesCS5A01G242200 chr5B 420468392 420472021 3629 True 1867.066667 4527 94.034333 706 4218 3 chr5B.!!$R1 3512

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
250 251 0.108615 AAGAACGACATGAGAGGGCG 60.109 55.000 0.0 0.0 0.00 6.13 F
555 557 0.109597 GGGCTTGAAGTTGCGATGTG 60.110 55.000 0.0 0.0 0.00 3.21 F
599 601 0.515127 CGCGTGTTATTGAGTTGCCA 59.485 50.000 0.0 0.0 0.00 4.92 F
1294 1677 1.306148 ATCATGTTCTGATGCAGCCG 58.694 50.000 0.0 0.0 43.15 5.52 F
1367 1750 2.012673 GTCCTCATGTGTGCTGGATTC 58.987 52.381 0.0 0.0 32.93 2.52 F
2869 3257 0.698818 AACACTTAGGGAAGGCTGGG 59.301 55.000 0.0 0.0 36.95 4.45 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1472 1858 0.829333 ATCTCATTCTCTGCGCCAGT 59.171 50.000 4.18 0.0 32.61 4.00 R
1953 2341 1.021202 TTGACACTTTCGTGCCTTGG 58.979 50.000 0.00 0.0 45.10 3.61 R
2320 2708 1.614317 CCAGCTTTACCAAGTCCCCTG 60.614 57.143 0.00 0.0 31.86 4.45 R
2869 3257 0.585357 CTACAGCATCATCAAGCCGC 59.415 55.000 0.00 0.0 0.00 6.53 R
3178 3566 1.651240 CCTCCTCAAACATGCCTGCG 61.651 60.000 0.00 0.0 0.00 5.18 R
3748 4222 0.743701 AAACACGGCAACACGTACCA 60.744 50.000 0.00 0.0 46.75 3.25 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 30 6.181206 AGATGCTTAGGATAAAAGGAGTCC 57.819 41.667 0.00 0.00 0.00 3.85
32 33 5.030147 TGCTTAGGATAAAAGGAGTCCTGA 58.970 41.667 13.89 1.36 42.20 3.86
35 36 6.183361 GCTTAGGATAAAAGGAGTCCTGATCA 60.183 42.308 13.89 0.00 42.20 2.92
43 44 3.652055 AGGAGTCCTGATCAGCTATGTT 58.348 45.455 17.76 0.00 29.57 2.71
48 49 3.106827 TCCTGATCAGCTATGTTGGTGA 58.893 45.455 17.76 2.16 46.39 4.02
50 51 4.019411 TCCTGATCAGCTATGTTGGTGAAA 60.019 41.667 17.76 0.00 45.65 2.69
52 53 5.163683 CCTGATCAGCTATGTTGGTGAAAAG 60.164 44.000 17.76 0.00 45.65 2.27
66 67 5.996644 TGGTGAAAAGAAGTCCTTGTCTTA 58.003 37.500 0.00 0.00 39.40 2.10
99 100 5.995897 GTCTTGTGTAACCTTCCTTGTATGT 59.004 40.000 0.00 0.00 34.36 2.29
104 105 5.408604 GTGTAACCTTCCTTGTATGTGTCAG 59.591 44.000 0.00 0.00 0.00 3.51
107 108 2.571653 CCTTCCTTGTATGTGTCAGGGA 59.428 50.000 0.00 0.00 38.87 4.20
108 109 3.200825 CCTTCCTTGTATGTGTCAGGGAT 59.799 47.826 0.00 0.00 39.97 3.85
109 110 3.912496 TCCTTGTATGTGTCAGGGATG 57.088 47.619 0.00 0.00 36.41 3.51
110 111 2.092968 TCCTTGTATGTGTCAGGGATGC 60.093 50.000 0.00 0.00 36.41 3.91
127 128 4.410400 CCCGAAGTGGCCCAGGAC 62.410 72.222 0.00 0.00 35.87 3.85
128 129 4.760047 CCGAAGTGGCCCAGGACG 62.760 72.222 0.00 0.00 0.00 4.79
129 130 4.760047 CGAAGTGGCCCAGGACGG 62.760 72.222 0.00 0.00 0.00 4.79
130 131 3.319198 GAAGTGGCCCAGGACGGA 61.319 66.667 0.00 0.00 36.56 4.69
131 132 2.852075 AAGTGGCCCAGGACGGAA 60.852 61.111 0.00 0.00 36.56 4.30
132 133 3.192103 AAGTGGCCCAGGACGGAAC 62.192 63.158 0.00 0.00 36.56 3.62
133 134 3.948719 GTGGCCCAGGACGGAACA 61.949 66.667 0.00 0.00 36.56 3.18
134 135 3.172106 TGGCCCAGGACGGAACAA 61.172 61.111 0.00 0.00 36.56 2.83
135 136 2.114411 GGCCCAGGACGGAACAAA 59.886 61.111 0.00 0.00 36.56 2.83
145 146 2.025898 GACGGAACAAACAAAAGGGGA 58.974 47.619 0.00 0.00 0.00 4.81
147 148 3.035363 ACGGAACAAACAAAAGGGGATT 58.965 40.909 0.00 0.00 0.00 3.01
156 157 2.271800 CAAAAGGGGATTCTCGACTCG 58.728 52.381 0.00 0.00 0.00 4.18
178 179 4.779733 ACCTGGCCGGGAGTCGAT 62.780 66.667 38.16 10.97 42.43 3.59
181 182 1.472662 CCTGGCCGGGAGTCGATATT 61.473 60.000 28.28 0.00 42.43 1.28
193 194 4.021632 GGAGTCGATATTGTAAGTACCCCC 60.022 50.000 0.00 0.00 0.00 5.40
195 196 5.957132 AGTCGATATTGTAAGTACCCCCTA 58.043 41.667 0.00 0.00 0.00 3.53
