Multiple sequence alignment - TraesCS5A01G240600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G240600 chr5A 100.000 3117 0 0 1 3117 456746424 456743308 0.000000e+00 5757.0
1 TraesCS5A01G240600 chr5A 85.166 391 35 5 1 368 634006820 634006430 2.270000e-101 379.0
2 TraesCS5A01G240600 chr5B 89.735 1247 102 17 1833 3070 419518064 419516835 0.000000e+00 1570.0
3 TraesCS5A01G240600 chr5B 87.147 1027 58 28 810 1830 419519105 419518147 0.000000e+00 1098.0
4 TraesCS5A01G240600 chr5D 88.472 1067 61 36 801 1828 354742838 354741795 0.000000e+00 1232.0
5 TraesCS5A01G240600 chr5D 85.439 831 83 19 2312 3117 354741123 354740306 0.000000e+00 830.0
6 TraesCS5A01G240600 chr5D 89.315 496 27 10 1825 2315 354741729 354741255 1.600000e-167 599.0
7 TraesCS5A01G240600 chr5D 77.797 590 97 23 2486 3053 521721716 521721139 1.790000e-87 333.0
8 TraesCS5A01G240600 chr5D 80.172 348 60 7 2742 3088 9288493 9288154 5.160000e-63 252.0
9 TraesCS5A01G240600 chr5D 86.538 104 7 3 699 802 354743409 354743313 1.180000e-19 108.0
10 TraesCS5A01G240600 chr3B 84.202 652 59 21 1198 1830 34532335 34531709 7.440000e-166 593.0
11 TraesCS5A01G240600 chr3B 83.896 652 62 21 1198 1830 34478223 34477596 1.610000e-162 582.0
12 TraesCS5A01G240600 chr3B 83.564 651 65 18 1198 1830 764673637 764673011 3.490000e-159 571.0
13 TraesCS5A01G240600 chr3B 83.410 651 67 17 1198 1830 468136712 468136085 1.620000e-157 566.0
14 TraesCS5A01G240600 chr3B 83.306 605 60 19 1198 1783 35629538 35630120 1.280000e-143 520.0
15 TraesCS5A01G240600 chr3B 82.516 612 61 20 1198 1785 35562874 35563463 2.160000e-136 496.0
16 TraesCS5A01G240600 chr3B 95.625 160 7 0 1825 1984 34477532 34477373 1.110000e-64 257.0
17 TraesCS5A01G240600 chr3B 94.375 160 9 0 1825 1984 35563817 35563976 2.400000e-61 246.0
18 TraesCS5A01G240600 chr3B 93.750 160 10 0 1825 1984 35630474 35630633 1.120000e-59 241.0
19 TraesCS5A01G240600 chr3B 93.750 160 10 0 1825 1984 468136021 468135862 1.120000e-59 241.0
20 TraesCS5A01G240600 chr2A 83.821 649 66 18 1198 1830 306424637 306424012 5.790000e-162 580.0
21 TraesCS5A01G240600 chr2A 82.540 504 61 11 1 479 41754111 41754612 4.810000e-113 418.0
22 TraesCS5A01G240600 chr2A 82.721 463 45 12 1 432 427512042 427512500 2.270000e-101 379.0
23 TraesCS5A01G240600 chr2A 82.641 409 46 9 6 391 679924179 679924585 3.850000e-89 339.0
24 TraesCS5A01G240600 chr2A 75.719 626 113 23 2509 3107 569196008 569195395 8.510000e-71 278.0
25 TraesCS5A01G240600 chr2A 93.750 160 10 0 1825 1984 306423948 306423789 1.120000e-59 241.0
26 TraesCS5A01G240600 chr1B 84.565 609 56 18 1198 1789 566256774 566257361 1.250000e-158 569.0
27 TraesCS5A01G240600 chr1B 94.375 160 9 0 1825 1984 566257467 566257626 2.400000e-61 246.0
28 TraesCS5A01G240600 chr2B 81.804 654 68 23 1198 1830 277273996 277274619 4.640000e-138 501.0
29 TraesCS5A01G240600 chr2B 79.576 519 57 12 1 485 402683502 402682999 3.000000e-85 326.0
30 TraesCS5A01G240600 chr2B 95.000 160 8 0 1825 1984 277274683 277274842 5.160000e-63 252.0
31 TraesCS5A01G240600 chrUn 83.650 526 55 13 1 499 110777946 110778467 1.690000e-127 466.0
32 TraesCS5A01G240600 chrUn 82.700 526 59 9 1 498 143913266 143912745 3.690000e-119 438.0
33 TraesCS5A01G240600 chrUn 78.036 560 89 23 2572 3117 91540763 91541302 3.880000e-84 322.0
34 TraesCS5A01G240600 chrUn 73.571 420 69 19 2544 2941 353428195 353428594 4.220000e-24 122.0
35 TraesCS5A01G240600 chrUn 82.906 117 14 3 2544 2659 433707752 433707863 1.980000e-17 100.0
36 TraesCS5A01G240600 chr4D 83.915 516 53 12 1 490 346465514 346466025 1.690000e-127 466.0
37 TraesCS5A01G240600 chr4D 83.591 518 50 15 1 489 423699395 423698884 1.320000e-123 453.0
38 TraesCS5A01G240600 chr4D 82.342 521 60 13 1 494 63211099 63211614 1.030000e-114 424.0
39 TraesCS5A01G240600 chr6D 83.588 524 55 13 1 498 83008123 83008641 2.190000e-126 462.0
40 TraesCS5A01G240600 chr6D 78.205 156 25 6 2509 2659 439556885 439557036 1.190000e-14 91.6
41 TraesCS5A01G240600 chr6B 83.237 519 61 9 1 494 213534481 213534998 1.320000e-123 453.0
42 TraesCS5A01G240600 chr6B 73.571 420 69 19 2544 2941 707422156 707422555 4.220000e-24 122.0
43 TraesCS5A01G240600 chr6B 73.571 420 69 19 2544 2941 707761847 707762246 4.220000e-24 122.0
44 TraesCS5A01G240600 chr6B 82.906 117 14 3 2544 2659 707777192 707777303 1.980000e-17 100.0
45 TraesCS5A01G240600 chr3D 82.726 521 58 14 1 494 323293199 323293714 4.770000e-118 435.0
46 TraesCS5A01G240600 chr3D 82.474 388 59 7 2731 3117 305325022 305324643 6.440000e-87 331.0
47 TraesCS5A01G240600 chr3D 83.901 323 29 7 1 300 26821553 26821231 1.410000e-73 287.0
48 TraesCS5A01G240600 chr7A 82.081 519 56 18 1 490 664130130 664130640 2.890000e-110 409.0
49 TraesCS5A01G240600 chr7A 83.333 420 41 13 1 392 3372834 3373252 8.220000e-96 361.0
50 TraesCS5A01G240600 chr1A 84.337 415 41 8 1 391 500474639 500475053 4.880000e-103 385.0
51 TraesCS5A01G240600 chr1A 77.238 659 110 24 2487 3117 548965132 548964486 1.780000e-92 350.0
52 TraesCS5A01G240600 chr3A 78.537 629 90 29 2516 3117 423159634 423159024 3.800000e-99 372.0
53 TraesCS5A01G240600 chr1D 81.538 130 14 6 2509 2633 493815345 493815469 7.110000e-17 99.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G240600 chr5A 456743308 456746424 3116 True 5757.00 5757 100.0000 1 3117 1 chr5A.!!$R1 3116
1 TraesCS5A01G240600 chr5B 419516835 419519105 2270 True 1334.00 1570 88.4410 810 3070 2 chr5B.!!$R1 2260
2 TraesCS5A01G240600 chr5D 354740306 354743409 3103 True 692.25 1232 87.4410 699 3117 4 chr5D.!!$R3 2418
3 TraesCS5A01G240600 chr5D 521721139 521721716 577 True 333.00 333 77.7970 2486 3053 1 chr5D.!!$R2 567
4 TraesCS5A01G240600 chr3B 34531709 34532335 626 True 593.00 593 84.2020 1198 1830 1 chr3B.!!$R1 632
5 TraesCS5A01G240600 chr3B 764673011 764673637 626 True 571.00 571 83.5640 1198 1830 1 chr3B.!!$R2 632
6 TraesCS5A01G240600 chr3B 34477373 34478223 850 True 419.50 582 89.7605 1198 1984 2 chr3B.!!$R3 786
7 TraesCS5A01G240600 chr3B 468135862 468136712 850 True 403.50 566 88.5800 1198 1984 2 chr3B.!!$R4 786
8 TraesCS5A01G240600 chr3B 35629538 35630633 1095 False 380.50 520 88.5280 1198 1984 2 chr3B.!!$F2 786
