Multiple sequence alignment - TraesCS5A01G240700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G240700 chr5A 100.000 2522 0 0 1 2522 456971646 456974167 0.000000e+00 4658.0
1 TraesCS5A01G240700 chr5D 88.043 1104 57 30 862 1932 354834181 354835242 0.000000e+00 1238.0
2 TraesCS5A01G240700 chr5D 91.832 404 23 4 350 748 354832724 354833122 2.830000e-154 555.0
3 TraesCS5A01G240700 chr5D 81.132 424 58 11 240 650 548533405 548532991 1.130000e-83 320.0
4 TraesCS5A01G240700 chr5D 93.082 159 11 0 1938 2096 354835306 354835464 1.510000e-57 233.0
5 TraesCS5A01G240700 chr5D 94.262 122 3 3 2002 2123 354835475 354835592 1.540000e-42 183.0
6 TraesCS5A01G240700 chr5D 94.828 58 3 0 2389 2446 354836142 354836199 9.610000e-15 91.6
7 TraesCS5A01G240700 chr5D 96.970 33 1 0 777 809 380498511 380498543 3.500000e-04 56.5
8 TraesCS5A01G240700 chr5D 92.105 38 1 2 776 812 386674122 386674086 5.000000e-03 52.8
9 TraesCS5A01G240700 chr5B 92.424 660 50 0 866 1525 419617464 419618123 0.000000e+00 942.0
10 TraesCS5A01G240700 chr5B 93.836 438 21 5 315 748 419615553 419615988 0.000000e+00 654.0
11 TraesCS5A01G240700 chr5B 92.287 363 18 6 1530 1891 419618160 419618513 8.050000e-140 507.0
12 TraesCS5A01G240700 chr5B 82.295 305 26 9 1938 2242 419618890 419619166 3.240000e-59 239.0
13 TraesCS5A01G240700 chr5B 86.755 151 14 5 485 630 687111106 687110957 2.010000e-36 163.0
14 TraesCS5A01G240700 chr7A 93.878 49 2 1 2242 2290 39061352 39061399 3.480000e-09 73.1
15 TraesCS5A01G240700 chr3B 92.308 52 3 1 2239 2290 330781534 330781584 3.480000e-09 73.1
16 TraesCS5A01G240700 chr1A 91.837 49 3 1 2242 2290 121360136 121360089 1.620000e-07 67.6
17 TraesCS5A01G240700 chr1A 94.444 36 2 0 777 812 432229216 432229181 3.500000e-04 56.5
18 TraesCS5A01G240700 chr1B 94.872 39 2 0 765 803 150801987 150801949 7.530000e-06 62.1
19 TraesCS5A01G240700 chr4D 97.059 34 1 0 770 803 507349260 507349227 9.740000e-05 58.4
20 TraesCS5A01G240700 chr2D 96.970 33 1 0 771 803 585063294 585063262 3.500000e-04 56.5
21 TraesCS5A01G240700 chr7D 92.105 38 1 2 776 812 105999775 105999739 5.000000e-03 52.8
22 TraesCS5A01G240700 chr7D 100.000 28 0 0 776 803 534541746 534541773 5.000000e-03 52.8
23 TraesCS5A01G240700 chr6D 91.892 37 3 0 776 812 394880190 394880154 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G240700 chr5A 456971646 456974167 2521 False 4658.00 4658 100.0000 1 2522 1 chr5A.!!$F1 2521
1 TraesCS5A01G240700 chr5D 354832724 354836199 3475 False 460.12 1238 92.4094 350 2446 5 chr5D.!!$F2 2096
2 TraesCS5A01G240700 chr5B 419615553 419619166 3613 False 585.50 942 90.2105 315 2242 4 chr5B.!!$F1 1927

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
276 277 0.107800 GTCCCTTCTCTTTACCGGCC 60.108 60.0 0.00 0.0 0.00 6.13 F
552 555 0.249398 CGGGTTTCCCTCGAGTGAAT 59.751 55.0 11.23 0.0 42.67 2.57 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1322 2769 0.041839 CAATAGCTCAACGCCATCGC 60.042 55.0 0.00 0.0 40.39 4.58 R
2463 4827 0.179108 GCGCGGGTAGAGATGTCTTT 60.179 55.0 8.83 0.0 33.84 2.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
21 22 4.679373 ATCTACAACCAGCTGTATCCTG 57.321 45.455 13.81 4.72 31.50 3.86
30 31 4.137543 CCAGCTGTATCCTGGTATTTTCC 58.862 47.826 13.81 0.00 43.86 3.13
31 32 4.385199 CCAGCTGTATCCTGGTATTTTCCA 60.385 45.833 13.81 0.00 43.86 3.53
32 33 4.576463 CAGCTGTATCCTGGTATTTTCCAC 59.424 45.833 5.25 0.00 33.55 4.02
33 34 4.227300 AGCTGTATCCTGGTATTTTCCACA 59.773 41.667 0.00 0.00 33.55 4.17
34 35 5.103940 AGCTGTATCCTGGTATTTTCCACAT 60.104 40.000 0.00 0.00 33.55 3.21
35 36 5.239525 GCTGTATCCTGGTATTTTCCACATC 59.760 44.000 0.00 0.00 33.55 3.06
36 37 5.364778 TGTATCCTGGTATTTTCCACATCG 58.635 41.667 0.00 0.00 33.55 3.84
37 38 3.992943 TCCTGGTATTTTCCACATCGT 57.007 42.857 0.00 0.00 33.55 3.73
38 39 4.295141 TCCTGGTATTTTCCACATCGTT 57.705 40.909 0.00 0.00 33.55 3.85
39 40 4.258543 TCCTGGTATTTTCCACATCGTTC 58.741 43.478 0.00 0.00 33.55 3.95
40 41 4.019681 TCCTGGTATTTTCCACATCGTTCT 60.020 41.667 0.00 0.00 33.55 3.01
41 42 5.188163 TCCTGGTATTTTCCACATCGTTCTA 59.812 40.000 0.00 0.00 33.55 2.10
42 43 6.055588 CCTGGTATTTTCCACATCGTTCTAT 58.944 40.000 0.00 0.00 33.55 1.98
43 44 6.017934 CCTGGTATTTTCCACATCGTTCTATG 60.018 42.308 0.00 0.00 33.55 2.23
44 45 6.411376 TGGTATTTTCCACATCGTTCTATGT 58.589 36.000 0.00 0.00 40.75 2.29
45 46 6.882140 TGGTATTTTCCACATCGTTCTATGTT 59.118 34.615 0.00 0.00 38.01 2.71
46 47 7.065324 TGGTATTTTCCACATCGTTCTATGTTC 59.935 37.037 0.00 0.00 38.01 3.18
47 48 5.873179 TTTTCCACATCGTTCTATGTTCC 57.127 39.130 0.00 0.00 38.01 3.62
48 49 4.819105 TTCCACATCGTTCTATGTTCCT 57.181 40.909 0.00 0.00 38.01 3.36
49 50 4.819105 TCCACATCGTTCTATGTTCCTT 57.181 40.909 0.00 0.00 38.01 3.36
50 51 4.755411 TCCACATCGTTCTATGTTCCTTC 58.245 43.478 0.00 0.00 38.01 3.46
51 52 4.466370 TCCACATCGTTCTATGTTCCTTCT 59.534 41.667 0.00 0.00 38.01 2.85
52 53 5.046591 TCCACATCGTTCTATGTTCCTTCTT 60.047 40.000 0.00 0.00 38.01 2.52
53 54 5.643777 CCACATCGTTCTATGTTCCTTCTTT 59.356 40.000 0.00 0.00 38.01 2.52
54 55 6.149474 CCACATCGTTCTATGTTCCTTCTTTT 59.851 38.462 0.00 0.00 38.01 2.27
55 56 7.308589 CCACATCGTTCTATGTTCCTTCTTTTT 60.309 37.037 0.00 0.00 38.01 1.94
81 82 8.964476 TTTTTAATTGTTTGGATTGCTTACCA 57.036 26.923 0.00 0.00 0.00 3.25
82 83 9.566432 TTTTTAATTGTTTGGATTGCTTACCAT 57.434 25.926 0.00 0.00 36.02 3.55
83 84 8.545229 TTTAATTGTTTGGATTGCTTACCATG 57.455 30.769 0.00 0.00 36.02 3.66
84 85 5.743636 ATTGTTTGGATTGCTTACCATGT 57.256 34.783 0.00 0.00 36.02 3.21
85 86 4.517952 TGTTTGGATTGCTTACCATGTG 57.482 40.909 0.00 0.00 36.02 3.21
86 87 3.894427 TGTTTGGATTGCTTACCATGTGT 59.106 39.130 0.00 0.00 36.02 3.72
87 88 4.236935 GTTTGGATTGCTTACCATGTGTG 58.763 43.478 0.00 0.00 36.02 3.82
88 89 3.153369 TGGATTGCTTACCATGTGTGT 57.847 42.857 0.00 0.00 0.00 3.72
89 90 2.819019 TGGATTGCTTACCATGTGTGTG 59.181 45.455 0.00 0.00 0.00 3.82
90 91 3.081061 GGATTGCTTACCATGTGTGTGA 58.919 45.455 0.00 0.00 0.00 3.58
91 92 3.119849 GGATTGCTTACCATGTGTGTGAC 60.120 47.826 0.00 0.00 0.00 3.67
92 93 1.890876 TGCTTACCATGTGTGTGACC 58.109 50.000 0.00 0.00 0.00 4.02
93 94 1.419762 TGCTTACCATGTGTGTGACCT 59.580 47.619 0.00 0.00 0.00 3.85
94 95 1.806542 GCTTACCATGTGTGTGACCTG 59.193 52.381 0.00 0.00 0.00 4.00
95 96 2.426522 CTTACCATGTGTGTGACCTGG 58.573 52.381 0.00 0.00 44.04 4.45
96 97 2.230664 ACCATGTGTGTGACCTGGT 58.769 52.632 0.00 0.00 45.87 4.00
97 98 3.419793 CCATGTGTGTGACCTGGTT 57.580 52.632 0.00 0.00 36.00 3.67
98 99 1.691196 CCATGTGTGTGACCTGGTTT 58.309 50.000 0.00 0.00 36.00 3.27
99 100 2.031120 CCATGTGTGTGACCTGGTTTT 58.969 47.619 0.00 0.00 36.00 2.43
100 101 2.034558 CCATGTGTGTGACCTGGTTTTC 59.965 50.000 0.00 0.00 36.00 2.29
101 102 2.799126 TGTGTGTGACCTGGTTTTCT 57.201 45.000 0.00 0.00 0.00 2.52
102 103 3.916359 TGTGTGTGACCTGGTTTTCTA 57.084 42.857 0.00 0.00 0.00 2.10
103 104 4.431416 TGTGTGTGACCTGGTTTTCTAT 57.569 40.909 0.00 0.00 0.00 1.98
104 105 4.787551 TGTGTGTGACCTGGTTTTCTATT 58.212 39.130 0.00 0.00 0.00 1.73
105 106 4.819630 TGTGTGTGACCTGGTTTTCTATTC 59.180 41.667 0.00 0.00 0.00 1.75
106 107 4.215613 GTGTGTGACCTGGTTTTCTATTCC 59.784 45.833 0.00 0.00 0.00 3.01
107 108 3.756963 GTGTGACCTGGTTTTCTATTCCC 59.243 47.826 0.00 0.00 0.00 3.97
108 109 3.245122 TGTGACCTGGTTTTCTATTCCCC 60.245 47.826 0.00 0.00 0.00 4.81
109 110 3.010250 GTGACCTGGTTTTCTATTCCCCT 59.990 47.826 0.00 0.00 0.00 4.79
110 111 3.660669 TGACCTGGTTTTCTATTCCCCTT 59.339 43.478 0.00 0.00 0.00 3.95
111 112 4.263771 TGACCTGGTTTTCTATTCCCCTTC 60.264 45.833 0.00 0.00 0.00 3.46