198 199 6.266330 GTCGATATTGTAAGTACCCCCTAGTT 59.734 42.308 0.00 0.00 0.00 2.24
201 202 5.952347 ATTGTAAGTACCCCCTAGTTCAG 57.048 43.478 0.00 0.00 0.00 3.02
202 203 3.716431 TGTAAGTACCCCCTAGTTCAGG 58.284 50.000 0.00 0.00 45.07 3.86
203 204 3.078000 TGTAAGTACCCCCTAGTTCAGGT 59.922 47.826 0.00 0.00 43.80 4.00
206 207 2.318207 AGTACCCCCTAGTTCAGGTCAT 59.682 50.000 0.00 0.00 43.80 3.06
208 209 1.080498 ACCCCCTAGTTCAGGTCATCA 59.920 52.381 0.00 0.00 43.80 3.07
216 217 6.118170 CCTAGTTCAGGTCATCAACAATCAT 58.882 40.000 0.00 0.00 39.91 2.45
217 218 7.275183 CCTAGTTCAGGTCATCAACAATCATA 58.725 38.462 0.00 0.00 39.91 2.15
227 228 2.223845 TCAACAATCATATCGCGCATGG 59.776 45.455 8.75 7.04 0.00 3.66
233 234 2.407090 TCATATCGCGCATGGAAGAAG 58.593 47.619 8.75 0.00 0.00 2.85
241 242 2.002586 CGCATGGAAGAAGAACGACAT 58.997 47.619 0.00 0.00 0.00 3.06
242 243 2.222886 CGCATGGAAGAAGAACGACATG 60.223 50.000 0.00 0.00 38.86 3.21
243 244 3.002791 GCATGGAAGAAGAACGACATGA 58.997 45.455 0.00 0.00 38.29 3.07
248 249 3.516615 GAAGAAGAACGACATGAGAGGG 58.483 50.000 0.00 0.00 0.00 4.30
249 250 1.205893 AGAAGAACGACATGAGAGGGC 59.794 52.381 0.00 0.00 0.00 5.19
250 251 0.108615 AAGAACGACATGAGAGGGCG 60.109 55.000 0.00 0.00 0.00 6.13
251 252 0.965866 AGAACGACATGAGAGGGCGA 60.966 55.000 0.00 0.00 0.00 5.54
252 253 0.526524 GAACGACATGAGAGGGCGAG 60.527 60.000 0.00 0.00 0.00 5.03
253 254 0.965866 AACGACATGAGAGGGCGAGA 60.966 55.000 0.00 0.00 0.00 4.04
254 255 1.064946 CGACATGAGAGGGCGAGAC 59.935 63.158 0.00 0.00 0.00 3.36
255 256 1.657751 CGACATGAGAGGGCGAGACA 61.658 60.000 0.00 0.00 0.00 3.41
256 257 0.179124 GACATGAGAGGGCGAGACAC 60.179 60.000 0.00 0.00 0.00 3.67
257 258 0.900182 ACATGAGAGGGCGAGACACA 60.900 55.000 0.00 0.00 0.00 3.72
259 260 0.463204 ATGAGAGGGCGAGACACATG 59.537 55.000 0.00 0.00 0.00 3.21
260 261 0.611896 TGAGAGGGCGAGACACATGA 60.612 55.000 0.00 0.00 0.00 3.07
262 263 1.142748 GAGGGCGAGACACATGAGG 59.857 63.158 0.00 0.00 0.00 3.86
263 264 1.608717 GAGGGCGAGACACATGAGGT 61.609 60.000 0.00 0.00 0.00 3.85
276 277 1.808945 CATGAGGTGGAGAAACACAGC 59.191 52.381 0.00 0.00 43.08 4.40
285 286 3.236618 GAAACACAGCGCCACCGAC 62.237 63.158 2.29 0.00 36.29 4.79
304 305 1.092348 CGACGGTGTGACCTAGATGA 58.908 55.000 0.00 0.00 35.66 2.92
306 307 2.541794 CGACGGTGTGACCTAGATGATG 60.542 54.545 0.00 0.00 35.66 3.07
313 314 2.435805 GTGACCTAGATGATGCCCAGAA 59.564 50.000 0.00 0.00 0.00 3.02
318 319 4.202440 ACCTAGATGATGCCCAGAAATGAG 60.202 45.833 0.00 0.00 0.00 2.90
321 322 2.723322 TGATGCCCAGAAATGAGAGG 57.277 50.000 0.00 0.00 0.00 3.69
323 324 2.172082 TGATGCCCAGAAATGAGAGGAG 59.828 50.000 0.00 0.00 0.00 3.69
325 326 1.207791 GCCCAGAAATGAGAGGAGGA 58.792 55.000 0.00 0.00 0.00 3.71
342 343 1.207329 AGGAGGAAAGAAACGGGATCG 59.793 52.381 0.00 0.00 43.02 3.69
344 345 2.158943 GGAGGAAAGAAACGGGATCGAT 60.159 50.000 0.00 0.00 40.11 3.59
350 351 3.099267 AGAAACGGGATCGATCATGAC 57.901 47.619 25.93 12.13 40.11 3.06
356 357 1.285950 GATCGATCATGACGCCGGA 59.714 57.895 20.52 0.00 0.00 5.14
376 377 4.868171 CGGAATGAAAGGATGAAAGTACGA 59.132 41.667 0.00 0.00 0.00 3.43
388 389 6.238538 GGATGAAAGTACGAGGTTTTGAAACA 60.239 38.462 8.68 0.00 40.63 2.83
395 396 4.374399 ACGAGGTTTTGAAACACGATACT 58.626 39.130 21.96 6.51 40.63 2.12
450 451 2.527951 CTACTGGAAGCCTTGGCGCT 62.528 60.000 7.64 0.00 42.22 5.92
452 453 3.907260 CTGGAAGCCTTGGCGCTGA 62.907 63.158 7.64 0.00 39.64 4.26
470 471 2.240162 GAAGAAGCCATCGGGTCGGT 62.240 60.000 0.00 0.00 36.17 4.69
