Multiple sequence alignment - TraesCS5A01G238700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G238700 chr5A 100.000 4450 0 0 1 4450 454773756 454778205 0.000000e+00 8218
1 TraesCS5A01G238700 chr5B 87.483 3635 236 95 554 4128 418315382 418318857 0.000000e+00 3989
2 TraesCS5A01G238700 chr5B 87.454 1363 78 30 2789 4128 418330842 418332134 0.000000e+00 1483
3 TraesCS5A01G238700 chr5B 86.961 1089 59 25 3055 4128 418321027 418322047 0.000000e+00 1147
4 TraesCS5A01G238700 chr5B 86.961 1089 59 25 3055 4128 418323159 418324179 0.000000e+00 1147
5 TraesCS5A01G238700 chr5B 85.366 287 20 12 191 472 418314993 418315262 1.220000e-70 278
6 TraesCS5A01G238700 chr5B 94.771 153 7 1 4299 4450 418319543 418319695 2.070000e-58 237
7 TraesCS5A01G238700 chr5B 94.771 153 7 1 4299 4450 418322734 418322886 2.070000e-58 237
8 TraesCS5A01G238700 chr5B 94.771 153 7 1 4299 4450 418324861 418325013 2.070000e-58 237
9 TraesCS5A01G238700 chr5B 81.967 183 11 9 4120 4301 418319282 418319443 7.760000e-28 135
10 TraesCS5A01G238700 chr5B 81.967 183 11 9 4120 4301 418322473 418322634 7.760000e-28 135
11 TraesCS5A01G238700 chr5D 91.002 2923 150 45 933 3810 353840999 353838145 0.000000e+00 3836
12 TraesCS5A01G238700 chr5D 93.057 749 45 3 3706 4450 353897145 353897890 0.000000e+00 1088
13 TraesCS5A01G238700 chr5D 81.584 505 26 26 189 674 353841783 353841327 5.470000e-94 355
14 TraesCS5A01G238700 chrUn 86.961 1089 59 25 3055 4128 357740141 357739121 0.000000e+00 1147
15 TraesCS5A01G238700 chrUn 94.771 153 7 1 4299 4450 357738435 357738283 2.070000e-58 237
16 TraesCS5A01G238700 chrUn 94.771 153 7 1 4299 4450 378019296 378019144 2.070000e-58 237
17 TraesCS5A01G238700 chrUn 94.771 153 7 1 4299 4450 452685129 452684977 2.070000e-58 237
18 TraesCS5A01G238700 chrUn 81.967 183 11 9 4120 4301 357738696 357738535 7.760000e-28 135
19 TraesCS5A01G238700 chr4A 79.795 292 29 20 638 926 56787088 56787352 7.600000e-43 185


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G238700 chr5A 454773756 454778205 4449 False 8218.000000 8218 100.000000 1 4450 1 chr5A.!!$F1 4449
1 TraesCS5A01G238700 chr5B 418330842 418332134 1292 False 1483.000000 1483 87.454000 2789 4128 1 chr5B.!!$F1 1339
2 TraesCS5A01G238700 chr5B 418314993 418325013 10020 False 838.000000 3989 88.335333 191 4450 9 chr5B.!!$F2 4259
3 TraesCS5A01G238700 chr5D 353838145 353841783 3638 True 2095.500000 3836 86.293000 189 3810 2 chr5D.!!$R1 3621
4 TraesCS5A01G238700 chr5D 353897145 353897890 745 False 1088.000000 1088 93.057000 3706 4450 1 chr5D.!!$F1 744
5 TraesCS5A01G238700 chrUn 357738283 357740141 1858 True 506.333333 1147 87.899667 3055 4450 3 chrUn.!!$R3 1395

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
106 107 0.036765 AAATGTCGGCCGCTTGTCTA 60.037 50.000 23.51 0.00 0.00 2.59 F
107 108 0.036765 AATGTCGGCCGCTTGTCTAA 60.037 50.000 23.51 0.00 0.00 2.10 F
1093 1223 0.105039 CTCAGGTGGAGTAATCCGGC 59.895 60.000 4.49 0.00 38.90 6.13 F
1121 1251 0.676151 CAGGTTCTTGCTCCAGCCTC 60.676 60.000 0.00 0.00 41.18 4.70 F
1653 1797 0.727122 GGACGACTCGGTGTACAACG 60.727 60.000 27.17 27.17 44.11 4.10 F
3136 3321 1.747355 GCTGTTGCTGCATTATCCAGT 59.253 47.619 1.84 0.00 36.03 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1716 1860 0.108756 GACTGTTACCTGAGGGCGTC 60.109 60.000 2.38 0.00 35.63 5.19 R
1755 1913 0.392193 ATTGCAGCGGAGAACAGAGG 60.392 55.000 0.00 0.00 0.00 3.69 R
2407 2580 0.027194 CCGATCACTGCAGCAAATCG 59.973 55.000 26.57 26.57 39.05 3.34 R
2408 2581 0.248377 GCCGATCACTGCAGCAAATC 60.248 55.000 15.27 12.96 0.00 2.17 R
3261 3446 0.462047 GTTGAGGCCGATCGGAATGT 60.462 55.000 37.64 17.46 37.50 2.71 R
4402 5147 1.811359 TGCATGCGACATTGTTGATGA 59.189 42.857 14.09 0.00 39.15 2.92 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.698855 TCTGGCAACCTCTCTAATGC 57.301 50.000 0.00 0.00 38.06 3.56
22 23 2.695314 GCAACCTCTCTAATGCCGG 58.305 57.895 0.00 0.00 32.73 6.13
23 24 0.107654 GCAACCTCTCTAATGCCGGT 60.108 55.000 1.90 0.00 32.73 5.28
24 25 1.656652 CAACCTCTCTAATGCCGGTG 58.343 55.000 1.90 0.00 0.00 4.94
25 26 1.066143 CAACCTCTCTAATGCCGGTGT 60.066 52.381 1.90 0.00 0.00 4.16
26 27 1.276622 ACCTCTCTAATGCCGGTGTT 58.723 50.000 1.90 0.36 0.00 3.32
27 28 1.628846 ACCTCTCTAATGCCGGTGTTT 59.371 47.619 1.90 0.00 0.00 2.83
28 29 2.280628 CCTCTCTAATGCCGGTGTTTC 58.719 52.381 1.90 0.00 0.00 2.78
29 30 2.093447 CCTCTCTAATGCCGGTGTTTCT 60.093 50.000 1.90 0.00 0.00 2.52
30 31 3.132289 CCTCTCTAATGCCGGTGTTTCTA 59.868 47.826 1.90 0.00 0.00 2.10
31 32 4.363999 CTCTCTAATGCCGGTGTTTCTAG 58.636 47.826 1.90 0.00 0.00 2.43
32 33 2.866762 CTCTAATGCCGGTGTTTCTAGC 59.133 50.000 1.90 0.00 0.00 3.42
33 34 2.235155 TCTAATGCCGGTGTTTCTAGCA 59.765 45.455 1.90 0.00 37.94 3.49
34 35 2.128771 AATGCCGGTGTTTCTAGCAT 57.871 45.000 1.90 0.00 45.68 3.79
35 36 2.128771 ATGCCGGTGTTTCTAGCATT 57.871 45.000 1.90 0.00 41.19 3.56
36 37 1.448985 TGCCGGTGTTTCTAGCATTC 58.551 50.000 1.90 0.00 0.00 2.67
37 38 1.003118 TGCCGGTGTTTCTAGCATTCT 59.997 47.619 1.90 0.00 0.00 2.40
38 39 2.084546 GCCGGTGTTTCTAGCATTCTT 58.915 47.619 1.90 0.00 0.00 2.52
39 40 3.267483 GCCGGTGTTTCTAGCATTCTTA 58.733 45.455 1.90 0.00 0.00 2.10
40 41 3.063588 GCCGGTGTTTCTAGCATTCTTAC 59.936 47.826 1.90 0.00 0.00 2.34
41 42 4.504858 CCGGTGTTTCTAGCATTCTTACT 58.495 43.478 0.00 0.00 0.00 2.24
42 43 4.330074 CCGGTGTTTCTAGCATTCTTACTG 59.670 45.833 0.00 0.00 0.00 2.74
43 44 5.168569 CGGTGTTTCTAGCATTCTTACTGA 58.831 41.667 0.00 0.00 0.00 3.41
44 45 5.812642 CGGTGTTTCTAGCATTCTTACTGAT 59.187 40.000 0.00 0.00 0.00 2.90
45 46 6.237942 CGGTGTTTCTAGCATTCTTACTGATG 60.238 42.308 0.00 0.00 0.00 3.07
46 47 6.818644 GGTGTTTCTAGCATTCTTACTGATGA 59.181 38.462 0.00 0.00 0.00 2.92
47 48 7.201565 GGTGTTTCTAGCATTCTTACTGATGAC 60.202 40.741 0.00 0.00 0.00 3.06
48 49 6.818644 TGTTTCTAGCATTCTTACTGATGACC 59.181 38.462 0.00 0.00 0.00 4.02
49 50 6.798427 TTCTAGCATTCTTACTGATGACCT 57.202 37.500 0.00 0.00 0.00 3.85
50 51 6.154203 TCTAGCATTCTTACTGATGACCTG 57.846 41.667 0.00 0.00 0.00 4.00
51 52 3.539604 AGCATTCTTACTGATGACCTGC 58.460 45.455 0.00 0.00 0.00 4.85
52 53 2.615912 GCATTCTTACTGATGACCTGCC 59.384 50.000 0.00 0.00 0.00 4.85
53 54 3.683847 GCATTCTTACTGATGACCTGCCT 60.684 47.826 0.00 0.00 0.00 4.75
54 55 3.895232 TTCTTACTGATGACCTGCCTC 57.105 47.619 0.00 0.00 0.00 4.70
55 56 2.820178 TCTTACTGATGACCTGCCTCA 58.180 47.619 0.00 0.00 0.00 3.86
56 57 3.378512 TCTTACTGATGACCTGCCTCAT 58.621 45.455 0.00 0.00 33.32 2.90
57 58 3.776969 TCTTACTGATGACCTGCCTCATT 59.223 43.478 0.00 0.00 30.62 2.57
58 59 2.706339 ACTGATGACCTGCCTCATTC 57.294 50.000 0.00 0.00 30.62 2.67
59 60 2.194859 ACTGATGACCTGCCTCATTCT 58.805 47.619 0.00 0.00 30.62 2.40
60 61 2.093075 ACTGATGACCTGCCTCATTCTG 60.093 50.000 0.00 0.00 30.62 3.02
61 62 2.169978 CTGATGACCTGCCTCATTCTGA 59.830 50.000 0.00 0.00 30.62 3.27
62 63 2.775960 TGATGACCTGCCTCATTCTGAT 59.224 45.455 0.00 0.00 30.62 2.90
63 64 3.201487 TGATGACCTGCCTCATTCTGATT 59.799 43.478 0.00 0.00 30.62 2.57
64 65 3.726557 TGACCTGCCTCATTCTGATTT 57.273 42.857 0.00 0.00 0.00 2.17
65 66 3.349927 TGACCTGCCTCATTCTGATTTG 58.650 45.455 0.00 0.00 0.00 2.32
66 67 2.686915 GACCTGCCTCATTCTGATTTGG 59.313 50.000 0.00 0.00 0.00 3.28
