Multiple sequence alignment - TraesCS5A01G241000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G241000 chr5A 100.000 2753 0 0 1 2753 457002750 457005502 0.000000e+00 5084.0
1 TraesCS5A01G241000 chr5A 85.154 1172 98 34 664 1786 454817457 454816313 0.000000e+00 1131.0
2 TraesCS5A01G241000 chr5A 79.127 733 89 36 997 1705 456974799 456975491 5.410000e-122 448.0
3 TraesCS5A01G241000 chr5A 82.000 350 33 13 242 571 454820661 454820322 1.260000e-68 270.0
4 TraesCS5A01G241000 chr5A 84.184 196 28 1 2557 2749 509774424 509774229 1.300000e-43 187.0
5 TraesCS5A01G241000 chr5A 94.737 38 2 0 2415 2452 454814970 454814933 2.960000e-05 60.2
6 TraesCS5A01G241000 chr5D 91.702 1892 98 20 635 2503 354890799 354892654 0.000000e+00 2569.0
7 TraesCS5A01G241000 chr5D 84.465 1178 116 32 656 1784 354031824 354030665 0.000000e+00 1099.0
8 TraesCS5A01G241000 chr5D 88.189 381 18 14 196 571 354890069 354890427 1.960000e-116 429.0
9 TraesCS5A01G241000 chr5D 79.669 605 69 37 1101 1686 354836973 354837542 1.200000e-103 387.0
10 TraesCS5A01G241000 chr5D 91.509 106 8 1 81 185 491692855 491692750 7.950000e-31 145.0
11 TraesCS5A01G241000 chr5D 85.185 81 6 1 3 83 354889984 354890058 8.170000e-11 78.7
12 TraesCS5A01G241000 chr5B 89.841 1319 88 16 585 1879 419643922 419645218 0.000000e+00 1652.0
13 TraesCS5A01G241000 chr5B 83.775 1171 118 31 657 1784 418374970 418373829 0.000000e+00 1044.0
14 TraesCS5A01G241000 chr5B 88.564 376 23 10 196 566 419643452 419643812 3.250000e-119 438.0
15 TraesCS5A01G241000 chr5B 92.739 303 22 0 2176 2478 419645452 419645754 3.250000e-119 438.0
16 TraesCS5A01G241000 chr5B 79.343 426 52 24 1274 1686 419620290 419620692 1.630000e-67 267.0
17 TraesCS5A01G241000 chr5B 82.069 290 14 9 311 571 418377548 418377268 2.150000e-51 213.0
18 TraesCS5A01G241000 chr5B 84.906 159 12 6 2152 2298 418371762 418371604 1.710000e-32 150.0
19 TraesCS5A01G241000 chr4D 90.547 201 15 2 2557 2753 43377284 43377084 2.100000e-66 263.0
20 TraesCS5A01G241000 chr7B 90.500 200 15 2 2558 2753 720814944 720815143 7.560000e-66 261.0
21 TraesCS5A01G241000 chr7B 89.908 109 9 2 78 185 559142192 559142299 3.700000e-29 139.0
22 TraesCS5A01G241000 chr4B 90.050 201 16 2 2557 2753 34439809 34439609 9.780000e-65 257.0
23 TraesCS5A01G241000 chr4B 88.793 116 10 3 79 191 172646436 172646551 3.700000e-29 139.0
24 TraesCS5A01G241000 chr2D 90.050 201 16 2 2557 2753 44478968 44479168 9.780000e-65 257.0
25 TraesCS5A01G241000 chr7D 89.055 201 18 2 2557 2753 590150603 590150803 2.120000e-61 246.0
26 TraesCS5A01G241000 chr7D 88.268 179 19 2 2576 2753 562030807 562030630 2.150000e-51 213.0
27 TraesCS5A01G241000 chr7D 86.111 180 24 1 2575 2753 626892685 626892506 2.800000e-45 193.0
28 TraesCS5A01G241000 chrUn 88.265 196 18 3 2553 2744 251020 251214 2.130000e-56 230.0
29 TraesCS5A01G241000 chr7A 91.589 107 8 1 81 186 606406170 606406064 2.210000e-31 147.0
30 TraesCS5A01G241000 chr6A 90.826 109 9 1 81 188 190662941 190662833 7.950000e-31 145.0
31 TraesCS5A01G241000 chr6A 90.826 109 9 1 81 188 190690179 190690071 7.950000e-31 145.0
32 TraesCS5A01G241000 chr6A 90.826 109 9 1 81 188 190741276 190741168 7.950000e-31 145.0
33 TraesCS5A01G241000 chr1A 90.741 108 9 1 79 185 521901450 521901343 2.860000e-30 143.0
34 TraesCS5A01G241000 chr1D 88.696 115 11 2 72 185 447959580 447959467 3.700000e-29 139.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G241000 chr5A 457002750 457005502 2752 False 5084.000000 5084 100.000000 1 2753 1 chr5A.!!$F2 2752
1 TraesCS5A01G241000 chr5A 454814933 454820661 5728 True 487.066667 1131 87.297000 242 2452 3 chr5A.!!$R2 2210
2 TraesCS5A01G241000 chr5A 456974799 456975491 692 False 448.000000 448 79.127000 997 1705 1 chr5A.!!$F1 708
3 TraesCS5A01G241000 chr5D 354030665 354031824 1159 True 1099.000000 1099 84.465000 656 1784 1 chr5D.!!$R1 1128
4 TraesCS5A01G241000 chr5D 354889984 354892654 2670 False 1025.566667 2569 88.358667 3 2503 3 chr5D.!!$F2 2500
5 TraesCS5A01G241000 chr5D 354836973 354837542 569 False 387.000000 387 79.669000 1101 1686 1 chr5D.!!$F1 585
6 TraesCS5A01G241000 chr5B 419643452 419645754 2302 False 842.666667 1652 90.381333 196 2478 3 chr5B.!!$F2 2282
7 TraesCS5A01G241000 chr5B 418371604 418377548 5944 True 469.000000 1044 83.583333 311 2298 3 chr5B.!!$R1 1987

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
476 502 0.099968 ACTCACATACATACGCGCGT 59.9 50.0 39.05 39.05 0.0 6.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2339 7217 0.808453 ACACCGTATCGATTTGCCCG 60.808 55.0 1.71 0.0 0.0 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.536943 AACAGGAGACGGAGGCAGAC 61.537 60.000 0.00 0.00 0.00 3.51
29 30 4.500116 GGAGACGGAGGCAGACGC 62.500 72.222 0.00 0.00 37.44 5.19
30 31 3.749064 GAGACGGAGGCAGACGCA 61.749 66.667 0.00 0.00 41.24 5.24
38 39 2.358003 GGCAGACGCAGAGCTTGT 60.358 61.111 0.00 0.00 41.24 3.16
44 45 2.667536 CGCAGAGCTTGTGTGGCT 60.668 61.111 0.00 0.00 43.26 4.75
48 49 3.782244 GAGCTTGTGTGGCTCGCG 61.782 66.667 0.00 0.00 45.01 5.87
79 80 2.478370 CCAGGAACATGCGCATACAAAG 60.478 50.000 24.84 13.03 0.00 2.77
83 84 3.354397 GAACATGCGCATACAAAGCTAC 58.646 45.455 24.84 3.69 0.00 3.58
84 85 2.632377 ACATGCGCATACAAAGCTACT 58.368 42.857 24.84 0.00 0.00 2.57
85 86 3.009723 ACATGCGCATACAAAGCTACTT 58.990 40.909 24.84 0.00 0.00 2.24
87 88 2.006888 TGCGCATACAAAGCTACTTCC 58.993 47.619 5.66 0.00 0.00 3.46
89 90 2.285488 GCGCATACAAAGCTACTTCCTC 59.715 50.000 0.30 0.00 0.00 3.71
92 93 3.679083 GCATACAAAGCTACTTCCTCCGT 60.679 47.826 0.00 0.00 0.00 4.69
93 94 4.504858 CATACAAAGCTACTTCCTCCGTT 58.495 43.478 0.00 0.00 0.00 4.44
94 95 3.041508 ACAAAGCTACTTCCTCCGTTC 57.958 47.619 0.00 0.00 0.00 3.95
95 96 2.289506 ACAAAGCTACTTCCTCCGTTCC 60.290 50.000 0.00 0.00 0.00 3.62
96 97 1.640917 AAGCTACTTCCTCCGTTCCA 58.359 50.000 0.00 0.00 0.00 3.53
97 98 1.640917 AGCTACTTCCTCCGTTCCAA 58.359 50.000 0.00 0.00 0.00 3.53
98 99 1.975680 AGCTACTTCCTCCGTTCCAAA 59.024 47.619 0.00 0.00 0.00 3.28
99 100 2.572104 AGCTACTTCCTCCGTTCCAAAT 59.428 45.455 0.00 0.00 0.00 2.32
100 101 3.009143 AGCTACTTCCTCCGTTCCAAATT 59.991 43.478 0.00 0.00 0.00 1.82
101 102 4.224370 AGCTACTTCCTCCGTTCCAAATTA 59.776 41.667 0.00 0.00 0.00 1.40
102 103 4.331992 GCTACTTCCTCCGTTCCAAATTAC 59.668 45.833 0.00 0.00 0.00 1.89
103 104 4.635699 ACTTCCTCCGTTCCAAATTACT 57.364 40.909 0.00 0.00 0.00 2.24
104 105 4.576879 ACTTCCTCCGTTCCAAATTACTC 58.423 43.478 0.00 0.00 0.00 2.59
105 106 3.241067 TCCTCCGTTCCAAATTACTCG 57.759 47.619 0.00 0.00 0.00 4.18
106 107 2.564062 TCCTCCGTTCCAAATTACTCGT 59.436 45.455 0.00 0.00 0.00 4.18