471 472 0.974010 AAGAAGCCATCGGGTCGGTA 60.974 55.000 0.00 0.00 36.17 4.02
527 528 4.143333 CGACGTGGGGGTGGCTAG 62.143 72.222 0.00 0.00 0.00 3.42
547 548 1.547901 GCCTAGGTTGGGCTTGAAGTT 60.548 52.381 11.31 0.00 45.57 2.66
550 551 1.007387 GGTTGGGCTTGAAGTTGCG 60.007 57.895 0.00 0.00 0.00 4.85
551 552 1.452145 GGTTGGGCTTGAAGTTGCGA 61.452 55.000 0.00 0.00 0.00 5.10
555 557 0.109597 GGGCTTGAAGTTGCGATGTG 60.110 55.000 0.00 0.00 0.00 3.21
556 558 0.874390 GGCTTGAAGTTGCGATGTGA 59.126 50.000 0.00 0.00 0.00 3.58
563 565 1.080093 GTTGCGATGTGACTCGGGA 60.080 57.895 0.00 0.00 39.05 5.14
568 570 1.736586 GATGTGACTCGGGATCGCT 59.263 57.895 8.28 0.00 36.13 4.93
576 578 4.271816 CGGGATCGCTGGACGGAG 62.272 72.222 8.28 0.00 43.89 4.63
589 591 2.104331 CGGAGGCTCGCGTGTTAT 59.896 61.111 5.77 0.00 0.00 1.89
590 592 1.518572 CGGAGGCTCGCGTGTTATT 60.519 57.895 5.77 0.00 0.00 1.40
595 597 1.076332 GGCTCGCGTGTTATTGAGTT 58.924 50.000 5.77 0.00 0.00 3.01
599 601 0.515127 CGCGTGTTATTGAGTTGCCA 59.485 50.000 0.00 0.00 0.00 4.92
606 608 1.558167 TATTGAGTTGCCAGCGGGGA 61.558 55.000 4.64 0.00 40.01 4.81
646 648 6.222038 TGGTTCCTCTACTATGATGTGAAC 57.778 41.667 0.00 0.00 0.00 3.18
652 654 7.119387 TCCTCTACTATGATGTGAACTCTGAA 58.881 38.462 0.00 0.00 0.00 3.02
653 655 7.284261 TCCTCTACTATGATGTGAACTCTGAAG 59.716 40.741 0.00 0.00 0.00 3.02
656 658 6.047511 ACTATGATGTGAACTCTGAAGCTT 57.952 37.500 0.00 0.00 0.00 3.74
658 660 7.615403 ACTATGATGTGAACTCTGAAGCTTAA 58.385 34.615 0.00 0.00 0.00 1.85
661 663 7.566760 TGATGTGAACTCTGAAGCTTAAAAA 57.433 32.000 0.00 0.00 0.00 1.94
691 696 5.818136 TGCTAGGCTTTATTGATCAACAC 57.182 39.130 11.07 0.00 0.00 3.32
692 697 4.332543 TGCTAGGCTTTATTGATCAACACG 59.667 41.667 11.07 0.00 0.00 4.49
745 750 2.630580 GGCAGTCCCAACCACAAATAAA 59.369 45.455 0.00 0.00 0.00 1.40
752 757 4.295238 TCCCAACCACAAATAAATCCCCTA 59.705 41.667 0.00 0.00 0.00 3.53
781 786 9.820725 TTAAAGATAAAGCACGCCTAGTTAATA 57.179 29.630 0.00 0.00 0.00 0.98
830 835 7.509141 TTTAGTTTCTTTAGGGGTTAAACCG 57.491 36.000 2.75 0.00 39.83 4.44
832 837 5.311265 AGTTTCTTTAGGGGTTAAACCGAG 58.689 41.667 2.75 0.00 39.83 4.63
833 838 3.339253 TCTTTAGGGGTTAAACCGAGC 57.661 47.619 2.75 0.00 39.83 5.03
834 839 2.908351 TCTTTAGGGGTTAAACCGAGCT 59.092 45.455 2.75 0.00 39.83 4.09
835 840 3.328637 TCTTTAGGGGTTAAACCGAGCTT 59.671 43.478 2.75 0.00 39.83 3.74
837 842 4.906747 TTAGGGGTTAAACCGAGCTTTA 57.093 40.909 2.75 0.00 39.83 1.85
839 844 3.882444 AGGGGTTAAACCGAGCTTTATC 58.118 45.455 2.75 0.00 39.83 1.75
840 845 2.610833 GGGGTTAAACCGAGCTTTATCG 59.389 50.000 2.75 0.00 39.83 2.92
841 846 3.524541 GGGTTAAACCGAGCTTTATCGA 58.475 45.455 0.00 0.00 45.56 3.59
843 848 4.210746 GGGTTAAACCGAGCTTTATCGATC 59.789 45.833 0.00 0.00 45.56 3.69
844 849 4.807304 GGTTAAACCGAGCTTTATCGATCA 59.193 41.667 0.00 0.00 45.56 2.92
845 850 5.292589 GGTTAAACCGAGCTTTATCGATCAA 59.707 40.000 0.00 0.00 45.56 2.57
846 851 6.183360 GGTTAAACCGAGCTTTATCGATCAAA 60.183 38.462 0.00 0.69 45.56 2.69
847 852 5.470845 AAACCGAGCTTTATCGATCAAAG 57.529 39.130 0.00 11.36 45.56 2.77
848 853 4.124851 ACCGAGCTTTATCGATCAAAGT 57.875 40.909 19.43 11.71 45.56 2.66
849 854 4.113354 ACCGAGCTTTATCGATCAAAGTC 58.887 43.478 19.43 15.82 45.56 3.01
850 855 3.491267 CCGAGCTTTATCGATCAAAGTCC 59.509 47.826 19.43 13.81 45.56 3.85
852 857 4.026475 CGAGCTTTATCGATCAAAGTCCAC 60.026 45.833 19.43 9.66 45.56 4.02
936 1316 4.397832 TTCGTAACCCCTGCGCCC 62.398 66.667 4.18 0.00 32.49 6.13