67 68 2.309755 ACCTGCCTCATTCTGATTTGGA 59.690 45.455 0.00 0.00 0.00 3.53
68 69 3.053095 ACCTGCCTCATTCTGATTTGGAT 60.053 43.478 0.00 0.00 0.00 3.41
69 70 3.568853 CCTGCCTCATTCTGATTTGGATC 59.431 47.826 0.00 0.00 0.00 3.36
70 71 3.559069 TGCCTCATTCTGATTTGGATCC 58.441 45.455 4.20 4.20 0.00 3.36
71 72 2.889678 GCCTCATTCTGATTTGGATCCC 59.110 50.000 9.90 0.00 0.00 3.85
72 73 3.436180 GCCTCATTCTGATTTGGATCCCT 60.436 47.826 9.90 0.00 0.00 4.20
73 74 4.396522 CCTCATTCTGATTTGGATCCCTC 58.603 47.826 9.90 4.21 0.00 4.30
74 75 4.396522 CTCATTCTGATTTGGATCCCTCC 58.603 47.826 9.90 0.00 42.45 4.30
75 76 3.139025 TCATTCTGATTTGGATCCCTCCC 59.861 47.826 9.90 0.00 41.29 4.30
76 77 2.594536 TCTGATTTGGATCCCTCCCT 57.405 50.000 9.90 0.00 41.29 4.20
77 78 2.412591 TCTGATTTGGATCCCTCCCTC 58.587 52.381 9.90 0.00 41.29 4.30
78 79 2.021639 TCTGATTTGGATCCCTCCCTCT 60.022 50.000 9.90 0.00 41.29 3.69
79 80 3.209843 TCTGATTTGGATCCCTCCCTCTA 59.790 47.826 9.90 0.00 41.29 2.43
80 81 3.582208 CTGATTTGGATCCCTCCCTCTAG 59.418 52.174 9.90 0.00 41.29 2.43
81 82 3.051032 TGATTTGGATCCCTCCCTCTAGT 60.051 47.826 9.90 0.00 41.29 2.57
82 83 3.508952 TTTGGATCCCTCCCTCTAGTT 57.491 47.619 9.90 0.00 41.29 2.24
83 84 2.777459 TGGATCCCTCCCTCTAGTTC 57.223 55.000 9.90 0.00 41.29 3.01
84 85 1.937350 TGGATCCCTCCCTCTAGTTCA 59.063 52.381 9.90 0.00 41.29 3.18
85 86 2.524440 TGGATCCCTCCCTCTAGTTCAT 59.476 50.000 9.90 0.00 41.29 2.57
86 87 3.169908 GGATCCCTCCCTCTAGTTCATC 58.830 54.545 0.00 0.00 35.28 2.92
87 88 3.438668 GGATCCCTCCCTCTAGTTCATCA 60.439 52.174 0.00 0.00 35.28 3.07
88 89 3.776731 TCCCTCCCTCTAGTTCATCAA 57.223 47.619 0.00 0.00 0.00 2.57
89 90 4.074799 TCCCTCCCTCTAGTTCATCAAA 57.925 45.455 0.00 0.00 0.00 2.69
90 91 4.635473 TCCCTCCCTCTAGTTCATCAAAT 58.365 43.478 0.00 0.00 0.00 2.32
91 92 4.410228 TCCCTCCCTCTAGTTCATCAAATG 59.590 45.833 0.00 0.00 0.00 2.32
92 93 4.164988 CCCTCCCTCTAGTTCATCAAATGT 59.835 45.833 0.00 0.00 0.00 2.71
93 94 5.363939 CCTCCCTCTAGTTCATCAAATGTC 58.636 45.833 0.00 0.00 0.00 3.06
94 95 5.011090 TCCCTCTAGTTCATCAAATGTCG 57.989 43.478 0.00 0.00 0.00 4.35
95 96 4.122776 CCCTCTAGTTCATCAAATGTCGG 58.877 47.826 0.00 0.00 0.00 4.79
96 97 3.557595 CCTCTAGTTCATCAAATGTCGGC 59.442 47.826 0.00 0.00 0.00 5.54
97 98 3.531538 TCTAGTTCATCAAATGTCGGCC 58.468 45.455 0.00 0.00 0.00 6.13
98 99 1.086696 AGTTCATCAAATGTCGGCCG 58.913 50.000 22.12 22.12 0.00 6.13
99 100 0.523335 GTTCATCAAATGTCGGCCGC 60.523 55.000 23.51 16.75 0.00 6.53
100 101 0.676466 TTCATCAAATGTCGGCCGCT 60.676 50.000 23.51 4.26 0.00 5.52
101 102 0.676466 TCATCAAATGTCGGCCGCTT 60.676 50.000 23.51 11.11 0.00 4.68
102 103 0.523968 CATCAAATGTCGGCCGCTTG 60.524 55.000 23.51 19.72 0.00 4.01
103 104 0.960364 ATCAAATGTCGGCCGCTTGT 60.960 50.000 23.51 6.29 0.00 3.16
104 105 1.154225 CAAATGTCGGCCGCTTGTC 60.154 57.895 23.51 8.64 0.00 3.18
105 106 1.302511 AAATGTCGGCCGCTTGTCT 60.303 52.632 23.51 0.00 0.00 3.41
106 107 0.036765 AAATGTCGGCCGCTTGTCTA 60.037 50.000 23.51 0.00 0.00 2.59
107 108 0.036765 AATGTCGGCCGCTTGTCTAA 60.037 50.000 23.51 0.00 0.00 2.10
108 109 0.178068 ATGTCGGCCGCTTGTCTAAT 59.822 50.000 23.51 1.51 0.00 1.73
109 110 0.739462 TGTCGGCCGCTTGTCTAATG 60.739 55.000 23.51 0.00 0.00 1.90
110 111 1.153449 TCGGCCGCTTGTCTAATGG 60.153 57.895 23.51 0.00 0.00 3.16
111 112 2.180204 CGGCCGCTTGTCTAATGGG 61.180 63.158 14.67 0.00 0.00 4.00
112 113 1.077716 GGCCGCTTGTCTAATGGGT 60.078 57.895 0.00 0.00 0.00 4.51
113 114 0.179468 GGCCGCTTGTCTAATGGGTA 59.821 55.000 0.00 0.00 0.00 3.69
114 115 1.583054 GCCGCTTGTCTAATGGGTAG 58.417 55.000 0.00 0.00 0.00 3.18
115 116 1.138266 GCCGCTTGTCTAATGGGTAGA 59.862 52.381 0.00 0.00 36.43 2.59
116 117 2.803492 GCCGCTTGTCTAATGGGTAGAG 60.803 54.545 0.00 0.00 39.61 2.43
117 118 2.224066 CCGCTTGTCTAATGGGTAGAGG 60.224 54.545 0.00 0.00 39.61 3.69
118 119 2.693591 CGCTTGTCTAATGGGTAGAGGA 59.306 50.000 0.00 0.00 39.61 3.71
119 120 3.243569 CGCTTGTCTAATGGGTAGAGGAG 60.244 52.174 0.00 0.00 39.61 3.69
120 121 3.961408 GCTTGTCTAATGGGTAGAGGAGA 59.039 47.826 0.00 0.00 39.61 3.71
121 122 4.038642 GCTTGTCTAATGGGTAGAGGAGAG 59.961 50.000 0.00 0.00 39.61 3.20
122 123 4.186077 TGTCTAATGGGTAGAGGAGAGG 57.814 50.000 0.00 0.00 39.61 3.69
123 124 3.792114 TGTCTAATGGGTAGAGGAGAGGA 59.208 47.826 0.00 0.00 39.61 3.71
124 125 4.141135 TGTCTAATGGGTAGAGGAGAGGAG 60.141 50.000 0.00 0.00 39.61 3.69
125 126 4.105057 GTCTAATGGGTAGAGGAGAGGAGA 59.895 50.000 0.00 0.00 39.61 3.71
126 127 4.732443 TCTAATGGGTAGAGGAGAGGAGAA 59.268 45.833 0.00 0.00 33.67 2.87
127 128 3.611025 ATGGGTAGAGGAGAGGAGAAG 57.389 52.381 0.00 0.00 0.00 2.85
128 129 1.571457 TGGGTAGAGGAGAGGAGAAGG 59.429 57.143 0.00 0.00 0.00 3.46
129 130 1.854280 GGGTAGAGGAGAGGAGAAGGA 59.146 57.143 0.00 0.00 0.00 3.36
130 131 2.449345 GGGTAGAGGAGAGGAGAAGGAT 59.551 54.545 0.00 0.00 0.00 3.24
131 132 3.496331 GGTAGAGGAGAGGAGAAGGATG 58.504 54.545 0.00 0.00 0.00 3.51
132 133 3.139397 GGTAGAGGAGAGGAGAAGGATGA 59.861 52.174 0.00 0.00 0.00 2.92
133 134 4.386986 GGTAGAGGAGAGGAGAAGGATGAA 60.387 50.000 0.00 0.00 0.00 2.57
134 135 3.914771 AGAGGAGAGGAGAAGGATGAAG 58.085 50.000 0.00 0.00 0.00 3.02
135 136 3.531397 AGAGGAGAGGAGAAGGATGAAGA 59.469 47.826 0.00 0.00 0.00 2.87
136 137 3.891366 GAGGAGAGGAGAAGGATGAAGAG 59.109 52.174 0.00 0.00 0.00 2.85
137 138 2.965147 GGAGAGGAGAAGGATGAAGAGG 59.035 54.545 0.00 0.00 0.00 3.69
138 139 3.373658 GGAGAGGAGAAGGATGAAGAGGA 60.374 52.174 0.00 0.00 0.00 3.71
139 140 4.285863 GAGAGGAGAAGGATGAAGAGGAA 58.714 47.826 0.00 0.00 0.00 3.36
140 141 4.693420 AGAGGAGAAGGATGAAGAGGAAA 58.307 43.478 0.00 0.00 0.00 3.13
141 142 5.097234 AGAGGAGAAGGATGAAGAGGAAAA 58.903 41.667 0.00 0.00 0.00 2.29
142 143 5.549619 AGAGGAGAAGGATGAAGAGGAAAAA 59.450 40.000 0.00 0.00 0.00 1.94
143 144 5.814481 AGGAGAAGGATGAAGAGGAAAAAG 58.186 41.667 0.00 0.00 0.00 2.27
144 145 5.311913 AGGAGAAGGATGAAGAGGAAAAAGT 59.688 40.000 0.00 0.00 0.00 2.66
145 146 5.414144 GGAGAAGGATGAAGAGGAAAAAGTG 59.586 44.000 0.00 0.00 0.00 3.16
146 147 5.320277 AGAAGGATGAAGAGGAAAAAGTGG 58.680 41.667 0.00 0.00 0.00 4.00
147 148 4.039603 AGGATGAAGAGGAAAAAGTGGG 57.960 45.455 0.00 0.00 0.00 4.61
148 149 3.399305 AGGATGAAGAGGAAAAAGTGGGT 59.601 43.478 0.00 0.00 0.00 4.51
149 150 4.140924 AGGATGAAGAGGAAAAAGTGGGTT 60.141 41.667 0.00 0.00 0.00 4.11
150 151 4.218635 GGATGAAGAGGAAAAAGTGGGTTC 59.781 45.833 0.00 0.00 0.00 3.62
151 152 3.211045 TGAAGAGGAAAAAGTGGGTTCG 58.789 45.455 0.00 0.00 0.00 3.95
152 153 3.211865 GAAGAGGAAAAAGTGGGTTCGT 58.788 45.455 0.00 0.00 0.00 3.85
153 154 2.572290 AGAGGAAAAAGTGGGTTCGTG 58.428 47.619 0.00 0.00 0.00 4.35
154 155 1.607148 GAGGAAAAAGTGGGTTCGTGG 59.393 52.381 0.00 0.00 0.00 4.94
155 156 1.064240 AGGAAAAAGTGGGTTCGTGGT 60.064 47.619 0.00 0.00 0.00 4.16
156 157 1.066454 GGAAAAAGTGGGTTCGTGGTG 59.934 52.381 0.00 0.00 0.00 4.17
157 158 1.066454 GAAAAAGTGGGTTCGTGGTGG 59.934 52.381 0.00 0.00 0.00 4.61
158 159 1.388837 AAAAGTGGGTTCGTGGTGGC 61.389 55.000 0.00 0.00 0.00 5.01
159 160 3.785122 AAGTGGGTTCGTGGTGGCC 62.785 63.158 0.00 0.00 0.00 5.36
164 165 4.612412 GTTCGTGGTGGCCGGTGA 62.612 66.667 1.90 0.00 0.00 4.02
165 166 4.308458 TTCGTGGTGGCCGGTGAG 62.308 66.667 1.90 0.00 0.00 3.51