112 113 3.923425 ACCTGGTTTTCTATTCCCCTTCT 59.077 43.478 0.00 0.00 0.00 2.85
113 114 4.018324 ACCTGGTTTTCTATTCCCCTTCTC 60.018 45.833 0.00 0.00 0.00 2.87
114 115 4.018415 CCTGGTTTTCTATTCCCCTTCTCA 60.018 45.833 0.00 0.00 0.00 3.27
115 116 5.516591 CCTGGTTTTCTATTCCCCTTCTCAA 60.517 44.000 0.00 0.00 0.00 3.02
116 117 5.321927 TGGTTTTCTATTCCCCTTCTCAAC 58.678 41.667 0.00 0.00 0.00 3.18
117 118 4.705507 GGTTTTCTATTCCCCTTCTCAACC 59.294 45.833 0.00 0.00 0.00 3.77
118 119 5.516768 GGTTTTCTATTCCCCTTCTCAACCT 60.517 44.000 0.00 0.00 0.00 3.50
119 120 5.437191 TTTCTATTCCCCTTCTCAACCTC 57.563 43.478 0.00 0.00 0.00 3.85
120 121 4.074799 TCTATTCCCCTTCTCAACCTCA 57.925 45.455 0.00 0.00 0.00 3.86
121 122 3.775316 TCTATTCCCCTTCTCAACCTCAC 59.225 47.826 0.00 0.00 0.00 3.51
122 123 1.064825 TTCCCCTTCTCAACCTCACC 58.935 55.000 0.00 0.00 0.00 4.02
123 124 0.840722 TCCCCTTCTCAACCTCACCC 60.841 60.000 0.00 0.00 0.00 4.61
124 125 0.842467 CCCCTTCTCAACCTCACCCT 60.842 60.000 0.00 0.00 0.00 4.34
125 126 0.326264 CCCTTCTCAACCTCACCCTG 59.674 60.000 0.00 0.00 0.00 4.45
126 127 0.326264 CCTTCTCAACCTCACCCTGG 59.674 60.000 0.00 0.00 0.00 4.45
127 128 1.352083 CTTCTCAACCTCACCCTGGA 58.648 55.000 0.00 0.00 0.00 3.86
128 129 1.277557 CTTCTCAACCTCACCCTGGAG 59.722 57.143 0.00 0.00 34.62 3.86
129 130 1.194781 TCTCAACCTCACCCTGGAGC 61.195 60.000 0.00 0.00 33.47 4.70
130 131 2.190488 CTCAACCTCACCCTGGAGCC 62.190 65.000 0.00 0.00 33.47 4.70
131 132 2.208349 AACCTCACCCTGGAGCCT 59.792 61.111 0.00 0.00 33.47 4.58
132 133 1.920835 AACCTCACCCTGGAGCCTC 60.921 63.158 0.00 0.00 33.47 4.70
133 134 2.284921 CCTCACCCTGGAGCCTCA 60.285 66.667 0.00 0.00 33.47 3.86
134 135 2.664081 CCTCACCCTGGAGCCTCAC 61.664 68.421 0.00 0.00 33.47 3.51
135 136 2.997315 TCACCCTGGAGCCTCACG 60.997 66.667 0.00 0.00 0.00 4.35
136 137 4.087892 CACCCTGGAGCCTCACGG 62.088 72.222 0.00 0.00 0.00 4.94
148 149 2.880963 CCTCACGGCCAAAAAGAAAA 57.119 45.000 2.24 0.00 0.00 2.29
149 150 3.172229 CCTCACGGCCAAAAAGAAAAA 57.828 42.857 2.24 0.00 0.00 1.94
174 175 2.408022 GACTCATCGTCGACCCGG 59.592 66.667 10.58 0.00 32.04 5.73
175 176 3.122250 GACTCATCGTCGACCCGGG 62.122 68.421 22.25 22.25 32.04 5.73
176 177 4.570663 CTCATCGTCGACCCGGGC 62.571 72.222 24.08 13.09 0.00 6.13
178 179 4.221422 CATCGTCGACCCGGGCAT 62.221 66.667 24.08 0.00 0.00 4.40
179 180 2.520020 ATCGTCGACCCGGGCATA 60.520 61.111 24.08 1.86 0.00 3.14
180 181 2.853290 ATCGTCGACCCGGGCATAC 61.853 63.158 24.08 15.14 0.00 2.39
181 182 4.580551 CGTCGACCCGGGCATACC 62.581 72.222 24.08 3.78 0.00 2.73
191 192 4.256180 GGCATACCCGAGCCCTGG 62.256 72.222 0.00 0.00 45.18 4.45
192 193 3.480133 GCATACCCGAGCCCTGGT 61.480 66.667 0.00 0.00 38.69 4.00
193 194 2.138179 GCATACCCGAGCCCTGGTA 61.138 63.158 0.00 0.00 41.17 3.25
194 195 2.050269 CATACCCGAGCCCTGGTAG 58.950 63.158 0.00 0.00 40.30 3.18
195 196 1.152312 ATACCCGAGCCCTGGTAGG 60.152 63.158 0.00 0.00 40.30 3.18
196 197 1.957822 ATACCCGAGCCCTGGTAGGT 61.958 60.000 0.00 0.00 40.30 3.08
197 198 2.172229 TACCCGAGCCCTGGTAGGTT 62.172 60.000 0.00 0.00 36.04 3.50
198 199 2.298661 CCCGAGCCCTGGTAGGTTT 61.299 63.158 0.00 0.00 31.93 3.27
199 200 1.078426 CCGAGCCCTGGTAGGTTTG 60.078 63.158 0.00 0.00 31.93 2.93
200 201 1.078426 CGAGCCCTGGTAGGTTTGG 60.078 63.158 0.00 0.00 31.93 3.28
201 202 1.378646 GAGCCCTGGTAGGTTTGGC 60.379 63.158 0.00 0.00 42.48 4.52
202 203 2.763902 GCCCTGGTAGGTTTGGCT 59.236 61.111 0.00 0.00 39.05 4.75
203 204 1.378646 GCCCTGGTAGGTTTGGCTC 60.379 63.158 0.00 0.00 39.05 4.70
204 205 1.853250 GCCCTGGTAGGTTTGGCTCT 61.853 60.000 0.00 0.00 39.05 4.09
205 206 0.253327 CCCTGGTAGGTTTGGCTCTC 59.747 60.000 0.00 0.00 31.93 3.20
206 207 0.253327 CCTGGTAGGTTTGGCTCTCC 59.747 60.000 0.00 0.00 0.00 3.71
207 208 1.280457 CTGGTAGGTTTGGCTCTCCT 58.720 55.000 0.00 0.00 35.60 3.69
208 209 1.208293 CTGGTAGGTTTGGCTCTCCTC 59.792 57.143 0.00 0.00 33.34 3.71
209 210 0.542333 GGTAGGTTTGGCTCTCCTCC 59.458 60.000 0.00 0.00 33.34 4.30
210 211 0.542333 GTAGGTTTGGCTCTCCTCCC 59.458 60.000 0.00 0.00 33.34 4.30
211 212 0.417841 TAGGTTTGGCTCTCCTCCCT 59.582 55.000 0.00 0.00 33.34 4.20
212 213 0.912006 AGGTTTGGCTCTCCTCCCTC 60.912 60.000 0.00 0.00 0.00 4.30
213 214 1.219393 GTTTGGCTCTCCTCCCTCG 59.781 63.158 0.00 0.00 0.00 4.63
214 215 1.990060 TTTGGCTCTCCTCCCTCGG 60.990 63.158 0.00 0.00 0.00 4.63
215 216 3.984186 TTGGCTCTCCTCCCTCGGG 62.984 68.421 0.00 0.00 0.00 5.14
247 248 4.537433 GCGGCGGCTGAATCTCCT 62.537 66.667 14.15 0.00 35.83 3.69
248 249 2.587194 CGGCGGCTGAATCTCCTG 60.587 66.667 7.61 0.00 0.00 3.86
249 250 2.899339 GGCGGCTGAATCTCCTGC 60.899 66.667 0.00 0.00 0.00 4.85
250 251 2.899339 GCGGCTGAATCTCCTGCC 60.899 66.667 0.00 0.00 44.58 4.85
252 253 4.232310 GGCTGAATCTCCTGCCAC 57.768 61.111 0.00 0.00 46.45 5.01
253 254 1.452833 GGCTGAATCTCCTGCCACC 60.453 63.158 0.00 0.00 46.45 4.61
254 255 1.817099 GCTGAATCTCCTGCCACCG 60.817 63.158 0.00 0.00 0.00 4.94
255 256 1.153289 CTGAATCTCCTGCCACCGG 60.153 63.158 0.00 0.00 0.00 5.28
256 257 1.612146 TGAATCTCCTGCCACCGGA 60.612 57.895 9.46 0.00 0.00 5.14
258 259 1.613630 AATCTCCTGCCACCGGAGT 60.614 57.895 9.46 0.00 46.49 3.85
259 260 1.617947 AATCTCCTGCCACCGGAGTC 61.618 60.000 9.46 0.00 46.49 3.36
260 261 3.775654 CTCCTGCCACCGGAGTCC 61.776 72.222 9.46 0.00 42.47 3.85
263 264 3.322466 CTGCCACCGGAGTCCCTT 61.322 66.667 9.46 0.00 0.00 3.95
264 265 3.316573 CTGCCACCGGAGTCCCTTC 62.317 68.421 9.46 0.00 0.00 3.46
265 266 3.003763 GCCACCGGAGTCCCTTCT 61.004 66.667 9.46 0.00 0.00 2.85
266 267 3.020237 GCCACCGGAGTCCCTTCTC 62.020 68.421 9.46 0.00 0.00 2.87
267 268 1.305381 CCACCGGAGTCCCTTCTCT 60.305 63.158 9.46 0.00 35.11 3.10
268 269 0.905337 CCACCGGAGTCCCTTCTCTT 60.905 60.000 9.46 0.00 35.11 2.85
269 270 0.977395 CACCGGAGTCCCTTCTCTTT 59.023 55.000 9.46 0.00 35.11 2.52
270 271 2.176889 CACCGGAGTCCCTTCTCTTTA 58.823 52.381 9.46 0.00 35.11 1.85
271 272 2.094130 CACCGGAGTCCCTTCTCTTTAC 60.094 54.545 9.46 0.00 35.11 2.01
272 273 1.481363 CCGGAGTCCCTTCTCTTTACC 59.519 57.143 2.80 0.00 35.11 2.85
273 274 1.134560 CGGAGTCCCTTCTCTTTACCG 59.865 57.143 2.80 0.00 35.11 4.02
274 275 1.481363 GGAGTCCCTTCTCTTTACCGG 59.519 57.143 0.00 0.00 35.11 5.28
275 276 0.903236 AGTCCCTTCTCTTTACCGGC 59.097 55.000 0.00 0.00 0.00 6.13
276 277 0.107800 GTCCCTTCTCTTTACCGGCC 60.108 60.000 0.00 0.00 0.00 6.13
277 278 1.153429 CCCTTCTCTTTACCGGCCG 60.153 63.158 21.04 21.04 0.00 6.13
278 279 1.153429 CCTTCTCTTTACCGGCCGG 60.153 63.158 42.17 42.17 42.03 6.13
297 298 2.597903 GGATTGGCTCCACCCTCC 59.402 66.667 0.00 0.00 44.26 4.30
298 299 2.597903 GATTGGCTCCACCCTCCC 59.402 66.667 0.00 0.00 37.83 4.30
299 300 2.003548 GATTGGCTCCACCCTCCCT 61.004 63.158 0.00 0.00 37.83 4.20
300 301 1.988982 GATTGGCTCCACCCTCCCTC 61.989 65.000 0.00 0.00 37.83 4.30
301 302 4.741239 TGGCTCCACCCTCCCTCC 62.741 72.222 0.00 0.00 37.83 4.30
303 304 4.741239 GCTCCACCCTCCCTCCCA 62.741 72.222 0.00 0.00 0.00 4.37
304 305 2.124996 CTCCACCCTCCCTCCCAA 59.875 66.667 0.00 0.00 0.00 4.12
305 306 1.541368 CTCCACCCTCCCTCCCAAA 60.541 63.158 0.00 0.00 0.00 3.28
306 307 0.921256 CTCCACCCTCCCTCCCAAAT 60.921 60.000 0.00 0.00 0.00 2.32
307 308 0.919289 TCCACCCTCCCTCCCAAATC 60.919 60.000 0.00 0.00 0.00 2.17
308 309 1.615262 CACCCTCCCTCCCAAATCC 59.385 63.158 0.00 0.00 0.00 3.01
309 310 1.622752 ACCCTCCCTCCCAAATCCC 60.623 63.158 0.00 0.00 0.00 3.85
310 311 2.395353 CCCTCCCTCCCAAATCCCC 61.395 68.421 0.00 0.00 0.00 4.81
311 312 2.395353 CCTCCCTCCCAAATCCCCC 61.395 68.421 0.00 0.00 0.00 5.40
312 313 2.694616 TCCCTCCCAAATCCCCCG 60.695 66.667 0.00 0.00 0.00 5.73
