Multiple sequence alignment - TraesCS5A01G238500
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G238500 | chr5A | 100.000 | 4460 | 0 | 0 | 1 | 4460 | 454766007 | 454770466 | 0.000000e+00 | 8237 |
1 | TraesCS5A01G238500 | chr5A | 96.196 | 184 | 7 | 0 | 3 | 186 | 473305013 | 473305196 | 7.250000e-78 | 302 |
2 | TraesCS5A01G238500 | chr5B | 95.228 | 2976 | 115 | 8 | 837 | 3796 | 418009201 | 418012165 | 0.000000e+00 | 4684 |
3 | TraesCS5A01G238500 | chr5B | 88.398 | 724 | 32 | 17 | 3762 | 4455 | 418012165 | 418012866 | 0.000000e+00 | 824 |
4 | TraesCS5A01G238500 | chr5B | 89.577 | 662 | 43 | 16 | 197 | 857 | 418008552 | 418009188 | 0.000000e+00 | 817 |
5 | TraesCS5A01G238500 | chr5D | 96.028 | 2820 | 99 | 5 | 837 | 3649 | 353801288 | 353804101 | 0.000000e+00 | 4575 |
6 | TraesCS5A01G238500 | chr5D | 92.342 | 666 | 28 | 10 | 3802 | 4452 | 353804094 | 353804751 | 0.000000e+00 | 926 |
7 | TraesCS5A01G238500 | chr5D | 90.045 | 663 | 36 | 6 | 197 | 855 | 353800639 | 353801275 | 0.000000e+00 | 832 |
8 | TraesCS5A01G238500 | chr5D | 93.814 | 194 | 12 | 0 | 3 | 196 | 41407806 | 41407999 | 4.360000e-75 | 292 |
9 | TraesCS5A01G238500 | chr3A | 88.912 | 487 | 21 | 8 | 1059 | 1529 | 543715934 | 543716403 | 1.800000e-158 | 569 |
10 | TraesCS5A01G238500 | chr6A | 99.492 | 197 | 1 | 0 | 1 | 197 | 585416579 | 585416383 | 4.240000e-95 | 359 |
11 | TraesCS5A01G238500 | chr6A | 96.410 | 195 | 7 | 0 | 3 | 197 | 593803037 | 593802843 | 5.570000e-84 | 322 |
12 | TraesCS5A01G238500 | chr4D | 95.361 | 194 | 8 | 1 | 3 | 196 | 22227923 | 22228115 | 1.560000e-79 | 307 |
13 | TraesCS5A01G238500 | chrUn | 94.845 | 194 | 10 | 0 | 3 | 196 | 24148930 | 24149123 | 2.020000e-78 | 303 |
14 | TraesCS5A01G238500 | chr6D | 93.814 | 194 | 12 | 0 | 3 | 196 | 159019645 | 159019838 | 4.360000e-75 | 292 |
15 | TraesCS5A01G238500 | chr6D | 92.821 | 195 | 12 | 2 | 3 | 196 | 159018860 | 159018667 | 9.450000e-72 | 281 |
16 | TraesCS5A01G238500 | chr1D | 93.299 | 194 | 13 | 0 | 3 | 196 | 481445944 | 481445751 | 2.030000e-73 | 287 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G238500 | chr5A | 454766007 | 454770466 | 4459 | False | 8237.000000 | 8237 | 100.000000 | 1 | 4460 | 1 | chr5A.!!$F1 | 4459 |
1 | TraesCS5A01G238500 | chr5B | 418008552 | 418012866 | 4314 | False | 2108.333333 | 4684 | 91.067667 | 197 | 4455 | 3 | chr5B.!!$F1 | 4258 |
2 | TraesCS5A01G238500 | chr5D | 353800639 | 353804751 | 4112 | False | 2111.000000 | 4575 | 92.805000 | 197 | 4452 | 3 | chr5D.!!$F2 | 4255 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
174 | 175 | 0.108945 | GGACGACGACCCCTAAAGTG | 60.109 | 60.0 | 0.0 | 0.0 | 0.00 | 3.16 | F |
1121 | 1160 | 0.308993 | GCTGTTGTTCCAGACACTGC | 59.691 | 55.0 | 0.0 | 0.0 | 38.18 | 4.40 | F |
2401 | 2440 | 0.608640 | GGAAAGCGAGGTTGGAGAGA | 59.391 | 55.0 | 0.0 | 0.0 | 0.00 | 3.10 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1826 | 1865 | 0.319211 | TTGCTGTGCTTGCAATGCTC | 60.319 | 50.0 | 17.72 | 15.21 | 44.24 | 4.26 | R |