173 174 4.410400 GGCCGGTGAGGGTCCAAG 62.410 72.222 1.90 0.00 41.48 3.61
174 175 4.410400 GCCGGTGAGGGTCCAAGG 62.410 72.222 1.90 0.00 41.48 3.61
175 176 4.410400 CCGGTGAGGGTCCAAGGC 62.410 72.222 0.00 0.00 35.97 4.35
176 177 3.322466 CGGTGAGGGTCCAAGGCT 61.322 66.667 0.00 0.00 0.00 4.58
177 178 2.352805 GGTGAGGGTCCAAGGCTG 59.647 66.667 0.00 0.00 0.00 4.85
178 179 2.224159 GGTGAGGGTCCAAGGCTGA 61.224 63.158 0.00 0.00 0.00 4.26
179 180 1.761174 GTGAGGGTCCAAGGCTGAA 59.239 57.895 0.00 0.00 0.00 3.02
180 181 0.329596 GTGAGGGTCCAAGGCTGAAT 59.670 55.000 0.00 0.00 0.00 2.57
181 182 1.075601 TGAGGGTCCAAGGCTGAATT 58.924 50.000 0.00 0.00 0.00 2.17
182 183 1.272092 TGAGGGTCCAAGGCTGAATTG 60.272 52.381 0.00 0.00 0.00 2.32
184 185 1.607801 GGGTCCAAGGCTGAATTGGC 61.608 60.000 0.00 0.00 45.69 4.52
185 186 1.607801 GGTCCAAGGCTGAATTGGCC 61.608 60.000 10.16 10.16 45.69 5.36
195 196 2.026915 GCTGAATTGGCCCCAAAAATCT 60.027 45.455 0.00 0.00 39.55 2.40
196 197 3.602483 CTGAATTGGCCCCAAAAATCTG 58.398 45.455 0.00 4.20 39.55 2.90
197 198 2.290197 TGAATTGGCCCCAAAAATCTGC 60.290 45.455 0.00 0.00 39.55 4.26
200 201 1.613332 GGCCCCAAAAATCTGCCCT 60.613 57.895 0.00 0.00 36.07 5.19
276 278 3.537793 GTTCAGTTGAACCGATGGAAC 57.462 47.619 12.82 0.00 46.42 3.62
283 285 0.107654 GAACCGATGGAACCCTCCTG 60.108 60.000 0.00 0.00 42.94 3.86
284 286 1.562672 AACCGATGGAACCCTCCTGG 61.563 60.000 0.00 0.00 42.94 4.45
371 374 1.060698 GTGCAAAGTCTTATCCGCGTC 59.939 52.381 4.92 0.00 0.00 5.19
383 386 3.900388 ATCCGCGTCTAGTATCTTCAC 57.100 47.619 4.92 0.00 0.00 3.18
435 438 1.970114 CTGCCTGCCTTGGTCACTG 60.970 63.158 0.00 0.00 0.00 3.66
484 498 4.504916 CGCCCTGCTCCTGAGACG 62.505 72.222 0.00 0.00 0.00 4.18
487 501 1.984570 CCCTGCTCCTGAGACGGAA 60.985 63.158 0.00 0.00 31.44 4.30
509 542 3.518998 CGATCGGACGAGCACCCT 61.519 66.667 7.38 0.00 35.09 4.34
542 582 2.420022 CGTATCACAGAAAAGCAAGGGG 59.580 50.000 0.00 0.00 0.00 4.79
547 587 3.966665 TCACAGAAAAGCAAGGGGAAAAT 59.033 39.130 0.00 0.00 0.00 1.82
549 589 5.010617 TCACAGAAAAGCAAGGGGAAAATAC 59.989 40.000 0.00 0.00 0.00 1.89
553 593 5.543790 AGAAAAGCAAGGGGAAAATACACAT 59.456 36.000 0.00 0.00 0.00 3.21
554 594 4.806640 AAGCAAGGGGAAAATACACATG 57.193 40.909 0.00 0.00 0.00 3.21
555 595 3.099141 AGCAAGGGGAAAATACACATGG 58.901 45.455 0.00 0.00 0.00 3.66
556 596 3.096092 GCAAGGGGAAAATACACATGGA 58.904 45.455 0.00 0.00 0.00 3.41
580 631 5.759506 TCGATACAAGCAAGGAACAAAAA 57.240 34.783 0.00 0.00 0.00 1.94
626 684 1.212751 GCAACGAATCAACCCCAGC 59.787 57.895 0.00 0.00 0.00 4.85
627 685 1.523154 GCAACGAATCAACCCCAGCA 61.523 55.000 0.00 0.00 0.00 4.41
628 686 0.523072 CAACGAATCAACCCCAGCAG 59.477 55.000 0.00 0.00 0.00 4.24
629 687 1.244019 AACGAATCAACCCCAGCAGC 61.244 55.000 0.00 0.00 0.00 5.25
630 688 2.409870 CGAATCAACCCCAGCAGCC 61.410 63.158 0.00 0.00 0.00 4.85
631 689 1.000396 GAATCAACCCCAGCAGCCT 60.000 57.895 0.00 0.00 0.00 4.58
632 690 1.000396 AATCAACCCCAGCAGCCTC 60.000 57.895 0.00 0.00 0.00 4.70
633 691 1.792757 AATCAACCCCAGCAGCCTCA 61.793 55.000 0.00 0.00 0.00 3.86
634 692 2.490270 ATCAACCCCAGCAGCCTCAC 62.490 60.000 0.00 0.00 0.00 3.51
676 734 0.879090 GATTCCACGACACCCAAACC 59.121 55.000 0.00 0.00 0.00 3.27
677 735 0.538746 ATTCCACGACACCCAAACCC 60.539 55.000 0.00 0.00 0.00 4.11
678 736 1.923006 TTCCACGACACCCAAACCCA 61.923 55.000 0.00 0.00 0.00 4.51
679 737 1.896660 CCACGACACCCAAACCCAG 60.897 63.158 0.00 0.00 0.00 4.45
682 740 2.203294 GACACCCAAACCCAGCGT 60.203 61.111 0.00 0.00 0.00 5.07
683 741 1.826487 GACACCCAAACCCAGCGTT 60.826 57.895 0.00 0.00 35.70 4.84
684 742 0.535553 GACACCCAAACCCAGCGTTA 60.536 55.000 0.00 0.00 33.05 3.18
685 743 0.820482 ACACCCAAACCCAGCGTTAC 60.820 55.000 0.00 0.00 33.05 2.50
686 744 1.598685 ACCCAAACCCAGCGTTACG 60.599 57.895 0.00 0.00 33.05 3.18
687 745 2.329614 CCCAAACCCAGCGTTACGG 61.330 63.158 6.94 0.00 33.05 4.02
688 746 1.598685 CCAAACCCAGCGTTACGGT 60.599 57.895 2.83 2.83 38.40 4.83
689 747 1.571215 CCAAACCCAGCGTTACGGTC 61.571 60.000 6.46 0.00 34.62 4.79
690 748 0.881159 CAAACCCAGCGTTACGGTCA 60.881 55.000 6.46 0.00 34.62 4.02
692 750 2.030490 AACCCAGCGTTACGGTCACA 62.030 55.000 6.46 0.00 34.62 3.58
693 751 2.025418 CCCAGCGTTACGGTCACAC 61.025 63.158 6.46 0.00 34.62 3.82
694 752 2.369629 CCAGCGTTACGGTCACACG 61.370 63.158 6.46 0.00 34.62 4.49
697 755 2.841389 CGTTACGGTCACACGCAC 59.159 61.111 0.00 0.00 37.37 5.34
698 756 1.945169 CGTTACGGTCACACGCACA 60.945 57.895 0.00 0.00 37.37 4.57
699 757 1.850640 GTTACGGTCACACGCACAG 59.149 57.895 0.00 0.00 37.37 3.66
700 758 1.952133 TTACGGTCACACGCACAGC 60.952 57.895 0.00 0.00 37.37 4.40
701 759 2.630592 TTACGGTCACACGCACAGCA 62.631 55.000 0.00 0.00 37.37 4.41
702 760 3.705638 CGGTCACACGCACAGCAG 61.706 66.667 0.00 0.00 0.00 4.24
703 761 4.017877 GGTCACACGCACAGCAGC 62.018 66.667 0.00 0.00 0.00 5.25
704 762 3.271586 GTCACACGCACAGCAGCA 61.272 61.111 0.00 0.00 0.00 4.41
705 763 2.968697 TCACACGCACAGCAGCAG 60.969 61.111 0.00 0.00 0.00 4.24
706 764 4.678269 CACACGCACAGCAGCAGC 62.678 66.667 0.00 0.00 42.56 5.25
708 766 3.956317 CACGCACAGCAGCAGCAA 61.956 61.111 3.17 0.00 45.49 3.91
714 772 1.753848 ACAGCAGCAGCAAACACCA 60.754 52.632 3.17 0.00 45.49 4.17
773 831 4.724602 TCGCACGGCAGCAGACTC 62.725 66.667 0.00 0.00 0.00 3.36
775 833 4.385405 GCACGGCAGCAGACTCCT 62.385 66.667 0.00 0.00 0.00 3.69
776 834 3.006756 GCACGGCAGCAGACTCCTA 62.007 63.158 0.00 0.00 0.00 2.94
777 835 1.140589 CACGGCAGCAGACTCCTAG 59.859 63.158 0.00 0.00 0.00 3.02
778 836 2.105930 CGGCAGCAGACTCCTAGC 59.894 66.667 0.00 0.00 0.00 3.42
779 837 2.422231 CGGCAGCAGACTCCTAGCT 61.422 63.158 0.00 0.00 39.63 3.32
783 841 2.589494 AGCAGACTCCTAGCTGTGG 58.411 57.895 0.00 0.00 37.20 4.17
784 842 0.975040 AGCAGACTCCTAGCTGTGGG 60.975 60.000 0.00 0.00 37.20 4.61
785 843 0.972983 GCAGACTCCTAGCTGTGGGA 60.973 60.000 0.00 0.17 34.66 4.37
786 844 0.820871 CAGACTCCTAGCTGTGGGAC 59.179 60.000 0.00 0.00 0.00 4.46
787 845 0.681564 AGACTCCTAGCTGTGGGACG 60.682 60.000 0.00 0.00 0.00 4.79
788 846 2.286127 GACTCCTAGCTGTGGGACGC 62.286 65.000 0.00 0.00 40.62 5.19
842 901 4.261801 CACCAACCACCGAGAAATATTCT 58.738 43.478 0.00 0.00 44.21 2.40
843 902 4.094887 CACCAACCACCGAGAAATATTCTG 59.905 45.833 0.00 0.00 40.87 3.02
847 906 6.373216 CCAACCACCGAGAAATATTCTGTTTA 59.627 38.462 0.00 0.00 40.87 2.01
849 908 8.458843 CAACCACCGAGAAATATTCTGTTTATT 58.541 33.333 0.00 0.00 40.87 1.40
851 910 8.458843 ACCACCGAGAAATATTCTGTTTATTTG 58.541 33.333 0.00 0.00 40.87 2.32
852 911 7.915397 CCACCGAGAAATATTCTGTTTATTTGG 59.085 37.037 0.00 0.00 40.87 3.28
855 914 7.850982 CCGAGAAATATTCTGTTTATTTGGACG 59.149 37.037 0.00 0.00 40.87 4.79
860 919 8.801882 AATATTCTGTTTATTTGGACGGAGAA 57.198 30.769 0.00 0.00 33.09 2.87
882 941 2.282180 TGAAGAAACTGCCGCCCC 60.282 61.111 0.00 0.00 0.00 5.80
899 958 4.424430 CGCCGAGGCAAAACGACG 62.424 66.667 15.03 0.00 42.06 5.12
900 959 4.736631 GCCGAGGCAAAACGACGC 62.737 66.667 9.58 0.00 41.49 5.19
903 962 2.556287 GAGGCAAAACGACGCAGG 59.444 61.111 0.00 0.00 0.00 4.85
963 1090 2.851071 CGGCTCCTCGACCCTCATC 61.851 68.421 0.00 0.00 0.00 2.92
1089 1219 2.034053 CGCTCTCTCAGGTGGAGTAATC 59.966 54.545 0.00 0.00 44.40 1.75
1090 1220 2.364002 GCTCTCTCAGGTGGAGTAATCC 59.636 54.545 1.18 1.18 44.40 3.01