107 108 3.007182 TCCTCCGTTCCAAATTACTCGTT 59.993 43.478 0.00 0.00 0.00 3.85
108 109 3.124636 CCTCCGTTCCAAATTACTCGTTG 59.875 47.826 0.00 0.00 0.00 4.10
109 110 2.481185 TCCGTTCCAAATTACTCGTTGC 59.519 45.455 0.00 0.00 0.00 4.17
110 111 2.224549 CCGTTCCAAATTACTCGTTGCA 59.775 45.455 0.00 0.00 0.00 4.08
111 112 3.479006 CGTTCCAAATTACTCGTTGCAG 58.521 45.455 0.00 0.00 0.00 4.41
112 113 3.185594 CGTTCCAAATTACTCGTTGCAGA 59.814 43.478 0.00 0.00 0.00 4.26
113 114 4.319190 CGTTCCAAATTACTCGTTGCAGAA 60.319 41.667 0.00 0.00 0.00 3.02
114 115 5.516090 GTTCCAAATTACTCGTTGCAGAAA 58.484 37.500 0.00 0.00 0.00 2.52
115 116 5.957842 TCCAAATTACTCGTTGCAGAAAT 57.042 34.783 0.00 0.00 0.00 2.17
116 117 5.698832 TCCAAATTACTCGTTGCAGAAATG 58.301 37.500 0.00 0.00 0.00 2.32
117 118 5.471797 TCCAAATTACTCGTTGCAGAAATGA 59.528 36.000 0.00 0.00 32.73 2.57
118 119 6.016693 TCCAAATTACTCGTTGCAGAAATGAA 60.017 34.615 0.00 0.00 33.34 2.57
119 120 6.808212 CCAAATTACTCGTTGCAGAAATGAAT 59.192 34.615 0.00 0.00 33.34 2.57
120 121 7.967854 CCAAATTACTCGTTGCAGAAATGAATA 59.032 33.333 0.00 0.00 33.34 1.75
121 122 9.507280 CAAATTACTCGTTGCAGAAATGAATAT 57.493 29.630 0.00 0.00 33.34 1.28
163 164 8.894731 ACATCTAGATACATCCATACATACGAC 58.105 37.037 4.54 0.00 0.00 4.34
164 165 8.893727 CATCTAGATACATCCATACATACGACA 58.106 37.037 4.54 0.00 0.00 4.35
165 166 8.857694 TCTAGATACATCCATACATACGACAA 57.142 34.615 0.00 0.00 0.00 3.18
166 167 8.947115 TCTAGATACATCCATACATACGACAAG 58.053 37.037 0.00 0.00 0.00 3.16
167 168 7.526142 AGATACATCCATACATACGACAAGT 57.474 36.000 0.00 0.00 0.00 3.16
168 169 8.631480 AGATACATCCATACATACGACAAGTA 57.369 34.615 0.00 0.00 40.03 2.24
169 170 9.074576 AGATACATCCATACATACGACAAGTAA 57.925 33.333 0.00 0.00 39.04 2.24
170 171 9.856488 GATACATCCATACATACGACAAGTAAT 57.144 33.333 0.00 0.00 39.04 1.89
172 173 8.958119 ACATCCATACATACGACAAGTAATTT 57.042 30.769 0.00 0.00 39.04 1.82
173 174 8.826710 ACATCCATACATACGACAAGTAATTTG 58.173 33.333 0.00 0.00 42.68 2.32
174 175 7.780008 TCCATACATACGACAAGTAATTTGG 57.220 36.000 0.00 0.00 41.25 3.28
175 176 7.557724 TCCATACATACGACAAGTAATTTGGA 58.442 34.615 0.00 0.00 41.25 3.53
176 177 8.041919 TCCATACATACGACAAGTAATTTGGAA 58.958 33.333 0.00 0.00 41.25 3.53
177 178 8.836413 CCATACATACGACAAGTAATTTGGAAT 58.164 33.333 0.00 0.00 41.25 3.01
178 179 9.650371 CATACATACGACAAGTAATTTGGAATG 57.350 33.333 0.00 0.00 41.25 2.67
179 180 7.083875 ACATACGACAAGTAATTTGGAATGG 57.916 36.000 0.00 0.00 41.25 3.16
180 181 6.094881 ACATACGACAAGTAATTTGGAATGGG 59.905 38.462 0.00 0.00 41.25 4.00
181 182 3.761752 ACGACAAGTAATTTGGAATGGGG 59.238 43.478 0.00 0.00 41.25 4.96
182 183 3.130340 CGACAAGTAATTTGGAATGGGGG 59.870 47.826 0.00 0.00 41.25 5.40
183 184 4.349365 GACAAGTAATTTGGAATGGGGGA 58.651 43.478 0.00 0.00 41.25 4.81
184 185 4.352893 ACAAGTAATTTGGAATGGGGGAG 58.647 43.478 0.00 0.00 41.25 4.30
185 186 4.045334 ACAAGTAATTTGGAATGGGGGAGA 59.955 41.667 0.00 0.00 41.25 3.71
186 187 4.965283 AGTAATTTGGAATGGGGGAGAA 57.035 40.909 0.00 0.00 0.00 2.87
187 188 5.487861 AGTAATTTGGAATGGGGGAGAAT 57.512 39.130 0.00 0.00 0.00 2.40
188 189 6.606241 AGTAATTTGGAATGGGGGAGAATA 57.394 37.500 0.00 0.00 0.00 1.75
189 190 6.614657 AGTAATTTGGAATGGGGGAGAATAG 58.385 40.000 0.00 0.00 0.00 1.73
190 191 3.312736 TTTGGAATGGGGGAGAATAGC 57.687 47.619 0.00 0.00 0.00 2.97
191 192 1.905839 TGGAATGGGGGAGAATAGCA 58.094 50.000 0.00 0.00 0.00 3.49
192 193 1.494721 TGGAATGGGGGAGAATAGCAC 59.505 52.381 0.00 0.00 0.00 4.40
193 194 1.494721 GGAATGGGGGAGAATAGCACA 59.505 52.381 0.00 0.00 0.00 4.57
194 195 2.108952 GGAATGGGGGAGAATAGCACAT 59.891 50.000 0.00 0.00 0.00 3.21
199 200 2.224793 GGGGGAGAATAGCACATAACCC 60.225 54.545 0.00 0.00 35.80 4.11
202 203 3.136626 GGGAGAATAGCACATAACCCTGT 59.863 47.826 0.00 0.00 33.99 4.00
211 212 4.832266 AGCACATAACCCTGTCATTTTCAA 59.168 37.500 0.00 0.00 0.00 2.69
217 218 5.930837 AACCCTGTCATTTTCAAACTCAA 57.069 34.783 0.00 0.00 0.00 3.02
220 221 5.156355 CCCTGTCATTTTCAAACTCAATCG 58.844 41.667 0.00 0.00 0.00 3.34
267 268 2.626780 GCTTCCGTGTTCTTGGGCC 61.627 63.158 0.00 0.00 0.00 5.80
475 501 2.026915 TACTCACATACATACGCGCG 57.973 50.000 30.96 30.96 0.00 6.86
476 502 0.099968 ACTCACATACATACGCGCGT 59.900 50.000 39.05 39.05 0.00 6.01
477 503 0.498511 CTCACATACATACGCGCGTG 59.501 55.000 42.78 30.01 0.00 5.34
478 504 0.179158 TCACATACATACGCGCGTGT 60.179 50.000 42.78 35.29 0.00 4.49
480 506 1.143373 ACATACATACGCGCGTGTGG 61.143 55.000 46.15 35.37 40.75 4.17
481 507 1.140161 ATACATACGCGCGTGTGGT 59.860 52.632 46.15 37.41 40.75 4.16
483 509 2.197643 TACATACGCGCGTGTGGTCA 62.198 55.000 46.15 33.55 40.75 4.02
624 784 8.071967 TCATTATCGTACACGGATACACTAAAG 58.928 37.037 1.39 0.00 40.29 1.85
673 3576 4.402056 TTTAAAAACCCGGTCAATTGCA 57.598 36.364 0.00 0.00 0.00 4.08
691 3594 1.983972 CAAGTACACTGTCGAGCTCC 58.016 55.000 8.47 0.00 0.00 4.70
693 3596 1.169577 AGTACACTGTCGAGCTCCAG 58.830 55.000 15.91 15.91 34.82 3.86
725 3632 2.222227 AGCCTTGAACCCAAAGGATC 57.778 50.000 6.39 0.00 35.52 3.36
726 3633 1.186200 GCCTTGAACCCAAAGGATCC 58.814 55.000 2.48 2.48 34.04 3.36
734 3641 3.629142 ACCCAAAGGATCCTAAACTCG 57.371 47.619 16.55 3.36 36.73 4.18
745 3656 1.001597 CCTAAACTCGCTAGCTACGGG 60.002 57.143 13.93 12.23 36.95 5.28
882 3809 0.248907 TTATACGCACAGCTCGCTCC 60.249 55.000 3.31 0.00 0.00 4.70
883 3810 1.381165 TATACGCACAGCTCGCTCCA 61.381 55.000 3.31 0.00 0.00 3.86
889 3816 1.683707 ACAGCTCGCTCCATCCTCA 60.684 57.895 0.00 0.00 0.00 3.86
905 3847 1.274447 CCTCAGCAGAGATCACACACA 59.726 52.381 7.84 0.00 44.98 3.72
906 3848 2.093606 CCTCAGCAGAGATCACACACAT 60.094 50.000 7.84 0.00 44.98 3.21
907 3849 3.131755 CCTCAGCAGAGATCACACACATA 59.868 47.826 7.84 0.00 44.98 2.29
908 3850 4.111198 CTCAGCAGAGATCACACACATAC 58.889 47.826 0.00 0.00 44.98 2.39
909 3851 3.511146 TCAGCAGAGATCACACACATACA 59.489 43.478 0.00 0.00 0.00 2.29
910 3852 4.161001 TCAGCAGAGATCACACACATACAT 59.839 41.667 0.00 0.00 0.00 2.29
911 3853 5.360714 TCAGCAGAGATCACACACATACATA 59.639 40.000 0.00 0.00 0.00 2.29
912 3854 5.461407 CAGCAGAGATCACACACATACATAC 59.539 44.000 0.00 0.00 0.00 2.39
913 3855 5.127682 AGCAGAGATCACACACATACATACA 59.872 40.000 0.00 0.00 0.00 2.29
914 3856 5.233050 GCAGAGATCACACACATACATACAC 59.767 44.000 0.00 0.00 0.00 2.90
915 3857 6.567959 CAGAGATCACACACATACATACACT 58.432 40.000 0.00 0.00 0.00 3.55
916 3858 6.474751 CAGAGATCACACACATACATACACTG 59.525 42.308 0.00 0.00 0.00 3.66
917 3859 6.378280 AGAGATCACACACATACATACACTGA 59.622 38.462 0.00 0.00 0.00 3.41
918 3860 7.069208 AGAGATCACACACATACATACACTGAT 59.931 37.037 0.00 0.00 0.00 2.90
986 3928 3.596667 GATCGACCGATCCCTCGCG 62.597 68.421 18.61 0.00 43.71 5.87