9 TraesCS5A01G240600 chr3B 35562874 35563976 1102 False 371.00 496 88.4455 1198 1984 2 chr3B.!!$F1 786
10 TraesCS5A01G240600 chr2A 41754111 41754612 501 False 418.00 418 82.5400 1 479 1 chr2A.!!$F1 478
11 TraesCS5A01G240600 chr2A 306423789 306424637 848 True 410.50 580 88.7855 1198 1984 2 chr2A.!!$R2 786
12 TraesCS5A01G240600 chr2A 569195395 569196008 613 True 278.00 278 75.7190 2509 3107 1 chr2A.!!$R1 598
13 TraesCS5A01G240600 chr1B 566256774 566257626 852 False 407.50 569 89.4700 1198 1984 2 chr1B.!!$F1 786
14 TraesCS5A01G240600 chr2B 277273996 277274842 846 False 376.50 501 88.4020 1198 1984 2 chr2B.!!$F1 786
15 TraesCS5A01G240600 chr2B 402682999 402683502 503 True 326.00 326 79.5760 1 485 1 chr2B.!!$R1 484
16 TraesCS5A01G240600 chrUn 110777946 110778467 521 False 466.00 466 83.6500 1 499 1 chrUn.!!$F2 498
17 TraesCS5A01G240600 chrUn 143912745 143913266 521 True 438.00 438 82.7000 1 498 1 chrUn.!!$R1 497
18 TraesCS5A01G240600 chrUn 91540763 91541302 539 False 322.00 322 78.0360 2572 3117 1 chrUn.!!$F1 545
19 TraesCS5A01G240600 chr4D 346465514 346466025 511 False 466.00 466 83.9150 1 490 1 chr4D.!!$F2 489
20 TraesCS5A01G240600 chr4D 423698884 423699395 511 True 453.00 453 83.5910 1 489 1 chr4D.!!$R1 488
21 TraesCS5A01G240600 chr4D 63211099 63211614 515 False 424.00 424 82.3420 1 494 1 chr4D.!!$F1 493
22 TraesCS5A01G240600 chr6D 83008123 83008641 518 False 462.00 462 83.5880 1 498 1 chr6D.!!$F1 497
23 TraesCS5A01G240600 chr6B 213534481 213534998 517 False 453.00 453 83.2370 1 494 1 chr6B.!!$F1 493
24 TraesCS5A01G240600 chr3D 323293199 323293714 515 False 435.00 435 82.7260 1 494 1 chr3D.!!$F1 493
25 TraesCS5A01G240600 chr7A 664130130 664130640 510 False 409.00 409 82.0810 1 490 1 chr7A.!!$F2 489
26 TraesCS5A01G240600 chr1A 548964486 548965132 646 True 350.00 350 77.2380 2487 3117 1 chr1A.!!$R1 630
27 TraesCS5A01G240600 chr3A 423159024 423159634 610 True 372.00 372 78.5370 2516 3117 1 chr3A.!!$R1 601

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
759 798 0.319211 GCACGGGTAAAAACCAAGCC 60.319 55.0 0.0 0.0 0.0 4.35 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2185 3111 0.179045 GGCATCCACTGGCGACTTAT 60.179 55.0 0.0 0.0 41.02 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 5.395768 CCTGGAAGATGAAGAAATAGACCGT 60.396 44.000 0.00 0.00 34.07 4.83
42 44 6.600882 TGAAGAAATAGACCGTAGTTTCCT 57.399 37.500 0.00 0.00 0.00 3.36
66 68 1.542030 CGAGTGTAGAGGCTGAGTTGT 59.458 52.381 0.00 0.00 0.00 3.32
91 93 1.548357 ATGGCTCTTCTCACGGCAGT 61.548 55.000 0.00 0.00 36.64 4.40
106 108 1.476110 GGCAGTGGTGACTTGGTTACA 60.476 52.381 0.00 0.00 0.00 2.41
117 119 4.406326 TGACTTGGTTACACTGGTTACTCA 59.594 41.667 0.00 0.00 0.00 3.41
154 156 7.285172 TGTTTCTGTTACTACACCTACTACACA 59.715 37.037 0.00 0.00 0.00 3.72
289 314 1.448013 GAGTTACAGCTGGCGGACC 60.448 63.158 19.93 0.00 0.00 4.46
301 326 0.391263 GGCGGACCTCTTCACGAAAT 60.391 55.000 0.00 0.00 0.00 2.17
302 327 0.721718 GCGGACCTCTTCACGAAATG 59.278 55.000 0.00 0.00 0.00 2.32
330 355 8.173775 CAGACTAGAGCACAACATGAATTTTAG 58.826 37.037 0.00 0.00 0.00 1.85
387 423 6.955364 AGTTTAAGGGGGATGTTAGAGTTAC 58.045 40.000 0.00 0.00 0.00 2.50
392 428 5.755849 AGGGGGATGTTAGAGTTACATTTG 58.244 41.667 0.00 0.00 36.41 2.32
394 430 6.445786 AGGGGGATGTTAGAGTTACATTTGTA 59.554 38.462 0.00 0.00 36.41 2.41
405 441 8.862325 AGAGTTACATTTGTATTGACATTGGA 57.138 30.769 0.00 0.00 34.86 3.53
446 485 2.366266 TGGCCTCTGTTACGTACTTGTT 59.634 45.455 3.32 0.00 0.00 2.83
447 486 3.573538 TGGCCTCTGTTACGTACTTGTTA 59.426 43.478 3.32 0.00 0.00 2.41
448 487 4.221262 TGGCCTCTGTTACGTACTTGTTAT 59.779 41.667 3.32 0.00 0.00 1.89
449 488 5.418524 TGGCCTCTGTTACGTACTTGTTATA 59.581 40.000 3.32 0.00 0.00 0.98
450 489 6.097270 TGGCCTCTGTTACGTACTTGTTATAT 59.903 38.462 3.32 0.00 0.00 0.86
451 490 7.285172 TGGCCTCTGTTACGTACTTGTTATATA 59.715 37.037 3.32 0.00 0.00 0.86
452 491 8.137437 GGCCTCTGTTACGTACTTGTTATATAA 58.863 37.037 0.00 0.00 0.00 0.98
453 492 9.688592 GCCTCTGTTACGTACTTGTTATATAAT 57.311 33.333 0.00 0.00 0.00 1.28
456 495 9.467258 TCTGTTACGTACTTGTTATATAATGGC 57.533 33.333 0.00 0.00 0.00 4.40
457 496 9.472361 CTGTTACGTACTTGTTATATAATGGCT 57.528 33.333 0.00 0.00 0.00 4.75
458 497 9.820725 TGTTACGTACTTGTTATATAATGGCTT 57.179 29.630 0.00 0.00 0.00 4.35
461 500 8.149973 ACGTACTTGTTATATAATGGCTTTGG 57.850 34.615 0.00 0.00 0.00 3.28
462 501 7.075741 CGTACTTGTTATATAATGGCTTTGGC 58.924 38.462 0.00 0.00 37.82 4.52
479 518 7.892778 GCTTTGGCCTCTAAGATAATACTAC 57.107 40.000 3.32 0.00 0.00 2.73
480 519 7.442656 GCTTTGGCCTCTAAGATAATACTACA 58.557 38.462 3.32 0.00 0.00 2.74
481 520 8.097662 GCTTTGGCCTCTAAGATAATACTACAT 58.902 37.037 3.32 0.00 0.00 2.29
483 522 9.778741 TTTGGCCTCTAAGATAATACTACATTG 57.221 33.333 3.32 0.00 0.00 2.82
484 523 7.386851 TGGCCTCTAAGATAATACTACATTGC 58.613 38.462 3.32 0.00 0.00 3.56
485 524 7.016170 TGGCCTCTAAGATAATACTACATTGCA 59.984 37.037 3.32 0.00 0.00 4.08
486 525 8.043710 GGCCTCTAAGATAATACTACATTGCAT 58.956 37.037 0.00 0.00 0.00 3.96
497 536 8.783833 AATACTACATTGCATATTCCTAGCAG 57.216 34.615 0.00 0.00 39.72 4.24
498 537 6.425210 ACTACATTGCATATTCCTAGCAGA 57.575 37.500 0.00 0.00 39.72 4.26
499 538 6.830912 ACTACATTGCATATTCCTAGCAGAA 58.169 36.000 0.00 0.00 39.72 3.02
500 539 7.282585 ACTACATTGCATATTCCTAGCAGAAA 58.717 34.615 0.00 0.00 39.72 2.52
501 540 6.382869 ACATTGCATATTCCTAGCAGAAAC 57.617 37.500 0.00 0.00 39.72 2.78
502 541 5.300286 ACATTGCATATTCCTAGCAGAAACC 59.700 40.000 0.00 0.00 39.72 3.27
503 542 4.502105 TGCATATTCCTAGCAGAAACCA 57.498 40.909 0.00 0.00 33.75 3.67
504 543 4.454678 TGCATATTCCTAGCAGAAACCAG 58.545 43.478 0.00 0.00 33.75 4.00
505 544 4.164030 TGCATATTCCTAGCAGAAACCAGA 59.836 41.667 0.00 0.00 33.75 3.86
506 545 4.754114 GCATATTCCTAGCAGAAACCAGAG 59.246 45.833 0.00 0.00 0.00 3.35
507 546 2.770164 TTCCTAGCAGAAACCAGAGC 57.230 50.000 0.00 0.00 0.00 4.09
508 547 1.644509 TCCTAGCAGAAACCAGAGCA 58.355 50.000 0.00 0.00 0.00 4.26
509 548 1.977854 TCCTAGCAGAAACCAGAGCAA 59.022 47.619 0.00 0.00 0.00 3.91
510 549 2.573462 TCCTAGCAGAAACCAGAGCAAT 59.427 45.455 0.00 0.00 0.00 3.56
511 550 3.009473 TCCTAGCAGAAACCAGAGCAATT 59.991 43.478 0.00 0.00 0.00 2.32