1093 1223 0.105039 CTCAGGTGGAGTAATCCGGC 59.895 60.000 4.49 0.00 38.90 6.13
1094 1224 1.146263 CAGGTGGAGTAATCCGGCC 59.854 63.158 12.91 12.91 0.00 6.13
1099 1229 1.072331 GTGGAGTAATCCGGCCATCAT 59.928 52.381 2.24 0.00 32.26 2.45
1101 1231 1.339151 GGAGTAATCCGGCCATCATCC 60.339 57.143 2.24 0.00 0.00 3.51
1121 1251 0.676151 CAGGTTCTTGCTCCAGCCTC 60.676 60.000 0.00 0.00 41.18 4.70
1337 1481 3.407046 CTACTTCCCGGACGCGTCC 62.407 68.421 41.75 41.75 46.18 4.79
1653 1797 0.727122 GGACGACTCGGTGTACAACG 60.727 60.000 27.17 27.17 44.11 4.10
1732 1876 2.967397 CGACGCCCTCAGGTAACA 59.033 61.111 0.00 0.00 41.41 2.41
1748 1906 1.768684 AACAGTCGGTCACCATGGCT 61.769 55.000 13.04 0.00 0.00 4.75
1798 1956 2.286294 GCATCACAGGTGTTCGATCATC 59.714 50.000 0.00 0.00 0.00 2.92
1799 1957 2.672961 TCACAGGTGTTCGATCATCC 57.327 50.000 3.09 5.32 0.00 3.51
1800 1958 1.899142 TCACAGGTGTTCGATCATCCA 59.101 47.619 3.09 0.00 0.00 3.41
1801 1959 2.002586 CACAGGTGTTCGATCATCCAC 58.997 52.381 3.09 0.00 0.00 4.02
1840 1998 4.189188 GCGCCATTCTGCAGCCAG 62.189 66.667 9.47 0.11 40.54 4.85
1845 2003 2.044252 ATTCTGCAGCCAGCCAGG 60.044 61.111 9.47 0.00 44.83 4.45
1846 2004 3.657038 ATTCTGCAGCCAGCCAGGG 62.657 63.158 9.47 0.00 44.83 4.45
2387 2560 3.973657 TCCTCACGACAACTCTGTAAAC 58.026 45.455 0.00 0.00 35.30 2.01
2391 2564 4.699637 TCACGACAACTCTGTAAACCATT 58.300 39.130 0.00 0.00 35.30 3.16
2393 2566 3.739300 ACGACAACTCTGTAAACCATTCG 59.261 43.478 0.00 0.00 35.30 3.34
2404 2577 7.026562 TCTGTAAACCATTCGTGCATTTTATG 58.973 34.615 0.00 0.00 0.00 1.90
2407 2580 6.704512 AAACCATTCGTGCATTTTATGAAC 57.295 33.333 0.00 0.00 35.37 3.18
2596 2769 6.258230 TCAGTATGTTCTTGCCAATTTCAG 57.742 37.500 0.00 0.00 37.40 3.02
2606 2779 4.090761 TGCCAATTTCAGTCTCTCAACT 57.909 40.909 0.00 0.00 0.00 3.16
2612 2785 6.538021 CCAATTTCAGTCTCTCAACTATGGAG 59.462 42.308 0.00 0.00 0.00 3.86
2613 2786 7.326454 CAATTTCAGTCTCTCAACTATGGAGA 58.674 38.462 0.00 0.00 39.01 3.71
2664 2837 3.897239 ACCTCACCAATTTCAGTGTTGA 58.103 40.909 0.00 0.00 35.45 3.18
2707 2880 3.801698 TGCTAATCTGACTGCAATCTCC 58.198 45.455 0.00 0.00 32.12 3.71
2710 2883 3.996921 AATCTGACTGCAATCTCCAGT 57.003 42.857 0.00 0.00 45.61 4.00
2752 2925 1.874231 CTGATGTCAGATCTGCATGCC 59.126 52.381 26.77 17.84 46.59 4.40
2757 2930 2.425668 TGTCAGATCTGCATGCCAAATG 59.574 45.455 18.36 7.90 0.00 2.32
2759 2932 3.129813 GTCAGATCTGCATGCCAAATGAA 59.870 43.478 18.36 0.00 0.00 2.57
2761 2934 4.112634 CAGATCTGCATGCCAAATGAAAG 58.887 43.478 16.68 2.89 0.00 2.62
2764 2937 4.811969 TCTGCATGCCAAATGAAAGATT 57.188 36.364 16.68 0.00 0.00 2.40
2765 2938 4.500127 TCTGCATGCCAAATGAAAGATTG 58.500 39.130 16.68 0.00 0.00 2.67
2766 2939 4.221041 TCTGCATGCCAAATGAAAGATTGA 59.779 37.500 16.68 0.00 0.00 2.57
2767 2940 4.500127 TGCATGCCAAATGAAAGATTGAG 58.500 39.130 16.68 0.00 0.00 3.02
2768 2941 4.020928 TGCATGCCAAATGAAAGATTGAGT 60.021 37.500 16.68 0.00 0.00 3.41
2772 2945 5.916318 TGCCAAATGAAAGATTGAGTGTTT 58.084 33.333 0.00 0.00 0.00 2.83
2773 2946 6.347696 TGCCAAATGAAAGATTGAGTGTTTT 58.652 32.000 0.00 0.00 0.00 2.43
2775 2948 6.479660 GCCAAATGAAAGATTGAGTGTTTTGA 59.520 34.615 0.00 0.00 0.00 2.69
2778 2951 9.858247 CAAATGAAAGATTGAGTGTTTTGATTG 57.142 29.630 0.00 0.00 0.00 2.67
2779 2952 9.820725 AAATGAAAGATTGAGTGTTTTGATTGA 57.179 25.926 0.00 0.00 0.00 2.57
2780 2953 9.820725 AATGAAAGATTGAGTGTTTTGATTGAA 57.179 25.926 0.00 0.00 0.00 2.69
2781 2954 8.861033 TGAAAGATTGAGTGTTTTGATTGAAG 57.139 30.769 0.00 0.00 0.00 3.02
2782 2955 8.685427 TGAAAGATTGAGTGTTTTGATTGAAGA 58.315 29.630 0.00 0.00 0.00 2.87
2783 2956 9.520204 GAAAGATTGAGTGTTTTGATTGAAGAA 57.480 29.630 0.00 0.00 0.00 2.52
2784 2957 9.874205 AAAGATTGAGTGTTTTGATTGAAGAAA 57.126 25.926 0.00 0.00 0.00 2.52
2786 2959 9.472361 AGATTGAGTGTTTTGATTGAAGAAATG 57.528 29.630 0.00 0.00 0.00 2.32
2787 2960 9.252962 GATTGAGTGTTTTGATTGAAGAAATGT 57.747 29.630 0.00 0.00 0.00 2.71
2792 2971 8.177013 AGTGTTTTGATTGAAGAAATGTTTTGC 58.823 29.630 0.00 0.00 0.00 3.68
2883 3062 7.124298 TGGCATCTCTGTAAGTAGAAACATACT 59.876 37.037 0.00 0.00 37.61 2.12
2908 3089 7.361889 ACATGATTATTTGCGCAAAAATGAA 57.638 28.000 36.42 26.17 33.56 2.57
2912 3093 9.843334 ATGATTATTTGCGCAAAAATGAATTTT 57.157 22.222 36.42 20.23 41.93 1.82
2956 3141 5.794894 ACTACTGGTCGACAAAATGAAGAT 58.205 37.500 18.91 0.00 0.00 2.40
2961 3146 3.189287 GGTCGACAAAATGAAGATGCTGT 59.811 43.478 18.91 0.00 0.00 4.40
3136 3321 1.747355 GCTGTTGCTGCATTATCCAGT 59.253 47.619 1.84 0.00 36.03 4.00
3161 3346 4.263435 TGATGCTGCTCAATTGACATACA 58.737 39.130 3.38 9.40 0.00 2.29
3162 3347 4.885325 TGATGCTGCTCAATTGACATACAT 59.115 37.500 3.38 13.00 0.00 2.29
3163 3348 4.625972 TGCTGCTCAATTGACATACATG 57.374 40.909 3.38 0.00 0.00 3.21
3164 3349 4.011698 TGCTGCTCAATTGACATACATGT 58.988 39.130 3.38 2.69 45.16 3.21
3165 3350 4.460034 TGCTGCTCAATTGACATACATGTT 59.540 37.500 2.30 0.00 41.95 2.71
3166 3351 4.796830 GCTGCTCAATTGACATACATGTTG 59.203 41.667 2.30 5.06 41.95 3.33
3167 3352 4.735985 TGCTCAATTGACATACATGTTGC 58.264 39.130 2.30 3.11 41.95 4.17
3168 3353 4.217983 TGCTCAATTGACATACATGTTGCA 59.782 37.500 2.30 5.84 41.95 4.08
3169 3354 5.162794 GCTCAATTGACATACATGTTGCAA 58.837 37.500 2.30 10.82 41.95 4.08
3170 3355 5.808540 GCTCAATTGACATACATGTTGCAAT 59.191 36.000 2.30 12.33 41.95 3.56
3171 3356 6.311935 GCTCAATTGACATACATGTTGCAATT 59.688 34.615 20.77 20.77 41.70 2.32
3174 3359 7.821595 AATTGACATACATGTTGCAATTGAG 57.178 32.000 22.84 9.60 40.57 3.02
3175 3360 4.735985 TGACATACATGTTGCAATTGAGC 58.264 39.130 10.34 0.00 41.95 4.26
3176 3361 4.460034 TGACATACATGTTGCAATTGAGCT 59.540 37.500 10.34 0.00 41.95 4.09
3261 3446 4.739137 GCAGAACAACAATTTACAGGGCAA 60.739 41.667 0.00 0.00 0.00 4.52
3314 3499 3.329386 ACATTCAAGTGAGTGATCACCG 58.671 45.455 22.21 4.66 41.26 4.94
3323 3508 3.612860 GTGAGTGATCACCGACATTGTAC 59.387 47.826 22.21 5.04 34.74 2.90
3335 3520 9.341078 TCACCGACATTGTACTACAGTATTATA 57.659 33.333 0.00 0.00 32.54 0.98
3362 3547 7.630242 TTAGTGGAGCATTCTATTTTTGGAG 57.370 36.000 0.00 0.00 0.00 3.86
3363 3548 5.819991 AGTGGAGCATTCTATTTTTGGAGA 58.180 37.500 0.00 0.00 0.00 3.71
3364 3549 5.884792 AGTGGAGCATTCTATTTTTGGAGAG 59.115 40.000 0.00 0.00 0.00 3.20
3365 3550 4.641989 TGGAGCATTCTATTTTTGGAGAGC 59.358 41.667 0.00 0.00 0.00 4.09
3368 3553 6.205101 AGCATTCTATTTTTGGAGAGCTTG 57.795 37.500 0.00 0.00 0.00 4.01
3370 3555 5.803967 GCATTCTATTTTTGGAGAGCTTGTG 59.196 40.000 0.00 0.00 0.00 3.33
3371 3556 6.349611 GCATTCTATTTTTGGAGAGCTTGTGA 60.350 38.462 0.00 0.00 0.00 3.58
3470 3655 2.143122 TGTCGCAAGGAACAGAACATC 58.857 47.619 0.00 0.00 38.47 3.06
3499 3684 3.718434 TCATGGGATAGTGAGAAGCCATT 59.282 43.478 0.00 0.00 0.00 3.16
3524 3710 4.141846 ACAGACAACAGTGTGAGAATGAGT 60.142 41.667 0.00 0.00 38.41 3.41
3525 3711 5.069119 ACAGACAACAGTGTGAGAATGAGTA 59.931 40.000 0.00 0.00 38.41 2.59
3526 3712 5.403766 CAGACAACAGTGTGAGAATGAGTAC 59.596 44.000 0.00 0.00 38.41 2.73
3527 3713 5.303078 AGACAACAGTGTGAGAATGAGTACT 59.697 40.000 0.00 0.00 38.41 2.73
3528 3714 5.292765 ACAACAGTGTGAGAATGAGTACTG 58.707 41.667 0.00 0.00 40.84 2.74
3529 3715 3.919216 ACAGTGTGAGAATGAGTACTGC 58.081 45.455 0.00 0.00 39.18 4.40
3577 3763 7.597386 AGACAATGTTGGCTTATTTCTCTTTC 58.403 34.615 0.00 0.00 46.60 2.62