1073 1453 1.886542 GAGGGTAAAGCAAACAGGTGG 59.113 52.381 0.00 0.00 0.00 4.61
1255 1638 4.518211 ACAAGGTCAGATCAGCTTTCTTTG 59.482 41.667 0.00 0.00 31.60 2.77
1294 1677 1.306148 ATCATGTTCTGATGCAGCCG 58.694 50.000 0.00 0.00 43.15 5.52
1367 1750 2.012673 GTCCTCATGTGTGCTGGATTC 58.987 52.381 0.00 0.00 32.93 2.52
1385 1768 8.495148 GCTGGATTCGATTGTTGTTTTAATTTT 58.505 29.630 0.00 0.00 0.00 1.82
1588 1976 3.823304 CCATACGAGTCATGGATGAGAGA 59.177 47.826 3.83 0.00 44.95 3.10
1702 2090 5.420409 AGAGAGGTTATGAAAACCGATGTC 58.580 41.667 1.46 0.00 44.82 3.06
1736 2124 6.015265 TGTGAAGATGCAATTTTTCAGATGGA 60.015 34.615 0.00 0.00 33.04 3.41
1953 2341 4.211164 GGCAGTTGCAATCTTTTACCAAAC 59.789 41.667 0.59 0.00 44.36 2.93
2358 2746 3.243434 GCTGGGAGATTTGATGAAGCATG 60.243 47.826 0.00 0.00 0.00 4.06
2413 2801 3.679389 CAGGCCAGACACAGTTCTTATT 58.321 45.455 5.01 0.00 0.00 1.40
2416 2804 5.122396 CAGGCCAGACACAGTTCTTATTAAC 59.878 44.000 5.01 0.00 0.00 2.01
2483 2871 5.877012 GCTATGAAGTTGTTTGAGGAGATGA 59.123 40.000 0.00 0.00 0.00 2.92
2869 3257 0.698818 AACACTTAGGGAAGGCTGGG 59.301 55.000 0.00 0.00 36.95 4.45
2899 3287 6.408869 TGATGATGCTGTAGATCTGTTTGAA 58.591 36.000 5.18 0.00 0.00 2.69
3178 3566 1.604278 GTTCTTGGTGCCTTGAGTCAC 59.396 52.381 0.00 0.00 0.00 3.67
3456 3846 3.569194 TCCTTTTGTGCCACTCAAGTA 57.431 42.857 0.00 0.00 0.00 2.24
3595 4068 3.535561 TCTGCAGCTGCCTAAATACTTC 58.464 45.455 34.64 4.39 41.18 3.01
3621 4094 6.957920 TGAATGGTTTCAGAATCACTTTCA 57.042 33.333 0.00 0.00 36.94 2.69
3735 4209 1.448365 TGGAGTGCGCATGCTACAG 60.448 57.895 15.91 0.39 43.34 2.74
3748 4222 4.878397 GCATGCTACAGTTCCTGAAGTTAT 59.122 41.667 11.37 0.00 35.18 1.89
3772 4246 0.374063 CGTGTTGCCGTGTTTGTGTA 59.626 50.000 0.00 0.00 0.00 2.90
3778 4252 3.128852 TGCCGTGTTTGTGTAGGTAAT 57.871 42.857 0.00 0.00 0.00 1.89
3872 4346 3.510388 TTTCTCCTCTCTGTATGCGTG 57.490 47.619 0.00 0.00 0.00 5.34
3896 4370 3.749665 TTCCGAACTTCCTTTCCGTTA 57.250 42.857 0.00 0.00 0.00 3.18
3950 4424 6.477360 ACGGCGTGAAAACATTTTCTTATTTT 59.523 30.769 13.76 0.00 45.14 1.82
4001 4475 7.276438 GCATTTTTCACACTTTTCTCTTTCACT 59.724 33.333 0.00 0.00 0.00 3.41
4010 4484 6.986817 CACTTTTCTCTTTCACTGGAACTCTA 59.013 38.462 0.00 0.00 31.35 2.43
4028 4502 6.723298 ACTCTATGGATTCTGACACTAAGG 57.277 41.667 0.00 0.00 0.00 2.69
4049 4523 3.258123 GGAATACTTGCAGGCTTCCAAAA 59.742 43.478 19.78 0.00 36.28 2.44
4124 4598 1.788518 TACCTGTGGGCTGCCATTGT 61.789 55.000 22.05 11.78 35.63 2.71
4160 4634 0.472471 TGAAGCCTTCCGAAACCAGT 59.528 50.000 1.21 0.00 0.00 4.00
4177 4651 1.135402 CAGTAAAGAACCGGCAATGCC 60.135 52.381 15.52 15.52 46.75 4.40
4230 4744 4.184629 GAGATATGTCTTTGGCGTCTGTT 58.815 43.478 0.00 0.00 33.97 3.16
4242 4756 5.752892 TGGCGTCTGTTAAATTTGTGTTA 57.247 34.783 0.00 0.00 0.00 2.41
4258 4772 9.686683 AATTTGTGTTACTATAGAAGCTTCCAT 57.313 29.630 22.81 17.25 0.00 3.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.379331 GGACTCCTTTTATCCTAAGCATCTAAT 58.621 37.037 0.00 0.00 0.00 1.73
4 5 7.569111 AGGACTCCTTTTATCCTAAGCATCTAA 59.431 37.037 0.00 0.00 41.22 2.10
5 6 7.015682 CAGGACTCCTTTTATCCTAAGCATCTA 59.984 40.741 0.00 0.00 41.07 1.98
6 7 5.908247 AGGACTCCTTTTATCCTAAGCATCT 59.092 40.000 0.00 0.00 41.22 2.90
7 8 5.994668 CAGGACTCCTTTTATCCTAAGCATC 59.005 44.000 0.00 0.00 41.07 3.91
8 9 5.667626 TCAGGACTCCTTTTATCCTAAGCAT 59.332 40.000 0.00 0.00 41.07 3.79
9 10 5.030147 TCAGGACTCCTTTTATCCTAAGCA 58.970 41.667 0.00 0.00 41.07 3.91