993 3935 2.029221 GATCCCTCGCGGTTAGCC 59.971 66.667 6.13 0.00 44.76 3.93
1185 4151 0.874175 TGCTCGACACGAAACAGGTG 60.874 55.000 0.00 0.00 41.15 4.00
1430 4432 4.388499 CGTCGTGGTGGAAGGGGG 62.388 72.222 0.00 0.00 0.00 5.40
1674 4682 2.268920 GACTCCTGGCAATGGCGA 59.731 61.111 1.51 0.00 42.47 5.54
1756 4767 0.456824 GATCACAGCGACTTGAGCGA 60.457 55.000 0.00 0.00 40.04 4.93
1786 4800 4.911610 CGTTGACAAGCAAGAACCTTAATG 59.088 41.667 0.00 0.00 37.12 1.90
1792 4837 1.478105 GCAAGAACCTTAATGCCCTGG 59.522 52.381 0.00 0.00 32.73 4.45
1793 4838 2.102578 CAAGAACCTTAATGCCCTGGG 58.897 52.381 8.86 8.86 0.00 4.45
1919 5035 3.244579 GTGTTGTAAGTGGTCTCGTTGTC 59.755 47.826 0.00 0.00 0.00 3.18
1977 5093 4.036352 GTGTTCGAGTGATCGTAATCTCC 58.964 47.826 0.00 0.00 32.75 3.71
1988 5104 6.418226 GTGATCGTAATCTCCATAACTCACAC 59.582 42.308 0.00 0.00 32.75 3.82
2009 5125 2.993220 CGCATGTACTTTCAGTGCACTA 59.007 45.455 21.20 1.09 43.36 2.74
2201 7058 3.211045 TGACCAAAAGGGAAAGAGAACG 58.789 45.455 0.00 0.00 41.15 3.95
2214 7071 1.982073 GAGAACGGGATGCCAAAGCG 61.982 60.000 3.39 0.00 44.31 4.68
2339 7217 0.880718 GATCCGGCGAGACCAAATCC 60.881 60.000 9.30 0.00 39.03 3.01
2357 7235 1.495584 CCGGGCAAATCGATACGGTG 61.496 60.000 0.00 0.00 36.78 4.94
2489 7695 0.601558 GTAGCTCTGGTCACGGTGAA 59.398 55.000 13.23 0.00 0.00 3.18
2492 7698 2.050269 CTCTGGTCACGGTGAACCT 58.950 57.895 22.53 0.00 31.76 3.50
2495 7701 1.616865 TCTGGTCACGGTGAACCTAAG 59.383 52.381 22.53 13.71 31.76 2.18
2503 7709 1.067071 CGGTGAACCTAAGACTGGACC 60.067 57.143 0.00 0.00 0.00 4.46
2504 7710 1.278413 GGTGAACCTAAGACTGGACCC 59.722 57.143 0.00 0.00 0.00 4.46
2505 7711 2.258109 GTGAACCTAAGACTGGACCCT 58.742 52.381 0.00 0.00 0.00 4.34
2506 7712 3.438183 GTGAACCTAAGACTGGACCCTA 58.562 50.000 0.00 0.00 0.00 3.53
2507 7713 3.195182 GTGAACCTAAGACTGGACCCTAC 59.805 52.174 0.00 0.00 0.00 3.18
2508 7714 3.181415 TGAACCTAAGACTGGACCCTACA 60.181 47.826 0.00 0.00 0.00 2.74
2509 7715 3.555117 ACCTAAGACTGGACCCTACAA 57.445 47.619 0.00 0.00 0.00 2.41
2510 7716 3.442076 ACCTAAGACTGGACCCTACAAG 58.558 50.000 0.00 0.00 0.00 3.16
2511 7717 3.077088 ACCTAAGACTGGACCCTACAAGA 59.923 47.826 0.00 0.00 0.00 3.02
2512 7718 4.094476 CCTAAGACTGGACCCTACAAGAA 58.906 47.826 0.00 0.00 0.00 2.52
2513 7719 4.530946 CCTAAGACTGGACCCTACAAGAAA 59.469 45.833 0.00 0.00 0.00 2.52
2514 7720 5.012768 CCTAAGACTGGACCCTACAAGAAAA 59.987 44.000 0.00 0.00 0.00 2.29
2515 7721 5.382664 AAGACTGGACCCTACAAGAAAAA 57.617 39.130 0.00 0.00 0.00 1.94
2536 7742 1.692411 AAAACACTGTCCAGAAGGCC 58.308 50.000 0.00 0.00 33.74 5.19
2537 7743 0.846693 AAACACTGTCCAGAAGGCCT 59.153 50.000 0.00 0.00 33.74 5.19
2538 7744 0.846693 AACACTGTCCAGAAGGCCTT 59.153 50.000 20.65 20.65 33.74 4.35
2539 7745 1.729586 ACACTGTCCAGAAGGCCTTA 58.270 50.000 20.54 0.00 33.74 2.69
2540 7746 1.348036 ACACTGTCCAGAAGGCCTTAC 59.652 52.381 20.54 13.80 33.74 2.34
2541 7747 1.347707 CACTGTCCAGAAGGCCTTACA 59.652 52.381 20.54 17.90 33.74 2.41
2542 7748 1.348036 ACTGTCCAGAAGGCCTTACAC 59.652 52.381 20.54 12.83 33.74 2.90
2543 7749 1.347707 CTGTCCAGAAGGCCTTACACA 59.652 52.381 20.54 16.60 33.74 3.72
2544 7750 1.771854 TGTCCAGAAGGCCTTACACAA 59.228 47.619 20.54 0.00 33.74 3.33
2545 7751 2.152016 GTCCAGAAGGCCTTACACAAC 58.848 52.381 20.54 9.72 33.74 3.32
2546 7752 1.771854 TCCAGAAGGCCTTACACAACA 59.228 47.619 20.54 0.00 33.74 3.33
2547 7753 2.173782 TCCAGAAGGCCTTACACAACAA 59.826 45.455 20.54 0.00 33.74 2.83
2548 7754 2.293399 CCAGAAGGCCTTACACAACAAC 59.707 50.000 20.54 1.98 0.00 3.32
2549 7755 2.948979 CAGAAGGCCTTACACAACAACA 59.051 45.455 20.54 0.00 0.00 3.33
2550 7756 3.569701 CAGAAGGCCTTACACAACAACAT 59.430 43.478 20.54 0.00 0.00 2.71
2551 7757 3.569701 AGAAGGCCTTACACAACAACATG 59.430 43.478 20.54 0.00 0.00 3.21
2552 7758 2.238521 AGGCCTTACACAACAACATGG 58.761 47.619 0.00 0.00 0.00 3.66
2553 7759 2.158534 AGGCCTTACACAACAACATGGA 60.159 45.455 0.00 0.00 0.00 3.41
2554 7760 2.825532 GGCCTTACACAACAACATGGAT 59.174 45.455 0.00 0.00 0.00 3.41
2555 7761 3.258123 GGCCTTACACAACAACATGGATT 59.742 43.478 0.00 0.00 0.00 3.01
2556 7762 4.262420 GGCCTTACACAACAACATGGATTT 60.262 41.667 0.00 0.00 0.00 2.17
2557 7763 4.923281 GCCTTACACAACAACATGGATTTC 59.077 41.667 0.00 0.00 0.00 2.17
2558 7764 5.469479 CCTTACACAACAACATGGATTTCC 58.531 41.667 0.00 0.00 0.00 3.13
2568 7774 3.976704 TGGATTTCCACTTGCCGAT 57.023 47.368 0.00 0.00 42.01 4.18
2569 7775 1.750193 TGGATTTCCACTTGCCGATC 58.250 50.000 0.00 0.00 42.01 3.69
2570 7776 1.281867 TGGATTTCCACTTGCCGATCT 59.718 47.619 0.00 0.00 42.01 2.75
2571 7777 1.943340 GGATTTCCACTTGCCGATCTC 59.057 52.381 0.00 0.00 35.64 2.75
2572 7778 1.943340 GATTTCCACTTGCCGATCTCC 59.057 52.381 0.00 0.00 0.00 3.71
2573 7779 0.035439 TTTCCACTTGCCGATCTCCC 60.035 55.000 0.00 0.00 0.00 4.30
2574 7780 1.910580 TTCCACTTGCCGATCTCCCC 61.911 60.000 0.00 0.00 0.00 4.81
2575 7781 2.202932 CACTTGCCGATCTCCCCG 60.203 66.667 0.00 0.00 0.00 5.73
2576 7782 4.162690 ACTTGCCGATCTCCCCGC 62.163 66.667 0.00 0.00 0.00 6.13
2577 7783 4.918201 CTTGCCGATCTCCCCGCC 62.918 72.222 0.00 0.00 0.00 6.13
2580 7786 4.996434 GCCGATCTCCCCGCCATG 62.996 72.222 0.00 0.00 0.00 3.66
2581 7787 3.233980 CCGATCTCCCCGCCATGA 61.234 66.667 0.00 0.00 0.00 3.07
2582 7788 2.341543 CGATCTCCCCGCCATGAG 59.658 66.667 0.00 0.00 0.00 2.90
2583 7789 2.502492 CGATCTCCCCGCCATGAGT 61.502 63.158 0.00 0.00 0.00 3.41
2584 7790 1.070445 GATCTCCCCGCCATGAGTG 59.930 63.158 0.00 0.00 0.00 3.51
2595 7801 3.521995 CATGAGTGGAGAGTGCGTT 57.478 52.632 0.00 0.00 0.00 4.84
2596 7802 1.073964 CATGAGTGGAGAGTGCGTTG 58.926 55.000 0.00 0.00 0.00 4.10
2597 7803 0.969149 ATGAGTGGAGAGTGCGTTGA 59.031 50.000 0.00 0.00 0.00 3.18
2598 7804 0.969149 TGAGTGGAGAGTGCGTTGAT 59.031 50.000 0.00 0.00 0.00 2.57
2599 7805 1.067565 TGAGTGGAGAGTGCGTTGATC 60.068 52.381 0.00 0.00 0.00 2.92
2600 7806 1.203523 GAGTGGAGAGTGCGTTGATCT 59.796 52.381 0.00 0.00 0.00 2.75
2601 7807 2.423892 GAGTGGAGAGTGCGTTGATCTA 59.576 50.000 0.00 0.00 0.00 1.98
2602 7808 2.425312 AGTGGAGAGTGCGTTGATCTAG 59.575 50.000 0.00 0.00 0.00 2.43
2603 7809 2.164624 GTGGAGAGTGCGTTGATCTAGT 59.835 50.000 0.00 0.00 0.00 2.57
2604 7810 2.826128 TGGAGAGTGCGTTGATCTAGTT 59.174 45.455 0.00 0.00 0.00 2.24
2605 7811 3.258372 TGGAGAGTGCGTTGATCTAGTTT 59.742 43.478 0.00 0.00 0.00 2.66
2606 7812 3.614616 GGAGAGTGCGTTGATCTAGTTTG 59.385 47.826 0.00 0.00 0.00 2.93
2607 7813 2.996621 AGAGTGCGTTGATCTAGTTTGC 59.003 45.455 0.00 0.00 0.00 3.68
2608 7814 2.996621 GAGTGCGTTGATCTAGTTTGCT 59.003 45.455 0.00 0.00 0.00 3.91
2609 7815 3.403038 AGTGCGTTGATCTAGTTTGCTT 58.597 40.909 0.00 0.00 0.00 3.91