3645 3847 8.446599 ACAAAGGTGTTACTATTGTATATGCC 57.553 34.615 0.00 0.00 32.58 4.40
3671 3873 2.717580 ACACTATGAACTTCGTCGCA 57.282 45.000 0.00 0.00 0.00 5.10
3835 4043 5.585500 TTTTCACGATTACAAGGAAGACG 57.415 39.130 0.00 0.00 0.00 4.18
3844 4052 0.396811 CAAGGAAGACGGACCCAAGT 59.603 55.000 0.00 0.00 0.00 3.16
3889 4097 3.044305 GCAGCTGGCGTCGAAACT 61.044 61.111 17.12 0.00 0.00 2.66
3940 4148 2.161211 GCACTCTTCCTCAATGCAGTTC 59.839 50.000 0.00 0.00 36.30 3.01
3973 4181 6.234920 TCATTCGGTAGAATTTTCTTCCACA 58.765 36.000 14.09 2.88 44.11 4.17
3988 4196 1.972075 TCCACACCATAGTCCGAAACA 59.028 47.619 0.00 0.00 0.00 2.83
4057 4265 6.825213 TCTCAGCACATACATAGCAATTTTCT 59.175 34.615 0.00 0.00 0.00 2.52
4101 4309 6.369065 GGGATGTACTTACACTCAACTTCTTG 59.631 42.308 0.00 0.00 39.30 3.02
4381 5126 1.471287 AGCCCGCGGATAAAAAGAAAC 59.529 47.619 30.73 0.47 0.00 2.78
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.698855 GCATTAGAGAGGTTGCCAGA 57.301 50.000 0.00 0.00 0.00 3.86
4 5 0.107654 ACCGGCATTAGAGAGGTTGC 60.108 55.000 0.00 0.00 0.00 4.17
5 6 1.066143 ACACCGGCATTAGAGAGGTTG 60.066 52.381 0.00 0.00 32.04 3.77
6 7 1.276622 ACACCGGCATTAGAGAGGTT 58.723 50.000 0.00 0.00 32.04 3.50
7 8 1.276622 AACACCGGCATTAGAGAGGT 58.723 50.000 0.00 0.00 35.24 3.85
8 9 2.093447 AGAAACACCGGCATTAGAGAGG 60.093 50.000 0.00 0.00 0.00 3.69
9 10 3.252974 AGAAACACCGGCATTAGAGAG 57.747 47.619 0.00 0.00 0.00 3.20
10 11 3.430374 GCTAGAAACACCGGCATTAGAGA 60.430 47.826 0.00 0.00 0.00 3.10
11 12 2.866762 GCTAGAAACACCGGCATTAGAG 59.133 50.000 0.00 0.00 0.00 2.43
12 13 2.235155 TGCTAGAAACACCGGCATTAGA 59.765 45.455 0.00 0.00 0.00 2.10
13 14 2.627945 TGCTAGAAACACCGGCATTAG 58.372 47.619 0.00 0.00 0.00 1.73
14 15 2.772077 TGCTAGAAACACCGGCATTA 57.228 45.000 0.00 0.00 0.00 1.90
15 16 2.128771 ATGCTAGAAACACCGGCATT 57.871 45.000 0.00 0.00 40.12 3.56
16 17 2.017049 GAATGCTAGAAACACCGGCAT 58.983 47.619 0.00 0.00 44.09 4.40
17 18 1.003118 AGAATGCTAGAAACACCGGCA 59.997 47.619 0.00 0.00 37.32 5.69
18 19 1.739067 AGAATGCTAGAAACACCGGC 58.261 50.000 0.00 0.00 0.00 6.13
19 20 4.330074 CAGTAAGAATGCTAGAAACACCGG 59.670 45.833 0.00 0.00 0.00 5.28
20 21 5.168569 TCAGTAAGAATGCTAGAAACACCG 58.831 41.667 0.00 0.00 0.00 4.94
21 22 6.818644 TCATCAGTAAGAATGCTAGAAACACC 59.181 38.462 0.00 0.00 0.00 4.16
22 23 7.201565 GGTCATCAGTAAGAATGCTAGAAACAC 60.202 40.741 0.00 0.00 0.00 3.32
23 24 6.818644 GGTCATCAGTAAGAATGCTAGAAACA 59.181 38.462 0.00 0.00 0.00 2.83
24 25 7.010923 CAGGTCATCAGTAAGAATGCTAGAAAC 59.989 40.741 0.00 0.00 0.00 2.78
25 26 7.044181 CAGGTCATCAGTAAGAATGCTAGAAA 58.956 38.462 0.00 0.00 0.00 2.52
26 27 6.577103 CAGGTCATCAGTAAGAATGCTAGAA 58.423 40.000 0.00 0.00 0.00 2.10
27 28 5.452496 GCAGGTCATCAGTAAGAATGCTAGA 60.452 44.000 0.00 0.00 0.00 2.43
28 29 4.749099 GCAGGTCATCAGTAAGAATGCTAG 59.251 45.833 0.00 0.00 0.00 3.42
29 30 4.443457 GGCAGGTCATCAGTAAGAATGCTA 60.443 45.833 0.00 0.00 32.41 3.49
30 31 3.539604 GCAGGTCATCAGTAAGAATGCT 58.460 45.455 0.00 0.00 0.00 3.79
31 32 2.615912 GGCAGGTCATCAGTAAGAATGC 59.384 50.000 0.00 0.00 0.00 3.56
32 33 4.125703 GAGGCAGGTCATCAGTAAGAATG 58.874 47.826 0.00 0.00 0.00 2.67
33 34 3.776969 TGAGGCAGGTCATCAGTAAGAAT 59.223 43.478 0.00 0.00 31.11 2.40
34 35 3.173151 TGAGGCAGGTCATCAGTAAGAA 58.827 45.455 0.00 0.00 31.11 2.52
35 36 2.820178 TGAGGCAGGTCATCAGTAAGA 58.180 47.619 0.00 0.00 31.11 2.10
36 37 3.834489 ATGAGGCAGGTCATCAGTAAG 57.166 47.619 0.00 0.00 39.03 2.34
37 38 3.776969 AGAATGAGGCAGGTCATCAGTAA 59.223 43.478 0.00 0.00 39.03 2.24
38 39 3.133542 CAGAATGAGGCAGGTCATCAGTA 59.866 47.826 0.00 0.00 39.03 2.74
39 40 2.093075 CAGAATGAGGCAGGTCATCAGT 60.093 50.000 0.00 0.00 39.03 3.41
40 41 2.169978 TCAGAATGAGGCAGGTCATCAG 59.830 50.000 0.00 0.00 42.56 2.90
41 42 2.190538 TCAGAATGAGGCAGGTCATCA 58.809 47.619 0.00 0.00 42.56 3.07
42 43 2.996249 TCAGAATGAGGCAGGTCATC 57.004 50.000 0.00 0.00 42.56 2.92
54 55 3.139770 AGGGAGGGATCCAAATCAGAATG 59.860 47.826 15.23 0.00 33.21 2.67
55 56 3.397282 GAGGGAGGGATCCAAATCAGAAT 59.603 47.826 15.23 0.00 33.21 2.40
56 57 2.780010 GAGGGAGGGATCCAAATCAGAA 59.220 50.000 15.23 0.00 33.21 3.02
57 58 2.021639 AGAGGGAGGGATCCAAATCAGA 60.022 50.000 15.23 0.00 33.21 3.27
58 59 2.416638 AGAGGGAGGGATCCAAATCAG 58.583 52.381 15.23 0.00 33.21 2.90
59 60 2.594536 AGAGGGAGGGATCCAAATCA 57.405 50.000 15.23 0.00 33.21 2.57
60 61 3.592865 ACTAGAGGGAGGGATCCAAATC 58.407 50.000 15.23 8.16 0.00 2.17
61 62 3.734344 ACTAGAGGGAGGGATCCAAAT 57.266 47.619 15.23 0.00 0.00 2.32
62 63 3.246350 TGAACTAGAGGGAGGGATCCAAA 60.246 47.826 15.23 0.00 0.00 3.28
63 64 2.317900 TGAACTAGAGGGAGGGATCCAA 59.682 50.000 15.23 0.00 0.00 3.53
64 65 1.937350 TGAACTAGAGGGAGGGATCCA 59.063 52.381 15.23 0.00 0.00 3.41
65 66 2.777459 TGAACTAGAGGGAGGGATCC 57.223 55.000 1.92 1.92 0.00 3.36
66 67 3.850752 TGATGAACTAGAGGGAGGGATC 58.149 50.000 0.00 0.00 0.00 3.36
67 68 4.286813 TTGATGAACTAGAGGGAGGGAT 57.713 45.455 0.00 0.00 0.00 3.85
68 69 3.776731 TTGATGAACTAGAGGGAGGGA 57.223 47.619 0.00 0.00 0.00 4.20
69 70 4.164988 ACATTTGATGAACTAGAGGGAGGG 59.835 45.833 0.00 0.00 0.00 4.30
70 71 5.363939 GACATTTGATGAACTAGAGGGAGG 58.636 45.833 0.00 0.00 0.00 4.30
71 72 5.046529 CGACATTTGATGAACTAGAGGGAG 58.953 45.833 0.00 0.00 0.00 4.30
72 73 4.141937 CCGACATTTGATGAACTAGAGGGA 60.142 45.833 0.00 0.00 0.00 4.20
73 74 4.122776 CCGACATTTGATGAACTAGAGGG 58.877 47.826 0.00 0.00 0.00 4.30
74 75 3.557595 GCCGACATTTGATGAACTAGAGG 59.442 47.826 0.00 0.00 0.00 3.69
75 76 3.557595 GGCCGACATTTGATGAACTAGAG 59.442 47.826 0.00 0.00 0.00 2.43
76 77 3.531538 GGCCGACATTTGATGAACTAGA 58.468 45.455 0.00 0.00 0.00 2.43
77 78 2.285220 CGGCCGACATTTGATGAACTAG 59.715 50.000 24.07 0.00 0.00 2.57
78 79 2.276201 CGGCCGACATTTGATGAACTA 58.724 47.619 24.07 0.00 0.00 2.24
79 80 1.086696 CGGCCGACATTTGATGAACT 58.913 50.000 24.07 0.00 0.00 3.01
80 81 0.523335 GCGGCCGACATTTGATGAAC 60.523 55.000 33.48 1.16 0.00 3.18
81 82 0.676466 AGCGGCCGACATTTGATGAA 60.676 50.000 33.48 0.00 0.00 2.57
82 83 0.676466 AAGCGGCCGACATTTGATGA 60.676 50.000 33.48 0.00 0.00 2.92
83 84 0.523968 CAAGCGGCCGACATTTGATG 60.524 55.000 33.48 10.75 0.00 3.07
84 85 0.960364 ACAAGCGGCCGACATTTGAT 60.960 50.000 33.48 13.65 0.00 2.57
85 86 1.573829 GACAAGCGGCCGACATTTGA 61.574 55.000 33.48 0.00 0.00 2.69
86 87 1.154225 GACAAGCGGCCGACATTTG 60.154 57.895 33.48 26.20 0.00 2.32
87 88 0.036765 TAGACAAGCGGCCGACATTT 60.037 50.000 33.48 14.14 0.00 2.32
88 89 0.036765 TTAGACAAGCGGCCGACATT 60.037 50.000 33.48 17.43 0.00 2.71
89 90 0.178068 ATTAGACAAGCGGCCGACAT 59.822 50.000 33.48 11.33 0.00 3.06
90 91 0.739462 CATTAGACAAGCGGCCGACA 60.739 55.000 33.48 2.03 0.00 4.35
91 92 1.429148 CCATTAGACAAGCGGCCGAC 61.429 60.000 33.48 20.78 0.00 4.79
92 93 1.153449 CCATTAGACAAGCGGCCGA 60.153 57.895 33.48 5.03 0.00 5.54
93 94 2.180204 CCCATTAGACAAGCGGCCG 61.180 63.158 24.05 24.05 0.00 6.13
94 95 0.179468 TACCCATTAGACAAGCGGCC 59.821 55.000 0.00 0.00 0.00 6.13
95 96 1.138266 TCTACCCATTAGACAAGCGGC 59.862 52.381 0.00 0.00 31.28 6.53
96 97 2.224066 CCTCTACCCATTAGACAAGCGG 60.224 54.545 0.00 0.00 32.96 5.52
97 98 2.693591 TCCTCTACCCATTAGACAAGCG 59.306 50.000 0.00 0.00 32.96 4.68