12 13 6.183361 GCTGATCAGGACTCCTTTTATCCTAA 60.183 42.308 23.89 0.00 41.07 2.69
29 30 5.645067 TCTTTTCACCAACATAGCTGATCAG 59.355 40.000 18.84 18.84 0.00 2.90
32 33 6.006449 ACTTCTTTTCACCAACATAGCTGAT 58.994 36.000 0.00 0.00 0.00 2.90
35 36 4.762251 GGACTTCTTTTCACCAACATAGCT 59.238 41.667 0.00 0.00 0.00 3.32
43 44 4.503714 AGACAAGGACTTCTTTTCACCA 57.496 40.909 0.00 0.00 35.27 4.17
48 49 7.175104 TGGCATATAAGACAAGGACTTCTTTT 58.825 34.615 0.00 0.00 33.96 2.27
50 51 6.313519 TGGCATATAAGACAAGGACTTCTT 57.686 37.500 0.00 0.00 36.10 2.52
66 67 5.179452 AGGTTACACAAGACTTGGCATAT 57.821 39.130 19.16 2.76 34.12 1.78
99 100 1.918293 ACTTCGGGCATCCCTGACA 60.918 57.895 0.00 0.00 46.20 3.58
110 111 4.410400 GTCCTGGGCCACTTCGGG 62.410 72.222 0.00 1.25 34.06 5.14
113 114 2.890766 TTCCGTCCTGGGCCACTTC 61.891 63.158 0.00 0.00 38.76 3.01
114 115 2.852075 TTCCGTCCTGGGCCACTT 60.852 61.111 0.00 0.00 38.76 3.16
115 116 3.637273 GTTCCGTCCTGGGCCACT 61.637 66.667 0.00 0.00 38.76 4.00
116 117 2.969300 TTTGTTCCGTCCTGGGCCAC 62.969 60.000 0.00 0.00 38.76 5.01
117 118 2.758207 TTTGTTCCGTCCTGGGCCA 61.758 57.895 5.85 5.85 38.76 5.36
118 119 2.114411 TTTGTTCCGTCCTGGGCC 59.886 61.111 0.00 0.00 38.76 5.80
119 120 1.104577 TTGTTTGTTCCGTCCTGGGC 61.105 55.000 0.00 0.00 38.76 5.36
120 121 1.394618 TTTGTTTGTTCCGTCCTGGG 58.605 50.000 0.00 0.00 38.76 4.45
121 122 2.223711 CCTTTTGTTTGTTCCGTCCTGG 60.224 50.000 0.00 0.00 40.09 4.45
122 123 2.223711 CCCTTTTGTTTGTTCCGTCCTG 60.224 50.000 0.00 0.00 0.00 3.86
123 124 2.028876 CCCTTTTGTTTGTTCCGTCCT 58.971 47.619 0.00 0.00 0.00 3.85
124 125 1.067974 CCCCTTTTGTTTGTTCCGTCC 59.932 52.381 0.00 0.00 0.00 4.79
125 126 2.025898 TCCCCTTTTGTTTGTTCCGTC 58.974 47.619 0.00 0.00 0.00 4.79
126 127 2.146920 TCCCCTTTTGTTTGTTCCGT 57.853 45.000 0.00 0.00 0.00 4.69
127 128 3.320826 AGAATCCCCTTTTGTTTGTTCCG 59.679 43.478 0.00 0.00 0.00 4.30
128 129 4.558697 CGAGAATCCCCTTTTGTTTGTTCC 60.559 45.833 0.00 0.00 0.00 3.62
129 130 4.277423 TCGAGAATCCCCTTTTGTTTGTTC 59.723 41.667 0.00 0.00 0.00 3.18
130 131 4.037565 GTCGAGAATCCCCTTTTGTTTGTT 59.962 41.667 0.00 0.00 0.00 2.83
131 132 3.568430 GTCGAGAATCCCCTTTTGTTTGT 59.432 43.478 0.00 0.00 0.00 2.83
132 133 3.821033 AGTCGAGAATCCCCTTTTGTTTG 59.179 43.478 0.00 0.00 0.00 2.93
133 134 4.072839 GAGTCGAGAATCCCCTTTTGTTT 58.927 43.478 0.00 0.00 0.00 2.83
134 135 3.676093 GAGTCGAGAATCCCCTTTTGTT 58.324 45.455 0.00 0.00 0.00 2.83
135 136 2.353803 CGAGTCGAGAATCCCCTTTTGT 60.354 50.000 6.73 0.00 0.00 2.83
145 146 2.722201 GGTGGGCCGAGTCGAGAAT 61.722 63.158 15.64 0.00 0.00 2.40
147 148 4.361971 AGGTGGGCCGAGTCGAGA 62.362 66.667 15.64 0.00 40.50 4.04
168 169 4.320788 GGGTACTTACAATATCGACTCCCG 60.321 50.000 0.00 0.00 40.25 5.14
178 179 5.901276 CCTGAACTAGGGGGTACTTACAATA 59.099 44.000 0.00 0.00 43.33 1.90
181 182 3.716431 CCTGAACTAGGGGGTACTTACA 58.284 50.000 0.00 0.00 43.33 2.41
193 194 8.899427 ATATGATTGTTGATGACCTGAACTAG 57.101 34.615 0.00 0.00 0.00 2.57
195 196 6.481313 CGATATGATTGTTGATGACCTGAACT 59.519 38.462 0.00 0.00 0.00 3.01
198 199 4.751600 GCGATATGATTGTTGATGACCTGA 59.248 41.667 0.00 0.00 0.00 3.86
201 202 3.665323 GCGCGATATGATTGTTGATGACC 60.665 47.826 12.10 0.00 0.00 4.02
202 203 3.059665 TGCGCGATATGATTGTTGATGAC 60.060 43.478 12.10 0.00 0.00 3.06
203 204 3.129871 TGCGCGATATGATTGTTGATGA 58.870 40.909 12.10 0.00 0.00 2.92
206 207 2.223845 CCATGCGCGATATGATTGTTGA 59.776 45.455 20.81 0.00 0.00 3.18