2610 7816 3.815401 AGTGCGTTGATCTAGTTTGCTTT 59.185 39.130 0.00 0.00 0.00 3.51
2611 7817 3.908382 GTGCGTTGATCTAGTTTGCTTTG 59.092 43.478 0.00 0.00 0.00 2.77
2612 7818 3.058293 TGCGTTGATCTAGTTTGCTTTGG 60.058 43.478 0.00 0.00 0.00 3.28
2613 7819 3.492313 CGTTGATCTAGTTTGCTTTGGC 58.508 45.455 0.00 0.00 39.26 4.52
2614 7820 3.492313 GTTGATCTAGTTTGCTTTGGCG 58.508 45.455 0.00 0.00 42.25 5.69
2615 7821 2.778299 TGATCTAGTTTGCTTTGGCGT 58.222 42.857 0.00 0.00 42.25 5.68
2616 7822 3.146066 TGATCTAGTTTGCTTTGGCGTT 58.854 40.909 0.00 0.00 42.25 4.84
2617 7823 3.568007 TGATCTAGTTTGCTTTGGCGTTT 59.432 39.130 0.00 0.00 42.25 3.60
2618 7824 4.037446 TGATCTAGTTTGCTTTGGCGTTTT 59.963 37.500 0.00 0.00 42.25 2.43
2619 7825 4.379339 TCTAGTTTGCTTTGGCGTTTTT 57.621 36.364 0.00 0.00 42.25 1.94
2620 7826 4.109050 TCTAGTTTGCTTTGGCGTTTTTG 58.891 39.130 0.00 0.00 42.25 2.44
2621 7827 2.694213 AGTTTGCTTTGGCGTTTTTGT 58.306 38.095 0.00 0.00 42.25 2.83
2622 7828 2.670905 AGTTTGCTTTGGCGTTTTTGTC 59.329 40.909 0.00 0.00 42.25 3.18
2623 7829 1.272781 TTGCTTTGGCGTTTTTGTCG 58.727 45.000 0.00 0.00 42.25 4.35
2624 7830 0.452184 TGCTTTGGCGTTTTTGTCGA 59.548 45.000 0.00 0.00 42.25 4.20
2625 7831 1.120437 GCTTTGGCGTTTTTGTCGAG 58.880 50.000 0.00 0.00 0.00 4.04
2626 7832 1.120437 CTTTGGCGTTTTTGTCGAGC 58.880 50.000 0.00 0.00 0.00 5.03
2627 7833 0.736053 TTTGGCGTTTTTGTCGAGCT 59.264 45.000 0.00 0.00 0.00 4.09
2628 7834 0.306533 TTGGCGTTTTTGTCGAGCTC 59.693 50.000 2.73 2.73 0.00 4.09
2629 7835 0.531974 TGGCGTTTTTGTCGAGCTCT 60.532 50.000 12.85 0.00 0.00 4.09
2630 7836 1.269883 TGGCGTTTTTGTCGAGCTCTA 60.270 47.619 12.85 0.00 0.00 2.43
2631 7837 1.796459 GGCGTTTTTGTCGAGCTCTAA 59.204 47.619 12.85 1.45 0.00 2.10
2632 7838 2.159827 GGCGTTTTTGTCGAGCTCTAAG 60.160 50.000 12.85 0.00 0.00 2.18
2633 7839 2.159827 GCGTTTTTGTCGAGCTCTAAGG 60.160 50.000 12.85 0.00 0.00 2.69
2634 7840 3.057734 CGTTTTTGTCGAGCTCTAAGGT 58.942 45.455 12.85 0.00 0.00 3.50
2635 7841 3.120991 CGTTTTTGTCGAGCTCTAAGGTG 60.121 47.826 12.85 0.00 0.00 4.00
2636 7842 3.746045 TTTTGTCGAGCTCTAAGGTGT 57.254 42.857 12.85 0.00 0.00 4.16
2637 7843 3.746045 TTTGTCGAGCTCTAAGGTGTT 57.254 42.857 12.85 0.00 0.00 3.32
2638 7844 3.299340 TTGTCGAGCTCTAAGGTGTTC 57.701 47.619 12.85 0.00 0.00 3.18
2639 7845 1.199327 TGTCGAGCTCTAAGGTGTTCG 59.801 52.381 12.85 0.00 39.65 3.95
2640 7846 0.809385 TCGAGCTCTAAGGTGTTCGG 59.191 55.000 12.85 0.00 39.11 4.30
2641 7847 0.526662 CGAGCTCTAAGGTGTTCGGT 59.473 55.000 12.85 0.00 36.53 4.69
2642 7848 1.067776 CGAGCTCTAAGGTGTTCGGTT 60.068 52.381 12.85 0.00 36.53 4.44
2643 7849 2.608268 GAGCTCTAAGGTGTTCGGTTC 58.392 52.381 6.43 0.00 0.00 3.62
2644 7850 1.067776 AGCTCTAAGGTGTTCGGTTCG 60.068 52.381 0.00 0.00 0.00 3.95
2645 7851 1.992170 CTCTAAGGTGTTCGGTTCGG 58.008 55.000 0.00 0.00 0.00 4.30
2646 7852 1.271656 CTCTAAGGTGTTCGGTTCGGT 59.728 52.381 0.00 0.00 0.00 4.69
2647 7853 1.688197 TCTAAGGTGTTCGGTTCGGTT 59.312 47.619 0.00 0.00 0.00 4.44
2648 7854 1.796459 CTAAGGTGTTCGGTTCGGTTG 59.204 52.381 0.00 0.00 0.00 3.77
2649 7855 0.816421 AAGGTGTTCGGTTCGGTTGG 60.816 55.000 0.00 0.00 0.00 3.77
2650 7856 2.255881 GGTGTTCGGTTCGGTTGGG 61.256 63.158 0.00 0.00 0.00 4.12
2651 7857 1.227615 GTGTTCGGTTCGGTTGGGA 60.228 57.895 0.00 0.00 0.00 4.37
2652 7858 1.227615 TGTTCGGTTCGGTTGGGAC 60.228 57.895 0.00 0.00 0.00 4.46
2653 7859 2.029369 TTCGGTTCGGTTGGGACG 59.971 61.111 0.00 0.00 0.00 4.79
2654 7860 4.668118 TCGGTTCGGTTGGGACGC 62.668 66.667 0.00 0.00 0.00 5.19
2666 7872 4.065281 GGACGCGGCCTGTGTACT 62.065 66.667 27.81 0.00 42.62 2.73
2667 7873 2.506438 GACGCGGCCTGTGTACTC 60.506 66.667 12.47 0.00 42.62 2.59
2668 7874 2.989824 ACGCGGCCTGTGTACTCT 60.990 61.111 12.47 0.00 40.21 3.24
2669 7875 2.507102 CGCGGCCTGTGTACTCTG 60.507 66.667 0.00 0.00 0.00 3.35
2670 7876 2.657237 GCGGCCTGTGTACTCTGT 59.343 61.111 0.00 0.00 0.00 3.41
2671 7877 1.888018 GCGGCCTGTGTACTCTGTA 59.112 57.895 0.00 0.00 0.00 2.74
2672 7878 0.460311 GCGGCCTGTGTACTCTGTAT 59.540 55.000 0.00 0.00 0.00 2.29
2673 7879 1.536284 GCGGCCTGTGTACTCTGTATC 60.536 57.143 0.00 0.00 0.00 2.24
2674 7880 2.025155 CGGCCTGTGTACTCTGTATCT 58.975 52.381 0.00 0.00 0.00 1.98
2675 7881 2.223595 CGGCCTGTGTACTCTGTATCTG 60.224 54.545 0.00 0.00 0.00 2.90
2676 7882 2.761208 GGCCTGTGTACTCTGTATCTGT 59.239 50.000 0.00 0.00 0.00 3.41
2677 7883 3.181485 GGCCTGTGTACTCTGTATCTGTC 60.181 52.174 0.00 0.00 0.00 3.51
2678 7884 3.697045 GCCTGTGTACTCTGTATCTGTCT 59.303 47.826 0.00 0.00 0.00 3.41
2679 7885 4.158764 GCCTGTGTACTCTGTATCTGTCTT 59.841 45.833 0.00 0.00 0.00 3.01
2680 7886 5.677598 GCCTGTGTACTCTGTATCTGTCTTC 60.678 48.000 0.00 0.00 0.00 2.87
2681 7887 5.650266 CCTGTGTACTCTGTATCTGTCTTCT 59.350 44.000 0.00 0.00 0.00 2.85
2682 7888 6.151985 CCTGTGTACTCTGTATCTGTCTTCTT 59.848 42.308 0.00 0.00 0.00 2.52
2683 7889 7.147143 TGTGTACTCTGTATCTGTCTTCTTC 57.853 40.000 0.00 0.00 0.00 2.87
2684 7890 6.128254 TGTGTACTCTGTATCTGTCTTCTTCG 60.128 42.308 0.00 0.00 0.00 3.79
2685 7891 4.364415 ACTCTGTATCTGTCTTCTTCGC 57.636 45.455 0.00 0.00 0.00 4.70
2686 7892 3.129638 ACTCTGTATCTGTCTTCTTCGCC 59.870 47.826 0.00 0.00 0.00 5.54
2687 7893 3.089284 TCTGTATCTGTCTTCTTCGCCA 58.911 45.455 0.00 0.00 0.00 5.69
2688 7894 3.701542 TCTGTATCTGTCTTCTTCGCCAT 59.298 43.478 0.00 0.00 0.00 4.40
2689 7895 4.160439 TCTGTATCTGTCTTCTTCGCCATT 59.840 41.667 0.00 0.00 0.00 3.16
2690 7896 4.183865 TGTATCTGTCTTCTTCGCCATTG 58.816 43.478 0.00 0.00 0.00 2.82
2691 7897 2.839486 TCTGTCTTCTTCGCCATTGT 57.161 45.000 0.00 0.00 0.00 2.71
2692 7898 3.126001 TCTGTCTTCTTCGCCATTGTT 57.874 42.857 0.00 0.00 0.00 2.83
2693 7899 3.476552 TCTGTCTTCTTCGCCATTGTTT 58.523 40.909 0.00 0.00 0.00 2.83
2694 7900 3.250762 TCTGTCTTCTTCGCCATTGTTTG 59.749 43.478 0.00 0.00 0.00 2.93
2706 7912 3.132925 CCATTGTTTGGCTTGAGTTTGG 58.867 45.455 0.00 0.00 39.09 3.28
2707 7913 2.977772 TTGTTTGGCTTGAGTTTGGG 57.022 45.000 0.00 0.00 0.00 4.12
2708 7914 0.463620 TGTTTGGCTTGAGTTTGGGC 59.536 50.000 0.00 0.00 0.00 5.36
2709 7915 0.463620 GTTTGGCTTGAGTTTGGGCA 59.536 50.000 0.00 0.00 0.00 5.36
2710 7916 1.134551 GTTTGGCTTGAGTTTGGGCAA 60.135 47.619 0.00 0.00 42.24 4.52
2711 7917 0.752054 TTGGCTTGAGTTTGGGCAAG 59.248 50.000 0.00 0.00 43.26 4.01
2712 7918 0.106268 TGGCTTGAGTTTGGGCAAGA 60.106 50.000 0.00 0.00 43.11 3.02
2713 7919 0.315251 GGCTTGAGTTTGGGCAAGAC 59.685 55.000 0.00 0.00 43.11 3.01
2714 7920 0.040067 GCTTGAGTTTGGGCAAGACG 60.040 55.000 0.00 0.00 43.11 4.18
2715 7921 1.593196 CTTGAGTTTGGGCAAGACGA 58.407 50.000 0.00 0.00 43.11 4.20
2716 7922 1.532868 CTTGAGTTTGGGCAAGACGAG 59.467 52.381 0.00 0.00 43.11 4.18