512 551 3.128242 CCTAGCAGAAACCAGAGCAATTG 59.872 47.826 0.00 0.00 0.00 2.32
513 552 1.891150 AGCAGAAACCAGAGCAATTGG 59.109 47.619 7.72 0.00 41.60 3.16
514 553 1.888512 GCAGAAACCAGAGCAATTGGA 59.111 47.619 7.72 0.00 39.08 3.53
515 554 2.297033 GCAGAAACCAGAGCAATTGGAA 59.703 45.455 7.72 0.00 39.08 3.53
516 555 3.858503 GCAGAAACCAGAGCAATTGGAAC 60.859 47.826 7.72 0.00 39.08 3.62
517 556 3.318839 CAGAAACCAGAGCAATTGGAACA 59.681 43.478 7.72 0.00 39.08 3.18
518 557 3.571401 AGAAACCAGAGCAATTGGAACAG 59.429 43.478 7.72 0.00 42.39 3.16
519 558 1.915141 ACCAGAGCAATTGGAACAGG 58.085 50.000 7.72 0.00 42.39 4.00
520 559 1.425066 ACCAGAGCAATTGGAACAGGA 59.575 47.619 7.72 0.00 42.39 3.86
521 560 2.089980 CCAGAGCAATTGGAACAGGAG 58.910 52.381 7.72 0.00 42.39 3.69
522 561 2.089980 CAGAGCAATTGGAACAGGAGG 58.910 52.381 7.72 0.00 42.39 4.30
523 562 1.988107 AGAGCAATTGGAACAGGAGGA 59.012 47.619 7.72 0.00 42.39 3.71
524 563 2.026449 AGAGCAATTGGAACAGGAGGAG 60.026 50.000 7.72 0.00 42.39 3.69
525 564 0.813821 GCAATTGGAACAGGAGGAGC 59.186 55.000 7.72 0.00 42.39 4.70
526 565 1.887956 GCAATTGGAACAGGAGGAGCA 60.888 52.381 7.72 0.00 42.39 4.26
527 566 2.517959 CAATTGGAACAGGAGGAGCAA 58.482 47.619 0.00 0.00 42.39 3.91
528 567 2.206576 ATTGGAACAGGAGGAGCAAC 57.793 50.000 0.00 0.00 42.39 4.17
529 568 1.140312 TTGGAACAGGAGGAGCAACT 58.860 50.000 0.00 0.00 42.39 3.16
530 569 1.140312 TGGAACAGGAGGAGCAACTT 58.860 50.000 0.00 0.00 0.00 2.66
531 570 1.494721 TGGAACAGGAGGAGCAACTTT 59.505 47.619 0.00 0.00 0.00 2.66
532 571 2.708861 TGGAACAGGAGGAGCAACTTTA 59.291 45.455 0.00 0.00 0.00 1.85
533 572 3.137544 TGGAACAGGAGGAGCAACTTTAA 59.862 43.478 0.00 0.00 0.00 1.52
534 573 3.753797 GGAACAGGAGGAGCAACTTTAAG 59.246 47.826 0.00 0.00 0.00 1.85
535 574 2.784347 ACAGGAGGAGCAACTTTAAGC 58.216 47.619 0.00 0.00 0.00 3.09
536 575 2.373502 ACAGGAGGAGCAACTTTAAGCT 59.626 45.455 0.00 0.00 45.25 3.74
537 576 3.181439 ACAGGAGGAGCAACTTTAAGCTT 60.181 43.478 3.48 3.48 42.04 3.74
538 577 4.041691 ACAGGAGGAGCAACTTTAAGCTTA 59.958 41.667 0.86 0.86 42.04 3.09
539 578 5.189180 CAGGAGGAGCAACTTTAAGCTTAT 58.811 41.667 7.08 0.00 42.04 1.73
540 579 5.649831 CAGGAGGAGCAACTTTAAGCTTATT 59.350 40.000 7.08 0.00 42.04 1.40
541 580 5.649831 AGGAGGAGCAACTTTAAGCTTATTG 59.350 40.000 7.08 10.16 42.04 1.90
542 581 5.163612 GGAGGAGCAACTTTAAGCTTATTGG 60.164 44.000 16.30 8.98 42.04 3.16
543 582 5.325239 AGGAGCAACTTTAAGCTTATTGGT 58.675 37.500 18.21 18.21 42.04 3.67
544 583 6.481643 AGGAGCAACTTTAAGCTTATTGGTA 58.518 36.000 18.19 0.00 42.04 3.25
545 584 6.599638 AGGAGCAACTTTAAGCTTATTGGTAG 59.400 38.462 18.19 9.49 42.04 3.18
546 585 6.598064 GGAGCAACTTTAAGCTTATTGGTAGA 59.402 38.462 18.19 0.00 42.04 2.59
547 586 7.379098 AGCAACTTTAAGCTTATTGGTAGAC 57.621 36.000 17.19 3.99 38.01 2.59
548 587 6.374613 AGCAACTTTAAGCTTATTGGTAGACC 59.625 38.462 17.19 0.00 38.01 3.85
549 588 6.150474 GCAACTTTAAGCTTATTGGTAGACCA 59.850 38.462 16.30 0.00 45.94 4.02
563 602 6.585695 TGGTAGACCAGTTACTTCAAGTAG 57.414 41.667 0.00 0.00 42.01 2.57
564 603 5.047519 TGGTAGACCAGTTACTTCAAGTAGC 60.048 44.000 3.26 3.26 42.01 3.58
565 604 5.047519 GGTAGACCAGTTACTTCAAGTAGCA 60.048 44.000 13.33 0.00 34.81 3.49
566 605 5.746990 AGACCAGTTACTTCAAGTAGCAT 57.253 39.130 13.33 0.00 34.81 3.79
567 606 6.852420 AGACCAGTTACTTCAAGTAGCATA 57.148 37.500 13.33 0.00 34.81 3.14
568 607 7.241042 AGACCAGTTACTTCAAGTAGCATAA 57.759 36.000 13.33 0.00 34.81 1.90
569 608 7.324178 AGACCAGTTACTTCAAGTAGCATAAG 58.676 38.462 13.33 2.31 34.81 1.73
570 609 7.178628 AGACCAGTTACTTCAAGTAGCATAAGA 59.821 37.037 13.33 0.00 34.81 2.10
571 610 7.097834 ACCAGTTACTTCAAGTAGCATAAGAC 58.902 38.462 13.33 0.31 34.81 3.01
572 611 7.097192 CCAGTTACTTCAAGTAGCATAAGACA 58.903 38.462 13.33 0.00 34.81 3.41
573 612 7.766278 CCAGTTACTTCAAGTAGCATAAGACAT 59.234 37.037 13.33 0.00 34.81 3.06
574 613 8.812329 CAGTTACTTCAAGTAGCATAAGACATC 58.188 37.037 13.33 0.00 34.81 3.06
575 614 8.531982 AGTTACTTCAAGTAGCATAAGACATCA 58.468 33.333 13.33 0.00 34.81 3.07
576 615 9.319143 GTTACTTCAAGTAGCATAAGACATCAT 57.681 33.333 6.54 0.00 32.94 2.45
577 616 9.890629 TTACTTCAAGTAGCATAAGACATCATT 57.109 29.630 0.00 0.00 31.47 2.57
578 617 8.798859 ACTTCAAGTAGCATAAGACATCATTT 57.201 30.769 0.00 0.00 0.00 2.32
579 618 8.887717 ACTTCAAGTAGCATAAGACATCATTTC 58.112 33.333 0.00 0.00 0.00 2.17
580 619 9.107177 CTTCAAGTAGCATAAGACATCATTTCT 57.893 33.333 0.00 0.00 0.00 2.52
581 620 9.453572 TTCAAGTAGCATAAGACATCATTTCTT 57.546 29.630 0.00 0.00 37.14 2.52
607 646 6.176975 TGTATTTCTTTGGTATTGCAGACG 57.823 37.500 0.00 0.00 0.00 4.18
608 647 3.552604 TTTCTTTGGTATTGCAGACGC 57.447 42.857 0.00 0.00 39.24 5.19
620 659 3.808466 TGCAGACGCAGATAGATTTCT 57.192 42.857 0.00 0.00 45.36 2.52
621 660 3.711086 TGCAGACGCAGATAGATTTCTC 58.289 45.455 0.00 0.00 45.36 2.87
622 661 3.382865 TGCAGACGCAGATAGATTTCTCT 59.617 43.478 0.00 0.00 45.36 3.10
623 662 4.580580 TGCAGACGCAGATAGATTTCTCTA 59.419 41.667 0.00 0.00 45.36 2.43
624 663 4.915085 GCAGACGCAGATAGATTTCTCTAC 59.085 45.833 0.00 0.00 35.99 2.59
625 664 5.143660 CAGACGCAGATAGATTTCTCTACG 58.856 45.833 0.00 0.00 36.81 3.51
626 665 4.214545 AGACGCAGATAGATTTCTCTACGG 59.785 45.833 0.00 0.00 36.81 4.02
627 666 4.135306 ACGCAGATAGATTTCTCTACGGA 58.865 43.478 0.00 0.00 36.81 4.69
628 667 4.023878 ACGCAGATAGATTTCTCTACGGAC 60.024 45.833 0.00 0.00 36.81 4.79
629 668 4.023963 CGCAGATAGATTTCTCTACGGACA 60.024 45.833 0.00 0.00 36.81 4.02
630 669 5.216648 GCAGATAGATTTCTCTACGGACAC 58.783 45.833 0.00 0.00 36.81 3.67
631 670 5.221067 GCAGATAGATTTCTCTACGGACACA 60.221 44.000 0.00 0.00 36.81 3.72
632 671 6.515862 GCAGATAGATTTCTCTACGGACACAT 60.516 42.308 0.00 0.00 36.81 3.21
633 672 7.081349 CAGATAGATTTCTCTACGGACACATC 58.919 42.308 0.00 0.00 36.81 3.06
634 673 6.773200 AGATAGATTTCTCTACGGACACATCA 59.227 38.462 0.00 0.00 36.81 3.07
635 674 5.860941 AGATTTCTCTACGGACACATCAT 57.139 39.130 0.00 0.00 0.00 2.45
636 675 6.227298 AGATTTCTCTACGGACACATCATT 57.773 37.500 0.00 0.00 0.00 2.57
637 676 6.644347 AGATTTCTCTACGGACACATCATTT 58.356 36.000 0.00 0.00 0.00 2.32
638 677 7.782049 AGATTTCTCTACGGACACATCATTTA 58.218 34.615 0.00 0.00 0.00 1.40