313 314 4.522975 CCCTCCCAAATCCCCCGC 62.523 72.222 0.00 0.00 0.00 6.13
418 419 2.365105 CGCCCCCTACCTCCTTCA 60.365 66.667 0.00 0.00 0.00 3.02
552 555 0.249398 CGGGTTTCCCTCGAGTGAAT 59.751 55.000 11.23 0.00 42.67 2.57
556 559 3.057526 GGGTTTCCCTCGAGTGAATTTTG 60.058 47.826 11.23 0.00 41.34 2.44
665 674 7.596248 GCTCAAAATTTCATCTGAAGCTTGTTA 59.404 33.333 2.10 0.00 35.21 2.41
666 675 9.635520 CTCAAAATTTCATCTGAAGCTTGTTAT 57.364 29.630 2.10 0.00 35.21 1.89
748 757 5.566230 GCAGTGCCTTTTCTTTCTTGATGAT 60.566 40.000 2.85 0.00 0.00 2.45
749 758 5.862323 CAGTGCCTTTTCTTTCTTGATGATG 59.138 40.000 0.00 0.00 0.00 3.07
751 760 6.266103 AGTGCCTTTTCTTTCTTGATGATGAA 59.734 34.615 0.00 0.00 0.00 2.57
753 762 7.439056 GTGCCTTTTCTTTCTTGATGATGAAAA 59.561 33.333 0.00 0.00 36.32 2.29
768 2190 7.611079 TGATGATGAAAATCTGTGTTACATGGA 59.389 33.333 0.00 0.00 0.00 3.41
769 2191 7.943079 TGATGAAAATCTGTGTTACATGGAT 57.057 32.000 0.00 0.00 0.00 3.41
774 2196 7.336679 TGAAAATCTGTGTTACATGGATGGTAG 59.663 37.037 0.00 0.00 0.00 3.18
778 2200 5.362717 TCTGTGTTACATGGATGGTAGGTAG 59.637 44.000 0.00 0.00 0.00 3.18
788 2210 3.500108 GGATGGTAGGTAGTACTCCCTCC 60.500 56.522 10.79 12.15 32.08 4.30
799 2221 1.961133 ACTCCCTCCGTCCCAAAATA 58.039 50.000 0.00 0.00 0.00 1.40
800 2222 2.271777 ACTCCCTCCGTCCCAAAATAA 58.728 47.619 0.00 0.00 0.00 1.40
801 2223 2.238898 ACTCCCTCCGTCCCAAAATAAG 59.761 50.000 0.00 0.00 0.00 1.73
802 2224 2.238898 CTCCCTCCGTCCCAAAATAAGT 59.761 50.000 0.00 0.00 0.00 2.24
804 2226 3.074836 TCCCTCCGTCCCAAAATAAGTTT 59.925 43.478 0.00 0.00 0.00 2.66
805 2227 3.830178 CCCTCCGTCCCAAAATAAGTTTT 59.170 43.478 0.00 0.00 38.03 2.43
808 2230 6.349860 CCCTCCGTCCCAAAATAAGTTTTTAG 60.350 42.308 0.00 0.00 35.41 1.85
810 2232 7.205737 TCCGTCCCAAAATAAGTTTTTAGAC 57.794 36.000 0.00 0.00 35.41 2.59
812 2234 8.156165 TCCGTCCCAAAATAAGTTTTTAGACTA 58.844 33.333 9.35 0.00 36.03 2.59
813 2235 8.953313 CCGTCCCAAAATAAGTTTTTAGACTAT 58.047 33.333 9.35 0.00 36.03 2.12
814 2236 9.983804 CGTCCCAAAATAAGTTTTTAGACTATC 57.016 33.333 9.35 0.00 36.03 2.08
822 2244 5.360649 AGTTTTTAGACTATCAGGAGGGC 57.639 43.478 0.00 0.00 0.00 5.19
823 2245 4.783227 AGTTTTTAGACTATCAGGAGGGCA 59.217 41.667 0.00 0.00 0.00 5.36
826 2248 5.772393 TTTAGACTATCAGGAGGGCAAAA 57.228 39.130 0.00 0.00 0.00 2.44
829 2251 2.678336 GACTATCAGGAGGGCAAAAACG 59.322 50.000 0.00 0.00 0.00 3.60
850 2272 3.059287 CCCCCGGTTCCATTTTTCA 57.941 52.632 0.00 0.00 0.00 2.69
851 2273 0.894835 CCCCCGGTTCCATTTTTCAG 59.105 55.000 0.00 0.00 0.00 3.02
852 2274 1.627864 CCCCGGTTCCATTTTTCAGT 58.372 50.000 0.00 0.00 0.00 3.41
854 2276 1.544246 CCCGGTTCCATTTTTCAGTCC 59.456 52.381 0.00 0.00 0.00 3.85
855 2277 1.544246 CCGGTTCCATTTTTCAGTCCC 59.456 52.381 0.00 0.00 0.00 4.46
856 2278 2.235016 CGGTTCCATTTTTCAGTCCCA 58.765 47.619 0.00 0.00 0.00 4.37
858 2280 3.068873 CGGTTCCATTTTTCAGTCCCAAA 59.931 43.478 0.00 0.00 0.00 3.28
859 2281 4.631131 GGTTCCATTTTTCAGTCCCAAAG 58.369 43.478 0.00 0.00 0.00 2.77
860 2282 4.058124 GTTCCATTTTTCAGTCCCAAAGC 58.942 43.478 0.00 0.00 0.00 3.51
896 2343 5.966335 GCTTTGTCTAGCAATTGTTTTGTG 58.034 37.500 7.40 0.00 40.89 3.33
910 2357 7.581213 ATTGTTTTGTGATGAAGTGGTTAGA 57.419 32.000 0.00 0.00 0.00 2.10
916 2363 7.724305 TTGTGATGAAGTGGTTAGAGTTAAC 57.276 36.000 0.00 0.00 38.74 2.01
923 2370 5.228945 AGTGGTTAGAGTTAACTGCATGT 57.771 39.130 14.14 0.00 39.30 3.21
1080 2527 5.159925 CCTGAAGATGCTACATATGACGAG 58.840 45.833 10.38 4.81 0.00 4.18
1146 2593 1.806461 AAGCACAGGCGACTCTCGAA 61.806 55.000 0.00 0.00 43.74 3.71
1245 2692 5.961272 TGTCGAGCAGAGTATGATAAACAA 58.039 37.500 0.00 0.00 0.00 2.83
1248 2695 7.148137 TGTCGAGCAGAGTATGATAAACAACTA 60.148 37.037 0.00 0.00 0.00 2.24
1254 2701 8.269424 GCAGAGTATGATAAACAACTACAATCG 58.731 37.037 0.00 0.00 0.00 3.34
1322 2769 6.239396 AGGATATGATCATTGAAAGCTCTGG 58.761 40.000 14.65 0.00 0.00 3.86
1329 2776 1.308069 TTGAAAGCTCTGGCGATGGC 61.308 55.000 0.00 0.00 44.37 4.40
1332 2779 3.612247 AAGCTCTGGCGATGGCGTT 62.612 57.895 0.00 0.00 44.37 4.84
1380 2827 3.968724 GCGATTATTTTTCGATCACAGCC 59.031 43.478 0.00 0.00 38.88 4.85
1386 2833 0.320334 TTTCGATCACAGCCTGCGAA 60.320 50.000 1.53 1.53 38.94 4.70
1462 2909 4.152402 CACCTGATTCTTTACCAACGTCTG 59.848 45.833 0.00 0.00 0.00 3.51
1473 2920 2.702847 AACGTCTGTTGTTCTGGGC 58.297 52.632 0.00 0.00 36.81 5.36
1498 2945 5.592282 TGTGGCTCATGTTCTCTTAAAACAA 59.408 36.000 0.00 0.00 39.84 2.83
1504 2951 6.061441 TCATGTTCTCTTAAAACAAGGCTGA 58.939 36.000 0.00 0.00 39.84 4.26
1550 3029 7.568861 CGTTGTACTGATTTGAACACCTTCTAC 60.569 40.741 0.00 0.00 0.00 2.59
1557 3036 2.054799 TGAACACCTTCTACCCTGCTT 58.945 47.619 0.00 0.00 0.00 3.91
1605 3084 0.460284 ATAGCGTGTACTGCTGGCAC 60.460 55.000 19.32 9.41 43.85 5.01
1606 3085 1.532604 TAGCGTGTACTGCTGGCACT 61.533 55.000 19.32 0.00 43.85 4.40
1607 3086 2.671177 GCGTGTACTGCTGGCACTG 61.671 63.158 14.80 10.85 0.00 3.66
1608 3087 2.029288 CGTGTACTGCTGGCACTGG 61.029 63.158 14.80 2.04 0.00 4.00
1612 3091 0.107703 GTACTGCTGGCACTGGCATA 60.108 55.000 5.63 0.00 43.71 3.14
1613 3092 0.839277 TACTGCTGGCACTGGCATAT 59.161 50.000 5.63 0.00 43.71 1.78
1615 3094 0.666913 CTGCTGGCACTGGCATATTC 59.333 55.000 5.63 0.00 43.71 1.75
1616 3095 0.034283 TGCTGGCACTGGCATATTCA 60.034 50.000 5.63 0.02 43.71 2.57
1619 3098 1.945394 CTGGCACTGGCATATTCACTC 59.055 52.381 5.63 0.00 43.71 3.51
1620 3099 1.312815 GGCACTGGCATATTCACTCC 58.687 55.000 0.00 0.00 43.71 3.85
1621 3100 1.133976 GGCACTGGCATATTCACTCCT 60.134 52.381 0.00 0.00 43.71 3.69
1622 3101 2.216898 GCACTGGCATATTCACTCCTC 58.783 52.381 0.00 0.00 40.72 3.71
1688 3168 0.729116 CCATTGTGCTCAGCTAACCG 59.271 55.000 0.00 0.00 0.00 4.44
1733 3213 3.827876 TGGGTTGTTATCTGTACGTCTCA 59.172 43.478 0.00 0.00 0.00 3.27
1751 3231 6.148150 ACGTCTCATTCCGTTAATTTTGCTTA 59.852 34.615 0.00 0.00 32.50 3.09
1752 3232 7.148306 ACGTCTCATTCCGTTAATTTTGCTTAT 60.148 33.333 0.00 0.00 32.50 1.73
1753 3233 7.696453 CGTCTCATTCCGTTAATTTTGCTTATT 59.304 33.333 0.00 0.00 0.00 1.40
1754 3234 9.997482 GTCTCATTCCGTTAATTTTGCTTATTA 57.003 29.630 0.00 0.00 0.00 0.98
1871 3351 6.152323 ACTTGGATGATTTCTCCTGTCAATTG 59.848 38.462 0.00 0.00 33.69 2.32
1934 3414 7.700234 TGTTGTGTCTTTTGCTGTAAATTACTG 59.300 33.333 4.67 5.26 0.00 2.74
1957 3780 8.917088 ACTGCAATATATTTGGCATTACTCTTT 58.083 29.630 10.04 0.00 35.45 2.52
2101 4025 1.045407 TAACGGCAAGTCACTCACCT 58.955 50.000 0.00 0.00 0.00 4.00
2195 4559 5.639931 TGTATTTTGTTGCGTATACAGCTCA 59.360 36.000 16.71 13.47 31.73 4.26
2217 4581 1.134965 CCTGTCTCTTCACACCGATCC 60.135 57.143 0.00 0.00 0.00 3.36
2221 4585 3.007940 TGTCTCTTCACACCGATCCATTT 59.992 43.478 0.00 0.00 0.00 2.32
2231 4595 3.078837 ACCGATCCATTTGTTACCACAC 58.921 45.455 0.00 0.00 30.32 3.82
2242 4606 2.366266 TGTTACCACACGAACCTAAGCT 59.634 45.455 0.00 0.00 0.00 3.74
2243 4607 3.573538 TGTTACCACACGAACCTAAGCTA 59.426 43.478 0.00 0.00 0.00 3.32
2244 4608 4.039004 TGTTACCACACGAACCTAAGCTAA 59.961 41.667 0.00 0.00 0.00 3.09
2245 4609 3.314541 ACCACACGAACCTAAGCTAAG 57.685 47.619 0.00 0.00 0.00 2.18
2246 4610 2.028385 ACCACACGAACCTAAGCTAAGG 60.028 50.000 0.00 0.00 42.82 2.69
2256 4620 3.610911 CCTAAGCTAAGGTCCTGTTTGG 58.389 50.000 0.00 0.00 37.10 3.28
2257 4621 3.009143 CCTAAGCTAAGGTCCTGTTTGGT 59.991 47.826 0.00 0.00 37.07 3.67
2258 4622 3.595190 AAGCTAAGGTCCTGTTTGGTT 57.405 42.857 0.00 0.00 37.07 3.67
2259 4623 3.141767 AGCTAAGGTCCTGTTTGGTTC 57.858 47.619 0.00 0.00 37.07 3.62
2260 4624 2.160205 GCTAAGGTCCTGTTTGGTTCC 58.840 52.381 0.00 0.00 37.07 3.62