2717 7923 0.468226 TGAGTTTGGGCAAGACGAGT 59.532 50.000 0.00 0.00 0.00 4.18
2718 7924 1.134220 TGAGTTTGGGCAAGACGAGTT 60.134 47.619 0.00 0.00 0.00 3.01
2719 7925 1.264288 GAGTTTGGGCAAGACGAGTTG 59.736 52.381 0.00 0.00 0.00 3.16
2720 7926 1.021968 GTTTGGGCAAGACGAGTTGT 58.978 50.000 0.00 0.00 0.00 3.32
2721 7927 1.021202 TTTGGGCAAGACGAGTTGTG 58.979 50.000 0.00 0.00 0.00 3.33
2722 7928 0.107410 TTGGGCAAGACGAGTTGTGT 60.107 50.000 0.00 0.00 0.00 3.72
2723 7929 0.813610 TGGGCAAGACGAGTTGTGTG 60.814 55.000 0.00 0.00 0.00 3.82
2724 7930 0.814010 GGGCAAGACGAGTTGTGTGT 60.814 55.000 0.00 0.00 0.00 3.72
2725 7931 0.582005 GGCAAGACGAGTTGTGTGTC 59.418 55.000 0.00 0.00 0.00 3.67
2726 7932 0.229753 GCAAGACGAGTTGTGTGTCG 59.770 55.000 0.00 0.00 42.04 4.35
2732 7938 2.071604 CGAGTTGTGTGTCGTTGTTG 57.928 50.000 0.00 0.00 0.00 3.33
2733 7939 1.810197 GAGTTGTGTGTCGTTGTTGC 58.190 50.000 0.00 0.00 0.00 4.17
2734 7940 0.450184 AGTTGTGTGTCGTTGTTGCC 59.550 50.000 0.00 0.00 0.00 4.52
2735 7941 0.450184 GTTGTGTGTCGTTGTTGCCT 59.550 50.000 0.00 0.00 0.00 4.75
2736 7942 1.135517 GTTGTGTGTCGTTGTTGCCTT 60.136 47.619 0.00 0.00 0.00 4.35
2737 7943 0.449786 TGTGTGTCGTTGTTGCCTTG 59.550 50.000 0.00 0.00 0.00 3.61
2738 7944 0.248458 GTGTGTCGTTGTTGCCTTGG 60.248 55.000 0.00 0.00 0.00 3.61
2739 7945 0.678366 TGTGTCGTTGTTGCCTTGGT 60.678 50.000 0.00 0.00 0.00 3.67
2740 7946 0.248458 GTGTCGTTGTTGCCTTGGTG 60.248 55.000 0.00 0.00 0.00 4.17
2741 7947 1.358759 GTCGTTGTTGCCTTGGTGG 59.641 57.895 0.00 0.00 39.35 4.61
2742 7948 1.098712 GTCGTTGTTGCCTTGGTGGA 61.099 55.000 0.00 0.00 38.35 4.02
2743 7949 0.179004 TCGTTGTTGCCTTGGTGGAT 60.179 50.000 0.00 0.00 38.35 3.41
2744 7950 0.039256 CGTTGTTGCCTTGGTGGATG 60.039 55.000 0.00 0.00 38.35 3.51
2745 7951 1.039856 GTTGTTGCCTTGGTGGATGT 58.960 50.000 0.00 0.00 38.35 3.06
2746 7952 1.039068 TTGTTGCCTTGGTGGATGTG 58.961 50.000 0.00 0.00 38.35 3.21
2747 7953 0.827089 TGTTGCCTTGGTGGATGTGG 60.827 55.000 0.00 0.00 38.35 4.17
2748 7954 0.827507 GTTGCCTTGGTGGATGTGGT 60.828 55.000 0.00 0.00 38.35 4.16
2749 7955 0.827089 TTGCCTTGGTGGATGTGGTG 60.827 55.000 0.00 0.00 38.35 4.17
2750 7956 1.228552 GCCTTGGTGGATGTGGTGT 60.229 57.895 0.00 0.00 38.35 4.16
2751 7957 0.827507 GCCTTGGTGGATGTGGTGTT 60.828 55.000 0.00 0.00 38.35 3.32
2752 7958 1.546773 GCCTTGGTGGATGTGGTGTTA 60.547 52.381 0.00 0.00 38.35 2.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.224069 CCGTCTCCTGTTGTGCAGTG 61.224 60.000 0.00 0.00 43.55 3.66
1 2 1.069765 CCGTCTCCTGTTGTGCAGT 59.930 57.895 0.00 0.00 43.55 4.40
27 28 2.667536 AGCCACACAAGCTCTGCG 60.668 61.111 0.00 0.00 34.91 5.18
49 50 4.980805 TGTTCCTGGTGCCGCGAC 62.981 66.667 8.23 0.00 0.00 5.19
79 80 2.467566 TTTGGAACGGAGGAAGTAGC 57.532 50.000 0.00 0.00 0.00 3.58
83 84 3.617263 CGAGTAATTTGGAACGGAGGAAG 59.383 47.826 0.00 0.00 0.00 3.46
84 85 3.007182 ACGAGTAATTTGGAACGGAGGAA 59.993 43.478 0.00 0.00 0.00 3.36
85 86 2.564062 ACGAGTAATTTGGAACGGAGGA 59.436 45.455 0.00 0.00 0.00 3.71
87 88 3.424433 GCAACGAGTAATTTGGAACGGAG 60.424 47.826 0.00 0.00 0.00 4.63
89 90 2.224549 TGCAACGAGTAATTTGGAACGG 59.775 45.455 0.00 0.00 0.00 4.44
92 93 5.759506 TTTCTGCAACGAGTAATTTGGAA 57.240 34.783 0.00 0.00 0.00 3.53
93 94 5.471797 TCATTTCTGCAACGAGTAATTTGGA 59.528 36.000 0.00 0.00 0.00 3.53
94 95 5.698832 TCATTTCTGCAACGAGTAATTTGG 58.301 37.500 0.00 0.00 0.00 3.28
95 96 7.801547 ATTCATTTCTGCAACGAGTAATTTG 57.198 32.000 0.00 0.00 0.00 2.32
137 138 8.894731 GTCGTATGTATGGATGTATCTAGATGT 58.105 37.037 15.79 1.25 0.00 3.06
138 139 8.893727 TGTCGTATGTATGGATGTATCTAGATG 58.106 37.037 15.79 0.00 0.00 2.90
139 140 9.462606 TTGTCGTATGTATGGATGTATCTAGAT 57.537 33.333 10.73 10.73 0.00 1.98
140 141 8.857694 TTGTCGTATGTATGGATGTATCTAGA 57.142 34.615 0.00 0.00 0.00 2.43
141 142 8.731605 ACTTGTCGTATGTATGGATGTATCTAG 58.268 37.037 0.00 0.00 0.00 2.43
142 143 8.631480 ACTTGTCGTATGTATGGATGTATCTA 57.369 34.615 0.00 0.00 0.00 1.98
143 144 7.526142 ACTTGTCGTATGTATGGATGTATCT 57.474 36.000 0.00 0.00 0.00 1.98
144 145 9.856488 ATTACTTGTCGTATGTATGGATGTATC 57.144 33.333 0.00 0.00 0.00 2.24
147 148 8.826710 CAAATTACTTGTCGTATGTATGGATGT 58.173 33.333 0.00 0.00 0.00 3.06
148 149 8.282592 CCAAATTACTTGTCGTATGTATGGATG 58.717 37.037 0.00 0.00 32.65 3.51
149 150 8.208224 TCCAAATTACTTGTCGTATGTATGGAT 58.792 33.333 0.00 0.00 32.65 3.41
150 151 7.557724 TCCAAATTACTTGTCGTATGTATGGA 58.442 34.615 0.00 0.00 32.65 3.41
151 152 7.780008 TCCAAATTACTTGTCGTATGTATGG 57.220 36.000 0.00 0.00 32.65 2.74
152 153 9.650371 CATTCCAAATTACTTGTCGTATGTATG 57.350 33.333 0.00 0.00 32.65 2.39
153 154 8.836413 CCATTCCAAATTACTTGTCGTATGTAT 58.164 33.333 0.00 0.00 32.65 2.29
154 155 7.281324 CCCATTCCAAATTACTTGTCGTATGTA 59.719 37.037 0.00 0.00 32.65 2.29
155 156 6.094881 CCCATTCCAAATTACTTGTCGTATGT 59.905 38.462 0.00 0.00 32.65 2.29
156 157 6.459573 CCCCATTCCAAATTACTTGTCGTATG 60.460 42.308 0.00 0.00 32.65 2.39
157 158 5.592688 CCCCATTCCAAATTACTTGTCGTAT 59.407 40.000 0.00 0.00 32.65 3.06
158 159 4.944930 CCCCATTCCAAATTACTTGTCGTA 59.055 41.667 0.00 0.00 32.65 3.43
159 160 3.761752 CCCCATTCCAAATTACTTGTCGT 59.238 43.478 0.00 0.00 32.65 4.34
160 161 3.130340 CCCCCATTCCAAATTACTTGTCG 59.870 47.826 0.00 0.00 32.65 4.35
161 162 4.349365 TCCCCCATTCCAAATTACTTGTC 58.651 43.478 0.00 0.00 32.65 3.18
162 163 4.045334 TCTCCCCCATTCCAAATTACTTGT 59.955 41.667 0.00 0.00 32.65 3.16
163 164 4.609301 TCTCCCCCATTCCAAATTACTTG 58.391 43.478 0.00 0.00 34.52 3.16
164 165 4.965283 TCTCCCCCATTCCAAATTACTT 57.035 40.909 0.00 0.00 0.00 2.24
165 166 4.965283 TTCTCCCCCATTCCAAATTACT 57.035 40.909 0.00 0.00 0.00 2.24
166 167 5.243954 GCTATTCTCCCCCATTCCAAATTAC 59.756 44.000 0.00 0.00 0.00 1.89
167 168 5.103301 TGCTATTCTCCCCCATTCCAAATTA 60.103 40.000 0.00 0.00 0.00 1.40
168 169 4.226384 GCTATTCTCCCCCATTCCAAATT 58.774 43.478 0.00 0.00 0.00 1.82
169 170 3.207321 TGCTATTCTCCCCCATTCCAAAT 59.793 43.478 0.00 0.00 0.00 2.32
170 171 2.584965 TGCTATTCTCCCCCATTCCAAA 59.415 45.455 0.00 0.00 0.00 3.28
171 172 2.091885 GTGCTATTCTCCCCCATTCCAA 60.092 50.000 0.00 0.00 0.00 3.53
172 173 1.494721 GTGCTATTCTCCCCCATTCCA 59.505 52.381 0.00 0.00 0.00 3.53
173 174 1.494721 TGTGCTATTCTCCCCCATTCC 59.505 52.381 0.00 0.00 0.00 3.01
174 175 3.515602 ATGTGCTATTCTCCCCCATTC 57.484 47.619 0.00 0.00 0.00 2.67
175 176 4.447762 GGTTATGTGCTATTCTCCCCCATT 60.448 45.833 0.00 0.00 0.00 3.16
176 177 3.074538 GGTTATGTGCTATTCTCCCCCAT 59.925 47.826 0.00 0.00 0.00 4.00
177 178 2.441750 GGTTATGTGCTATTCTCCCCCA 59.558 50.000 0.00 0.00 0.00 4.96
178 179 2.224793 GGGTTATGTGCTATTCTCCCCC 60.225 54.545 0.00 0.00 0.00 5.40
179 180 2.711547 AGGGTTATGTGCTATTCTCCCC 59.288 50.000 0.00 0.00 34.74 4.81