208 209 2.493035 TCCATGCGCGATATGATTGTT 58.507 42.857 20.81 0.00 0.00 2.83
216 217 2.201732 GTTCTTCTTCCATGCGCGATA 58.798 47.619 12.10 0.00 0.00 2.92
217 218 1.009829 GTTCTTCTTCCATGCGCGAT 58.990 50.000 12.10 0.00 0.00 4.58
227 228 3.516615 CCCTCTCATGTCGTTCTTCTTC 58.483 50.000 0.00 0.00 0.00 2.87
233 234 0.526524 CTCGCCCTCTCATGTCGTTC 60.527 60.000 0.00 0.00 0.00 3.95
241 242 0.611896 TCATGTGTCTCGCCCTCTCA 60.612 55.000 0.00 0.00 0.00 3.27
242 243 0.102120 CTCATGTGTCTCGCCCTCTC 59.898 60.000 0.00 0.00 0.00 3.20
243 244 1.326213 CCTCATGTGTCTCGCCCTCT 61.326 60.000 0.00 0.00 0.00 3.69
248 249 0.459237 CTCCACCTCATGTGTCTCGC 60.459 60.000 0.00 0.00 43.85 5.03
249 250 1.177401 TCTCCACCTCATGTGTCTCG 58.823 55.000 0.00 0.00 43.85 4.04
250 251 3.244215 TGTTTCTCCACCTCATGTGTCTC 60.244 47.826 0.00 0.00 43.85 3.36
251 252 2.705658 TGTTTCTCCACCTCATGTGTCT 59.294 45.455 0.00 0.00 43.85 3.41
252 253 2.808543 GTGTTTCTCCACCTCATGTGTC 59.191 50.000 0.00 0.00 43.85 3.67
253 254 2.172505 TGTGTTTCTCCACCTCATGTGT 59.827 45.455 0.00 0.00 43.85 3.72
254 255 2.810274 CTGTGTTTCTCCACCTCATGTG 59.190 50.000 0.00 0.00 45.01 3.21
255 256 2.811873 GCTGTGTTTCTCCACCTCATGT 60.812 50.000 0.00 0.00 34.35 3.21
256 257 1.808945 GCTGTGTTTCTCCACCTCATG 59.191 52.381 0.00 0.00 34.35 3.07
257 258 1.609061 CGCTGTGTTTCTCCACCTCAT 60.609 52.381 0.00 0.00 34.35 2.90
259 260 1.569479 GCGCTGTGTTTCTCCACCTC 61.569 60.000 0.00 0.00 34.35 3.85
260 261 1.598130 GCGCTGTGTTTCTCCACCT 60.598 57.895 0.00 0.00 34.35 4.00
262 263 1.891919 TGGCGCTGTGTTTCTCCAC 60.892 57.895 7.64 0.00 35.86 4.02
263 264 1.891919 GTGGCGCTGTGTTTCTCCA 60.892 57.895 7.64 0.00 0.00 3.86
264 265 2.617274 GGTGGCGCTGTGTTTCTCC 61.617 63.158 7.64 0.00 0.00 3.71
285 286 1.092348 TCATCTAGGTCACACCGTCG 58.908 55.000 0.00 0.00 44.90 5.12
298 299 4.041321 CCTCTCATTTCTGGGCATCATCTA 59.959 45.833 0.00 0.00 0.00 1.98
304 305 1.493871 CCTCCTCTCATTTCTGGGCAT 59.506 52.381 0.00 0.00 0.00 4.40
306 307 1.140652 CTCCTCCTCTCATTTCTGGGC 59.859 57.143 0.00 0.00 0.00 5.36
313 314 4.323104 CGTTTCTTTCCTCCTCCTCTCATT 60.323 45.833 0.00 0.00 0.00 2.57
318 319 1.066071 CCCGTTTCTTTCCTCCTCCTC 60.066 57.143 0.00 0.00 0.00 3.71
321 322 2.738964 CGATCCCGTTTCTTTCCTCCTC 60.739 54.545 0.00 0.00 0.00 3.71
323 324 1.206371 TCGATCCCGTTTCTTTCCTCC 59.794 52.381 0.00 0.00 37.05 4.30
325 326 2.500098 TGATCGATCCCGTTTCTTTCCT 59.500 45.455 22.31 0.00 37.05 3.36
342 343 1.581934 TTCATTCCGGCGTCATGATC 58.418 50.000 16.22 0.00 0.00 2.92
344 345 1.368641 CTTTCATTCCGGCGTCATGA 58.631 50.000 12.68 12.68 0.00 3.07
350 351 1.378531 TTCATCCTTTCATTCCGGCG 58.621 50.000 0.00 0.00 0.00 6.46
356 357 5.805728 ACCTCGTACTTTCATCCTTTCATT 58.194 37.500 0.00 0.00 0.00 2.57
376 377 4.277423 CCCAAGTATCGTGTTTCAAAACCT 59.723 41.667 3.33 0.00 38.11 3.50
388 389 2.544844 TCCTTCTCCCCAAGTATCGT 57.455 50.000 0.00 0.00 0.00 3.73
395 396 1.009997 ATTGCCATCCTTCTCCCCAA 58.990 50.000 0.00 0.00 0.00 4.12
421 422 0.456312 CTTCCAGTAGCACGTCGACC 60.456 60.000 10.58 0.00 0.00 4.79
450 451 1.218047 CGACCCGATGGCTTCTTCA 59.782 57.895 0.00 0.00 33.59 3.02
452 453 0.974010 TACCGACCCGATGGCTTCTT 60.974 55.000 0.00 0.00 33.59 2.52
462 463 4.157120 CCCTTGCCTACCGACCCG 62.157 72.222 0.00 0.00 0.00 5.28
463 464 2.686106 TCCCTTGCCTACCGACCC 60.686 66.667 0.00 0.00 0.00 4.46
470 471 3.458163 CGCTCCGTCCCTTGCCTA 61.458 66.667 0.00 0.00 0.00 3.93
547 548 1.437573 GATCCCGAGTCACATCGCA 59.562 57.895 0.00 0.00 41.37 5.10