2261 4625 2.488347 GCTAAGGTCCTGTTTGGTTCCA 60.488 50.000 0.00 0.00 37.07 3.53
2262 4626 2.838637 AAGGTCCTGTTTGGTTCCAA 57.161 45.000 0.00 0.00 37.07 3.53
2263 4627 2.838637 AGGTCCTGTTTGGTTCCAAA 57.161 45.000 12.29 12.29 37.07 3.28
2264 4628 3.328535 AGGTCCTGTTTGGTTCCAAAT 57.671 42.857 18.11 0.31 38.07 2.32
2265 4629 4.463050 AGGTCCTGTTTGGTTCCAAATA 57.537 40.909 18.11 14.87 38.07 1.40
2266 4630 4.810345 AGGTCCTGTTTGGTTCCAAATAA 58.190 39.130 18.11 10.23 38.07 1.40
2267 4631 4.832823 AGGTCCTGTTTGGTTCCAAATAAG 59.167 41.667 18.11 17.05 38.07 1.73
2268 4632 4.587262 GGTCCTGTTTGGTTCCAAATAAGT 59.413 41.667 18.11 0.00 38.07 2.24
2269 4633 5.278808 GGTCCTGTTTGGTTCCAAATAAGTC 60.279 44.000 18.11 8.65 38.07 3.01
2270 4634 5.300792 GTCCTGTTTGGTTCCAAATAAGTCA 59.699 40.000 18.11 10.94 38.07 3.41
2271 4635 6.015434 GTCCTGTTTGGTTCCAAATAAGTCAT 60.015 38.462 18.11 0.00 38.07 3.06
2272 4636 6.553100 TCCTGTTTGGTTCCAAATAAGTCATT 59.447 34.615 18.11 0.00 38.07 2.57
2273 4637 7.726291 TCCTGTTTGGTTCCAAATAAGTCATTA 59.274 33.333 18.11 2.70 38.07 1.90
2274 4638 8.364142 CCTGTTTGGTTCCAAATAAGTCATTAA 58.636 33.333 18.11 0.00 38.07 1.40
2275 4639 9.191995 CTGTTTGGTTCCAAATAAGTCATTAAC 57.808 33.333 18.11 4.50 38.07 2.01
2276 4640 8.919145 TGTTTGGTTCCAAATAAGTCATTAACT 58.081 29.630 18.11 0.00 37.76 2.24
2277 4641 9.758651 GTTTGGTTCCAAATAAGTCATTAACTT 57.241 29.630 18.11 0.00 39.75 2.66
2298 4662 8.738645 AACTTATAAGATGGAAAGATGTGGTC 57.261 34.615 19.38 0.00 0.00 4.02
2299 4663 7.861629 ACTTATAAGATGGAAAGATGTGGTCA 58.138 34.615 19.38 0.00 0.00 4.02
2300 4664 7.989741 ACTTATAAGATGGAAAGATGTGGTCAG 59.010 37.037 19.38 0.00 0.00 3.51
2301 4665 4.916041 AAGATGGAAAGATGTGGTCAGA 57.084 40.909 0.00 0.00 0.00 3.27
2302 4666 5.447778 AAGATGGAAAGATGTGGTCAGAT 57.552 39.130 0.00 0.00 0.00 2.90
2303 4667 6.566079 AAGATGGAAAGATGTGGTCAGATA 57.434 37.500 0.00 0.00 0.00 1.98
2304 4668 6.566079 AGATGGAAAGATGTGGTCAGATAA 57.434 37.500 0.00 0.00 0.00 1.75
2305 4669 7.146715 AGATGGAAAGATGTGGTCAGATAAT 57.853 36.000 0.00 0.00 0.00 1.28
2306 4670 7.580910 AGATGGAAAGATGTGGTCAGATAATT 58.419 34.615 0.00 0.00 0.00 1.40
2307 4671 8.057623 AGATGGAAAGATGTGGTCAGATAATTT 58.942 33.333 0.00 0.00 0.00 1.82
2308 4672 9.342308 GATGGAAAGATGTGGTCAGATAATTTA 57.658 33.333 0.00 0.00 0.00 1.40
2309 4673 9.872684 ATGGAAAGATGTGGTCAGATAATTTAT 57.127 29.630 0.00 0.00 0.00 1.40
2317 4681 9.784531 ATGTGGTCAGATAATTTATAAGTCAGG 57.215 33.333 0.00 0.00 0.00 3.86
2318 4682 8.768397 TGTGGTCAGATAATTTATAAGTCAGGT 58.232 33.333 0.00 0.00 0.00 4.00
2319 4683 9.046296 GTGGTCAGATAATTTATAAGTCAGGTG 57.954 37.037 0.00 0.00 0.00 4.00
2320 4684 8.988060 TGGTCAGATAATTTATAAGTCAGGTGA 58.012 33.333 0.00 0.00 0.00 4.02
2321 4685 9.482627 GGTCAGATAATTTATAAGTCAGGTGAG 57.517 37.037 0.00 0.00 0.00 3.51
2326 4690 9.832445 GATAATTTATAAGTCAGGTGAGAACCA 57.168 33.333 0.00 0.00 0.00 3.67
2327 4691 9.838339 ATAATTTATAAGTCAGGTGAGAACCAG 57.162 33.333 0.00 0.00 0.00 4.00
2328 4692 6.928348 TTTATAAGTCAGGTGAGAACCAGA 57.072 37.500 0.00 0.00 0.00 3.86
2329 4693 4.810191 ATAAGTCAGGTGAGAACCAGAC 57.190 45.455 11.31 11.31 43.83 3.51
2330 4694 0.962489 AGTCAGGTGAGAACCAGACG 59.038 55.000 12.89 0.00 46.71 4.18
2331 4695 0.038159 GTCAGGTGAGAACCAGACGG 60.038 60.000 4.90 0.00 36.74 4.79
2332 4696 1.185618 TCAGGTGAGAACCAGACGGG 61.186 60.000 0.00 0.00 44.81 5.28
2333 4697 2.047179 GGTGAGAACCAGACGGGC 60.047 66.667 0.00 0.00 42.05 6.13
2334 4698 2.741092 GTGAGAACCAGACGGGCA 59.259 61.111 0.00 0.00 42.05 5.36
2335 4699 1.070786 GTGAGAACCAGACGGGCAA 59.929 57.895 0.00 0.00 42.05 4.52
2336 4700 0.321653 GTGAGAACCAGACGGGCAAT 60.322 55.000 0.00 0.00 42.05 3.56
2337 4701 0.400213 TGAGAACCAGACGGGCAATT 59.600 50.000 0.00 0.00 42.05 2.32
2338 4702 1.202879 TGAGAACCAGACGGGCAATTT 60.203 47.619 0.00 0.00 42.05 1.82
2339 4703 2.039216 TGAGAACCAGACGGGCAATTTA 59.961 45.455 0.00 0.00 42.05 1.40
2340 4704 3.279434 GAGAACCAGACGGGCAATTTAT 58.721 45.455 0.00 0.00 42.05 1.40
2341 4705 4.080807 TGAGAACCAGACGGGCAATTTATA 60.081 41.667 0.00 0.00 42.05 0.98
2342 4706 4.850680 AGAACCAGACGGGCAATTTATAA 58.149 39.130 0.00 0.00 42.05 0.98
2343 4707 5.258051 AGAACCAGACGGGCAATTTATAAA 58.742 37.500 0.00 0.00 42.05 1.40
2344 4708 5.891551 AGAACCAGACGGGCAATTTATAAAT 59.108 36.000 4.81 4.81 42.05 1.40
2345 4709 5.767816 ACCAGACGGGCAATTTATAAATC 57.232 39.130 11.08 0.25 42.05 2.17
2346 4710 5.197451 ACCAGACGGGCAATTTATAAATCA 58.803 37.500 11.08 0.00 42.05 2.57
2347 4711 5.833131 ACCAGACGGGCAATTTATAAATCAT 59.167 36.000 11.08 0.00 42.05 2.45
2348 4712 6.151691 CCAGACGGGCAATTTATAAATCATG 58.848 40.000 11.08 8.10 0.00 3.07
2349 4713 6.239008 CCAGACGGGCAATTTATAAATCATGT 60.239 38.462 11.08 6.27 0.00 3.21
2350 4714 6.638063 CAGACGGGCAATTTATAAATCATGTG 59.362 38.462 11.08 7.12 0.00 3.21
2351 4715 6.545666 AGACGGGCAATTTATAAATCATGTGA 59.454 34.615 11.08 0.00 0.00 3.58
2352 4716 6.503524 ACGGGCAATTTATAAATCATGTGAC 58.496 36.000 11.08 7.85 0.00 3.67
2353 4717 6.321181 ACGGGCAATTTATAAATCATGTGACT 59.679 34.615 11.08 0.00 0.00 3.41
2354 4718 7.147915 ACGGGCAATTTATAAATCATGTGACTT 60.148 33.333 11.08 0.00 0.00 3.01
2355 4719 8.349245 CGGGCAATTTATAAATCATGTGACTTA 58.651 33.333 11.08 0.00 0.00 2.24
2367 4731 9.685276 AAATCATGTGACTTATAAATCAGGTGA 57.315 29.630 11.36 11.36 0.00 4.02
2368 4732 9.857656 AATCATGTGACTTATAAATCAGGTGAT 57.142 29.630 13.85 13.85 34.25 3.06
2369 4733 9.857656 ATCATGTGACTTATAAATCAGGTGATT 57.142 29.630 13.85 0.00 45.91 2.57
2382 4746 7.552050 AATCAGGTGATTTATTGGAACCAAA 57.448 32.000 10.36 0.00 41.64 3.28
2383 4747 6.339587 TCAGGTGATTTATTGGAACCAAAC 57.660 37.500 10.36 3.26 39.55 2.93
2384 4748 5.835819 TCAGGTGATTTATTGGAACCAAACA 59.164 36.000 10.36 0.00 39.55 2.83
2385 4749 6.496565 TCAGGTGATTTATTGGAACCAAACAT 59.503 34.615 10.36 3.32 39.55 2.71
2386 4750 6.591062 CAGGTGATTTATTGGAACCAAACATG 59.409 38.462 10.36 7.12 39.55 3.21
2387 4751 5.351189 GGTGATTTATTGGAACCAAACATGC 59.649 40.000 10.36 2.16 39.55 4.06
2388 4752 5.351189 GTGATTTATTGGAACCAAACATGCC 59.649 40.000 10.36 0.64 39.55 4.40
2389 4753 3.971245 TTATTGGAACCAAACATGCCC 57.029 42.857 10.36 0.00 39.55 5.36
2390 4754 2.028561 ATTGGAACCAAACATGCCCT 57.971 45.000 10.36 0.00 39.55 5.19
2391 4755 2.685106 TTGGAACCAAACATGCCCTA 57.315 45.000 3.62 0.00 32.44 3.53
2392 4756 2.685106 TGGAACCAAACATGCCCTAA 57.315 45.000 0.00 0.00 0.00 2.69
2446 4810 4.471726 GCACCTGCATCTGCGTGC 62.472 66.667 15.87 15.87 45.70 5.34
2470 4834 2.973694 GCATGGATGGCAAAAGACAT 57.026 45.000 0.00 0.00 0.00 3.06
2471 4835 2.817901 GCATGGATGGCAAAAGACATC 58.182 47.619 2.71 2.71 42.05 3.06
2472 4836 2.429610 GCATGGATGGCAAAAGACATCT 59.570 45.455 10.80 0.00 42.34 2.90
2473 4837 3.490419 GCATGGATGGCAAAAGACATCTC 60.490 47.826 10.80 2.83 42.34 2.75
2474 4838 3.726557 TGGATGGCAAAAGACATCTCT 57.273 42.857 10.80 0.00 42.34 3.10
2475 4839 4.842531 TGGATGGCAAAAGACATCTCTA 57.157 40.909 10.80 0.00 42.34 2.43
2476 4840 4.517285 TGGATGGCAAAAGACATCTCTAC 58.483 43.478 10.80 0.00 42.34 2.59
2477 4841 3.879892 GGATGGCAAAAGACATCTCTACC 59.120 47.826 10.80 0.00 42.34 3.18
2478 4842 3.350219 TGGCAAAAGACATCTCTACCC 57.650 47.619 0.00 0.00 0.00 3.69
2479 4843 2.280628 GGCAAAAGACATCTCTACCCG 58.719 52.381 0.00 0.00 0.00 5.28
2480 4844 1.666189 GCAAAAGACATCTCTACCCGC 59.334 52.381 0.00 0.00 0.00 6.13
2481 4845 1.927174 CAAAAGACATCTCTACCCGCG 59.073 52.381 0.00 0.00 0.00 6.46
2482 4846 0.179108 AAAGACATCTCTACCCGCGC 60.179 55.000 0.00 0.00 0.00 6.86
2483 4847 1.320344 AAGACATCTCTACCCGCGCA 61.320 55.000 8.75 0.00 0.00 6.09