639 678 7.707035 AGATTTCTCTACGGACACATCATTTAC 59.293 37.037 0.00 0.00 0.00 2.01
640 679 6.525578 TTCTCTACGGACACATCATTTACT 57.474 37.500 0.00 0.00 0.00 2.24
641 680 6.525578 TCTCTACGGACACATCATTTACTT 57.474 37.500 0.00 0.00 0.00 2.24
642 681 6.330278 TCTCTACGGACACATCATTTACTTG 58.670 40.000 0.00 0.00 0.00 3.16
643 682 5.416083 TCTACGGACACATCATTTACTTGG 58.584 41.667 0.00 0.00 0.00 3.61
644 683 4.015872 ACGGACACATCATTTACTTGGT 57.984 40.909 0.00 0.00 0.00 3.67
645 684 5.155278 ACGGACACATCATTTACTTGGTA 57.845 39.130 0.00 0.00 0.00 3.25
646 685 5.741011 ACGGACACATCATTTACTTGGTAT 58.259 37.500 0.00 0.00 0.00 2.73
647 686 5.815740 ACGGACACATCATTTACTTGGTATC 59.184 40.000 0.00 0.00 0.00 2.24
648 687 6.049149 CGGACACATCATTTACTTGGTATCT 58.951 40.000 0.00 0.00 0.00 1.98
649 688 7.147794 ACGGACACATCATTTACTTGGTATCTA 60.148 37.037 0.00 0.00 0.00 1.98
650 689 7.872993 CGGACACATCATTTACTTGGTATCTAT 59.127 37.037 0.00 0.00 0.00 1.98
686 725 9.628746 TTCTTTTGAAAAATAAACTATACGGGC 57.371 29.630 0.00 0.00 35.17 6.13
687 726 8.794553 TCTTTTGAAAAATAAACTATACGGGCA 58.205 29.630 0.00 0.00 0.00 5.36
688 727 8.745464 TTTTGAAAAATAAACTATACGGGCAC 57.255 30.769 0.00 0.00 0.00 5.01
689 728 7.450124 TTGAAAAATAAACTATACGGGCACA 57.550 32.000 0.00 0.00 0.00 4.57
690 729 7.633193 TGAAAAATAAACTATACGGGCACAT 57.367 32.000 0.00 0.00 0.00 3.21
691 730 8.057536 TGAAAAATAAACTATACGGGCACATT 57.942 30.769 0.00 0.00 0.00 2.71
692 731 7.971168 TGAAAAATAAACTATACGGGCACATTG 59.029 33.333 0.00 0.00 0.00 2.82
693 732 7.399245 AAAATAAACTATACGGGCACATTGT 57.601 32.000 0.00 0.00 0.00 2.71
694 733 7.399245 AAATAAACTATACGGGCACATTGTT 57.601 32.000 0.00 0.00 0.00 2.83
695 734 8.508883 AAATAAACTATACGGGCACATTGTTA 57.491 30.769 0.00 0.00 0.00 2.41
696 735 8.685838 AATAAACTATACGGGCACATTGTTAT 57.314 30.769 0.00 0.00 0.00 1.89
697 736 8.685838 ATAAACTATACGGGCACATTGTTATT 57.314 30.769 0.00 0.00 0.00 1.40
718 757 9.209175 GTTATTGAAGGAGGCAGTATATTGTAG 57.791 37.037 0.00 0.00 0.00 2.74
719 758 5.808366 TGAAGGAGGCAGTATATTGTAGG 57.192 43.478 0.00 0.00 0.00 3.18
720 759 4.593206 TGAAGGAGGCAGTATATTGTAGGG 59.407 45.833 0.00 0.00 0.00 3.53
721 760 4.214993 AGGAGGCAGTATATTGTAGGGT 57.785 45.455 0.00 0.00 0.00 4.34
722 761 4.567857 AGGAGGCAGTATATTGTAGGGTT 58.432 43.478 0.00 0.00 0.00 4.11
723 762 4.975794 AGGAGGCAGTATATTGTAGGGTTT 59.024 41.667 0.00 0.00 0.00 3.27
724 763 5.063880 GGAGGCAGTATATTGTAGGGTTTG 58.936 45.833 0.00 0.00 0.00 2.93
728 767 4.820173 GCAGTATATTGTAGGGTTTGGTCC 59.180 45.833 0.00 0.00 0.00 4.46
732 771 1.822425 TTGTAGGGTTTGGTCCTCCA 58.178 50.000 0.00 0.00 42.66 3.86
739 778 1.145119 GGTTTGGTCCTCCAGTCCTTT 59.855 52.381 0.00 0.00 45.22 3.11
754 793 1.682323 TCCTTTGCACGGGTAAAAACC 59.318 47.619 1.73 0.00 0.00 3.27
758 797 0.386113 TGCACGGGTAAAAACCAAGC 59.614 50.000 0.00 0.00 0.00 4.01
759 798 0.319211 GCACGGGTAAAAACCAAGCC 60.319 55.000 0.00 0.00 0.00 4.35
761 800 4.979204 GGGTAAAAACCAAGCCGC 57.021 55.556 0.00 0.00 0.00 6.53
767 806 2.082629 AAAAACCAAGCCGCCTTCCG 62.083 55.000 0.00 0.00 0.00 4.30
808 1324 0.472925 TGTGCACCAGGTCCTTCCTA 60.473 55.000 15.69 0.00 46.24 2.94
840 1356 6.644347 ACAGTGAGTAGCTGCTGTTAATTAT 58.356 36.000 9.82 0.00 38.86 1.28
841 1357 7.782049 ACAGTGAGTAGCTGCTGTTAATTATA 58.218 34.615 9.82 0.00 38.86 0.98
852 1368 9.344309 GCTGCTGTTAATTATACTAGTAGTAGC 57.656 37.037 15.08 11.44 33.66 3.58
864 1380 6.173427 ACTAGTAGTAGCTGGTAGTACTCC 57.827 45.833 28.22 8.19 42.16 3.85
865 1381 5.904750 ACTAGTAGTAGCTGGTAGTACTCCT 59.095 44.000 28.22 16.58 42.16 3.69
1001 1537 4.462280 CCACTCCGGCCCCGTAAC 62.462 72.222 5.93 0.00 37.81 2.50
1098 1636 4.632327 ACAGGAGAGAAGGAAGAAAAGG 57.368 45.455 0.00 0.00 0.00 3.11
1218 1760 1.079750 GCCGACTTGTCAGTCTCCC 60.080 63.158 1.59 0.00 46.67 4.30
1236 1794 1.222113 CGCTCCCTTCCTTCCTTCC 59.778 63.158 0.00 0.00 0.00 3.46
1237 1795 1.553690 CGCTCCCTTCCTTCCTTCCA 61.554 60.000 0.00 0.00 0.00 3.53
1264 1822 3.175240 CAGCGCTGACCGTTCGAG 61.175 66.667 33.66 0.00 39.71 4.04
1267 1825 4.421479 CGCTGACCGTTCGAGGCT 62.421 66.667 0.00 0.00 33.69 4.58
1284 1842 4.075854 TGTGCTGCCGCGTATGGA 62.076 61.111 4.92 0.00 39.65 3.41
1285 1843 2.817834 GTGCTGCCGCGTATGGAA 60.818 61.111 4.92 0.00 39.65 3.53
1286 1844 2.180204 GTGCTGCCGCGTATGGAAT 61.180 57.895 4.92 0.00 39.65 3.01
1302 1860 5.690464 ATGGAATAGTTCTTCTGCTCACT 57.310 39.130 0.00 0.00 0.00 3.41
1306 1864 5.810074 GGAATAGTTCTTCTGCTCACTCTTC 59.190 44.000 0.00 0.00 0.00 2.87
1310 1868 0.739112 CTTCTGCTCACTCTTCGGCC 60.739 60.000 0.00 0.00 0.00 6.13
1311 1869 1.188219 TTCTGCTCACTCTTCGGCCT 61.188 55.000 0.00 0.00 0.00 5.19
1314 1872 1.188219 TGCTCACTCTTCGGCCTCTT 61.188 55.000 0.00 0.00 0.00 2.85
1352 1910 1.972027 GCGAAGAAGGCGAAGAAGGC 61.972 60.000 0.00 0.00 0.00 4.35
1382 1940 3.237741 GGCGGAGGAGATGGAGGG 61.238 72.222 0.00 0.00 0.00 4.30
1392 1950 1.884926 GATGGAGGGCTTCTTCGCG 60.885 63.158 0.00 0.00 0.00 5.87
1437 1995 1.510480 GCTTCGCTGCCAAGTGAGTT 61.510 55.000 8.74 0.00 43.62 3.01
1439 1997 0.106708 TTCGCTGCCAAGTGAGTTCT 59.893 50.000 0.00 0.00 43.62 3.01
1441 1999 1.071605 CGCTGCCAAGTGAGTTCTAC 58.928 55.000 0.00 0.00 35.86 2.59
1454 2012 0.248215 GTTCTACCGCACATGCATGC 60.248 55.000 26.53 14.55 42.21 4.06
1515 2087 2.084546 GCCGTGGATTTATATGGGAGC 58.915 52.381 0.00 0.00 0.00 4.70
1563 2135 1.635487 TGGGCCTGTAAATTCTGCTCT 59.365 47.619 4.53 0.00 0.00 4.09
1564 2136 2.293170 GGGCCTGTAAATTCTGCTCTC 58.707 52.381 0.84 0.00 0.00 3.20
1581 2153 2.025155 TCTCGAGTAACATGAGGCCTC 58.975 52.381 26.78 26.78 0.00 4.70
1582 2154 2.028130 CTCGAGTAACATGAGGCCTCT 58.972 52.381 32.28 15.62 0.00 3.69
1583 2155 1.751351 TCGAGTAACATGAGGCCTCTG 59.249 52.381 32.28 26.91 0.00 3.35
1589 2164 1.524165 CATGAGGCCTCTGCTGCTC 60.524 63.158 32.28 5.83 37.74 4.26
1597 2172 1.942677 CCTCTGCTGCTCAAGATCTG 58.057 55.000 0.00 0.00 0.00 2.90
1600 2175 0.464013 CTGCTGCTCAAGATCTGGGG 60.464 60.000 0.00 0.00 0.00 4.96
1789 2377 6.477053 ACACATATAGACTGTTCTGAGCAT 57.523 37.500 0.00 0.00 32.75 3.79
1790 2378 7.588497 ACACATATAGACTGTTCTGAGCATA 57.412 36.000 0.00 0.00 32.75 3.14
1792 2380 7.068716 ACACATATAGACTGTTCTGAGCATACA 59.931 37.037 0.00 0.00 32.75 2.29