98 99 3.961408 TCTCCTCTACCCATTAGACAAGC 59.039 47.826 0.00 0.00 32.96 4.01
99 100 4.586841 CCTCTCCTCTACCCATTAGACAAG 59.413 50.000 0.00 0.00 32.96 3.16
100 101 4.232122 TCCTCTCCTCTACCCATTAGACAA 59.768 45.833 0.00 0.00 32.96 3.18
101 102 3.792114 TCCTCTCCTCTACCCATTAGACA 59.208 47.826 0.00 0.00 32.96 3.41
102 103 4.105057 TCTCCTCTCCTCTACCCATTAGAC 59.895 50.000 0.00 0.00 32.96 2.59
103 104 4.316872 TCTCCTCTCCTCTACCCATTAGA 58.683 47.826 0.00 0.00 35.38 2.10
104 105 4.733077 TCTCCTCTCCTCTACCCATTAG 57.267 50.000 0.00 0.00 0.00 1.73
105 106 4.140900 CCTTCTCCTCTCCTCTACCCATTA 60.141 50.000 0.00 0.00 0.00 1.90
106 107 3.374762 CCTTCTCCTCTCCTCTACCCATT 60.375 52.174 0.00 0.00 0.00 3.16
107 108 2.178984 CCTTCTCCTCTCCTCTACCCAT 59.821 54.545 0.00 0.00 0.00 4.00
108 109 1.571457 CCTTCTCCTCTCCTCTACCCA 59.429 57.143 0.00 0.00 0.00 4.51
109 110 1.854280 TCCTTCTCCTCTCCTCTACCC 59.146 57.143 0.00 0.00 0.00 3.69
110 111 3.139397 TCATCCTTCTCCTCTCCTCTACC 59.861 52.174 0.00 0.00 0.00 3.18
111 112 4.447138 TCATCCTTCTCCTCTCCTCTAC 57.553 50.000 0.00 0.00 0.00 2.59
112 113 4.729370 TCTTCATCCTTCTCCTCTCCTCTA 59.271 45.833 0.00 0.00 0.00 2.43
113 114 3.531397 TCTTCATCCTTCTCCTCTCCTCT 59.469 47.826 0.00 0.00 0.00 3.69
114 115 3.891366 CTCTTCATCCTTCTCCTCTCCTC 59.109 52.174 0.00 0.00 0.00 3.71
115 116 3.374098 CCTCTTCATCCTTCTCCTCTCCT 60.374 52.174 0.00 0.00 0.00 3.69
116 117 2.965147 CCTCTTCATCCTTCTCCTCTCC 59.035 54.545 0.00 0.00 0.00 3.71
117 118 3.909732 TCCTCTTCATCCTTCTCCTCTC 58.090 50.000 0.00 0.00 0.00 3.20
118 119 4.344938 TTCCTCTTCATCCTTCTCCTCT 57.655 45.455 0.00 0.00 0.00 3.69
119 120 5.428184 TTTTCCTCTTCATCCTTCTCCTC 57.572 43.478 0.00 0.00 0.00 3.71
120 121 5.311913 ACTTTTTCCTCTTCATCCTTCTCCT 59.688 40.000 0.00 0.00 0.00 3.69
121 122 5.414144 CACTTTTTCCTCTTCATCCTTCTCC 59.586 44.000 0.00 0.00 0.00 3.71
122 123 5.414144 CCACTTTTTCCTCTTCATCCTTCTC 59.586 44.000 0.00 0.00 0.00 2.87
123 124 5.320277 CCACTTTTTCCTCTTCATCCTTCT 58.680 41.667 0.00 0.00 0.00 2.85
124 125 4.460731 CCCACTTTTTCCTCTTCATCCTTC 59.539 45.833 0.00 0.00 0.00 3.46
125 126 4.140924 ACCCACTTTTTCCTCTTCATCCTT 60.141 41.667 0.00 0.00 0.00 3.36
126 127 3.399305 ACCCACTTTTTCCTCTTCATCCT 59.601 43.478 0.00 0.00 0.00 3.24
127 128 3.767711 ACCCACTTTTTCCTCTTCATCC 58.232 45.455 0.00 0.00 0.00 3.51
128 129 4.083271 CGAACCCACTTTTTCCTCTTCATC 60.083 45.833 0.00 0.00 0.00 2.92
129 130 3.821033 CGAACCCACTTTTTCCTCTTCAT 59.179 43.478 0.00 0.00 0.00 2.57
130 131 3.211045 CGAACCCACTTTTTCCTCTTCA 58.789 45.455 0.00 0.00 0.00 3.02
131 132 3.003378 CACGAACCCACTTTTTCCTCTTC 59.997 47.826 0.00 0.00 0.00 2.87
132 133 2.949644 CACGAACCCACTTTTTCCTCTT 59.050 45.455 0.00 0.00 0.00 2.85
133 134 2.572290 CACGAACCCACTTTTTCCTCT 58.428 47.619 0.00 0.00 0.00 3.69
134 135 1.607148 CCACGAACCCACTTTTTCCTC 59.393 52.381 0.00 0.00 0.00 3.71
135 136 1.064240 ACCACGAACCCACTTTTTCCT 60.064 47.619 0.00 0.00 0.00 3.36
136 137 1.066454 CACCACGAACCCACTTTTTCC 59.934 52.381 0.00 0.00 0.00 3.13
137 138 1.066454 CCACCACGAACCCACTTTTTC 59.934 52.381 0.00 0.00 0.00 2.29
138 139 1.107945 CCACCACGAACCCACTTTTT 58.892 50.000 0.00 0.00 0.00 1.94
139 140 1.388837 GCCACCACGAACCCACTTTT 61.389 55.000 0.00 0.00 0.00 2.27
140 141 1.826487 GCCACCACGAACCCACTTT 60.826 57.895 0.00 0.00 0.00 2.66
141 142 2.203294 GCCACCACGAACCCACTT 60.203 61.111 0.00 0.00 0.00 3.16
142 143 4.265056 GGCCACCACGAACCCACT 62.265 66.667 0.00 0.00 0.00 4.00
147 148 4.612412 TCACCGGCCACCACGAAC 62.612 66.667 0.00 0.00 0.00 3.95
148 149 4.308458 CTCACCGGCCACCACGAA 62.308 66.667 0.00 0.00 0.00 3.85
156 157 4.410400 CTTGGACCCTCACCGGCC 62.410 72.222 0.00 0.00 0.00 6.13
157 158 4.410400 CCTTGGACCCTCACCGGC 62.410 72.222 0.00 0.00 0.00 6.13
158 159 4.410400 GCCTTGGACCCTCACCGG 62.410 72.222 0.00 0.00 0.00 5.28
159 160 3.322466 AGCCTTGGACCCTCACCG 61.322 66.667 0.00 0.00 0.00 4.94
160 161 1.779061 TTCAGCCTTGGACCCTCACC 61.779 60.000 0.00 0.00 0.00 4.02
161 162 0.329596 ATTCAGCCTTGGACCCTCAC 59.670 55.000 0.00 0.00 0.00 3.51
162 163 1.075601 AATTCAGCCTTGGACCCTCA 58.924 50.000 0.00 0.00 0.00 3.86
163 164 1.467920 CAATTCAGCCTTGGACCCTC 58.532 55.000 0.00 0.00 0.00 4.30
164 165 0.040204 CCAATTCAGCCTTGGACCCT 59.960 55.000 0.00 0.00 44.95 4.34
165 166 1.607801 GCCAATTCAGCCTTGGACCC 61.608 60.000 6.27 0.00 44.95 4.46
166 167 1.607801 GGCCAATTCAGCCTTGGACC 61.608 60.000 0.00 3.61 44.68 4.46
174 175 2.026915 AGATTTTTGGGGCCAATTCAGC 60.027 45.455 4.39 0.00 35.70 4.26
175 176 3.602483 CAGATTTTTGGGGCCAATTCAG 58.398 45.455 4.39 0.00 35.70 3.02
176 177 2.290197 GCAGATTTTTGGGGCCAATTCA 60.290 45.455 4.39 0.00 35.70 2.57
177 178 2.358957 GCAGATTTTTGGGGCCAATTC 58.641 47.619 4.39 0.00 35.70 2.17
178 179 1.004628 GGCAGATTTTTGGGGCCAATT 59.995 47.619 4.39 0.00 44.01 2.32
179 180 0.620030 GGCAGATTTTTGGGGCCAAT 59.380 50.000 4.39 0.00 44.01 3.16
180 181 1.487850 GGGCAGATTTTTGGGGCCAA 61.488 55.000 4.39 0.00 46.37 4.52
181 182 1.917787 GGGCAGATTTTTGGGGCCA 60.918 57.895 4.39 0.00 46.37 5.36
182 183 0.325203 TAGGGCAGATTTTTGGGGCC 60.325 55.000 0.00 0.00 45.57 5.80
183 184 1.114627 CTAGGGCAGATTTTTGGGGC 58.885 55.000 0.00 0.00 0.00 5.80
184 185 2.379005 GACTAGGGCAGATTTTTGGGG 58.621 52.381 0.00 0.00 0.00 4.96
185 186 2.379005 GGACTAGGGCAGATTTTTGGG 58.621 52.381 0.00 0.00 0.00 4.12
186 187 2.017049 CGGACTAGGGCAGATTTTTGG 58.983 52.381 0.00 0.00 0.00 3.28
187 188 2.017049 CCGGACTAGGGCAGATTTTTG 58.983 52.381 0.00 0.00 0.00 2.44
188 189 2.420058 CCGGACTAGGGCAGATTTTT 57.580 50.000 0.00 0.00 0.00 1.94
197 198 2.186125 GGAAACGCCGGACTAGGG 59.814 66.667 5.05 0.00 0.00 3.53
229 231 0.322366 TGATTGGCACCGCAATCTCA 60.322 50.000 12.65 0.00 38.31 3.27
291 293 2.027073 GCGCGGAGATGTGTCAACA 61.027 57.895 8.83 0.00 41.58 3.33
348 351 1.398390 GCGGATAAGACTTTGCACAGG 59.602 52.381 4.63 0.00 0.00 4.00
353 356 1.641577 AGACGCGGATAAGACTTTGC 58.358 50.000 12.47 0.00 0.00 3.68
371 374 5.240623 AGCCGAATCTCTGTGAAGATACTAG 59.759 44.000 0.00 0.00 34.90 2.57
415 418 3.970410 TGACCAAGGCAGGCAGGG 61.970 66.667 9.83 6.43 0.00 4.45
416 419 2.674380 GTGACCAAGGCAGGCAGG 60.674 66.667 0.00 0.00 0.00 4.85
417 420 1.970114 CAGTGACCAAGGCAGGCAG 60.970 63.158 0.00 0.00 0.00 4.85
418 421 2.113774 CAGTGACCAAGGCAGGCA 59.886 61.111 0.00 0.00 0.00 4.75
419 422 2.674380 CCAGTGACCAAGGCAGGC 60.674 66.667 0.00 0.00 0.00 4.85
420 423 1.002868 CTCCAGTGACCAAGGCAGG 60.003 63.158 0.00 0.00 0.00 4.85
421 424 1.002868 CCTCCAGTGACCAAGGCAG 60.003 63.158 0.00 0.00 0.00 4.85
422 425 1.352622 AACCTCCAGTGACCAAGGCA 61.353 55.000 0.00 0.00 31.79 4.75
423 426 0.606673 GAACCTCCAGTGACCAAGGC 60.607 60.000 0.00 0.00 31.79 4.35
435 438 1.228154 AACTGCCCAACGAACCTCC 60.228 57.895 0.00 0.00 0.00 4.30
474 488 0.388649 CGTTGGTTCCGTCTCAGGAG 60.389 60.000 0.00 0.00 41.98 3.69
484 498 0.801067 CTCGTCCGATCGTTGGTTCC 60.801 60.000 15.09 0.00 0.00 3.62
487 501 2.181021 GCTCGTCCGATCGTTGGT 59.819 61.111 15.09 0.00 0.00 3.67
509 542 9.946165 CTTTTCTGTGATACGTATATGTGTAGA 57.054 33.333 8.34 4.51 0.00 2.59
542 582 7.587757 GCTTGTATCGATTCCATGTGTATTTTC 59.412 37.037 1.71 0.00 0.00 2.29
547 587 5.017294 TGCTTGTATCGATTCCATGTGTA 57.983 39.130 1.71 0.00 0.00 2.90
549 589 4.260907 CCTTGCTTGTATCGATTCCATGTG 60.261 45.833 1.71 0.00 0.00 3.21