2484 4848 1.109920 AGACATCTCTACCCGCGCAT 61.110 55.000 8.75 0.00 0.00 4.73
2485 4849 0.941463 GACATCTCTACCCGCGCATG 60.941 60.000 8.75 3.08 0.00 4.06
2486 4850 1.665916 CATCTCTACCCGCGCATGG 60.666 63.158 8.75 10.18 0.00 3.66
2487 4851 3.521529 ATCTCTACCCGCGCATGGC 62.522 63.158 8.75 0.00 38.69 4.40
2488 4852 4.529219 CTCTACCCGCGCATGGCA 62.529 66.667 8.75 0.00 43.84 4.92
2489 4853 3.814615 CTCTACCCGCGCATGGCAT 62.815 63.158 8.75 0.00 43.84 4.40
2490 4854 3.653009 CTACCCGCGCATGGCATG 61.653 66.667 22.99 22.99 43.84 4.06
2496 4860 4.961511 GCGCATGGCATGGCATGG 62.962 66.667 44.47 36.70 42.87 3.66
2514 4878 2.897207 CATGGCATGCACCTTGGG 59.103 61.111 21.36 0.00 32.55 4.12
2515 4879 3.078836 ATGGCATGCACCTTGGGC 61.079 61.111 21.36 0.00 0.00 5.36
2516 4880 3.612115 ATGGCATGCACCTTGGGCT 62.612 57.895 21.36 0.00 30.56 5.19
2517 4881 2.999063 GGCATGCACCTTGGGCTT 60.999 61.111 21.36 0.00 30.56 4.35
2518 4882 2.586293 GGCATGCACCTTGGGCTTT 61.586 57.895 21.36 0.00 30.56 3.51
2519 4883 1.375013 GCATGCACCTTGGGCTTTG 60.375 57.895 14.21 0.00 30.56 2.77
2520 4884 1.818959 GCATGCACCTTGGGCTTTGA 61.819 55.000 14.21 0.00 30.56 2.69
2521 4885 0.899720 CATGCACCTTGGGCTTTGAT 59.100 50.000 0.00 0.00 30.56 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.389329 CCAGGATACAGCTGGTTGTAGAT 59.611 47.826 19.93 0.00 37.01 1.98
1 2 2.766263 CCAGGATACAGCTGGTTGTAGA 59.234 50.000 19.93 0.00 37.01 2.59
2 3 3.185246 CCAGGATACAGCTGGTTGTAG 57.815 52.381 19.93 3.58 37.01 2.74
8 9 4.137543 GGAAAATACCAGGATACAGCTGG 58.862 47.826 19.93 0.79 43.45 4.85
9 10 4.576463 GTGGAAAATACCAGGATACAGCTG 59.424 45.833 13.48 13.48 40.85 4.24
10 11 4.227300 TGTGGAAAATACCAGGATACAGCT 59.773 41.667 0.00 0.00 40.85 4.24
11 12 4.523083 TGTGGAAAATACCAGGATACAGC 58.477 43.478 0.00 0.00 40.85 4.40
12 13 5.466728 CGATGTGGAAAATACCAGGATACAG 59.533 44.000 0.00 0.00 40.85 2.74
13 14 5.104693 ACGATGTGGAAAATACCAGGATACA 60.105 40.000 0.00 0.00 40.85 2.29
14 15 5.365619 ACGATGTGGAAAATACCAGGATAC 58.634 41.667 0.00 0.00 40.85 2.24
15 16 5.623956 ACGATGTGGAAAATACCAGGATA 57.376 39.130 0.00 0.00 40.85 2.59
16 17 4.503714 ACGATGTGGAAAATACCAGGAT 57.496 40.909 0.00 0.00 40.85 3.24
17 18 3.992943 ACGATGTGGAAAATACCAGGA 57.007 42.857 0.00 0.00 40.85 3.86
18 19 4.261801 AGAACGATGTGGAAAATACCAGG 58.738 43.478 0.00 0.00 40.85 4.45
19 20 6.538742 ACATAGAACGATGTGGAAAATACCAG 59.461 38.462 0.00 0.00 40.85 4.00
20 21 6.411376 ACATAGAACGATGTGGAAAATACCA 58.589 36.000 0.00 0.00 38.64 3.25
21 22 6.920569 ACATAGAACGATGTGGAAAATACC 57.079 37.500 0.00 0.00 38.64 2.73
22 23 7.280205 AGGAACATAGAACGATGTGGAAAATAC 59.720 37.037 1.77 0.00 39.99 1.89
23 24 7.335627 AGGAACATAGAACGATGTGGAAAATA 58.664 34.615 1.77 0.00 39.99 1.40
24 25 6.180472 AGGAACATAGAACGATGTGGAAAAT 58.820 36.000 1.77 0.00 39.99 1.82
25 26 5.556915 AGGAACATAGAACGATGTGGAAAA 58.443 37.500 1.77 0.00 39.99 2.29
26 27 5.160607 AGGAACATAGAACGATGTGGAAA 57.839 39.130 1.77 0.00 39.99 3.13
27 28 4.819105 AGGAACATAGAACGATGTGGAA 57.181 40.909 1.77 0.00 39.99 3.53
28 29 4.466370 AGAAGGAACATAGAACGATGTGGA 59.534 41.667 1.77 0.00 39.99 4.02
29 30 4.759782 AGAAGGAACATAGAACGATGTGG 58.240 43.478 1.77 0.00 39.99 4.17
30 31 6.727824 AAAGAAGGAACATAGAACGATGTG 57.272 37.500 1.77 0.00 39.99 3.21
31 32 7.745620 AAAAAGAAGGAACATAGAACGATGT 57.254 32.000 0.00 0.00 41.92 3.06
56 57 8.964476 TGGTAAGCAATCCAAACAATTAAAAA 57.036 26.923 0.00 0.00 0.00 1.94
57 58 8.997323 CATGGTAAGCAATCCAAACAATTAAAA 58.003 29.630 0.00 0.00 37.27 1.52
58 59 8.153550 ACATGGTAAGCAATCCAAACAATTAAA 58.846 29.630 0.00 0.00 37.27 1.52
59 60 7.601886 CACATGGTAAGCAATCCAAACAATTAA 59.398 33.333 0.00 0.00 37.27 1.40
60 61 7.095910 CACATGGTAAGCAATCCAAACAATTA 58.904 34.615 0.00 0.00 37.27 1.40
61 62 5.933463 CACATGGTAAGCAATCCAAACAATT 59.067 36.000 0.00 0.00 37.27 2.32
62 63 5.011943 ACACATGGTAAGCAATCCAAACAAT 59.988 36.000 0.00 0.00 37.27 2.71
63 64 4.343526 ACACATGGTAAGCAATCCAAACAA 59.656 37.500 0.00 0.00 37.27 2.83
64 65 3.894427 ACACATGGTAAGCAATCCAAACA 59.106 39.130 0.00 0.00 37.27 2.83
65 66 4.236935 CACACATGGTAAGCAATCCAAAC 58.763 43.478 0.00 0.00 37.27 2.93
66 67 3.894427 ACACACATGGTAAGCAATCCAAA 59.106 39.130 0.00 0.00 37.27 3.28
67 68 3.255395 CACACACATGGTAAGCAATCCAA 59.745 43.478 0.00 0.00 37.27 3.53
68 69 2.819019 CACACACATGGTAAGCAATCCA 59.181 45.455 0.00 0.00 38.14 3.41
69 70 3.081061 TCACACACATGGTAAGCAATCC 58.919 45.455 0.00 0.00 0.00 3.01
70 71 3.119849 GGTCACACACATGGTAAGCAATC 60.120 47.826 0.00 0.00 0.00 2.67
71 72 2.819608 GGTCACACACATGGTAAGCAAT 59.180 45.455 0.00 0.00 0.00 3.56
72 73 2.158682 AGGTCACACACATGGTAAGCAA 60.159 45.455 0.00 0.00 0.00 3.91
73 74 1.419762 AGGTCACACACATGGTAAGCA 59.580 47.619 0.00 0.00 0.00 3.91
74 75 1.806542 CAGGTCACACACATGGTAAGC 59.193 52.381 0.00 0.00 32.85 3.09
80 81 2.951642 AGAAAACCAGGTCACACACATG 59.048 45.455 0.00 0.00 36.49 3.21
81 82 3.297134 AGAAAACCAGGTCACACACAT 57.703 42.857 0.00 0.00 0.00 3.21
82 83 2.799126 AGAAAACCAGGTCACACACA 57.201 45.000 0.00 0.00 0.00 3.72
83 84 4.215613 GGAATAGAAAACCAGGTCACACAC 59.784 45.833 0.00 0.00 0.00 3.82
84 85 4.394729 GGAATAGAAAACCAGGTCACACA 58.605 43.478 0.00 0.00 0.00 3.72
85 86 3.756963 GGGAATAGAAAACCAGGTCACAC 59.243 47.826 0.00 0.00 0.00 3.82
86 87 3.245122 GGGGAATAGAAAACCAGGTCACA 60.245 47.826 0.00 0.00 0.00 3.58
87 88 3.010250 AGGGGAATAGAAAACCAGGTCAC 59.990 47.826 0.00 0.00 0.00 3.67
88 89 3.265489 AGGGGAATAGAAAACCAGGTCA 58.735 45.455 0.00 0.00 0.00 4.02
89 90 4.018324 AGAAGGGGAATAGAAAACCAGGTC 60.018 45.833 0.00 0.00 0.00 3.85
90 91 3.923425 AGAAGGGGAATAGAAAACCAGGT 59.077 43.478 0.00 0.00 0.00 4.00
91 92 4.018415 TGAGAAGGGGAATAGAAAACCAGG 60.018 45.833 0.00 0.00 0.00 4.45
92 93 5.179452 TGAGAAGGGGAATAGAAAACCAG 57.821 43.478 0.00 0.00 0.00 4.00
93 94 5.321927 GTTGAGAAGGGGAATAGAAAACCA 58.678 41.667 0.00 0.00 0.00 3.67
94 95 4.705507 GGTTGAGAAGGGGAATAGAAAACC 59.294 45.833 0.00 0.00 0.00 3.27
95 96 5.571285 AGGTTGAGAAGGGGAATAGAAAAC 58.429 41.667 0.00 0.00 0.00 2.43
96 97 5.312178 TGAGGTTGAGAAGGGGAATAGAAAA 59.688 40.000 0.00 0.00 0.00 2.29
97 98 4.849810 TGAGGTTGAGAAGGGGAATAGAAA 59.150 41.667 0.00 0.00 0.00 2.52
98 99 4.225267 GTGAGGTTGAGAAGGGGAATAGAA 59.775 45.833 0.00 0.00 0.00 2.10
99 100 3.775316 GTGAGGTTGAGAAGGGGAATAGA 59.225 47.826 0.00 0.00 0.00 1.98
100 101 3.118223 GGTGAGGTTGAGAAGGGGAATAG 60.118 52.174 0.00 0.00 0.00 1.73
101 102 2.844348 GGTGAGGTTGAGAAGGGGAATA 59.156 50.000 0.00 0.00 0.00 1.75
102 103 1.636003 GGTGAGGTTGAGAAGGGGAAT 59.364 52.381 0.00 0.00 0.00 3.01
103 104 1.064825 GGTGAGGTTGAGAAGGGGAA 58.935 55.000 0.00 0.00 0.00 3.97
104 105 0.840722 GGGTGAGGTTGAGAAGGGGA 60.841 60.000 0.00 0.00 0.00 4.81
105 106 0.842467 AGGGTGAGGTTGAGAAGGGG 60.842 60.000 0.00 0.00 0.00 4.79
106 107 0.326264 CAGGGTGAGGTTGAGAAGGG 59.674 60.000 0.00 0.00 0.00 3.95
107 108 0.326264 CCAGGGTGAGGTTGAGAAGG 59.674 60.000 0.00 0.00 0.00 3.46
108 109 1.277557 CTCCAGGGTGAGGTTGAGAAG 59.722 57.143 0.00 0.00 0.00 2.85
109 110 1.352083 CTCCAGGGTGAGGTTGAGAA 58.648 55.000 0.00 0.00 0.00 2.87
110 111 1.194781 GCTCCAGGGTGAGGTTGAGA 61.195 60.000 0.00 0.00 32.81 3.27
111 112 1.298014 GCTCCAGGGTGAGGTTGAG 59.702 63.158 0.00 0.00 32.81 3.02
112 113 2.224159 GGCTCCAGGGTGAGGTTGA 61.224 63.158 0.00 0.00 32.81 3.18
113 114 2.190488 GAGGCTCCAGGGTGAGGTTG 62.190 65.000 2.15 0.00 32.81 3.77
114 115 1.920835 GAGGCTCCAGGGTGAGGTT 60.921 63.158 2.15 0.00 32.81 3.50
115 116 2.284995 GAGGCTCCAGGGTGAGGT 60.285 66.667 2.15 0.00 32.81 3.85
116 117 2.284921 TGAGGCTCCAGGGTGAGG 60.285 66.667 12.86 0.00 32.81 3.86