1794 2382 5.921962 ATAGACTGTTCTGAGCATACACA 57.078 39.130 0.00 0.00 32.75 3.72
1796 2384 3.321968 AGACTGTTCTGAGCATACACACA 59.678 43.478 0.00 0.00 0.00 3.72
1979 2902 2.512515 GCAGACGCTCCCATGGAC 60.513 66.667 15.22 0.78 34.30 4.02
2001 2924 2.880648 GGTACGAGTGGGTCCGAC 59.119 66.667 0.00 0.00 0.00 4.79
2053 2976 0.601311 AGCCAGTCAAGCGTCAGAAC 60.601 55.000 0.00 0.00 34.64 3.01
2054 2977 0.601311 GCCAGTCAAGCGTCAGAACT 60.601 55.000 0.00 0.00 0.00 3.01
2056 2979 1.269778 CCAGTCAAGCGTCAGAACTCA 60.270 52.381 0.00 0.00 0.00 3.41
2058 2981 1.957177 AGTCAAGCGTCAGAACTCAGA 59.043 47.619 0.00 0.00 0.00 3.27
2059 2982 2.362397 AGTCAAGCGTCAGAACTCAGAA 59.638 45.455 0.00 0.00 0.00 3.02
2060 2983 2.728839 GTCAAGCGTCAGAACTCAGAAG 59.271 50.000 0.00 0.00 0.00 2.85
2061 2984 1.458827 CAAGCGTCAGAACTCAGAAGC 59.541 52.381 2.58 2.58 37.20 3.86
2062 2985 0.037790 AGCGTCAGAACTCAGAAGCC 60.038 55.000 6.45 0.00 37.52 4.35
2063 2986 1.016653 GCGTCAGAACTCAGAAGCCC 61.017 60.000 0.00 0.00 32.57 5.19
2064 2987 0.734253 CGTCAGAACTCAGAAGCCCG 60.734 60.000 0.00 0.00 0.00 6.13
2065 2988 1.016653 GTCAGAACTCAGAAGCCCGC 61.017 60.000 0.00 0.00 0.00 6.13
2066 2989 1.004560 CAGAACTCAGAAGCCCGCA 60.005 57.895 0.00 0.00 0.00 5.69
2067 2990 1.004440 AGAACTCAGAAGCCCGCAC 60.004 57.895 0.00 0.00 0.00 5.34
2068 2991 1.301716 GAACTCAGAAGCCCGCACA 60.302 57.895 0.00 0.00 0.00 4.57
2069 2992 1.294659 GAACTCAGAAGCCCGCACAG 61.295 60.000 0.00 0.00 0.00 3.66
2102 3025 5.125739 ACCACGTTGTGTCCTTTTTAATCAA 59.874 36.000 0.00 0.00 0.00 2.57
2111 3034 8.825745 TGTGTCCTTTTTAATCAATTCTTTTGC 58.174 29.630 0.00 0.00 0.00 3.68
2131 3054 2.095059 GCAGTTACCCTGTCATGCTTTG 60.095 50.000 0.00 0.00 43.55 2.77
2185 3111 7.498900 CCTAATCATGTAAAAGCTCACCATGTA 59.501 37.037 12.50 4.21 35.54 2.29
2227 3153 3.926616 TGTTTCACCTGTAGCTAGCTTC 58.073 45.455 24.88 18.92 0.00 3.86
2247 3173 5.503720 GCTTCGCTTTTATTAACTTGTCGTC 59.496 40.000 0.00 0.00 0.00 4.20
2307 3233 4.092771 TCTGTGTACATTGTCTCGTAGC 57.907 45.455 0.00 0.00 0.00 3.58
2310 3236 3.179830 GTGTACATTGTCTCGTAGCAGG 58.820 50.000 0.00 0.00 0.00 4.85
2387 3457 5.580297 CAGCCTACTTTCAAAGCAAAAACAA 59.420 36.000 0.00 0.00 0.00 2.83
2396 3466 6.389830 TCAAAGCAAAAACAATCAGAGCTA 57.610 33.333 0.00 0.00 0.00 3.32
2418 3492 0.107081 ACAAATCCGACCCGTGAACA 59.893 50.000 0.00 0.00 0.00 3.18
2420 3494 1.810151 CAAATCCGACCCGTGAACATT 59.190 47.619 0.00 0.00 0.00 2.71
2422 3496 1.734163 ATCCGACCCGTGAACATTTC 58.266 50.000 0.00 0.00 0.00 2.17
2429 3503 2.298163 ACCCGTGAACATTTCTAGACGT 59.702 45.455 0.00 0.00 0.00 4.34
2441 3515 1.210234 TCTAGACGTACCCGGACATGA 59.790 52.381 0.73 0.00 38.78 3.07
2452 3526 3.280920 GGACATGATCCGAGACAGC 57.719 57.895 0.00 0.00 37.88 4.40
2454 3528 1.211818 GACATGATCCGAGACAGCGC 61.212 60.000 0.00 0.00 0.00 5.92
2507 3581 5.302360 TCACACTGCTCGTATTAAAACCTT 58.698 37.500 0.00 0.00 0.00 3.50
2549 3627 9.911980 GATCATACACATGAATCGCATAAATAG 57.088 33.333 0.00 0.00 44.27 1.73
2646 3734 8.553459 AACTCCTTGTTTCTATTATGTGTCTG 57.447 34.615 0.00 0.00 34.84 3.51
2673 3778 2.606795 GCTCCACAAGCGCAAACATTTA 60.607 45.455 11.47 0.00 42.21 1.40
2678 3783 3.853671 CACAAGCGCAAACATTTAGATCC 59.146 43.478 11.47 0.00 0.00 3.36
2692 3797 6.210784 ACATTTAGATCCCGAAGATTCCGATA 59.789 38.462 0.00 0.00 34.42 2.92
2800 3910 0.038166 TGCCCCTTCACCTTCATCAC 59.962 55.000 0.00 0.00 0.00 3.06
2830 3940 7.062022 CGACAATCATATTGTGCAAAATGACAA 59.938 33.333 12.62 0.00 31.96 3.18
2925 4039 2.514824 GCACTCCGAATGCCCTCC 60.515 66.667 0.00 0.00 37.08 4.30
2964 4079 7.676947 AGGTACTTCTTGCACTATTGTAAAGA 58.323 34.615 0.00 2.01 27.25 2.52
3011 4129 4.426416 TCGTATATGGTCTTCACAAACGG 58.574 43.478 0.00 0.00 31.76 4.44
3036 4154 7.092399 GGAGCCCACTAAGGATATATACCATTT 60.092 40.741 0.00 0.00 41.22 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 6.014840 ACAGGAAACTACGGTCTATTTCTTCA 60.015 38.462 9.93 0.00 40.21 3.02
34 35 4.458295 CCTCTACACTCGAACAGGAAACTA 59.542 45.833 0.00 0.00 40.21 2.24
42 44 1.813178 CTCAGCCTCTACACTCGAACA 59.187 52.381 0.00 0.00 0.00 3.18
71 73 1.078918 TGCCGTGAGAAGAGCCATG 60.079 57.895 0.00 0.00 0.00 3.66
91 93 1.841277 ACCAGTGTAACCAAGTCACCA 59.159 47.619 0.00 0.00 37.80 4.17
106 108 4.827284 CACCAAAATCCTTGAGTAACCAGT 59.173 41.667 0.00 0.00 0.00 4.00
117 119 7.558444 TGTAGTAACAGAAACACCAAAATCCTT 59.442 33.333 0.00 0.00 0.00 3.36
154 156 3.070159 AGCACATGTACTGTCTGACAAGT 59.930 43.478 12.16 13.46 35.29 3.16
289 314 2.693069 AGTCTGGCATTTCGTGAAGAG 58.307 47.619 0.00 0.00 0.00 2.85
301 326 1.047801 TGTTGTGCTCTAGTCTGGCA 58.952 50.000 0.00 0.00 0.00 4.92
302 327 2.005451 CATGTTGTGCTCTAGTCTGGC 58.995 52.381 0.00 0.00 0.00 4.85
330 355 2.565841 ACAACACTGAGTTTGGAGAGC 58.434 47.619 10.61 0.00 38.74 4.09
387 423 8.084073 ACAGAAAGTCCAATGTCAATACAAATG 58.916 33.333 0.00 0.00 39.58 2.32
400 436 8.306761 CAAAGGCTAAAATACAGAAAGTCCAAT 58.693 33.333 0.00 0.00 0.00 3.16
403 439 6.621613 CCAAAGGCTAAAATACAGAAAGTCC 58.378 40.000 0.00 0.00 0.00 3.85
405 441 6.025749 GCCAAAGGCTAAAATACAGAAAGT 57.974 37.500 0.00 0.00 46.69 2.66
432 468 9.820725 AAGCCATTATATAACAAGTACGTAACA 57.179 29.630 0.00 0.00 0.00 2.41
437 475 7.075741 GCCAAAGCCATTATATAACAAGTACG 58.924 38.462 0.00 0.00 0.00 3.67
455 494 7.442656 TGTAGTATTATCTTAGAGGCCAAAGC 58.557 38.462 5.01 0.00 38.76 3.51
457 496 9.778741 CAATGTAGTATTATCTTAGAGGCCAAA 57.221 33.333 5.01 0.00 0.00 3.28
458 497 7.878127 GCAATGTAGTATTATCTTAGAGGCCAA 59.122 37.037 5.01 0.00 0.00 4.52
459 498 7.016170 TGCAATGTAGTATTATCTTAGAGGCCA 59.984 37.037 5.01 0.00 0.00 5.36
460 499 7.386851 TGCAATGTAGTATTATCTTAGAGGCC 58.613 38.462 0.00 0.00 0.00 5.19
471 510 9.875691 CTGCTAGGAATATGCAATGTAGTATTA 57.124 33.333 0.00 0.00 36.22 0.98
472 511 8.597167 TCTGCTAGGAATATGCAATGTAGTATT 58.403 33.333 0.00 0.00 36.22 1.89
473 512 8.138928 TCTGCTAGGAATATGCAATGTAGTAT 57.861 34.615 0.00 0.00 36.22 2.12
474 513 7.539034 TCTGCTAGGAATATGCAATGTAGTA 57.461 36.000 0.00 0.00 36.22 1.82
475 514 6.425210 TCTGCTAGGAATATGCAATGTAGT 57.575 37.500 0.00 0.00 36.22 2.73
476 515 7.308229 GGTTTCTGCTAGGAATATGCAATGTAG 60.308 40.741 0.00 0.00 36.22 2.74
477 516 6.486657 GGTTTCTGCTAGGAATATGCAATGTA 59.513 38.462 0.00 0.00 36.22 2.29