550 551 0.596083 CAGCGATCCCGAGTCACATC 60.596 60.000 0.00 0.00 38.22 3.06
551 552 1.439228 CAGCGATCCCGAGTCACAT 59.561 57.895 0.00 0.00 38.22 3.21
555 557 2.413765 GTCCAGCGATCCCGAGTC 59.586 66.667 0.00 0.00 38.22 3.36
556 558 3.518998 CGTCCAGCGATCCCGAGT 61.519 66.667 0.00 0.00 44.77 4.18
563 565 3.532155 GAGCCTCCGTCCAGCGAT 61.532 66.667 0.00 0.00 44.77 4.58
576 578 1.076332 AACTCAATAACACGCGAGCC 58.924 50.000 15.93 0.00 0.00 4.70
589 591 3.565214 TCCCCGCTGGCAACTCAA 61.565 61.111 0.00 0.00 37.61 3.02
590 592 4.329545 GTCCCCGCTGGCAACTCA 62.330 66.667 0.00 0.00 37.61 3.41
626 628 7.119387 TCAGAGTTCACATCATAGTAGAGGAA 58.881 38.462 0.00 0.00 0.00 3.36
630 632 6.605194 AGCTTCAGAGTTCACATCATAGTAGA 59.395 38.462 0.00 0.00 0.00 2.59
663 665 9.971922 GTTGATCAATAAAGCCTAGCAATAATT 57.028 29.630 12.12 0.00 0.00 1.40
664 666 9.135189 TGTTGATCAATAAAGCCTAGCAATAAT 57.865 29.630 12.12 0.00 0.00 1.28
667 669 6.458751 CGTGTTGATCAATAAAGCCTAGCAAT 60.459 38.462 12.12 0.00 0.00 3.56
691 696 7.865889 TCCACTTGTTATAGCTGTAATCATACG 59.134 37.037 6.18 2.59 34.60 3.06
692 697 9.712305 ATCCACTTGTTATAGCTGTAATCATAC 57.288 33.333 6.18 0.00 0.00 2.39
745 750 7.255486 GCGTGCTTTATCTTTAAATTAGGGGAT 60.255 37.037 0.00 0.00 0.00 3.85
752 757 7.625828 ACTAGGCGTGCTTTATCTTTAAATT 57.374 32.000 0.00 0.00 0.00 1.82
805 810 7.777440 TCGGTTTAACCCCTAAAGAAACTAAAA 59.223 33.333 8.72 0.00 33.75 1.52
807 812 6.836242 TCGGTTTAACCCCTAAAGAAACTAA 58.164 36.000 8.72 0.00 33.75 2.24
809 814 5.308976 TCGGTTTAACCCCTAAAGAAACT 57.691 39.130 8.72 0.00 33.75 2.66
810 815 4.083110 GCTCGGTTTAACCCCTAAAGAAAC 60.083 45.833 8.72 0.00 33.75 2.78
811 816 4.074259 GCTCGGTTTAACCCCTAAAGAAA 58.926 43.478 8.72 0.00 33.75 2.52
813 818 2.908351 AGCTCGGTTTAACCCCTAAAGA 59.092 45.455 8.72 0.00 33.75 2.52
814 819 3.345508 AGCTCGGTTTAACCCCTAAAG 57.654 47.619 8.72 0.40 33.75 1.85
815 820 3.793819 AAGCTCGGTTTAACCCCTAAA 57.206 42.857 8.72 0.00 33.75 1.85
817 822 4.441913 CGATAAAGCTCGGTTTAACCCCTA 60.442 45.833 8.72 0.00 33.75 3.53
818 823 3.680754 CGATAAAGCTCGGTTTAACCCCT 60.681 47.826 8.72 0.00 33.75 4.79
819 824 2.610833 CGATAAAGCTCGGTTTAACCCC 59.389 50.000 8.72 0.00 33.75 4.95
820 825 3.524541 TCGATAAAGCTCGGTTTAACCC 58.475 45.455 8.72 0.00 39.13 4.11
821 826 4.807304 TGATCGATAAAGCTCGGTTTAACC 59.193 41.667 3.64 3.64 39.13 2.85
823 828 6.592607 ACTTTGATCGATAAAGCTCGGTTTAA 59.407 34.615 18.91 0.00 38.41 1.52
824 829 6.103997 ACTTTGATCGATAAAGCTCGGTTTA 58.896 36.000 18.91 4.07 38.41 2.01
825 830 4.935808 ACTTTGATCGATAAAGCTCGGTTT 59.064 37.500 18.91 0.00 38.41 3.27
826 831 4.504858 ACTTTGATCGATAAAGCTCGGTT 58.495 39.130 18.91 4.77 38.41 4.44
827 832 4.113354 GACTTTGATCGATAAAGCTCGGT 58.887 43.478 18.91 6.91 38.41 4.69
828 833 3.491267 GGACTTTGATCGATAAAGCTCGG 59.509 47.826 18.91 4.62 38.41 4.63
829 834 4.026475 GTGGACTTTGATCGATAAAGCTCG 60.026 45.833 18.91 0.00 38.41 5.03
830 835 4.026475 CGTGGACTTTGATCGATAAAGCTC 60.026 45.833 18.91 15.93 38.41 4.09
832 837 3.863424 TCGTGGACTTTGATCGATAAAGC 59.137 43.478 18.91 14.13 38.41 3.51
833 838 5.557136 GCATCGTGGACTTTGATCGATAAAG 60.557 44.000 18.05 18.05 38.82 1.85
834 839 4.270084 GCATCGTGGACTTTGATCGATAAA 59.730 41.667 0.00 0.00 38.82 1.40
835 840 3.802139 GCATCGTGGACTTTGATCGATAA 59.198 43.478 0.00 0.00 38.82 1.75
837 842 2.205074 GCATCGTGGACTTTGATCGAT 58.795 47.619 0.00 0.00 40.95 3.59
839 844 0.652592 GGCATCGTGGACTTTGATCG 59.347 55.000 0.00 0.00 0.00 3.69