117 118 2.985456 GTGAGGCTCCAGGGTGAG 59.015 66.667 12.86 0.00 35.40 3.51
118 119 2.997315 CGTGAGGCTCCAGGGTGA 60.997 66.667 12.86 0.00 0.00 4.02
157 158 2.408022 CCGGGTCGACGATGAGTC 59.592 66.667 9.92 0.00 46.16 3.36
158 159 3.138798 CCCGGGTCGACGATGAGT 61.139 66.667 14.18 0.00 35.47 3.41
159 160 4.570663 GCCCGGGTCGACGATGAG 62.571 72.222 24.63 0.00 35.47 2.90
161 162 2.852180 TATGCCCGGGTCGACGATG 61.852 63.158 24.63 1.23 35.47 3.84
162 163 2.520020 TATGCCCGGGTCGACGAT 60.520 61.111 24.63 7.37 35.47 3.73
163 164 3.520862 GTATGCCCGGGTCGACGA 61.521 66.667 24.63 0.00 35.47 4.20
164 165 4.580551 GGTATGCCCGGGTCGACG 62.581 72.222 24.63 0.00 0.00 5.12
165 166 4.231439 GGGTATGCCCGGGTCGAC 62.231 72.222 24.63 16.76 46.51 4.20
175 176 2.100879 CTACCAGGGCTCGGGTATGC 62.101 65.000 16.51 0.00 41.59 3.14
176 177 1.472662 CCTACCAGGGCTCGGGTATG 61.473 65.000 16.51 9.92 41.59 2.39
177 178 1.152312 CCTACCAGGGCTCGGGTAT 60.152 63.158 16.51 0.00 41.59 2.73
178 179 2.172229 AACCTACCAGGGCTCGGGTA 62.172 60.000 15.33 15.33 41.61 3.69
179 180 3.557695 AACCTACCAGGGCTCGGGT 62.558 63.158 14.54 14.54 43.72 5.28
180 181 2.298661 AAACCTACCAGGGCTCGGG 61.299 63.158 0.00 0.00 40.58 5.14
181 182 1.078426 CAAACCTACCAGGGCTCGG 60.078 63.158 0.00 0.00 40.58 4.63
182 183 1.078426 CCAAACCTACCAGGGCTCG 60.078 63.158 0.00 0.00 40.58 5.03
183 184 1.378646 GCCAAACCTACCAGGGCTC 60.379 63.158 0.00 0.00 40.58 4.70
184 185 2.763902 GCCAAACCTACCAGGGCT 59.236 61.111 0.00 0.00 40.58 5.19
185 186 1.378646 GAGCCAAACCTACCAGGGC 60.379 63.158 0.00 0.00 40.58 5.19
186 187 0.253327 GAGAGCCAAACCTACCAGGG 59.747 60.000 0.00 0.00 40.58 4.45
187 188 0.253327 GGAGAGCCAAACCTACCAGG 59.747 60.000 0.00 0.00 42.49 4.45
188 189 1.208293 GAGGAGAGCCAAACCTACCAG 59.792 57.143 0.00 0.00 36.29 4.00
189 190 1.276622 GAGGAGAGCCAAACCTACCA 58.723 55.000 0.00 0.00 36.29 3.25
190 191 0.542333 GGAGGAGAGCCAAACCTACC 59.458 60.000 0.00 0.00 36.29 3.18
191 192 0.542333 GGGAGGAGAGCCAAACCTAC 59.458 60.000 0.00 0.00 36.29 3.18
192 193 0.417841 AGGGAGGAGAGCCAAACCTA 59.582 55.000 0.00 0.00 33.68 3.08
193 194 0.912006 GAGGGAGGAGAGCCAAACCT 60.912 60.000 0.00 0.00 36.78 3.50
194 195 1.604915 GAGGGAGGAGAGCCAAACC 59.395 63.158 0.00 0.00 36.29 3.27
195 196 1.219393 CGAGGGAGGAGAGCCAAAC 59.781 63.158 0.00 0.00 36.29 2.93
196 197 1.990060 CCGAGGGAGGAGAGCCAAA 60.990 63.158 0.00 0.00 36.29 3.28
197 198 2.364317 CCGAGGGAGGAGAGCCAA 60.364 66.667 0.00 0.00 36.29 4.52
198 199 4.465446 CCCGAGGGAGGAGAGCCA 62.465 72.222 0.84 0.00 37.50 4.75
230 231 4.537433 AGGAGATTCAGCCGCCGC 62.537 66.667 0.00 0.00 0.00 6.53
231 232 2.587194 CAGGAGATTCAGCCGCCG 60.587 66.667 0.00 0.00 0.00 6.46
232 233 2.899339 GCAGGAGATTCAGCCGCC 60.899 66.667 0.00 0.00 0.00 6.13
233 234 2.899339 GGCAGGAGATTCAGCCGC 60.899 66.667 0.00 0.00 37.41 6.53
236 237 1.817099 CGGTGGCAGGAGATTCAGC 60.817 63.158 0.00 0.00 0.00 4.26
237 238 1.153289 CCGGTGGCAGGAGATTCAG 60.153 63.158 0.00 0.00 0.00 3.02
238 239 1.612146 TCCGGTGGCAGGAGATTCA 60.612 57.895 0.00 0.00 33.19 2.57
239 240 3.309582 TCCGGTGGCAGGAGATTC 58.690 61.111 0.00 0.00 33.19 2.52
246 247 3.316573 GAAGGGACTCCGGTGGCAG 62.317 68.421 12.27 0.00 38.49 4.85
247 248 3.319198 GAAGGGACTCCGGTGGCA 61.319 66.667 12.27 0.00 38.49 4.92
248 249 3.003763 AGAAGGGACTCCGGTGGC 61.004 66.667 8.63 4.27 38.49 5.01
249 250 0.905337 AAGAGAAGGGACTCCGGTGG 60.905 60.000 8.63 2.00 38.49 4.61
250 251 0.977395 AAAGAGAAGGGACTCCGGTG 59.023 55.000 0.00 0.00 38.49 4.94
251 252 2.177734 GTAAAGAGAAGGGACTCCGGT 58.822 52.381 0.00 0.00 38.49 5.28
252 253 1.481363 GGTAAAGAGAAGGGACTCCGG 59.519 57.143 0.00 0.00 38.49 5.14
253 254 1.134560 CGGTAAAGAGAAGGGACTCCG 59.865 57.143 0.00 0.00 38.49 4.63
254 255 1.481363 CCGGTAAAGAGAAGGGACTCC 59.519 57.143 0.00 0.00 38.49 3.85
255 256 1.134759 GCCGGTAAAGAGAAGGGACTC 60.135 57.143 1.90 0.00 38.49 3.36
257 258 0.107800 GGCCGGTAAAGAGAAGGGAC 60.108 60.000 1.90 0.00 0.00 4.46
258 259 1.610554 CGGCCGGTAAAGAGAAGGGA 61.611 60.000 20.10 0.00 0.00 4.20
259 260 1.153429 CGGCCGGTAAAGAGAAGGG 60.153 63.158 20.10 0.00 0.00 3.95
260 261 1.153429 CCGGCCGGTAAAGAGAAGG 60.153 63.158 36.64 5.51 0.00 3.46
261 262 4.515404 CCGGCCGGTAAAGAGAAG 57.485 61.111 36.64 6.12 0.00 2.85
281 282 1.988982 GAGGGAGGGTGGAGCCAATC 61.989 65.000 0.00 0.00 39.65 2.67
282 283 2.003548 GAGGGAGGGTGGAGCCAAT 61.004 63.158 0.00 0.00 39.65 3.16
283 284 2.610859 GAGGGAGGGTGGAGCCAA 60.611 66.667 0.00 0.00 39.65 4.52
284 285 4.741239 GGAGGGAGGGTGGAGCCA 62.741 72.222 0.00 0.00 39.65 4.75
286 287 4.741239 TGGGAGGGAGGGTGGAGC 62.741 72.222 0.00 0.00 0.00 4.70
287 288 0.921256 ATTTGGGAGGGAGGGTGGAG 60.921 60.000 0.00 0.00 0.00 3.86
288 289 0.919289 GATTTGGGAGGGAGGGTGGA 60.919 60.000 0.00 0.00 0.00 4.02
289 290 1.615262 GATTTGGGAGGGAGGGTGG 59.385 63.158 0.00 0.00 0.00 4.61
290 291 1.615262 GGATTTGGGAGGGAGGGTG 59.385 63.158 0.00 0.00 0.00 4.61
291 292 1.622752 GGGATTTGGGAGGGAGGGT 60.623 63.158 0.00 0.00 0.00 4.34
292 293 2.395353 GGGGATTTGGGAGGGAGGG 61.395 68.421 0.00 0.00 0.00 4.30
293 294 2.395353 GGGGGATTTGGGAGGGAGG 61.395 68.421 0.00 0.00 0.00 4.30
294 295 2.757124 CGGGGGATTTGGGAGGGAG 61.757 68.421 0.00 0.00 0.00 4.30
295 296 2.694616 CGGGGGATTTGGGAGGGA 60.695 66.667 0.00 0.00 0.00 4.20
296 297 4.522975 GCGGGGGATTTGGGAGGG 62.523 72.222 0.00 0.00 0.00 4.30
297 298 4.522975 GGCGGGGGATTTGGGAGG 62.523 72.222 0.00 0.00 0.00 4.30
298 299 4.522975 GGGCGGGGGATTTGGGAG 62.523 72.222 0.00 0.00 0.00 4.30
310 311 3.930012 GAGGAAGATCGGGGGCGG 61.930 72.222 0.00 0.00 0.00 6.13
311 312 3.930012 GGAGGAAGATCGGGGGCG 61.930 72.222 0.00 0.00 0.00 6.13
312 313 2.446802 AGGAGGAAGATCGGGGGC 60.447 66.667 0.00 0.00 0.00 5.80
313 314 1.839296 GGAGGAGGAAGATCGGGGG 60.839 68.421 0.00 0.00 0.00 5.40
418 419 4.524318 CGGTAGGCGGCGTTGGAT 62.524 66.667 9.37 0.00 0.00 3.41
552 555 1.571457 TCACCCCAGGAACTTCCAAAA 59.429 47.619 10.57 0.00 39.61 2.44
556 559 1.134438 AGGTCACCCCAGGAACTTCC 61.134 60.000 0.00 0.00 34.60 3.46
631 640 5.699458 CAGATGAAATTTTGAGCTGCCTTTT 59.301 36.000 1.03 0.00 0.00 2.27
748 757 6.009589 ACCATCCATGTAACACAGATTTTCA 58.990 36.000 0.00 0.00 0.00 2.69
749 758 6.515272 ACCATCCATGTAACACAGATTTTC 57.485 37.500 0.00 0.00 0.00 2.29
751 760 6.122277 CCTACCATCCATGTAACACAGATTT 58.878 40.000 0.00 0.00 0.00 2.17
753 762 4.721776 ACCTACCATCCATGTAACACAGAT 59.278 41.667 0.00 0.00 0.00 2.90
768 2190 2.107901 CGGAGGGAGTACTACCTACCAT 59.892 54.545 28.27 6.67 46.12 3.55
769 2191 1.492176 CGGAGGGAGTACTACCTACCA 59.508 57.143 28.27 0.00 46.12 3.25
774 2196 0.467106 GGGACGGAGGGAGTACTACC 60.467 65.000 17.30 17.30 0.00 3.18
778 2200 0.978907 TTTTGGGACGGAGGGAGTAC 59.021 55.000 0.00 0.00 0.00 2.73
788 2210 9.983804 GATAGTCTAAAAACTTATTTTGGGACG 57.016 33.333 11.79 0.00 40.80 4.79
799 2221 5.250774 TGCCCTCCTGATAGTCTAAAAACTT 59.749 40.000 0.00 0.00 0.00 2.66
800 2222 4.783227 TGCCCTCCTGATAGTCTAAAAACT 59.217 41.667 0.00 0.00 0.00 2.66
801 2223 5.099042 TGCCCTCCTGATAGTCTAAAAAC 57.901 43.478 0.00 0.00 0.00 2.43
802 2224 5.772393 TTGCCCTCCTGATAGTCTAAAAA 57.228 39.130 0.00 0.00 0.00 1.94
804 2226 5.772393 TTTTGCCCTCCTGATAGTCTAAA 57.228 39.130 0.00 0.00 0.00 1.85
805 2227 5.497474 GTTTTTGCCCTCCTGATAGTCTAA 58.503 41.667 0.00 0.00 0.00 2.10
808 2230 2.678336 CGTTTTTGCCCTCCTGATAGTC 59.322 50.000 0.00 0.00 0.00 2.59
810 2232 1.401905 GCGTTTTTGCCCTCCTGATAG 59.598 52.381 0.00 0.00 0.00 2.08
812 2234 2.267045 GCGTTTTTGCCCTCCTGAT 58.733 52.632 0.00 0.00 0.00 2.90
813 2235 3.758172 GCGTTTTTGCCCTCCTGA 58.242 55.556 0.00 0.00 0.00 3.86