478 517 5.300286 GGTTTCTGCTAGGAATATGCAATGT 59.700 40.000 0.00 0.00 36.22 2.71
479 518 5.300034 TGGTTTCTGCTAGGAATATGCAATG 59.700 40.000 0.00 0.00 36.22 2.82
480 519 5.448654 TGGTTTCTGCTAGGAATATGCAAT 58.551 37.500 0.00 0.00 36.22 3.56
481 520 4.854173 TGGTTTCTGCTAGGAATATGCAA 58.146 39.130 0.00 0.00 36.22 4.08
482 521 4.164030 TCTGGTTTCTGCTAGGAATATGCA 59.836 41.667 0.00 0.00 35.30 3.96
483 522 4.708177 TCTGGTTTCTGCTAGGAATATGC 58.292 43.478 0.00 0.00 0.00 3.14
484 523 4.754114 GCTCTGGTTTCTGCTAGGAATATG 59.246 45.833 0.00 0.00 0.00 1.78
485 524 4.410228 TGCTCTGGTTTCTGCTAGGAATAT 59.590 41.667 0.00 0.00 0.00 1.28
486 525 3.774766 TGCTCTGGTTTCTGCTAGGAATA 59.225 43.478 0.00 0.00 0.00 1.75
487 526 2.573462 TGCTCTGGTTTCTGCTAGGAAT 59.427 45.455 0.00 0.00 0.00 3.01
488 527 1.977854 TGCTCTGGTTTCTGCTAGGAA 59.022 47.619 0.00 0.00 0.00 3.36
489 528 1.644509 TGCTCTGGTTTCTGCTAGGA 58.355 50.000 0.00 0.00 0.00 2.94
490 529 2.479566 TTGCTCTGGTTTCTGCTAGG 57.520 50.000 0.00 0.00 0.00 3.02
491 530 3.128242 CCAATTGCTCTGGTTTCTGCTAG 59.872 47.826 0.00 0.00 0.00 3.42
492 531 3.084039 CCAATTGCTCTGGTTTCTGCTA 58.916 45.455 0.00 0.00 0.00 3.49
493 532 1.891150 CCAATTGCTCTGGTTTCTGCT 59.109 47.619 0.00 0.00 0.00 4.24
494 533 1.888512 TCCAATTGCTCTGGTTTCTGC 59.111 47.619 0.00 0.00 35.30 4.26
495 534 3.318839 TGTTCCAATTGCTCTGGTTTCTG 59.681 43.478 0.00 0.00 35.30 3.02
496 535 3.565307 TGTTCCAATTGCTCTGGTTTCT 58.435 40.909 0.00 0.00 35.30 2.52
497 536 3.305608 CCTGTTCCAATTGCTCTGGTTTC 60.306 47.826 0.00 0.00 35.30 2.78
498 537 2.629617 CCTGTTCCAATTGCTCTGGTTT 59.370 45.455 0.00 0.00 35.30 3.27
499 538 2.158475 TCCTGTTCCAATTGCTCTGGTT 60.158 45.455 0.00 0.00 35.30 3.67
500 539 1.425066 TCCTGTTCCAATTGCTCTGGT 59.575 47.619 0.00 0.00 35.30 4.00
501 540 2.089980 CTCCTGTTCCAATTGCTCTGG 58.910 52.381 0.00 6.20 35.05 3.86
502 541 2.089980 CCTCCTGTTCCAATTGCTCTG 58.910 52.381 0.00 0.00 0.00 3.35
503 542 1.988107 TCCTCCTGTTCCAATTGCTCT 59.012 47.619 0.00 0.00 0.00 4.09
504 543 2.363683 CTCCTCCTGTTCCAATTGCTC 58.636 52.381 0.00 0.00 0.00 4.26
505 544 1.615384 GCTCCTCCTGTTCCAATTGCT 60.615 52.381 0.00 0.00 0.00 3.91
506 545 0.813821 GCTCCTCCTGTTCCAATTGC 59.186 55.000 0.00 0.00 0.00 3.56
507 546 2.205022 TGCTCCTCCTGTTCCAATTG 57.795 50.000 0.00 0.00 0.00 2.32
508 547 2.108952 AGTTGCTCCTCCTGTTCCAATT 59.891 45.455 0.00 0.00 0.00 2.32
509 548 1.707427 AGTTGCTCCTCCTGTTCCAAT 59.293 47.619 0.00 0.00 0.00 3.16
510 549 1.140312 AGTTGCTCCTCCTGTTCCAA 58.860 50.000 0.00 0.00 0.00 3.53
511 550 1.140312 AAGTTGCTCCTCCTGTTCCA 58.860 50.000 0.00 0.00 0.00 3.53
512 551 2.278332 AAAGTTGCTCCTCCTGTTCC 57.722 50.000 0.00 0.00 0.00 3.62
513 552 3.189495 GCTTAAAGTTGCTCCTCCTGTTC 59.811 47.826 0.00 0.00 0.00 3.18
514 553 3.149981 GCTTAAAGTTGCTCCTCCTGTT 58.850 45.455 0.00 0.00 0.00 3.16
515 554 2.373502 AGCTTAAAGTTGCTCCTCCTGT 59.626 45.455 0.00 0.00 33.90 4.00
516 555 3.064900 AGCTTAAAGTTGCTCCTCCTG 57.935 47.619 0.00 0.00 33.90 3.86
517 556 3.797559 AAGCTTAAAGTTGCTCCTCCT 57.202 42.857 0.00 0.00 38.75 3.69
518 557 5.163612 CCAATAAGCTTAAAGTTGCTCCTCC 60.164 44.000 10.85 0.00 38.75 4.30
519 558 5.416013 ACCAATAAGCTTAAAGTTGCTCCTC 59.584 40.000 10.85 0.00 38.75 3.71
520 559 5.325239 ACCAATAAGCTTAAAGTTGCTCCT 58.675 37.500 10.85 0.00 38.75 3.69
521 560 5.644977 ACCAATAAGCTTAAAGTTGCTCC 57.355 39.130 10.85 0.00 38.75 4.70
522 561 7.414208 GGTCTACCAATAAGCTTAAAGTTGCTC 60.414 40.741 10.85 6.20 35.69 4.26
523 562 6.374613 GGTCTACCAATAAGCTTAAAGTTGCT 59.625 38.462 10.85 1.22 37.24 3.91
524 563 6.150474 TGGTCTACCAATAAGCTTAAAGTTGC 59.850 38.462 10.85 5.97 44.35 4.17
525 564 7.390718 ACTGGTCTACCAATAAGCTTAAAGTTG 59.609 37.037 10.85 10.45 46.97 3.16
526 565 7.459234 ACTGGTCTACCAATAAGCTTAAAGTT 58.541 34.615 10.85 0.00 46.97 2.66
527 566 7.017319 ACTGGTCTACCAATAAGCTTAAAGT 57.983 36.000 10.85 10.46 46.97 2.66
528 567 7.923414 AACTGGTCTACCAATAAGCTTAAAG 57.077 36.000 10.85 5.93 46.97 1.85
529 568 8.599792 AGTAACTGGTCTACCAATAAGCTTAAA 58.400 33.333 10.85 0.00 46.97 1.52
530 569 8.142485 AGTAACTGGTCTACCAATAAGCTTAA 57.858 34.615 10.85 0.00 46.97 1.85
531 570 7.729124 AGTAACTGGTCTACCAATAAGCTTA 57.271 36.000 8.99 8.99 46.97 3.09
532 571 6.622427 AGTAACTGGTCTACCAATAAGCTT 57.378 37.500 3.48 3.48 46.97 3.74
533 572 6.212791 TGAAGTAACTGGTCTACCAATAAGCT 59.787 38.462 2.97 0.00 46.97 3.74
534 573 6.403878 TGAAGTAACTGGTCTACCAATAAGC 58.596 40.000 2.97 0.00 46.97 3.09
535 574 8.095169 ACTTGAAGTAACTGGTCTACCAATAAG 58.905 37.037 0.00 0.00 46.97 1.73
536 575 7.970102 ACTTGAAGTAACTGGTCTACCAATAA 58.030 34.615 0.00 0.00 46.97 1.40
537 576 7.549147 ACTTGAAGTAACTGGTCTACCAATA 57.451 36.000 0.00 0.00 46.97 1.90
538 577 6.435292 ACTTGAAGTAACTGGTCTACCAAT 57.565 37.500 0.00 0.00 46.97 3.16
539 578 5.881923 ACTTGAAGTAACTGGTCTACCAA 57.118 39.130 0.00 0.00 46.97 3.67
540 579 5.047519 GCTACTTGAAGTAACTGGTCTACCA 60.048 44.000 6.51 1.13 35.32 3.25
541 580 5.047519 TGCTACTTGAAGTAACTGGTCTACC 60.048 44.000 6.51 0.00 29.00 3.18
542 581 6.022163 TGCTACTTGAAGTAACTGGTCTAC 57.978 41.667 6.51 0.00 29.00 2.59
543 582 6.852420 ATGCTACTTGAAGTAACTGGTCTA 57.148 37.500 6.51 0.00 29.00 2.59
544 583 5.746990 ATGCTACTTGAAGTAACTGGTCT 57.253 39.130 6.51 0.00 29.00 3.85
545 584 7.275999 GTCTTATGCTACTTGAAGTAACTGGTC 59.724 40.741 6.51 0.00 29.00 4.02
546 585 7.097834 GTCTTATGCTACTTGAAGTAACTGGT 58.902 38.462 6.51 0.00 29.00 4.00
547 586 7.097192 TGTCTTATGCTACTTGAAGTAACTGG 58.903 38.462 6.51 0.00 29.00 4.00
548 587 8.709386 ATGTCTTATGCTACTTGAAGTAACTG 57.291 34.615 6.51 0.00 29.00 3.16
549 588 8.531982 TGATGTCTTATGCTACTTGAAGTAACT 58.468 33.333 6.51 0.00 29.00 2.24
550 589 8.703604 TGATGTCTTATGCTACTTGAAGTAAC 57.296 34.615 6.51 2.65 29.00 2.50
551 590 9.890629 AATGATGTCTTATGCTACTTGAAGTAA 57.109 29.630 6.51 0.00 29.00 2.24
552 591 9.890629 AAATGATGTCTTATGCTACTTGAAGTA 57.109 29.630 4.81 4.81 0.00 2.24
553 592 8.798859 AAATGATGTCTTATGCTACTTGAAGT 57.201 30.769 2.37 2.37 0.00 3.01
554 593 9.107177 AGAAATGATGTCTTATGCTACTTGAAG 57.893 33.333 0.00 0.00 0.00 3.02
555 594 9.453572 AAGAAATGATGTCTTATGCTACTTGAA 57.546 29.630 0.00 0.00 33.53 2.69
581 620 8.394877 CGTCTGCAATACCAAAGAAATACAATA 58.605 33.333 0.00 0.00 0.00 1.90