553 593 3.904800 TCCTTGCTTGTATCGATTCCA 57.095 42.857 1.71 0.00 0.00 3.53
554 594 3.938963 TGTTCCTTGCTTGTATCGATTCC 59.061 43.478 1.71 0.00 0.00 3.01
555 595 5.545658 TTGTTCCTTGCTTGTATCGATTC 57.454 39.130 1.71 0.00 0.00 2.52
556 596 5.957842 TTTGTTCCTTGCTTGTATCGATT 57.042 34.783 1.71 0.00 0.00 3.34
580 631 2.928396 CCTCCCTGGACGTGGGTT 60.928 66.667 9.15 0.00 44.84 4.11
604 659 0.953960 GGGGTTGATTCGTTGCGTCT 60.954 55.000 0.00 0.00 0.00 4.18
626 684 2.608988 AGGGTGAGGGTGAGGCTG 60.609 66.667 0.00 0.00 0.00 4.85
627 685 2.284995 GAGGGTGAGGGTGAGGCT 60.285 66.667 0.00 0.00 0.00 4.58
628 686 2.607750 TGAGGGTGAGGGTGAGGC 60.608 66.667 0.00 0.00 0.00 4.70
629 687 2.650116 CGTGAGGGTGAGGGTGAGG 61.650 68.421 0.00 0.00 0.00 3.86
630 688 2.973899 CGTGAGGGTGAGGGTGAG 59.026 66.667 0.00 0.00 0.00 3.51
676 734 2.369629 CGTGTGACCGTAACGCTGG 61.370 63.158 0.00 0.00 0.00 4.85
677 735 3.143712 CGTGTGACCGTAACGCTG 58.856 61.111 0.00 0.00 0.00 5.18
682 740 1.952133 GCTGTGCGTGTGACCGTAA 60.952 57.895 0.00 0.00 0.00 3.18
683 741 2.355363 GCTGTGCGTGTGACCGTA 60.355 61.111 0.00 0.00 0.00 4.02
684 742 4.522689 TGCTGTGCGTGTGACCGT 62.523 61.111 0.00 0.00 0.00 4.83
685 743 3.705638 CTGCTGTGCGTGTGACCG 61.706 66.667 0.00 0.00 0.00 4.79
686 744 4.017877 GCTGCTGTGCGTGTGACC 62.018 66.667 0.00 0.00 0.00 4.02
687 745 3.232645 CTGCTGCTGTGCGTGTGAC 62.233 63.158 0.00 0.00 35.36 3.67
688 746 2.968697 CTGCTGCTGTGCGTGTGA 60.969 61.111 0.00 0.00 35.36 3.58
689 747 4.678269 GCTGCTGCTGTGCGTGTG 62.678 66.667 8.53 0.00 36.03 3.82
692 750 3.211245 TTTGCTGCTGCTGTGCGT 61.211 55.556 17.00 0.00 40.48 5.24
693 751 2.728383 GTTTGCTGCTGCTGTGCG 60.728 61.111 17.00 0.00 40.48 5.34
694 752 1.947642 GTGTTTGCTGCTGCTGTGC 60.948 57.895 17.00 7.08 40.48 4.57
695 753 1.299620 GGTGTTTGCTGCTGCTGTG 60.300 57.895 17.00 0.00 40.48 3.66
696 754 1.731433 CTGGTGTTTGCTGCTGCTGT 61.731 55.000 17.00 0.00 40.48 4.40
697 755 1.007734 CTGGTGTTTGCTGCTGCTG 60.008 57.895 17.00 0.77 40.48 4.41
698 756 2.198287 CCTGGTGTTTGCTGCTGCT 61.198 57.895 17.00 0.00 40.48 4.24
699 757 2.337532 CCTGGTGTTTGCTGCTGC 59.662 61.111 8.89 8.89 40.20 5.25
700 758 1.521450 CTCCCTGGTGTTTGCTGCTG 61.521 60.000 0.00 0.00 0.00 4.41
701 759 1.228367 CTCCCTGGTGTTTGCTGCT 60.228 57.895 0.00 0.00 0.00 4.24
702 760 1.228245 TCTCCCTGGTGTTTGCTGC 60.228 57.895 0.00 0.00 0.00 5.25
703 761 1.230635 CGTCTCCCTGGTGTTTGCTG 61.231 60.000 0.00 0.00 0.00 4.41
704 762 1.071471 CGTCTCCCTGGTGTTTGCT 59.929 57.895 0.00 0.00 0.00 3.91
705 763 2.617274 GCGTCTCCCTGGTGTTTGC 61.617 63.158 0.00 0.00 0.00 3.68
706 764 1.966451 GGCGTCTCCCTGGTGTTTG 60.966 63.158 0.00 0.00 0.00 2.93
707 765 1.990160 TTGGCGTCTCCCTGGTGTTT 61.990 55.000 0.00 0.00 0.00 2.83
708 766 2.448582 TTGGCGTCTCCCTGGTGTT 61.449 57.895 0.00 0.00 0.00 3.32
714 772 3.322466 CCCAGTTGGCGTCTCCCT 61.322 66.667 0.00 0.00 0.00 4.20
762 820 1.143620 CAGCTAGGAGTCTGCTGCC 59.856 63.158 15.98 0.00 45.76 4.85
768 826 0.681564 CGTCCCACAGCTAGGAGTCT 60.682 60.000 5.97 0.00 31.17 3.24
769 827 1.810532 CGTCCCACAGCTAGGAGTC 59.189 63.158 5.97 0.00 31.17 3.36
770 828 2.352032 GCGTCCCACAGCTAGGAGT 61.352 63.158 5.97 0.00 31.17 3.85
771 829 2.351244 TGCGTCCCACAGCTAGGAG 61.351 63.158 5.97 0.36 31.17 3.69
772 830 2.283604 TGCGTCCCACAGCTAGGA 60.284 61.111 5.97 0.65 0.00 2.94
773 831 2.125512 GTGCGTCCCACAGCTAGG 60.126 66.667 0.00 0.00 44.06 3.02
783 841 3.998672 TTCCGGGTGAGTGCGTCC 61.999 66.667 0.00 0.00 0.00 4.79
784 842 2.737376 GTTCCGGGTGAGTGCGTC 60.737 66.667 0.00 0.00 0.00 5.19
785 843 4.657824 CGTTCCGGGTGAGTGCGT 62.658 66.667 0.00 0.00 0.00 5.24
808 866 1.441311 GTTGGTGGCCCACAAGTTG 59.559 57.895 17.22 0.00 41.67 3.16
811 869 2.123511 TGGTTGGTGGCCCACAAG 60.124 61.111 17.22 0.00 41.67 3.16
842 901 4.041198 AGAGGTTCTCCGTCCAAATAAACA 59.959 41.667 0.00 0.00 39.05 2.83
843 902 4.392138 CAGAGGTTCTCCGTCCAAATAAAC 59.608 45.833 0.00 0.00 39.05 2.01
847 906 2.257207 TCAGAGGTTCTCCGTCCAAAT 58.743 47.619 0.00 0.00 39.05 2.32
849 908 1.618837 CTTCAGAGGTTCTCCGTCCAA 59.381 52.381 0.00 0.00 39.05 3.53
851 910 1.546961 TCTTCAGAGGTTCTCCGTCC 58.453 55.000 0.00 0.00 39.05 4.79
852 911 3.006003 AGTTTCTTCAGAGGTTCTCCGTC 59.994 47.826 0.00 0.00 39.05 4.79
855 914 3.070748 GCAGTTTCTTCAGAGGTTCTCC 58.929 50.000 0.00 0.00 0.00 3.71
860 919 0.603975 GCGGCAGTTTCTTCAGAGGT 60.604 55.000 0.00 0.00 0.00 3.85
886 945 2.556287 CCTGCGTCGTTTTGCCTC 59.444 61.111 0.00 0.00 0.00 4.70
956 1083 3.197790 CGGCAACTGCGATGAGGG 61.198 66.667 0.00 0.00 43.26 4.30
1061 1191 4.504916 CTGAGAGAGCGTGGGCGG 62.505 72.222 0.00 0.00 46.35 6.13
1066 1196 1.247419 ACTCCACCTGAGAGAGCGTG 61.247 60.000 0.00 0.00 44.42 5.34
1089 1219 2.965716 GAACCTGGGATGATGGCCGG 62.966 65.000 0.00 0.00 0.00 6.13
1090 1220 1.526917 GAACCTGGGATGATGGCCG 60.527 63.158 0.00 0.00 0.00 6.13
1093 1223 1.064166 AGCAAGAACCTGGGATGATGG 60.064 52.381 0.00 0.00 0.00 3.51
1094 1224 2.295885 GAGCAAGAACCTGGGATGATG 58.704 52.381 0.00 0.00 0.00 3.07
1099 1229 2.069776 CTGGAGCAAGAACCTGGGA 58.930 57.895 0.00 0.00 0.00 4.37
1101 1231 1.676967 GGCTGGAGCAAGAACCTGG 60.677 63.158 0.20 0.00 44.36 4.45
1129 1259 1.884075 CGGTGAGGTCCATGAACGGA 61.884 60.000 0.00 0.00 0.00 4.69
1130 1260 1.447838 CGGTGAGGTCCATGAACGG 60.448 63.158 0.00 0.00 0.00 4.44
1337 1481 4.451150 TAGCAGTGCTTCCCGGCG 62.451 66.667 25.23 0.00 40.44 6.46
1341 1485 3.876300 CACGTAGCAGTGCTTCCC 58.124 61.111 25.23 10.81 40.44 3.97
1653 1797 0.683504 TAGGAGGAGAAGTCGGTGGC 60.684 60.000 0.00 0.00 0.00 5.01
1714 1858 2.508663 GTTACCTGAGGGCGTCGC 60.509 66.667 9.22 9.22 35.63 5.19
1716 1860 0.108756 GACTGTTACCTGAGGGCGTC 60.109 60.000 2.38 0.00 35.63 5.19
1717 1861 1.874345 CGACTGTTACCTGAGGGCGT 61.874 60.000 2.38 0.00 35.63 5.68
1720 1864 0.531200 GACCGACTGTTACCTGAGGG 59.469 60.000 2.38 0.00 38.88 4.30
1732 1876 2.665000 CAGCCATGGTGACCGACT 59.335 61.111 14.67 0.00 32.22 4.18
1748 1906 1.300963 GGAGAACAGAGGCATGGCA 59.699 57.895 22.64 0.00 0.00 4.92
1755 1913 0.392193 ATTGCAGCGGAGAACAGAGG 60.392 55.000 0.00 0.00 0.00 3.69
1756 1914 1.005340 GATTGCAGCGGAGAACAGAG 58.995 55.000 0.00 0.00 0.00 3.35
1779 1937 2.501316 TGGATGATCGAACACCTGTGAT 59.499 45.455 3.94 0.00 0.00 3.06
1780 1938 1.899142 TGGATGATCGAACACCTGTGA 59.101 47.619 3.94 0.00 0.00 3.58
1781 1939 2.002586 GTGGATGATCGAACACCTGTG 58.997 52.381 0.00 0.00 0.00 3.66
1782 1940 1.404181 CGTGGATGATCGAACACCTGT 60.404 52.381 0.00 0.00 0.00 4.00
1798 1956 1.267038 CGCGTGATCAAGAATTCGTGG 60.267 52.381 19.30 5.99 0.00 4.94
1799 1957 1.653609 TCGCGTGATCAAGAATTCGTG 59.346 47.619 13.18 14.41 0.00 4.35
1800 1958 1.990799 TCGCGTGATCAAGAATTCGT 58.009 45.000 13.18 0.00 0.00 3.85
1801 1959 3.368321 TTTCGCGTGATCAAGAATTCG 57.632 42.857 13.18 6.45 0.00 3.34
1840 1998 0.681243 GGTTGAACTCATCCCCTGGC 60.681 60.000 0.00 0.00 31.18 4.85
1845 2003 1.553704 AGTACCGGTTGAACTCATCCC 59.446 52.381 15.04 0.00 33.26 3.85
1846 2004 2.618053 CAGTACCGGTTGAACTCATCC 58.382 52.381 15.04 0.00 33.46 3.51
1951 2115 3.692406 AGTCCTCGCCGGAACACC 61.692 66.667 5.05 0.00 45.32 4.16
2029 2193 1.066587 GAGCGCCAGGTAGTAGCTG 59.933 63.158 20.26 20.26 42.96 4.24
2179 2343 2.525629 TTGGTCTGCCCGGACAGA 60.526 61.111 17.41 17.41 44.32 3.41