832 2254 0.894835 CTGAAAAATGGAACCGGGGG 59.105 55.000 6.32 0.00 0.00 5.40
833 2255 1.544246 GACTGAAAAATGGAACCGGGG 59.456 52.381 6.32 0.00 0.00 5.73
834 2256 1.544246 GGACTGAAAAATGGAACCGGG 59.456 52.381 6.32 0.00 0.00 5.73
835 2257 1.544246 GGGACTGAAAAATGGAACCGG 59.456 52.381 0.00 0.00 0.00 5.28
836 2258 2.235016 TGGGACTGAAAAATGGAACCG 58.765 47.619 0.00 0.00 0.00 4.44
837 2259 4.631131 CTTTGGGACTGAAAAATGGAACC 58.369 43.478 0.00 0.00 0.00 3.62
839 2261 3.708631 TGCTTTGGGACTGAAAAATGGAA 59.291 39.130 0.00 0.00 0.00 3.53
840 2262 3.303938 TGCTTTGGGACTGAAAAATGGA 58.696 40.909 0.00 0.00 0.00 3.41
841 2263 3.749665 TGCTTTGGGACTGAAAAATGG 57.250 42.857 0.00 0.00 0.00 3.16
843 2265 6.670695 ATACTTGCTTTGGGACTGAAAAAT 57.329 33.333 0.00 0.00 0.00 1.82
844 2266 6.478512 AATACTTGCTTTGGGACTGAAAAA 57.521 33.333 0.00 0.00 0.00 1.94
845 2267 7.775053 ATAATACTTGCTTTGGGACTGAAAA 57.225 32.000 0.00 0.00 0.00 2.29
846 2268 7.669722 AGAATAATACTTGCTTTGGGACTGAAA 59.330 33.333 0.00 0.00 0.00 2.69
847 2269 7.121168 CAGAATAATACTTGCTTTGGGACTGAA 59.879 37.037 0.00 0.00 0.00 3.02
848 2270 6.599244 CAGAATAATACTTGCTTTGGGACTGA 59.401 38.462 0.00 0.00 0.00 3.41
849 2271 6.678900 GCAGAATAATACTTGCTTTGGGACTG 60.679 42.308 0.00 0.00 0.00 3.51
850 2272 5.358160 GCAGAATAATACTTGCTTTGGGACT 59.642 40.000 0.00 0.00 0.00 3.85
851 2273 5.358160 AGCAGAATAATACTTGCTTTGGGAC 59.642 40.000 0.00 0.00 0.00 4.46
852 2274 5.509498 AGCAGAATAATACTTGCTTTGGGA 58.491 37.500 0.00 0.00 0.00 4.37
858 2280 7.011857 GCTAGACAAAGCAGAATAATACTTGCT 59.988 37.037 0.00 0.00 42.30 3.91
859 2281 7.128976 GCTAGACAAAGCAGAATAATACTTGC 58.871 38.462 0.00 0.00 42.30 4.01
896 2343 5.932303 TGCAGTTAACTCTAACCACTTCATC 59.068 40.000 4.77 0.00 38.59 2.92
910 2357 6.699575 ACAGAGAAAAACATGCAGTTAACT 57.300 33.333 1.12 1.12 40.26 2.24
916 2363 8.356533 ACAAATAAACAGAGAAAAACATGCAG 57.643 30.769 0.00 0.00 0.00 4.41
1080 2527 2.930040 ACACTTGTATGCTGCACGTATC 59.070 45.455 3.57 0.00 0.00 2.24
1146 2593 1.898154 GCCGGTAGACACAGATGGT 59.102 57.895 1.90 0.00 0.00 3.55
1183 2630 1.656587 TCCCATGCCTTCTGTACACT 58.343 50.000 0.00 0.00 0.00 3.55
1188 2635 0.251787 GGGTTTCCCATGCCTTCTGT 60.252 55.000 0.00 0.00 44.65 3.41
1245 2692 2.164624 GCTCTGTCTGGACGATTGTAGT 59.835 50.000 0.00 0.00 0.00 2.73
1248 2695 0.247736 GGCTCTGTCTGGACGATTGT 59.752 55.000 0.00 0.00 0.00 2.71
1254 2701 1.277557 ACATCAAGGCTCTGTCTGGAC 59.722 52.381 0.00 0.00 0.00 4.02
1308 2755 1.065102 CCATCGCCAGAGCTTTCAATG 59.935 52.381 0.00 0.00 36.60 2.82
1309 2756 1.386533 CCATCGCCAGAGCTTTCAAT 58.613 50.000 0.00 0.00 36.60 2.57
1322 2769 0.041839 CAATAGCTCAACGCCATCGC 60.042 55.000 0.00 0.00 40.39 4.58
1329 2776 1.588404 CAGGCGTACAATAGCTCAACG 59.412 52.381 0.00 0.00 36.67 4.10
1332 2779 3.284617 TCTACAGGCGTACAATAGCTCA 58.715 45.455 0.00 0.00 0.00 4.26
1380 2827 1.068333 CCCATTTCACCAAGTTCGCAG 60.068 52.381 0.00 0.00 0.00 5.18
1386 2833 3.258123 CCGAAATTCCCATTTCACCAAGT 59.742 43.478 8.11 0.00 46.17 3.16
1462 2909 1.518903 GAGCCACAGCCCAGAACAAC 61.519 60.000 0.00 0.00 41.25 3.32
1473 2920 5.239306 TGTTTTAAGAGAACATGAGCCACAG 59.761 40.000 0.00 0.00 32.44 3.66
1557 3036 2.857483 TGATCGGAGGTGCTTCAAAAA 58.143 42.857 0.00 0.00 0.00 1.94
1605 3084 3.834489 ACAGAGGAGTGAATATGCCAG 57.166 47.619 0.00 0.00 0.00 4.85
1606 3085 3.388024 GGTACAGAGGAGTGAATATGCCA 59.612 47.826 0.00 0.00 0.00 4.92
1607 3086 3.643792 AGGTACAGAGGAGTGAATATGCC 59.356 47.826 0.00 0.00 0.00 4.40
1608 3087 4.342378 TCAGGTACAGAGGAGTGAATATGC 59.658 45.833 0.00 0.00 0.00 3.14
1612 3091 2.763448 GCTCAGGTACAGAGGAGTGAAT 59.237 50.000 14.20 0.00 42.53 2.57
1613 3092 2.171840 GCTCAGGTACAGAGGAGTGAA 58.828 52.381 14.20 0.00 42.53 3.18
1615 3094 1.748493 GAGCTCAGGTACAGAGGAGTG 59.252 57.143 9.40 0.00 42.53 3.51
1616 3095 1.341581 GGAGCTCAGGTACAGAGGAGT 60.342 57.143 17.19 0.00 42.53 3.85
1619 3098 1.110442 CAGGAGCTCAGGTACAGAGG 58.890 60.000 17.19 0.30 42.53 3.69
1620 3099 2.136298 TCAGGAGCTCAGGTACAGAG 57.864 55.000 17.19 9.52 45.22 3.35
1621 3100 2.382882 CATCAGGAGCTCAGGTACAGA 58.617 52.381 17.19 0.02 0.00 3.41
1622 3101 1.411977 CCATCAGGAGCTCAGGTACAG 59.588 57.143 17.19 0.00 36.89 2.74
1688 3168 1.464189 GCGACTTGAATCGACAAAGGC 60.464 52.381 0.00 4.44 45.13 4.35
1733 3213 9.040939 GCCAATAATAAGCAAAATTAACGGAAT 57.959 29.630 0.00 0.00 0.00 3.01
1751 3231 5.709164 GGAGCATCAAGTCATAGCCAATAAT 59.291 40.000 0.00 0.00 36.25 1.28
1752 3232 5.065914 GGAGCATCAAGTCATAGCCAATAA 58.934 41.667 0.00 0.00 36.25 1.40
1753 3233 4.505566 GGGAGCATCAAGTCATAGCCAATA 60.506 45.833 0.00 0.00 36.25 1.90
1754 3234 3.484407 GGAGCATCAAGTCATAGCCAAT 58.516 45.455 0.00 0.00 36.25 3.16
1871 3351 2.535934 TGTTGTTGTTTCGTCAGTGC 57.464 45.000 0.00 0.00 0.00 4.40
1934 3414 9.403110 CAGAAAGAGTAATGCCAAATATATTGC 57.597 33.333 0.00 0.00 0.00 3.56
1935 3415 9.403110 GCAGAAAGAGTAATGCCAAATATATTG 57.597 33.333 0.00 0.00 32.49 1.90
1957 3780 2.022195 GTATAGACCAGACACGGCAGA 58.978 52.381 0.00 0.00 0.00 4.26
1992 3815 2.000447 GACCGTTCTGTGTAAGATGCC 59.000 52.381 0.00 0.00 33.93 4.40
2101 4025 3.920446 ACACGCACATAGTCATGTTACA 58.080 40.909 0.00 0.00 42.98 2.41
2195 4559 1.410004 TCGGTGTGAAGAGACAGGTT 58.590 50.000 0.00 0.00 0.00 3.50
2242 4606 3.955524 TTGGAACCAAACAGGACCTTA 57.044 42.857 3.62 0.00 41.22 2.69
2243 4607 2.838637 TTGGAACCAAACAGGACCTT 57.161 45.000 3.62 0.00 41.22 3.50
2244 4608 2.838637 TTTGGAACCAAACAGGACCT 57.161 45.000 14.02 0.00 40.51 3.85
2245 4609 4.587262 ACTTATTTGGAACCAAACAGGACC 59.413 41.667 19.23 0.00 46.80 4.46
2246 4610 5.300792 TGACTTATTTGGAACCAAACAGGAC 59.699 40.000 19.23 10.68 46.80 3.85
2247 4611 5.450453 TGACTTATTTGGAACCAAACAGGA 58.550 37.500 19.23 8.44 46.80 3.86
2248 4612 5.782893 TGACTTATTTGGAACCAAACAGG 57.217 39.130 19.23 12.17 46.80 4.00
2249 4613 9.191995 GTTAATGACTTATTTGGAACCAAACAG 57.808 33.333 19.23 18.64 46.80 3.16
2250 4614 8.919145 AGTTAATGACTTATTTGGAACCAAACA 58.081 29.630 19.23 13.20 41.09 2.83
2251 4615 9.758651 AAGTTAATGACTTATTTGGAACCAAAC 57.241 29.630 19.23 8.57 46.61 2.93
2272 4636 9.832445 GACCACATCTTTCCATCTTATAAGTTA 57.168 33.333 12.19 0.00 0.00 2.24
2273 4637 8.328758 TGACCACATCTTTCCATCTTATAAGTT 58.671 33.333 12.19 1.23 0.00 2.66
2274 4638 7.861629 TGACCACATCTTTCCATCTTATAAGT 58.138 34.615 12.19 0.00 0.00 2.24
2275 4639 8.206867 TCTGACCACATCTTTCCATCTTATAAG 58.793 37.037 6.11 6.11 0.00 1.73
2276 4640 8.089625 TCTGACCACATCTTTCCATCTTATAA 57.910 34.615 0.00 0.00 0.00 0.98
2277 4641 7.675161 TCTGACCACATCTTTCCATCTTATA 57.325 36.000 0.00 0.00 0.00 0.98
2278 4642 6.566079 TCTGACCACATCTTTCCATCTTAT 57.434 37.500 0.00 0.00 0.00 1.73
2279 4643 6.566079 ATCTGACCACATCTTTCCATCTTA 57.434 37.500 0.00 0.00 0.00 2.10
2280 4644 4.916041 TCTGACCACATCTTTCCATCTT 57.084 40.909 0.00 0.00 0.00 2.40
2281 4645 6.566079 TTATCTGACCACATCTTTCCATCT 57.434 37.500 0.00 0.00 0.00 2.90
2282 4646 7.814264 AATTATCTGACCACATCTTTCCATC 57.186 36.000 0.00 0.00 0.00 3.51
2283 4647 9.872684 ATAAATTATCTGACCACATCTTTCCAT 57.127 29.630 0.00 0.00 0.00 3.41
2291 4655 9.784531 CCTGACTTATAAATTATCTGACCACAT 57.215 33.333 0.00 0.00 0.00 3.21
2292 4656 8.768397 ACCTGACTTATAAATTATCTGACCACA 58.232 33.333 0.00 0.00 0.00 4.17
2293 4657 9.046296 CACCTGACTTATAAATTATCTGACCAC 57.954 37.037 0.00 0.00 0.00 4.16
2294 4658 8.988060 TCACCTGACTTATAAATTATCTGACCA 58.012 33.333 0.00 0.00 0.00 4.02
2295 4659 9.482627 CTCACCTGACTTATAAATTATCTGACC 57.517 37.037 0.00 0.00 0.00 4.02
2300 4664 9.832445 TGGTTCTCACCTGACTTATAAATTATC 57.168 33.333 0.00 0.00 44.61 1.75