582 621 7.250569 CGTCTGCAATACCAAAGAAATACAAT 58.749 34.615 0.00 0.00 0.00 2.71
583 622 6.607689 CGTCTGCAATACCAAAGAAATACAA 58.392 36.000 0.00 0.00 0.00 2.41
584 623 5.391523 GCGTCTGCAATACCAAAGAAATACA 60.392 40.000 0.00 0.00 42.15 2.29
585 624 5.028375 GCGTCTGCAATACCAAAGAAATAC 58.972 41.667 0.00 0.00 42.15 1.89
586 625 5.229921 GCGTCTGCAATACCAAAGAAATA 57.770 39.130 0.00 0.00 42.15 1.40
587 626 4.096732 GCGTCTGCAATACCAAAGAAAT 57.903 40.909 0.00 0.00 42.15 2.17
588 627 3.552604 GCGTCTGCAATACCAAAGAAA 57.447 42.857 0.00 0.00 42.15 2.52
601 640 3.976169 AGAGAAATCTATCTGCGTCTGC 58.024 45.455 0.00 0.00 43.20 4.26
602 641 5.143660 CGTAGAGAAATCTATCTGCGTCTG 58.856 45.833 4.81 0.00 43.72 3.51
603 642 4.214545 CCGTAGAGAAATCTATCTGCGTCT 59.785 45.833 10.83 0.00 46.16 4.18
604 643 4.213694 TCCGTAGAGAAATCTATCTGCGTC 59.786 45.833 10.83 0.00 46.16 5.19
605 644 4.023878 GTCCGTAGAGAAATCTATCTGCGT 60.024 45.833 10.83 0.00 46.16 5.24
606 645 4.023963 TGTCCGTAGAGAAATCTATCTGCG 60.024 45.833 5.83 5.83 46.83 5.18
607 646 5.216648 GTGTCCGTAGAGAAATCTATCTGC 58.783 45.833 0.00 0.00 0.00 4.26
608 647 6.378710 TGTGTCCGTAGAGAAATCTATCTG 57.621 41.667 0.00 0.00 0.00 2.90
609 648 6.773200 TGATGTGTCCGTAGAGAAATCTATCT 59.227 38.462 0.00 0.00 32.35 1.98
610 649 6.971602 TGATGTGTCCGTAGAGAAATCTATC 58.028 40.000 0.00 0.00 32.35 2.08
611 650 6.961360 TGATGTGTCCGTAGAGAAATCTAT 57.039 37.500 0.00 0.00 32.35 1.98
612 651 6.961360 ATGATGTGTCCGTAGAGAAATCTA 57.039 37.500 0.00 0.00 32.35 1.98
613 652 5.860941 ATGATGTGTCCGTAGAGAAATCT 57.139 39.130 0.00 0.00 32.35 2.40
614 653 6.910536 AAATGATGTGTCCGTAGAGAAATC 57.089 37.500 0.00 0.00 31.86 2.17
615 654 7.556844 AGTAAATGATGTGTCCGTAGAGAAAT 58.443 34.615 0.00 0.00 0.00 2.17
616 655 6.931838 AGTAAATGATGTGTCCGTAGAGAAA 58.068 36.000 0.00 0.00 0.00 2.52
617 656 6.525578 AGTAAATGATGTGTCCGTAGAGAA 57.474 37.500 0.00 0.00 0.00 2.87
618 657 6.330278 CAAGTAAATGATGTGTCCGTAGAGA 58.670 40.000 0.00 0.00 0.00 3.10
619 658 5.520288 CCAAGTAAATGATGTGTCCGTAGAG 59.480 44.000 0.00 0.00 0.00 2.43
620 659 5.046878 ACCAAGTAAATGATGTGTCCGTAGA 60.047 40.000 0.00 0.00 0.00 2.59
621 660 5.175859 ACCAAGTAAATGATGTGTCCGTAG 58.824 41.667 0.00 0.00 0.00 3.51
622 661 5.155278 ACCAAGTAAATGATGTGTCCGTA 57.845 39.130 0.00 0.00 0.00 4.02
623 662 4.015872 ACCAAGTAAATGATGTGTCCGT 57.984 40.909 0.00 0.00 0.00 4.69
624 663 6.049149 AGATACCAAGTAAATGATGTGTCCG 58.951 40.000 0.00 0.00 0.00 4.79
660 699 9.628746 GCCCGTATAGTTTATTTTTCAAAAGAA 57.371 29.630 0.00 0.00 0.00 2.52
661 700 8.794553 TGCCCGTATAGTTTATTTTTCAAAAGA 58.205 29.630 0.00 0.00 0.00 2.52
662 701 8.856247 GTGCCCGTATAGTTTATTTTTCAAAAG 58.144 33.333 0.00 0.00 0.00 2.27
663 702 8.358148 TGTGCCCGTATAGTTTATTTTTCAAAA 58.642 29.630 0.00 0.00 0.00 2.44
664 703 7.883217 TGTGCCCGTATAGTTTATTTTTCAAA 58.117 30.769 0.00 0.00 0.00 2.69
665 704 7.450124 TGTGCCCGTATAGTTTATTTTTCAA 57.550 32.000 0.00 0.00 0.00 2.69
666 705 7.633193 ATGTGCCCGTATAGTTTATTTTTCA 57.367 32.000 0.00 0.00 0.00 2.69
667 706 7.971722 ACAATGTGCCCGTATAGTTTATTTTTC 59.028 33.333 0.00 0.00 0.00 2.29
668 707 7.832769 ACAATGTGCCCGTATAGTTTATTTTT 58.167 30.769 0.00 0.00 0.00 1.94
669 708 7.399245 ACAATGTGCCCGTATAGTTTATTTT 57.601 32.000 0.00 0.00 0.00 1.82
670 709 7.399245 AACAATGTGCCCGTATAGTTTATTT 57.601 32.000 0.00 0.00 0.00 1.40
671 710 8.685838 ATAACAATGTGCCCGTATAGTTTATT 57.314 30.769 0.00 0.00 0.00 1.40
672 711 8.564574 CAATAACAATGTGCCCGTATAGTTTAT 58.435 33.333 0.00 0.00 0.00 1.40
673 712 7.769507 TCAATAACAATGTGCCCGTATAGTTTA 59.230 33.333 0.00 0.00 0.00 2.01
674 713 6.600032 TCAATAACAATGTGCCCGTATAGTTT 59.400 34.615 0.00 0.00 0.00 2.66
675 714 6.116806 TCAATAACAATGTGCCCGTATAGTT 58.883 36.000 0.00 0.00 0.00 2.24
676 715 5.676552 TCAATAACAATGTGCCCGTATAGT 58.323 37.500 0.00 0.00 0.00 2.12
677 716 6.293407 CCTTCAATAACAATGTGCCCGTATAG 60.293 42.308 0.00 0.00 0.00 1.31
678 717 5.529430 CCTTCAATAACAATGTGCCCGTATA 59.471 40.000 0.00 0.00 0.00 1.47
679 718 4.338118 CCTTCAATAACAATGTGCCCGTAT 59.662 41.667 0.00 0.00 0.00 3.06
680 719 3.692101 CCTTCAATAACAATGTGCCCGTA 59.308 43.478 0.00 0.00 0.00 4.02
681 720 2.491693 CCTTCAATAACAATGTGCCCGT 59.508 45.455 0.00 0.00 0.00 5.28
682 721 2.752354 TCCTTCAATAACAATGTGCCCG 59.248 45.455 0.00 0.00 0.00 6.13
683 722 3.131046 CCTCCTTCAATAACAATGTGCCC 59.869 47.826 0.00 0.00 0.00 5.36
684 723 3.429410 GCCTCCTTCAATAACAATGTGCC 60.429 47.826 0.00 0.00 0.00 5.01
685 724 3.193267 TGCCTCCTTCAATAACAATGTGC 59.807 43.478 0.00 0.00 0.00 4.57
686 725 4.460382 ACTGCCTCCTTCAATAACAATGTG 59.540 41.667 0.00 0.00 0.00 3.21
687 726 4.666512 ACTGCCTCCTTCAATAACAATGT 58.333 39.130 0.00 0.00 0.00 2.71
688 727 6.949352 ATACTGCCTCCTTCAATAACAATG 57.051 37.500 0.00 0.00 0.00 2.82
689 728 9.071276 CAATATACTGCCTCCTTCAATAACAAT 57.929 33.333 0.00 0.00 0.00 2.71
690 729 8.052748 ACAATATACTGCCTCCTTCAATAACAA 58.947 33.333 0.00 0.00 0.00 2.83
691 730 7.573710 ACAATATACTGCCTCCTTCAATAACA 58.426 34.615 0.00 0.00 0.00 2.41
692 731 9.209175 CTACAATATACTGCCTCCTTCAATAAC 57.791 37.037 0.00 0.00 0.00 1.89
693 732 8.375506 CCTACAATATACTGCCTCCTTCAATAA 58.624 37.037 0.00 0.00 0.00 1.40
694 733 7.038302 CCCTACAATATACTGCCTCCTTCAATA 60.038 40.741 0.00 0.00 0.00 1.90
695 734 6.240002 CCCTACAATATACTGCCTCCTTCAAT 60.240 42.308 0.00 0.00 0.00 2.57
696 735 5.071788 CCCTACAATATACTGCCTCCTTCAA 59.928 44.000 0.00 0.00 0.00 2.69
697 736 4.593206 CCCTACAATATACTGCCTCCTTCA 59.407 45.833 0.00 0.00 0.00 3.02
718 757 1.134438 AGGACTGGAGGACCAAACCC 61.134 60.000 0.00 0.00 46.32 4.11
719 758 0.771755 AAGGACTGGAGGACCAAACC 59.228 55.000 0.00 0.00 46.32 3.27
720 759 2.230660 CAAAGGACTGGAGGACCAAAC 58.769 52.381 0.00 0.00 46.32 2.93
721 760 1.478654 GCAAAGGACTGGAGGACCAAA 60.479 52.381 0.00 0.00 46.32 3.28
722 761 0.110486 GCAAAGGACTGGAGGACCAA 59.890 55.000 0.00 0.00 46.32 3.67
723 762 1.059584 TGCAAAGGACTGGAGGACCA 61.060 55.000 0.00 0.00 44.76 4.02
724 763 0.606673 GTGCAAAGGACTGGAGGACC 60.607 60.000 0.00 0.00 0.00 4.46
728 767 1.672356 CCCGTGCAAAGGACTGGAG 60.672 63.158 10.77 0.00 37.88 3.86
732 771 2.351706 TTTTACCCGTGCAAAGGACT 57.648 45.000 10.18 0.00 37.88 3.85