840 845 1.017387 GGGCATCGTGGACTTTGATC 58.983 55.000 0.00 0.00 0.00 2.92
841 846 0.744414 CGGGCATCGTGGACTTTGAT 60.744 55.000 0.00 0.00 0.00 2.57
843 848 2.398554 CCGGGCATCGTGGACTTTG 61.399 63.158 0.00 0.00 37.11 2.77
844 849 2.046314 CCGGGCATCGTGGACTTT 60.046 61.111 0.00 0.00 37.11 2.66
845 850 4.096003 CCCGGGCATCGTGGACTT 62.096 66.667 8.08 0.00 37.11 3.01
847 852 4.404098 AACCCGGGCATCGTGGAC 62.404 66.667 24.08 0.00 37.11 4.02
848 853 4.402528 CAACCCGGGCATCGTGGA 62.403 66.667 24.08 0.00 37.11 4.02
936 1316 0.916358 AAGAGGAGTGGGTGGGGATG 60.916 60.000 0.00 0.00 0.00 3.51
1255 1638 7.118390 ACATGATTTCACTCAAGTTAGCAGTAC 59.882 37.037 0.00 0.00 0.00 2.73
1385 1768 5.720202 ACACAGATCGTATGCTCAAAAGTA 58.280 37.500 0.00 0.00 0.00 2.24
1387 1770 5.319139 CAACACAGATCGTATGCTCAAAAG 58.681 41.667 0.00 0.00 0.00 2.27
1472 1858 0.829333 ATCTCATTCTCTGCGCCAGT 59.171 50.000 4.18 0.00 32.61 4.00
1702 2090 1.021390 GCATCTTCACACTGACCCCG 61.021 60.000 0.00 0.00 0.00 5.73
1736 2124 3.260884 TCGTAATTCCTCTTCCTTGCTGT 59.739 43.478 0.00 0.00 0.00 4.40
1953 2341 1.021202 TTGACACTTTCGTGCCTTGG 58.979 50.000 0.00 0.00 45.10 3.61
2320 2708 1.614317 CCAGCTTTACCAAGTCCCCTG 60.614 57.143 0.00 0.00 31.86 4.45
2358 2746 6.252869 TCGTCGCATTTCATAGAAGAAGTTAC 59.747 38.462 0.00 0.00 0.00 2.50
2416 2804 9.696917 GCCTTACCCAAGAAATTTATCATATTG 57.303 33.333 0.00 0.00 33.20 1.90
2437 2825 1.626321 TCATCCAAACGACCAGCCTTA 59.374 47.619 0.00 0.00 0.00 2.69
2483 2871 6.127140 ACGCTAGGAATACACCTTAATGTCTT 60.127 38.462 0.00 0.00 41.00 3.01
2530 2918 9.825972 CGAGATTTAGATTCAAAAAGTGCTTTA 57.174 29.630 0.00 0.00 31.63 1.85
2869 3257 0.585357 CTACAGCATCATCAAGCCGC 59.415 55.000 0.00 0.00 0.00 6.53
2899 3287 3.181451 TGCAACCAAGTCTGTTCATCTCT 60.181 43.478 0.00 0.00 0.00 3.10
3178 3566 1.651240 CCTCCTCAAACATGCCTGCG 61.651 60.000 0.00 0.00 0.00 5.18
3456 3846 8.472007 TCCATGATTTTACCAAGTAACAGTTT 57.528 30.769 0.00 0.00 0.00 2.66
3570 4043 5.059833 AGTATTTAGGCAGCTGCAGATTAC 58.940 41.667 37.63 27.71 44.36 1.89
3620 4093 1.808945 GCCCTCGCATCTTAATGGATG 59.191 52.381 1.29 1.29 44.08 3.51
3621 4094 1.701847 AGCCCTCGCATCTTAATGGAT 59.298 47.619 0.00 0.00 37.52 3.41
3735 4209 4.563061 ACACGTACCATAACTTCAGGAAC 58.437 43.478 0.00 0.00 0.00 3.62
3748 4222 0.743701 AAACACGGCAACACGTACCA 60.744 50.000 0.00 0.00 46.75 3.25
3772 4246 7.404671 ACGCCTGAAAATATTTGAATTACCT 57.595 32.000 0.39 0.00 0.00 3.08
3872 4346 1.540267 GGAAAGGAAGTTCGGAAAGCC 59.460 52.381 0.00 0.00 0.00 4.35
3921 4395 5.864986 AGAAAATGTTTTCACGCCGTATAG 58.135 37.500 17.60 0.00 46.81 1.31
3950 4424 0.831966 AACTACAACACACACGGGGA 59.168 50.000 0.00 0.00 0.00 4.81
4001 4475 5.026121 AGTGTCAGAATCCATAGAGTTCCA 58.974 41.667 0.00 0.00 0.00 3.53
4010 4484 7.682787 AGTATTCCTTAGTGTCAGAATCCAT 57.317 36.000 0.00 0.00 31.63 3.41
4028 4502 4.519540 TTTTGGAAGCCTGCAAGTATTC 57.480 40.909 0.00 0.00 34.03 1.75
4067 4541 2.029838 AGCTGGAAAGATTAGGCACG 57.970 50.000 0.00 0.00 0.00 5.34
4124 4598 5.068987 AGGCTTCAAACACTTAGCAATGAAA 59.931 36.000 0.00 0.00 35.36 2.69
4242 4756 2.700897 ACGCCATGGAAGCTTCTATAGT 59.299 45.455 23.14 19.22 0.00 2.12
4254 4768 3.192422 CCATTTCTTACAAACGCCATGGA 59.808 43.478 18.40 0.00 33.08 3.41
4255 4769 3.056891 ACCATTTCTTACAAACGCCATGG 60.057 43.478 7.63 7.63 36.73 3.66
4256 4770 3.919804 CACCATTTCTTACAAACGCCATG 59.080 43.478 0.00 0.00 0.00 3.66
4258 4772 2.952978 ACACCATTTCTTACAAACGCCA 59.047 40.909 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.