180 181 3.136626 ACAGGGTTATGTGCTATTCTCCC 59.863 47.826 0.00 0.00 30.46 4.30
181 182 4.141711 TGACAGGGTTATGTGCTATTCTCC 60.142 45.833 0.00 0.00 32.25 3.71
182 183 5.023533 TGACAGGGTTATGTGCTATTCTC 57.976 43.478 0.00 0.00 32.25 2.87
183 184 5.636903 ATGACAGGGTTATGTGCTATTCT 57.363 39.130 0.00 0.00 32.25 2.40
184 185 6.699575 AAATGACAGGGTTATGTGCTATTC 57.300 37.500 0.00 0.00 32.25 1.75
185 186 6.663093 TGAAAATGACAGGGTTATGTGCTATT 59.337 34.615 0.00 0.00 32.25 1.73
186 187 6.186957 TGAAAATGACAGGGTTATGTGCTAT 58.813 36.000 0.00 0.00 32.25 2.97
187 188 5.565509 TGAAAATGACAGGGTTATGTGCTA 58.434 37.500 0.00 0.00 32.25 3.49
188 189 4.406456 TGAAAATGACAGGGTTATGTGCT 58.594 39.130 0.00 0.00 32.25 4.40
189 190 4.782019 TGAAAATGACAGGGTTATGTGC 57.218 40.909 0.00 0.00 32.25 4.57
190 191 6.748132 AGTTTGAAAATGACAGGGTTATGTG 58.252 36.000 0.00 0.00 32.25 3.21
191 192 6.549364 TGAGTTTGAAAATGACAGGGTTATGT 59.451 34.615 0.00 0.00 35.68 2.29
192 193 6.980593 TGAGTTTGAAAATGACAGGGTTATG 58.019 36.000 0.00 0.00 0.00 1.90
193 194 7.595819 TTGAGTTTGAAAATGACAGGGTTAT 57.404 32.000 0.00 0.00 0.00 1.89
194 195 7.521423 CGATTGAGTTTGAAAATGACAGGGTTA 60.521 37.037 0.00 0.00 0.00 2.85
199 200 4.319115 CGCGATTGAGTTTGAAAATGACAG 59.681 41.667 0.00 0.00 0.00 3.51
202 203 3.233578 GCGCGATTGAGTTTGAAAATGA 58.766 40.909 12.10 0.00 0.00 2.57
211 212 0.110056 CAAAGCTGCGCGATTGAGTT 60.110 50.000 12.10 0.00 34.11 3.01
285 290 1.588824 ATGATGCCAAGTGTGCGTGG 61.589 55.000 0.00 0.00 45.27 4.94
367 372 1.692042 CCTCCATCCTGCCCTCACT 60.692 63.158 0.00 0.00 0.00 3.41
377 382 1.742768 CACTACTCCGCCTCCATCC 59.257 63.158 0.00 0.00 0.00 3.51
475 501 1.222115 GCCGTCTTGACTGACCACAC 61.222 60.000 0.00 0.00 33.70 3.82
476 502 1.069090 GCCGTCTTGACTGACCACA 59.931 57.895 0.00 0.00 33.70 4.17
477 503 1.668151 GGCCGTCTTGACTGACCAC 60.668 63.158 0.00 0.00 33.70 4.16
478 504 2.741092 GGCCGTCTTGACTGACCA 59.259 61.111 0.00 0.00 33.70 4.02
480 506 2.432628 CCGGCCGTCTTGACTGAC 60.433 66.667 26.12 0.00 0.00 3.51
481 507 2.035237 AAACCGGCCGTCTTGACTGA 62.035 55.000 26.12 0.00 0.00 3.41
483 509 0.611714 ATAAACCGGCCGTCTTGACT 59.388 50.000 26.12 3.36 0.00 3.41
650 2614 5.368989 TGCAATTGACCGGGTTTTTAAATT 58.631 33.333 10.34 1.02 0.00 1.82
652 2616 4.402056 TGCAATTGACCGGGTTTTTAAA 57.598 36.364 10.34 0.00 0.00 1.52
653 2617 4.141914 ACTTGCAATTGACCGGGTTTTTAA 60.142 37.500 10.34 0.00 0.00 1.52
654 2618 3.385111 ACTTGCAATTGACCGGGTTTTTA 59.615 39.130 10.34 0.00 0.00 1.52
661 3564 2.095768 CAGTGTACTTGCAATTGACCGG 60.096 50.000 10.34 0.00 0.00 5.28
662 3565 2.548057 ACAGTGTACTTGCAATTGACCG 59.452 45.455 10.34 0.00 0.00 4.79
671 3574 1.341606 GAGCTCGACAGTGTACTTGC 58.658 55.000 0.00 0.00 0.00 4.01
673 3576 1.542030 CTGGAGCTCGACAGTGTACTT 59.458 52.381 7.83 0.00 0.00 2.24
691 3594 7.065923 GGGTTCAAGGCTAAGTAAGAAATACTG 59.934 40.741 0.00 0.00 44.22 2.74
693 3596 6.882678 TGGGTTCAAGGCTAAGTAAGAAATAC 59.117 38.462 0.00 0.00 34.52 1.89
725 3632 1.001597 CCCGTAGCTAGCGAGTTTAGG 60.002 57.143 9.55 7.19 0.00 2.69
726 3633 1.599916 GCCCGTAGCTAGCGAGTTTAG 60.600 57.143 9.55 0.00 38.99 1.85
745 3656 4.873129 TCTCGATTGCGCCGGAGC 62.873 66.667 24.58 24.58 37.46 4.70
752 3664 1.299773 GAGGAGGCTCTCGATTGCG 60.300 63.158 15.23 0.00 39.35 4.85
803 3717 0.904865 TTCAGCTGAGGGACGTGGAT 60.905 55.000 17.43 0.00 0.00 3.41
882 3809 2.167900 TGTGTGATCTCTGCTGAGGATG 59.832 50.000 19.23 0.00 40.58 3.51
883 3810 2.168106 GTGTGTGATCTCTGCTGAGGAT 59.832 50.000 19.23 11.75 40.58 3.24
889 3816 4.750021 ATGTATGTGTGTGATCTCTGCT 57.250 40.909 0.00 0.00 0.00 4.24
905 3847 7.066307 TGGATGCTTGTATCAGTGTATGTAT 57.934 36.000 1.55 0.00 0.00 2.29
906 3848 6.478512 TGGATGCTTGTATCAGTGTATGTA 57.521 37.500 1.55 0.00 0.00 2.29
907 3849 5.357742 TGGATGCTTGTATCAGTGTATGT 57.642 39.130 1.55 0.00 0.00 2.29
908 3850 5.119743 CGATGGATGCTTGTATCAGTGTATG 59.880 44.000 1.55 0.00 0.00 2.39
909 3851 5.233225 CGATGGATGCTTGTATCAGTGTAT 58.767 41.667 1.55 0.00 0.00 2.29
910 3852 4.620982 CGATGGATGCTTGTATCAGTGTA 58.379 43.478 1.55 0.00 0.00 2.90
911 3853 3.461061 CGATGGATGCTTGTATCAGTGT 58.539 45.455 1.55 0.00 0.00 3.55
912 3854 2.222678 GCGATGGATGCTTGTATCAGTG 59.777 50.000 0.00 0.00 0.00 3.66
913 3855 2.487934 GCGATGGATGCTTGTATCAGT 58.512 47.619 0.00 0.00 0.00 3.41
914 3856 1.802960 GGCGATGGATGCTTGTATCAG 59.197 52.381 0.00 0.00 0.00 2.90
915 3857 1.873486 CGGCGATGGATGCTTGTATCA 60.873 52.381 0.00 0.00 0.00 2.15
916 3858 0.792640 CGGCGATGGATGCTTGTATC 59.207 55.000 0.00 0.00 0.00 2.24
917 3859 0.392706 TCGGCGATGGATGCTTGTAT 59.607 50.000 4.99 0.00 0.00 2.29
918 3860 0.392706 ATCGGCGATGGATGCTTGTA 59.607 50.000 23.36 0.00 0.00 2.41
986 3928 2.967615 GCATCGCTCCGGCTAACC 60.968 66.667 0.00 0.00 36.09 2.85
993 3935 2.821366 AAGCAAGGCATCGCTCCG 60.821 61.111 0.00 0.00 37.54 4.63
1089 4040 2.044650 CAGGGGACATGGCAGTGG 60.045 66.667 0.00 0.00 0.00 4.00
1430 4432 4.168291 CCGCCTCTCCCTTCTGCC 62.168 72.222 0.00 0.00 0.00 4.85
1725 4736 2.735444 CGCTGTGATCTTGTGACCGTAT 60.735 50.000 0.00 0.00 0.00 3.06
1786 4800 1.869824 TACCCAATCCAACCCAGGGC 61.870 60.000 4.91 0.00 43.47 5.19
1792 4837 4.620567 GCAGAATTTGTACCCAATCCAACC 60.621 45.833 0.00 0.00 0.00 3.77
1793 4838 4.494484 GCAGAATTTGTACCCAATCCAAC 58.506 43.478 0.00 0.00 0.00 3.77
1938 5054 2.699954 ACACTTGGAGATAAACCGCAG 58.300 47.619 0.00 0.00 0.00 5.18
1977 5093 5.120053 TGAAAGTACATGCGTGTGAGTTATG 59.880 40.000 21.92 0.00 39.39 1.90
2132 6985 2.508755 GAAGTTAGCCAACCGTGCGC 62.509 60.000 0.00 0.00 35.05 6.09
2180 7036 3.211045 CGTTCTCTTTCCCTTTTGGTCA 58.789 45.455 0.00 0.00 38.10 4.02
2312 7189 1.005630 CTCGCCGGATCAGGATTCC 60.006 63.158 16.86 0.00 0.00 3.01
2339 7217 0.808453 ACACCGTATCGATTTGCCCG 60.808 55.000 1.71 0.00 0.00 6.13
2357 7235 1.137513 GACACACTCCGCAGTACAAC 58.862 55.000 0.00 0.00 0.00 3.32
2489 7695 3.077088 TCTTGTAGGGTCCAGTCTTAGGT 59.923 47.826 0.00 0.00 0.00 3.08
2492 7698 6.503560 TTTTTCTTGTAGGGTCCAGTCTTA 57.496 37.500 0.00 0.00 0.00 2.10
2516 7722 2.031870 GGCCTTCTGGACAGTGTTTTT 58.968 47.619 0.00 0.00 42.34 1.94
2517 7723 1.215423 AGGCCTTCTGGACAGTGTTTT 59.785 47.619 0.00 0.00 46.30 2.43
2518 7724 0.846693 AGGCCTTCTGGACAGTGTTT 59.153 50.000 0.00 0.00 46.30 2.83
2519 7725 0.846693 AAGGCCTTCTGGACAGTGTT 59.153 50.000 13.78 0.00 46.30 3.32
2520 7726 1.348036 GTAAGGCCTTCTGGACAGTGT 59.652 52.381 24.49 0.00 46.30 3.55
2521 7727 1.347707 TGTAAGGCCTTCTGGACAGTG 59.652 52.381 24.49 0.00 46.30 3.66
2522 7728 1.348036 GTGTAAGGCCTTCTGGACAGT 59.652 52.381 24.49 0.00 46.30 3.55
2523 7729 1.347707 TGTGTAAGGCCTTCTGGACAG 59.652 52.381 24.49 0.00 46.30 3.51