739 778 0.386113 GCTTGGTTTTTACCCGTGCA 59.614 50.000 0.00 0.00 0.00 4.57
802 841 4.204012 ACTCACTGTAGCTAGCTAGGAAG 58.796 47.826 24.78 21.91 0.00 3.46
803 842 4.237976 ACTCACTGTAGCTAGCTAGGAA 57.762 45.455 24.78 12.35 0.00 3.36
840 1356 7.015098 CAGGAGTACTACCAGCTACTACTAGTA 59.985 44.444 0.00 1.89 32.60 1.82
841 1357 5.904750 AGGAGTACTACCAGCTACTACTAGT 59.095 44.000 0.00 0.00 33.10 2.57
852 1368 1.025812 CCGAGCAGGAGTACTACCAG 58.974 60.000 0.00 0.71 45.00 4.00
853 1369 0.622136 TCCGAGCAGGAGTACTACCA 59.378 55.000 0.00 0.00 45.98 3.25
854 1370 3.491208 TCCGAGCAGGAGTACTACC 57.509 57.895 0.00 2.33 45.98 3.18
863 1379 1.361993 CCGAGAGATTCCGAGCAGG 59.638 63.158 0.00 0.00 42.97 4.85
864 1380 1.299773 GCCGAGAGATTCCGAGCAG 60.300 63.158 0.00 0.00 0.00 4.24
865 1381 1.729470 GAGCCGAGAGATTCCGAGCA 61.729 60.000 0.00 0.00 0.00 4.26
1001 1537 4.383861 TGCTCTGCTCGCTGGGTG 62.384 66.667 0.00 0.00 0.00 4.61
1073 1611 5.896073 TTTCTTCCTTCTCTCCTGTTCTT 57.104 39.130 0.00 0.00 0.00 2.52
1218 1760 1.222113 GGAAGGAAGGAAGGGAGCG 59.778 63.158 0.00 0.00 0.00 5.03
1267 1825 2.867793 ATTCCATACGCGGCAGCACA 62.868 55.000 12.47 0.00 45.49 4.57
1275 1833 3.182572 GCAGAAGAACTATTCCATACGCG 59.817 47.826 3.53 3.53 0.00 6.01
1284 1842 5.406649 CGAAGAGTGAGCAGAAGAACTATT 58.593 41.667 0.00 0.00 0.00 1.73
1285 1843 4.142271 CCGAAGAGTGAGCAGAAGAACTAT 60.142 45.833 0.00 0.00 0.00 2.12
1286 1844 3.191581 CCGAAGAGTGAGCAGAAGAACTA 59.808 47.826 0.00 0.00 0.00 2.24
1302 1860 2.357637 CACAACAAAAAGAGGCCGAAGA 59.642 45.455 0.00 0.00 0.00 2.87
1306 1864 0.744281 ACCACAACAAAAAGAGGCCG 59.256 50.000 0.00 0.00 0.00 6.13
1310 1868 3.181397 CTGCACACCACAACAAAAAGAG 58.819 45.455 0.00 0.00 0.00 2.85
1311 1869 2.094286 CCTGCACACCACAACAAAAAGA 60.094 45.455 0.00 0.00 0.00 2.52
1314 1872 0.534412 CCCTGCACACCACAACAAAA 59.466 50.000 0.00 0.00 0.00 2.44
1437 1995 3.812203 GCATGCATGTGCGGTAGA 58.188 55.556 26.79 0.00 45.83 2.59
1454 2012 1.294659 GAGGAAGCTGTTGCCTGACG 61.295 60.000 0.00 0.00 40.80 4.35
1563 2135 1.751351 CAGAGGCCTCATGTTACTCGA 59.249 52.381 33.90 0.00 33.58 4.04
1564 2136 1.804372 GCAGAGGCCTCATGTTACTCG 60.804 57.143 33.90 11.32 33.58 4.18
1581 2153 0.464013 CCCCAGATCTTGAGCAGCAG 60.464 60.000 0.00 0.00 0.00 4.24
1582 2154 1.203441 ACCCCAGATCTTGAGCAGCA 61.203 55.000 0.00 0.00 0.00 4.41
1583 2155 0.747283 CACCCCAGATCTTGAGCAGC 60.747 60.000 0.00 0.00 0.00 5.25
1589 2164 1.625315 TGACTGACACCCCAGATCTTG 59.375 52.381 0.00 0.00 37.59 3.02
1597 2172 0.182775 ACCAAACTGACTGACACCCC 59.817 55.000 0.00 0.00 0.00 4.95
1600 2175 2.477863 GCAACACCAAACTGACTGACAC 60.478 50.000 0.00 0.00 0.00 3.67
1803 2393 1.493446 ACCAAGATCCCCCGAATTACC 59.507 52.381 0.00 0.00 0.00 2.85
1830 2746 7.591006 ATTGCTTGAGCTAATTTGACAAATG 57.409 32.000 14.05 4.25 42.66 2.32
2001 2924 1.395826 CCTCCTTCCTACGGCCTCAG 61.396 65.000 0.00 0.00 0.00 3.35
2045 2968 0.734253 CGGGCTTCTGAGTTCTGACG 60.734 60.000 0.00 0.00 0.00 4.35
2053 2976 1.739562 GTCTGTGCGGGCTTCTGAG 60.740 63.158 0.00 0.00 0.00 3.35
2054 2977 2.343758 GTCTGTGCGGGCTTCTGA 59.656 61.111 0.00 0.00 0.00 3.27
2056 2979 2.210013 TCTGTCTGTGCGGGCTTCT 61.210 57.895 0.00 0.00 0.00 2.85
2058 2981 2.031163 GTCTGTCTGTGCGGGCTT 59.969 61.111 0.00 0.00 0.00 4.35
2059 2982 3.231889 CTGTCTGTCTGTGCGGGCT 62.232 63.158 0.00 0.00 0.00 5.19
2060 2983 2.740055 CTGTCTGTCTGTGCGGGC 60.740 66.667 0.00 0.00 0.00 6.13
2061 2984 1.373497 GTCTGTCTGTCTGTGCGGG 60.373 63.158 0.00 0.00 0.00 6.13
2062 2985 1.373497 GGTCTGTCTGTCTGTGCGG 60.373 63.158 0.00 0.00 0.00 5.69
2063 2986 0.941463 GTGGTCTGTCTGTCTGTGCG 60.941 60.000 0.00 0.00 0.00 5.34
2064 2987 0.941463 CGTGGTCTGTCTGTCTGTGC 60.941 60.000 0.00 0.00 0.00 4.57
2065 2988 0.385751 ACGTGGTCTGTCTGTCTGTG 59.614 55.000 0.00 0.00 0.00 3.66
2066 2989 1.112113 AACGTGGTCTGTCTGTCTGT 58.888 50.000 0.00 0.00 0.00 3.41
2067 2990 1.202417 ACAACGTGGTCTGTCTGTCTG 60.202 52.381 0.00 0.00 0.00 3.51
2068 2991 1.112113 ACAACGTGGTCTGTCTGTCT 58.888 50.000 0.00 0.00 0.00 3.41
2069 2992 1.209128 CACAACGTGGTCTGTCTGTC 58.791 55.000 0.00 0.00 0.00 3.51
2131 3054 6.475727 TCTCGTGAGCAATAATTACAGCTAAC 59.524 38.462 14.46 14.46 37.48 2.34
2185 3111 0.179045 GGCATCCACTGGCGACTTAT 60.179 55.000 0.00 0.00 41.02 1.73
2227 3153 8.114290 ACATATGACGACAAGTTAATAAAAGCG 58.886 33.333 10.38 0.00 0.00 4.68
2276 3202 2.267188 TGTACACAGATAACGACGCC 57.733 50.000 0.00 0.00 0.00 5.68
2307 3233 5.235186 CAGTGTCAGAACAAAAGTACTCCTG 59.765 44.000 0.00 0.00 37.08 3.86
2310 3236 4.570772 TGCAGTGTCAGAACAAAAGTACTC 59.429 41.667 0.00 0.00 37.08 2.59
2387 3457 3.068873 GTCGGATTTGTCCTAGCTCTGAT 59.931 47.826 0.00 0.00 0.00 2.90
2396 3466 1.189524 TCACGGGTCGGATTTGTCCT 61.190 55.000 0.00 0.00 0.00 3.85
2418 3492 2.726821 TGTCCGGGTACGTCTAGAAAT 58.273 47.619 0.00 0.00 38.78 2.17
2420 3494 2.019249 CATGTCCGGGTACGTCTAGAA 58.981 52.381 0.00 0.00 38.78 2.10
2422 3496 1.671979 TCATGTCCGGGTACGTCTAG 58.328 55.000 0.00 0.00 38.78 2.43
2441 3515 4.148825 GTGGGCGCTGTCTCGGAT 62.149 66.667 7.64 0.00 0.00 4.18
2454 3528 2.423064 GCATTTAAGGGGCCGTGGG 61.423 63.158 0.00 0.00 0.00 4.61
2507 3581 6.147656 GTGTATGATCGATGTGCATGGATTTA 59.852 38.462 0.54 4.95 36.58 1.40
2600 3685 8.223100 GGAGTTTAATGTTTGAATTGTGCATTC 58.777 33.333 0.00 0.00 41.76 2.67
2664 3769 6.511767 CGGAATCTTCGGGATCTAAATGTTTG 60.512 42.308 0.00 0.00 32.76 2.93
2666 3771 5.057149 CGGAATCTTCGGGATCTAAATGTT 58.943 41.667 0.00 0.00 32.76 2.71
2673 3778 3.497332 TGTATCGGAATCTTCGGGATCT 58.503 45.455 0.00 0.00 32.76 2.75
2692 3797 8.025445 GCATATTTGTGAACTTTCTGAAGATGT 58.975 33.333 0.00 0.00 36.69 3.06
2793 3903 3.912496 ATGATTGTCGAGGGTGATGAA 57.088 42.857 0.00 0.00 0.00 2.57
2800 3910 3.205338 TGCACAATATGATTGTCGAGGG 58.795 45.455 1.85 0.00 0.00 4.30
2830 3940 2.629656 GGCAGCTGGCGACATGTTT 61.630 57.895 25.69 0.00 46.16 2.83
2925 4039 7.445945 CAAGAAGTACCTAGGAAGAATATGGG 58.554 42.308 17.98 0.00 0.00 4.00
3011 4129 7.439108 AATGGTATATATCCTTAGTGGGCTC 57.561 40.000 0.00 0.00 36.20 4.70
3036 4154 6.071221 ACAACGTATGGGATACTACTTTGTCA 60.071 38.462 0.00 0.00 36.27 3.58
3042 4160 6.604795 ACAACTACAACGTATGGGATACTACT 59.395 38.462 0.00 0.00 33.59 2.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.