2182 2346 1.153349 GATCTTGGTCTGCCCGGAC 60.153 63.158 0.73 0.00 35.15 4.79
2304 2468 5.289595 TGCATTGATCGGATCTGTTAGTAC 58.710 41.667 18.16 0.00 0.00 2.73
2307 2471 3.186001 GCTGCATTGATCGGATCTGTTAG 59.814 47.826 18.16 12.09 0.00 2.34
2311 2475 1.531578 CTGCTGCATTGATCGGATCTG 59.468 52.381 18.16 10.54 0.00 2.90
2360 2530 1.343465 GAGTTGTCGTGAGGAAAGGGA 59.657 52.381 0.00 0.00 0.00 4.20
2393 2566 5.722051 GCAGCAAATCGTTCATAAAATGCAC 60.722 40.000 0.00 0.00 35.11 4.57
2404 2577 2.778659 GATCACTGCAGCAAATCGTTC 58.221 47.619 15.27 0.00 0.00 3.95
2407 2580 0.027194 CCGATCACTGCAGCAAATCG 59.973 55.000 26.57 26.57 39.05 3.34
2408 2581 0.248377 GCCGATCACTGCAGCAAATC 60.248 55.000 15.27 12.96 0.00 2.17
2409 2582 0.961857 TGCCGATCACTGCAGCAAAT 60.962 50.000 15.27 4.55 32.84 2.32
2505 2678 2.258726 GCAGGAAACACCGGTCCAC 61.259 63.158 2.59 0.00 44.74 4.02
2570 2743 6.660521 TGAAATTGGCAAGAACATACTGATCT 59.339 34.615 5.96 0.00 30.32 2.75
2586 2759 5.065731 CCATAGTTGAGAGACTGAAATTGGC 59.934 44.000 0.00 0.00 0.00 4.52
2596 2769 5.068987 AGCTCATTCTCCATAGTTGAGAGAC 59.931 44.000 2.60 0.00 39.84 3.36
2606 2779 3.954200 TGCACAAAGCTCATTCTCCATA 58.046 40.909 0.00 0.00 45.94 2.74
2612 2785 3.122948 CAGCAAATGCACAAAGCTCATTC 59.877 43.478 8.28 0.00 45.94 2.67
2613 2786 3.064207 CAGCAAATGCACAAAGCTCATT 58.936 40.909 8.28 0.00 45.94 2.57
2707 2880 3.871006 TGTGTCAAGAAGCTTACACACTG 59.129 43.478 22.88 5.90 45.27 3.66
2752 2925 9.858247 CAATCAAAACACTCAATCTTTCATTTG 57.142 29.630 0.00 0.00 0.00 2.32
2757 2930 9.520204 TTCTTCAATCAAAACACTCAATCTTTC 57.480 29.630 0.00 0.00 0.00 2.62
2761 2934 9.252962 ACATTTCTTCAATCAAAACACTCAATC 57.747 29.630 0.00 0.00 0.00 2.67
2764 2937 9.434420 AAAACATTTCTTCAATCAAAACACTCA 57.566 25.926 0.00 0.00 0.00 3.41
2765 2938 9.693157 CAAAACATTTCTTCAATCAAAACACTC 57.307 29.630 0.00 0.00 0.00 3.51
2766 2939 8.177013 GCAAAACATTTCTTCAATCAAAACACT 58.823 29.630 0.00 0.00 0.00 3.55
2767 2940 8.177013 AGCAAAACATTTCTTCAATCAAAACAC 58.823 29.630 0.00 0.00 0.00 3.32
2768 2941 8.176365 CAGCAAAACATTTCTTCAATCAAAACA 58.824 29.630 0.00 0.00 0.00 2.83
2772 2945 5.816258 TGCAGCAAAACATTTCTTCAATCAA 59.184 32.000 0.00 0.00 0.00 2.57
2773 2946 5.358090 TGCAGCAAAACATTTCTTCAATCA 58.642 33.333 0.00 0.00 0.00 2.57
2775 2948 4.212636 GCTGCAGCAAAACATTTCTTCAAT 59.787 37.500 33.36 0.00 41.59 2.57
2778 2951 3.183775 CAGCTGCAGCAAAACATTTCTTC 59.816 43.478 38.24 5.78 45.16 2.87
2779 2952 3.128349 CAGCTGCAGCAAAACATTTCTT 58.872 40.909 38.24 12.19 45.16 2.52
2780 2953 2.547218 CCAGCTGCAGCAAAACATTTCT 60.547 45.455 38.24 12.75 45.16 2.52
2781 2954 1.796459 CCAGCTGCAGCAAAACATTTC 59.204 47.619 38.24 7.01 45.16 2.17
2782 2955 1.873698 CCAGCTGCAGCAAAACATTT 58.126 45.000 38.24 14.33 45.16 2.32
2783 2956 0.601841 GCCAGCTGCAGCAAAACATT 60.602 50.000 38.24 15.14 45.16 2.71
2784 2957 1.005394 GCCAGCTGCAGCAAAACAT 60.005 52.632 38.24 15.93 45.16 2.71
2785 2958 1.678598 AAGCCAGCTGCAGCAAAACA 61.679 50.000 38.24 0.00 44.83 2.83
2786 2959 1.068585 AAGCCAGCTGCAGCAAAAC 59.931 52.632 38.24 24.10 44.83 2.43
2787 2960 1.068417 CAAGCCAGCTGCAGCAAAA 59.932 52.632 38.24 0.00 44.83 2.44
2792 2971 3.371063 CCCACAAGCCAGCTGCAG 61.371 66.667 10.11 10.11 44.83 4.41
2883 3062 8.471361 TTCATTTTTGCGCAAATAATCATGTA 57.529 26.923 33.94 20.08 0.00 2.29
2939 3124 3.189287 ACAGCATCTTCATTTTGTCGACC 59.811 43.478 14.12 0.00 0.00 4.79
3059 3244 3.456277 ACAGTTCCTGAAGTCTTGGAAGT 59.544 43.478 4.93 5.66 42.35 3.01
3115 3300 1.066605 CTGGATAATGCAGCAACAGCC 59.933 52.381 0.00 2.70 0.00 4.85
3136 3321 3.349022 TGTCAATTGAGCAGCATCATGA 58.651 40.909 8.80 0.00 0.00 3.07
3161 3346 4.178540 GCAACATAGCTCAATTGCAACAT 58.821 39.130 18.74 0.00 45.38 2.71
3162 3347 3.577667 GCAACATAGCTCAATTGCAACA 58.422 40.909 18.74 0.00 45.38 3.33
3166 3351 5.138800 CAATTGCAACATAGCTCAATTGC 57.861 39.130 17.98 17.73 44.55 3.56
3168 3353 5.105473 AGCTCAATTGCAACATAGCTCAATT 60.105 36.000 19.98 0.00 39.04 2.32
3169 3354 4.401519 AGCTCAATTGCAACATAGCTCAAT 59.598 37.500 19.98 4.59 35.47 2.57
3170 3355 3.760151 AGCTCAATTGCAACATAGCTCAA 59.240 39.130 19.98 0.00 35.47 3.02
3171 3356 3.349927 AGCTCAATTGCAACATAGCTCA 58.650 40.909 19.98 0.00 35.47 4.26
3172 3357 3.950078 GAGCTCAATTGCAACATAGCTC 58.050 45.455 28.53 28.53 46.27 4.09
3173 3358 3.377485 CAGAGCTCAATTGCAACATAGCT 59.623 43.478 23.74 23.74 42.70 3.32
3174 3359 3.128242 ACAGAGCTCAATTGCAACATAGC 59.872 43.478 17.77 16.86 34.99 2.97
3175 3360 4.959596 ACAGAGCTCAATTGCAACATAG 57.040 40.909 17.77 0.00 34.99 2.23
3176 3361 4.616604 GCAACAGAGCTCAATTGCAACATA 60.617 41.667 33.25 0.00 45.38 2.29
3261 3446 0.462047 GTTGAGGCCGATCGGAATGT 60.462 55.000 37.64 17.46 37.50 2.71
3335 3520 9.034800 TCCAAAAATAGAATGCTCCACTAAAAT 57.965 29.630 0.00 0.00 0.00 1.82
3343 3528 4.886489 AGCTCTCCAAAAATAGAATGCTCC 59.114 41.667 0.00 0.00 0.00 4.70
3360 3545 7.461182 AGACTATATGGTATCACAAGCTCTC 57.539 40.000 0.00 0.00 0.00 3.20
3362 3547 6.367422 GCAAGACTATATGGTATCACAAGCTC 59.633 42.308 0.00 0.00 0.00 4.09
3363 3548 6.183361 TGCAAGACTATATGGTATCACAAGCT 60.183 38.462 0.00 0.00 0.00 3.74
3364 3549 5.991606 TGCAAGACTATATGGTATCACAAGC 59.008 40.000 0.00 0.00 0.00 4.01
3365 3550 6.146837 GCTGCAAGACTATATGGTATCACAAG 59.853 42.308 0.00 0.00 34.07 3.16
3368 3553 4.623167 CGCTGCAAGACTATATGGTATCAC 59.377 45.833 0.00 0.00 34.07 3.06
3370 3555 5.060662 TCGCTGCAAGACTATATGGTATC 57.939 43.478 0.00 0.00 34.07 2.24
3371 3556 5.468540 TTCGCTGCAAGACTATATGGTAT 57.531 39.130 0.00 0.00 34.07 2.73
3470 3655 5.541953 TCTCACTATCCCATGAACATCTG 57.458 43.478 0.00 0.00 0.00 2.90
3478 3663 3.784511 ATGGCTTCTCACTATCCCATG 57.215 47.619 0.00 0.00 32.22 3.66
3499 3684 3.885724 TTCTCACACTGTTGTCTGTCA 57.114 42.857 0.00 0.00 31.66 3.58
3528 3714 4.216902 TCTGCCAATTAGATATGCATGTGC 59.783 41.667 10.16 0.89 42.50 4.57
3529 3715 5.952526 TCTGCCAATTAGATATGCATGTG 57.047 39.130 10.16 0.00 0.00 3.21
3544 3730 1.340889 GCCAACATTGTCTTCTGCCAA 59.659 47.619 0.00 0.00 0.00 4.52
3572 3758 5.461032 AAAACATTGGCAATACCGAAAGA 57.539 34.783 13.23 0.00 43.94 2.52
3577 3763 4.987912 AGAACAAAAACATTGGCAATACCG 59.012 37.500 13.23 3.34 43.94 4.02
3713 3915 8.296713 GTGATTGCCTCTCTAACAAATTTACAA 58.703 33.333 0.00 0.00 0.00 2.41
3716 3918 7.994425 TGTGATTGCCTCTCTAACAAATTTA 57.006 32.000 0.00 0.00 0.00 1.40
3835 4043 5.067954 ACTTTGTTATGTGTACTTGGGTCC 58.932 41.667 0.00 0.00 0.00 4.46
3844 4052 6.646653 CAGAGCAGAGAACTTTGTTATGTGTA 59.353 38.462 4.62 0.00 0.00 2.90
3881 4089 1.189403 CGGCGTCAGATAGTTTCGAC 58.811 55.000 0.00 0.00 0.00 4.20
3940 4148 7.553881 AAATTCTACCGAATGAACCATACAG 57.446 36.000 0.00 0.00 39.72 2.74
3973 4181 3.873910 CCATTCTGTTTCGGACTATGGT 58.126 45.455 0.00 0.00 32.54 3.55
3988 4196 4.475016 AGTACATACAAAGGAGGCCATTCT 59.525 41.667 5.01 0.00 0.00 2.40
4057 4265 8.685257 ACATCCCAGGATATAAGAATGACATA 57.315 34.615 0.00 0.00 32.93 2.29
4101 4309 4.769859 TTTTTCATAGGTGGCCGTAAAC 57.230 40.909 0.00 0.00 0.00 2.01
4365 5110 2.786700 GCTCCGTTTCTTTTTATCCGCG 60.787 50.000 0.00 0.00 0.00 6.46
4396 5141 5.220557 TGCGACATTGTTGATGATAACTG 57.779 39.130 8.28 0.00 39.15 3.16
4402 5147 1.811359 TGCATGCGACATTGTTGATGA 59.189 42.857 14.09 0.00 39.15 2.92


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.