2524 7730 1.429930 TGTGTAAGGCCTTCTGGACA 58.570 50.000 24.49 18.19 46.30 4.02
2525 7731 2.152016 GTTGTGTAAGGCCTTCTGGAC 58.848 52.381 24.49 15.48 43.41 4.02
2526 7732 1.771854 TGTTGTGTAAGGCCTTCTGGA 59.228 47.619 24.49 0.02 34.57 3.86
2527 7733 2.270352 TGTTGTGTAAGGCCTTCTGG 57.730 50.000 24.49 0.00 0.00 3.86
2528 7734 2.948979 TGTTGTTGTGTAAGGCCTTCTG 59.051 45.455 24.49 0.00 0.00 3.02
2529 7735 3.290948 TGTTGTTGTGTAAGGCCTTCT 57.709 42.857 24.49 0.27 0.00 2.85
2530 7736 3.305335 CCATGTTGTTGTGTAAGGCCTTC 60.305 47.826 24.49 14.34 0.00 3.46
2531 7737 2.627699 CCATGTTGTTGTGTAAGGCCTT 59.372 45.455 24.18 24.18 0.00 4.35
2532 7738 2.158534 TCCATGTTGTTGTGTAAGGCCT 60.159 45.455 0.00 0.00 0.00 5.19
2533 7739 2.235016 TCCATGTTGTTGTGTAAGGCC 58.765 47.619 0.00 0.00 0.00 5.19
2534 7740 4.519540 AATCCATGTTGTTGTGTAAGGC 57.480 40.909 0.00 0.00 0.00 4.35
2535 7741 5.010516 TGGAAATCCATGTTGTTGTGTAAGG 59.989 40.000 0.00 0.00 42.01 2.69
2536 7742 6.083098 TGGAAATCCATGTTGTTGTGTAAG 57.917 37.500 0.00 0.00 42.01 2.34
2550 7756 1.281867 AGATCGGCAAGTGGAAATCCA 59.718 47.619 0.00 0.00 45.30 3.41
2551 7757 1.943340 GAGATCGGCAAGTGGAAATCC 59.057 52.381 0.00 0.00 0.00 3.01
2552 7758 1.943340 GGAGATCGGCAAGTGGAAATC 59.057 52.381 0.00 0.00 0.00 2.17
2553 7759 1.408822 GGGAGATCGGCAAGTGGAAAT 60.409 52.381 0.00 0.00 0.00 2.17
2554 7760 0.035439 GGGAGATCGGCAAGTGGAAA 60.035 55.000 0.00 0.00 0.00 3.13
2555 7761 1.602237 GGGAGATCGGCAAGTGGAA 59.398 57.895 0.00 0.00 0.00 3.53
2556 7762 2.367202 GGGGAGATCGGCAAGTGGA 61.367 63.158 0.00 0.00 0.00 4.02
2557 7763 2.190578 GGGGAGATCGGCAAGTGG 59.809 66.667 0.00 0.00 0.00 4.00
2558 7764 2.202932 CGGGGAGATCGGCAAGTG 60.203 66.667 0.00 0.00 0.00 3.16
2559 7765 4.162690 GCGGGGAGATCGGCAAGT 62.163 66.667 0.00 0.00 33.87 3.16
2564 7770 3.231889 CTCATGGCGGGGAGATCGG 62.232 68.421 0.00 0.00 32.87 4.18
2565 7771 2.341543 CTCATGGCGGGGAGATCG 59.658 66.667 0.00 0.00 32.87 3.69
2566 7772 1.070445 CACTCATGGCGGGGAGATC 59.930 63.158 6.84 0.00 35.17 2.75
2567 7773 2.446848 CCACTCATGGCGGGGAGAT 61.447 63.158 6.84 0.00 39.82 2.75
2568 7774 3.083349 CCACTCATGGCGGGGAGA 61.083 66.667 6.84 0.00 39.82 3.71
2569 7775 3.083349 TCCACTCATGGCGGGGAG 61.083 66.667 3.15 0.00 46.80 4.30
2570 7776 3.083349 CTCCACTCATGGCGGGGA 61.083 66.667 6.71 6.71 46.80 4.81
2571 7777 3.083349 TCTCCACTCATGGCGGGG 61.083 66.667 0.00 0.00 46.80 5.73
2572 7778 2.362369 ACTCTCCACTCATGGCGGG 61.362 63.158 0.00 0.00 46.80 6.13
2573 7779 1.153489 CACTCTCCACTCATGGCGG 60.153 63.158 0.00 0.00 46.80 6.13
2574 7780 1.812922 GCACTCTCCACTCATGGCG 60.813 63.158 0.00 0.00 46.80 5.69
2575 7781 1.812922 CGCACTCTCCACTCATGGC 60.813 63.158 0.00 0.00 46.80 4.40
2577 7783 1.073964 CAACGCACTCTCCACTCATG 58.926 55.000 0.00 0.00 0.00 3.07
2578 7784 0.969149 TCAACGCACTCTCCACTCAT 59.031 50.000 0.00 0.00 0.00 2.90
2579 7785 0.969149 ATCAACGCACTCTCCACTCA 59.031 50.000 0.00 0.00 0.00 3.41
2580 7786 1.203523 AGATCAACGCACTCTCCACTC 59.796 52.381 0.00 0.00 0.00 3.51
2581 7787 1.261480 AGATCAACGCACTCTCCACT 58.739 50.000 0.00 0.00 0.00 4.00
2582 7788 2.164624 ACTAGATCAACGCACTCTCCAC 59.835 50.000 0.00 0.00 0.00 4.02
2583 7789 2.447443 ACTAGATCAACGCACTCTCCA 58.553 47.619 0.00 0.00 0.00 3.86
2584 7790 3.512033 AACTAGATCAACGCACTCTCC 57.488 47.619 0.00 0.00 0.00 3.71
2585 7791 3.061429 GCAAACTAGATCAACGCACTCTC 59.939 47.826 0.00 0.00 0.00 3.20
2586 7792 2.996621 GCAAACTAGATCAACGCACTCT 59.003 45.455 0.00 0.00 0.00 3.24
2587 7793 2.996621 AGCAAACTAGATCAACGCACTC 59.003 45.455 0.00 0.00 0.00 3.51
2588 7794 3.045601 AGCAAACTAGATCAACGCACT 57.954 42.857 0.00 0.00 0.00 4.40
2589 7795 3.813529 AAGCAAACTAGATCAACGCAC 57.186 42.857 0.00 0.00 0.00 5.34
2590 7796 3.058293 CCAAAGCAAACTAGATCAACGCA 60.058 43.478 0.00 0.00 0.00 5.24
2591 7797 3.492313 CCAAAGCAAACTAGATCAACGC 58.508 45.455 0.00 0.00 0.00 4.84
2592 7798 3.492313 GCCAAAGCAAACTAGATCAACG 58.508 45.455 0.00 0.00 39.53 4.10
2593 7799 3.058224 ACGCCAAAGCAAACTAGATCAAC 60.058 43.478 0.00 0.00 39.83 3.18
2594 7800 3.146066 ACGCCAAAGCAAACTAGATCAA 58.854 40.909 0.00 0.00 39.83 2.57
2595 7801 2.778299 ACGCCAAAGCAAACTAGATCA 58.222 42.857 0.00 0.00 39.83 2.92
2596 7802 3.831715 AACGCCAAAGCAAACTAGATC 57.168 42.857 0.00 0.00 39.83 2.75
2597 7803 4.584327 AAAACGCCAAAGCAAACTAGAT 57.416 36.364 0.00 0.00 39.83 1.98
2598 7804 4.109050 CAAAAACGCCAAAGCAAACTAGA 58.891 39.130 0.00 0.00 39.83 2.43
2599 7805 3.862845 ACAAAAACGCCAAAGCAAACTAG 59.137 39.130 0.00 0.00 39.83 2.57
2600 7806 3.851098 ACAAAAACGCCAAAGCAAACTA 58.149 36.364 0.00 0.00 39.83 2.24
2601 7807 2.670905 GACAAAAACGCCAAAGCAAACT 59.329 40.909 0.00 0.00 39.83 2.66
2602 7808 2.533954 CGACAAAAACGCCAAAGCAAAC 60.534 45.455 0.00 0.00 39.83 2.93
2603 7809 1.656095 CGACAAAAACGCCAAAGCAAA 59.344 42.857 0.00 0.00 39.83 3.68
2604 7810 1.135373 TCGACAAAAACGCCAAAGCAA 60.135 42.857 0.00 0.00 39.83 3.91
2605 7811 0.452184 TCGACAAAAACGCCAAAGCA 59.548 45.000 0.00 0.00 39.83 3.91
2606 7812 1.120437 CTCGACAAAAACGCCAAAGC 58.880 50.000 0.00 0.00 0.00 3.51
2607 7813 1.120437 GCTCGACAAAAACGCCAAAG 58.880 50.000 0.00 0.00 0.00 2.77
2608 7814 0.736053 AGCTCGACAAAAACGCCAAA 59.264 45.000 0.00 0.00 0.00 3.28
2609 7815 0.306533 GAGCTCGACAAAAACGCCAA 59.693 50.000 0.00 0.00 0.00 4.52
2610 7816 0.531974 AGAGCTCGACAAAAACGCCA 60.532 50.000 8.37 0.00 0.00 5.69
2611 7817 1.425412 TAGAGCTCGACAAAAACGCC 58.575 50.000 8.37 0.00 0.00 5.68
2612 7818 2.159827 CCTTAGAGCTCGACAAAAACGC 60.160 50.000 8.37 0.00 0.00 4.84
2613 7819 3.057734 ACCTTAGAGCTCGACAAAAACG 58.942 45.455 8.37 0.00 0.00 3.60
2614 7820 3.808174 ACACCTTAGAGCTCGACAAAAAC 59.192 43.478 8.37 0.00 0.00 2.43
2615 7821 4.067972 ACACCTTAGAGCTCGACAAAAA 57.932 40.909 8.37 0.00 0.00 1.94
2616 7822 3.746045 ACACCTTAGAGCTCGACAAAA 57.254 42.857 8.37 0.00 0.00 2.44
2617 7823 3.650139 GAACACCTTAGAGCTCGACAAA 58.350 45.455 8.37 1.05 0.00 2.83
2618 7824 2.351447 CGAACACCTTAGAGCTCGACAA 60.351 50.000 8.37 3.25 0.00 3.18
2619 7825 1.199327 CGAACACCTTAGAGCTCGACA 59.801 52.381 8.37 0.00 0.00 4.35
2620 7826 1.467713 CCGAACACCTTAGAGCTCGAC 60.468 57.143 8.37 0.00 0.00 4.20
2621 7827 0.809385 CCGAACACCTTAGAGCTCGA 59.191 55.000 8.37 0.00 0.00 4.04
2622 7828 0.526662 ACCGAACACCTTAGAGCTCG 59.473 55.000 8.37 0.00 0.00 5.03
2623 7829 2.608268 GAACCGAACACCTTAGAGCTC 58.392 52.381 5.27 5.27 0.00 4.09
2624 7830 1.067776 CGAACCGAACACCTTAGAGCT 60.068 52.381 0.00 0.00 0.00 4.09
2625 7831 1.347320 CGAACCGAACACCTTAGAGC 58.653 55.000 0.00 0.00 0.00 4.09
2626 7832 1.271656 ACCGAACCGAACACCTTAGAG 59.728 52.381 0.00 0.00 0.00 2.43
2627 7833 1.331214 ACCGAACCGAACACCTTAGA 58.669 50.000 0.00 0.00 0.00 2.10