2301 4665 9.838339 CTGGTTCTCACCTGACTTATAAATTAT 57.162 33.333 0.00 0.00 44.61 1.28
2302 4666 9.042450 TCTGGTTCTCACCTGACTTATAAATTA 57.958 33.333 0.00 0.00 44.07 1.40
2303 4667 7.918076 TCTGGTTCTCACCTGACTTATAAATT 58.082 34.615 0.00 0.00 44.07 1.82
2304 4668 7.496346 TCTGGTTCTCACCTGACTTATAAAT 57.504 36.000 0.00 0.00 44.07 1.40
2305 4669 6.928348 TCTGGTTCTCACCTGACTTATAAA 57.072 37.500 0.00 0.00 44.07 1.40
2313 4677 1.185618 CCCGTCTGGTTCTCACCTGA 61.186 60.000 0.00 0.00 46.11 3.86
2314 4678 1.293498 CCCGTCTGGTTCTCACCTG 59.707 63.158 0.00 0.00 44.61 4.00
2315 4679 2.584391 GCCCGTCTGGTTCTCACCT 61.584 63.158 0.00 0.00 44.61 4.00
2316 4680 2.047179 GCCCGTCTGGTTCTCACC 60.047 66.667 0.00 0.00 44.56 4.02
2317 4681 0.321653 ATTGCCCGTCTGGTTCTCAC 60.322 55.000 0.00 0.00 36.04 3.51
2318 4682 0.400213 AATTGCCCGTCTGGTTCTCA 59.600 50.000 0.00 0.00 36.04 3.27
2319 4683 1.534729 AAATTGCCCGTCTGGTTCTC 58.465 50.000 0.00 0.00 36.04 2.87
2320 4684 2.871096 TAAATTGCCCGTCTGGTTCT 57.129 45.000 0.00 0.00 36.04 3.01
2321 4685 5.570234 TTTATAAATTGCCCGTCTGGTTC 57.430 39.130 0.00 0.00 36.04 3.62
2322 4686 5.654650 TGATTTATAAATTGCCCGTCTGGTT 59.345 36.000 11.92 0.00 36.04 3.67
2323 4687 5.197451 TGATTTATAAATTGCCCGTCTGGT 58.803 37.500 11.92 0.00 36.04 4.00
2324 4688 5.766150 TGATTTATAAATTGCCCGTCTGG 57.234 39.130 11.92 0.00 37.09 3.86
2325 4689 6.638063 CACATGATTTATAAATTGCCCGTCTG 59.362 38.462 11.92 4.65 0.00 3.51
2326 4690 6.545666 TCACATGATTTATAAATTGCCCGTCT 59.454 34.615 11.92 0.00 0.00 4.18
2327 4691 6.636850 GTCACATGATTTATAAATTGCCCGTC 59.363 38.462 11.92 0.00 0.00 4.79
2328 4692 6.321181 AGTCACATGATTTATAAATTGCCCGT 59.679 34.615 11.92 3.71 0.00 5.28
2329 4693 6.738114 AGTCACATGATTTATAAATTGCCCG 58.262 36.000 11.92 2.68 0.00 6.13
2341 4705 9.685276 TCACCTGATTTATAAGTCACATGATTT 57.315 29.630 6.58 0.00 0.00 2.17
2342 4706 9.857656 ATCACCTGATTTATAAGTCACATGATT 57.142 29.630 17.86 9.09 0.00 2.57
2343 4707 9.857656 AATCACCTGATTTATAAGTCACATGAT 57.142 29.630 17.86 17.86 41.64 2.45
2358 4722 7.016072 TGTTTGGTTCCAATAAATCACCTGATT 59.984 33.333 5.06 0.00 45.91 2.57
2359 4723 6.496565 TGTTTGGTTCCAATAAATCACCTGAT 59.503 34.615 5.06 0.00 36.07 2.90
2360 4724 5.835819 TGTTTGGTTCCAATAAATCACCTGA 59.164 36.000 5.06 0.00 0.00 3.86
2361 4725 6.095432 TGTTTGGTTCCAATAAATCACCTG 57.905 37.500 5.06 0.00 0.00 4.00
2362 4726 6.700352 CATGTTTGGTTCCAATAAATCACCT 58.300 36.000 5.06 0.00 0.00 4.00
2363 4727 5.351189 GCATGTTTGGTTCCAATAAATCACC 59.649 40.000 5.06 0.00 0.00 4.02
2364 4728 5.351189 GGCATGTTTGGTTCCAATAAATCAC 59.649 40.000 5.06 0.71 0.00 3.06
2365 4729 5.486526 GGCATGTTTGGTTCCAATAAATCA 58.513 37.500 5.06 2.00 0.00 2.57
2366 4730 4.875536 GGGCATGTTTGGTTCCAATAAATC 59.124 41.667 5.06 0.00 0.00 2.17
2367 4731 4.535692 AGGGCATGTTTGGTTCCAATAAAT 59.464 37.500 5.06 0.00 0.00 1.40
2368 4732 3.906846 AGGGCATGTTTGGTTCCAATAAA 59.093 39.130 5.06 0.00 0.00 1.40
2369 4733 3.515562 AGGGCATGTTTGGTTCCAATAA 58.484 40.909 5.06 0.00 0.00 1.40
2370 4734 3.182887 AGGGCATGTTTGGTTCCAATA 57.817 42.857 5.06 0.00 0.00 1.90
2371 4735 2.028561 AGGGCATGTTTGGTTCCAAT 57.971 45.000 5.06 0.00 0.00 3.16
2372 4736 2.685106 TAGGGCATGTTTGGTTCCAA 57.315 45.000 0.00 0.00 0.00 3.53
2373 4737 2.524306 CTTAGGGCATGTTTGGTTCCA 58.476 47.619 0.00 0.00 0.00 3.53
2374 4738 1.204704 GCTTAGGGCATGTTTGGTTCC 59.795 52.381 0.00 0.00 41.35 3.62
2375 4739 2.654749 GCTTAGGGCATGTTTGGTTC 57.345 50.000 0.00 0.00 41.35 3.62
2385 4749 6.610541 CGTGAAAACGAAATGCTTAGGGCA 62.611 45.833 0.00 0.00 45.04 5.36
2386 4750 3.242518 GTGAAAACGAAATGCTTAGGGC 58.757 45.455 0.00 0.00 42.22 5.19
2387 4751 3.187637 TCGTGAAAACGAAATGCTTAGGG 59.812 43.478 0.00 0.00 39.34 3.53
2388 4752 4.148891 GTCGTGAAAACGAAATGCTTAGG 58.851 43.478 2.07 0.00 44.12 2.69
2389 4753 4.148891 GGTCGTGAAAACGAAATGCTTAG 58.851 43.478 2.07 0.00 44.12 2.18
2390 4754 3.363182 CGGTCGTGAAAACGAAATGCTTA 60.363 43.478 2.07 0.00 44.12 3.09
2391 4755 2.601266 CGGTCGTGAAAACGAAATGCTT 60.601 45.455 2.07 0.00 44.12 3.91
2392 4756 1.070175 CGGTCGTGAAAACGAAATGCT 60.070 47.619 2.07 0.00 44.12 3.79
2447 4811 2.911332 CTTTTGCCATCCATGCCGGC 62.911 60.000 22.73 22.73 46.43 6.13
2448 4812 1.142314 CTTTTGCCATCCATGCCGG 59.858 57.895 0.00 0.00 0.00 6.13
2449 4813 0.179129 GTCTTTTGCCATCCATGCCG 60.179 55.000 0.00 0.00 0.00 5.69
2450 4814 0.896923 TGTCTTTTGCCATCCATGCC 59.103 50.000 0.00 0.00 0.00 4.40
2451 4815 2.429610 AGATGTCTTTTGCCATCCATGC 59.570 45.455 0.00 0.00 38.57 4.06
2452 4816 3.952323 AGAGATGTCTTTTGCCATCCATG 59.048 43.478 0.00 0.00 38.57 3.66
2453 4817 4.246712 AGAGATGTCTTTTGCCATCCAT 57.753 40.909 0.00 0.00 38.57 3.41
2454 4818 3.726557 AGAGATGTCTTTTGCCATCCA 57.273 42.857 0.00 0.00 38.57 3.41
2455 4819 3.879892 GGTAGAGATGTCTTTTGCCATCC 59.120 47.826 0.00 0.00 38.57 3.51
2456 4820 3.879892 GGGTAGAGATGTCTTTTGCCATC 59.120 47.826 0.00 0.00 38.17 3.51
2457 4821 3.682718 CGGGTAGAGATGTCTTTTGCCAT 60.683 47.826 0.00 0.00 33.84 4.40
2458 4822 2.354704 CGGGTAGAGATGTCTTTTGCCA 60.355 50.000 0.00 0.00 33.84 4.92
2459 4823 2.280628 CGGGTAGAGATGTCTTTTGCC 58.719 52.381 0.00 0.00 33.84 4.52
2460 4824 1.666189 GCGGGTAGAGATGTCTTTTGC 59.334 52.381 0.00 0.00 33.84 3.68
2461 4825 1.927174 CGCGGGTAGAGATGTCTTTTG 59.073 52.381 0.00 0.00 33.84 2.44
2462 4826 1.739371 GCGCGGGTAGAGATGTCTTTT 60.739 52.381 8.83 0.00 33.84 2.27
2463 4827 0.179108 GCGCGGGTAGAGATGTCTTT 60.179 55.000 8.83 0.00 33.84 2.52
2464 4828 1.320344 TGCGCGGGTAGAGATGTCTT 61.320 55.000 8.83 0.00 33.84 3.01
2465 4829 1.109920 ATGCGCGGGTAGAGATGTCT 61.110 55.000 8.83 0.00 36.75 3.41
2466 4830 0.941463 CATGCGCGGGTAGAGATGTC 60.941 60.000 8.83 0.00 0.00 3.06
2467 4831 1.068083 CATGCGCGGGTAGAGATGT 59.932 57.895 8.83 0.00 0.00 3.06
2468 4832 1.665916 CCATGCGCGGGTAGAGATG 60.666 63.158 8.83 1.67 0.00 2.90
2469 4833 2.737180 CCATGCGCGGGTAGAGAT 59.263 61.111 8.83 0.00 0.00 2.75
2470 4834 4.221422 GCCATGCGCGGGTAGAGA 62.221 66.667 17.86 0.00 0.00 3.10
2471 4835 3.814615 ATGCCATGCGCGGGTAGAG 62.815 63.158 17.86 0.00 42.08 2.43
2472 4836 3.860605 ATGCCATGCGCGGGTAGA 61.861 61.111 17.86 4.71 42.08 2.59
2473 4837 3.653009 CATGCCATGCGCGGGTAG 61.653 66.667 17.86 6.02 42.08 3.18
2479 4843 4.961511 CCATGCCATGCCATGCGC 62.962 66.667 11.13 0.00 40.92 6.09
2480 4844 4.961511 GCCATGCCATGCCATGCG 62.962 66.667 11.13 6.04 40.92 4.73
2481 4845 3.177194 ATGCCATGCCATGCCATGC 62.177 57.895 11.13 7.49 40.92 4.06
2482 4846 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66
2483 4847 2.515979 CCATGCCATGCCATGCCAT 61.516 57.895 11.13 0.00 40.92 4.40
2484 4848 3.157949 CCATGCCATGCCATGCCA 61.158 61.111 11.13 0.00 40.92 4.92
2485 4849 4.619227 GCCATGCCATGCCATGCC 62.619 66.667 11.13 0.00 40.92 4.40
2486 4850 3.177194 ATGCCATGCCATGCCATGC 62.177 57.895 11.13 7.49 40.92 4.06
2487 4851 1.301637 CATGCCATGCCATGCCATG 60.302 57.895 13.50 13.50 41.71 3.66
2488 4852 3.147132 CATGCCATGCCATGCCAT 58.853 55.556 3.39 0.00 36.52 4.40
2497 4861 2.897207 CCCAAGGTGCATGCCATG 59.103 61.111 16.68 8.57 0.00 3.66
2498 4862 3.078836 GCCCAAGGTGCATGCCAT 61.079 61.111 16.68 0.80 0.00 4.40
2499 4863 3.831727 AAGCCCAAGGTGCATGCCA 62.832 57.895 16.68 0.00 0.00 4.92
2500 4864 2.586293 AAAGCCCAAGGTGCATGCC 61.586 57.895 16.68 6.42 0.00 4.40
2501 4865 1.375013 CAAAGCCCAAGGTGCATGC 60.375 57.895 11.82 11.82 0.00 4.06
2502 4866 0.899720 ATCAAAGCCCAAGGTGCATG 59.100 50.000 0.00 0.00 0.00 4.06
2503 4867 3.386716 ATCAAAGCCCAAGGTGCAT 57.613 47.368 0.00 0.00 0.00 3.96
2504 4868 4.950200 ATCAAAGCCCAAGGTGCA 57.050 50.000 0.00 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.