2628 7834 1.796459 CAACCGAACCGAACACCTTAG 59.204 52.381 0.00 0.00 0.00 2.18
2629 7835 1.540797 CCAACCGAACCGAACACCTTA 60.541 52.381 0.00 0.00 0.00 2.69
2630 7836 0.816421 CCAACCGAACCGAACACCTT 60.816 55.000 0.00 0.00 0.00 3.50
2631 7837 1.227734 CCAACCGAACCGAACACCT 60.228 57.895 0.00 0.00 0.00 4.00
2632 7838 2.255881 CCCAACCGAACCGAACACC 61.256 63.158 0.00 0.00 0.00 4.16
2633 7839 1.227615 TCCCAACCGAACCGAACAC 60.228 57.895 0.00 0.00 0.00 3.32
2634 7840 1.227615 GTCCCAACCGAACCGAACA 60.228 57.895 0.00 0.00 0.00 3.18
2635 7841 2.312436 CGTCCCAACCGAACCGAAC 61.312 63.158 0.00 0.00 0.00 3.95
2636 7842 2.029369 CGTCCCAACCGAACCGAA 59.971 61.111 0.00 0.00 0.00 4.30
2637 7843 4.668118 GCGTCCCAACCGAACCGA 62.668 66.667 0.00 0.00 0.00 4.69
2649 7855 3.984200 GAGTACACAGGCCGCGTCC 62.984 68.421 4.92 0.00 0.00 4.79
2650 7856 2.506438 GAGTACACAGGCCGCGTC 60.506 66.667 4.92 0.00 0.00 5.19
2651 7857 2.989824 AGAGTACACAGGCCGCGT 60.990 61.111 4.92 0.00 0.00 6.01
2652 7858 1.929806 TACAGAGTACACAGGCCGCG 61.930 60.000 0.00 0.00 0.00 6.46
2653 7859 0.460311 ATACAGAGTACACAGGCCGC 59.540 55.000 0.00 0.00 0.00 6.53
2654 7860 2.025155 AGATACAGAGTACACAGGCCG 58.975 52.381 0.00 0.00 0.00 6.13
2655 7861 2.761208 ACAGATACAGAGTACACAGGCC 59.239 50.000 0.00 0.00 0.00 5.19
2656 7862 3.697045 AGACAGATACAGAGTACACAGGC 59.303 47.826 0.00 0.00 0.00 4.85
2657 7863 5.650266 AGAAGACAGATACAGAGTACACAGG 59.350 44.000 0.00 0.00 0.00 4.00
2658 7864 6.751514 AGAAGACAGATACAGAGTACACAG 57.248 41.667 0.00 0.00 0.00 3.66
2659 7865 6.128254 CGAAGAAGACAGATACAGAGTACACA 60.128 42.308 0.00 0.00 0.00 3.72
2660 7866 6.252281 CGAAGAAGACAGATACAGAGTACAC 58.748 44.000 0.00 0.00 0.00 2.90
2661 7867 5.163744 GCGAAGAAGACAGATACAGAGTACA 60.164 44.000 0.00 0.00 0.00 2.90
2662 7868 5.267776 GCGAAGAAGACAGATACAGAGTAC 58.732 45.833 0.00 0.00 0.00 2.73
2663 7869 4.335874 GGCGAAGAAGACAGATACAGAGTA 59.664 45.833 0.00 0.00 0.00 2.59
2664 7870 3.129638 GGCGAAGAAGACAGATACAGAGT 59.870 47.826 0.00 0.00 0.00 3.24
2665 7871 3.129462 TGGCGAAGAAGACAGATACAGAG 59.871 47.826 0.00 0.00 0.00 3.35
2666 7872 3.089284 TGGCGAAGAAGACAGATACAGA 58.911 45.455 0.00 0.00 0.00 3.41
2667 7873 3.510388 TGGCGAAGAAGACAGATACAG 57.490 47.619 0.00 0.00 0.00 2.74
2668 7874 4.183865 CAATGGCGAAGAAGACAGATACA 58.816 43.478 0.00 0.00 29.56 2.29
2669 7875 4.184629 ACAATGGCGAAGAAGACAGATAC 58.815 43.478 0.00 0.00 29.56 2.24
2670 7876 4.471904 ACAATGGCGAAGAAGACAGATA 57.528 40.909 0.00 0.00 29.56 1.98
2671 7877 3.340814 ACAATGGCGAAGAAGACAGAT 57.659 42.857 0.00 0.00 29.56 2.90
2672 7878 2.839486 ACAATGGCGAAGAAGACAGA 57.161 45.000 0.00 0.00 29.56 3.41
2673 7879 3.558505 CAAACAATGGCGAAGAAGACAG 58.441 45.455 0.00 0.00 29.56 3.51
2674 7880 2.293122 CCAAACAATGGCGAAGAAGACA 59.707 45.455 0.00 0.00 43.80 3.41
2675 7881 2.933769 CCAAACAATGGCGAAGAAGAC 58.066 47.619 0.00 0.00 43.80 3.01
2686 7892 3.132925 CCCAAACTCAAGCCAAACAATG 58.867 45.455 0.00 0.00 0.00 2.82
2687 7893 2.485302 GCCCAAACTCAAGCCAAACAAT 60.485 45.455 0.00 0.00 0.00 2.71
2688 7894 1.134551 GCCCAAACTCAAGCCAAACAA 60.135 47.619 0.00 0.00 0.00 2.83
2689 7895 0.463620 GCCCAAACTCAAGCCAAACA 59.536 50.000 0.00 0.00 0.00 2.83
2690 7896 0.463620 TGCCCAAACTCAAGCCAAAC 59.536 50.000 0.00 0.00 0.00 2.93
2691 7897 1.138661 CTTGCCCAAACTCAAGCCAAA 59.861 47.619 0.00 0.00 34.12 3.28
2692 7898 0.752054 CTTGCCCAAACTCAAGCCAA 59.248 50.000 0.00 0.00 34.12 4.52
2693 7899 0.106268 TCTTGCCCAAACTCAAGCCA 60.106 50.000 0.00 0.00 39.47 4.75
2694 7900 0.315251 GTCTTGCCCAAACTCAAGCC 59.685 55.000 0.00 0.00 39.47 4.35
2695 7901 0.040067 CGTCTTGCCCAAACTCAAGC 60.040 55.000 0.00 0.00 39.47 4.01
2696 7902 1.532868 CTCGTCTTGCCCAAACTCAAG 59.467 52.381 0.00 0.00 40.62 3.02
2697 7903 1.134220 ACTCGTCTTGCCCAAACTCAA 60.134 47.619 0.00 0.00 0.00 3.02
2698 7904 0.468226 ACTCGTCTTGCCCAAACTCA 59.532 50.000 0.00 0.00 0.00 3.41
2699 7905 1.264288 CAACTCGTCTTGCCCAAACTC 59.736 52.381 0.00 0.00 0.00 3.01
2700 7906 1.308998 CAACTCGTCTTGCCCAAACT 58.691 50.000 0.00 0.00 0.00 2.66
2701 7907 1.021968 ACAACTCGTCTTGCCCAAAC 58.978 50.000 0.00 0.00 0.00 2.93
2702 7908 1.021202 CACAACTCGTCTTGCCCAAA 58.979 50.000 0.00 0.00 0.00 3.28
2703 7909 0.107410 ACACAACTCGTCTTGCCCAA 60.107 50.000 0.00 0.00 0.00 4.12
2704 7910 0.813610 CACACAACTCGTCTTGCCCA 60.814 55.000 0.00 0.00 0.00 5.36
2705 7911 0.814010 ACACACAACTCGTCTTGCCC 60.814 55.000 0.00 0.00 0.00 5.36
2706 7912 0.582005 GACACACAACTCGTCTTGCC 59.418 55.000 0.00 0.00 0.00 4.52
2707 7913 0.229753 CGACACACAACTCGTCTTGC 59.770 55.000 0.00 0.00 0.00 4.01
2708 7914 1.556564 ACGACACACAACTCGTCTTG 58.443 50.000 0.00 0.00 38.80 3.02
2709 7915 1.924524 CAACGACACACAACTCGTCTT 59.075 47.619 0.00 0.00 42.21 3.01
2710 7916 1.135199 ACAACGACACACAACTCGTCT 60.135 47.619 0.00 0.00 42.21 4.18
2711 7917 1.274596 ACAACGACACACAACTCGTC 58.725 50.000 0.00 0.00 42.21 4.20
2712 7918 1.392168 CAACAACGACACACAACTCGT 59.608 47.619 0.00 0.00 44.89 4.18
2713 7919 1.850515 GCAACAACGACACACAACTCG 60.851 52.381 0.00 0.00 35.96 4.18
2714 7920 1.531058 GGCAACAACGACACACAACTC 60.531 52.381 0.00 0.00 0.00 3.01
2715 7921 0.450184 GGCAACAACGACACACAACT 59.550 50.000 0.00 0.00 0.00 3.16
2716 7922 0.450184 AGGCAACAACGACACACAAC 59.550 50.000 0.00 0.00 41.41 3.32
2717 7923 1.135546 CAAGGCAACAACGACACACAA 60.136 47.619 0.00 0.00 41.41 3.33
2718 7924 0.449786 CAAGGCAACAACGACACACA 59.550 50.000 0.00 0.00 41.41 3.72
2719 7925 0.248458 CCAAGGCAACAACGACACAC 60.248 55.000 0.00 0.00 41.41 3.82
2720 7926 0.678366 ACCAAGGCAACAACGACACA 60.678 50.000 0.00 0.00 41.41 3.72
2721 7927 0.248458 CACCAAGGCAACAACGACAC 60.248 55.000 0.00 0.00 41.41 3.67
2722 7928 1.380403 CCACCAAGGCAACAACGACA 61.380 55.000 0.00 0.00 41.41 4.35
2723 7929 1.098712 TCCACCAAGGCAACAACGAC 61.099 55.000 0.00 0.00 41.41 4.34
2724 7930 0.179004 ATCCACCAAGGCAACAACGA 60.179 50.000 0.00 0.00 41.41 3.85
2725 7931 0.039256 CATCCACCAAGGCAACAACG 60.039 55.000 0.00 0.00 41.41 4.10
2726 7932 1.039856 ACATCCACCAAGGCAACAAC 58.960 50.000 0.00 0.00 41.41 3.32
2727 7933 1.039068 CACATCCACCAAGGCAACAA 58.961 50.000 0.00 0.00 41.41 2.83
2728 7934 0.827089 CCACATCCACCAAGGCAACA 60.827 55.000 0.00 0.00 41.41 3.33
2729 7935 0.827507 ACCACATCCACCAAGGCAAC 60.828 55.000 0.00 0.00 37.29 4.17
2730 7936 0.827089 CACCACATCCACCAAGGCAA 60.827 55.000 0.00 0.00 37.29 4.52
2731 7937 1.228521 CACCACATCCACCAAGGCA 60.229 57.895 0.00 0.00 37.29 4.75
2732 7938 0.827507 AACACCACATCCACCAAGGC 60.828 55.000 0.00 0.00 37.29 4.35
2733 7939 2.577606 TAACACCACATCCACCAAGG 57.422 50.000 0.00 0.00 39.47 3.61


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.