2762 | 2801 | 0.176910 | GTCTGCCTCTTCACTAGCCC | 59.823 | 60.0 | 0.00 | 0.00 | 0.00 | 5.19 | R |
4392 | 4530 | 0.248296 | GAGTACGCCGAGAAGCTCAG | 60.248 | 60.0 | 0.00 | 0.00 | 0.00 | 3.35 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
27 | 28 | 1.555992 | TGGGTCCCACCTGTAATAACG | 59.444 | 52.381 | 6.47 | 0.00 | 38.64 | 3.18 |
28 | 29 | 1.134310 | GGGTCCCACCTGTAATAACGG | 60.134 | 57.143 | 1.78 | 0.00 | 38.64 | 4.44 |
29 | 30 | 1.556451 | GGTCCCACCTGTAATAACGGT | 59.444 | 52.381 | 0.00 | 0.00 | 34.73 | 4.83 |
30 | 31 | 2.419159 | GGTCCCACCTGTAATAACGGTC | 60.419 | 54.545 | 0.00 | 0.00 | 34.73 | 4.79 |
31 | 32 | 2.234414 | GTCCCACCTGTAATAACGGTCA | 59.766 | 50.000 | 0.00 | 0.00 | 32.51 | 4.02 |
32 | 33 | 2.905085 | TCCCACCTGTAATAACGGTCAA | 59.095 | 45.455 | 0.00 | 0.00 | 32.51 | 3.18 |
33 | 34 | 3.004862 | CCCACCTGTAATAACGGTCAAC | 58.995 | 50.000 | 0.00 | 0.00 | 32.51 | 3.18 |
34 | 35 | 3.307199 | CCCACCTGTAATAACGGTCAACT | 60.307 | 47.826 | 0.00 | 0.00 | 32.51 | 3.16 |
35 | 36 | 3.682858 | CCACCTGTAATAACGGTCAACTG | 59.317 | 47.826 | 0.00 | 0.00 | 32.51 | 3.16 |
36 | 37 | 4.561938 | CCACCTGTAATAACGGTCAACTGA | 60.562 | 45.833 | 0.00 | 0.00 | 32.51 | 3.41 |
37 | 38 | 4.992319 | CACCTGTAATAACGGTCAACTGAA | 59.008 | 41.667 | 0.00 | 0.00 | 32.51 | 3.02 |
38 | 39 | 4.992951 | ACCTGTAATAACGGTCAACTGAAC | 59.007 | 41.667 | 0.00 | 0.00 | 30.05 | 3.18 |
46 | 47 | 1.658994 | GGTCAACTGAACGGTCAACA | 58.341 | 50.000 | 3.93 | 0.00 | 31.88 | 3.33 |
47 | 48 | 2.218603 | GGTCAACTGAACGGTCAACAT | 58.781 | 47.619 | 3.93 | 0.00 | 31.88 | 2.71 |
48 | 49 | 2.032030 | GGTCAACTGAACGGTCAACATG | 60.032 | 50.000 | 3.93 | 3.96 | 31.88 | 3.21 |
49 | 50 | 2.612212 | GTCAACTGAACGGTCAACATGT | 59.388 | 45.455 | 3.93 | 0.00 | 31.88 | 3.21 |
50 | 51 | 3.064820 | GTCAACTGAACGGTCAACATGTT | 59.935 | 43.478 | 3.93 | 4.92 | 31.88 | 2.71 |
51 | 52 | 3.692101 | TCAACTGAACGGTCAACATGTTT | 59.308 | 39.130 | 8.77 | 0.00 | 31.88 | 2.83 |
52 | 53 | 4.876679 | TCAACTGAACGGTCAACATGTTTA | 59.123 | 37.500 | 8.77 | 0.00 | 31.88 | 2.01 |
53 | 54 | 5.354513 | TCAACTGAACGGTCAACATGTTTAA | 59.645 | 36.000 | 8.77 | 0.00 | 31.88 | 1.52 |
54 | 55 | 5.821516 | ACTGAACGGTCAACATGTTTAAA | 57.178 | 34.783 | 8.77 | 0.00 | 31.88 | 1.52 |
55 | 56 | 6.385649 | ACTGAACGGTCAACATGTTTAAAT | 57.614 | 33.333 | 8.77 | 0.00 | 31.88 | 1.40 |
56 | 57 | 6.435428 | ACTGAACGGTCAACATGTTTAAATC | 58.565 | 36.000 | 8.77 | 3.90 | 31.88 | 2.17 |
57 | 58 | 5.444983 | TGAACGGTCAACATGTTTAAATCG | 58.555 | 37.500 | 8.77 | 11.85 | 0.00 | 3.34 |
58 | 59 | 5.007823 | TGAACGGTCAACATGTTTAAATCGT | 59.992 | 36.000 | 8.77 | 12.49 | 0.00 | 3.73 |
59 | 60 | 5.427036 | ACGGTCAACATGTTTAAATCGTT | 57.573 | 34.783 | 8.77 | 0.00 | 0.00 | 3.85 |
60 | 61 | 5.823353 | ACGGTCAACATGTTTAAATCGTTT | 58.177 | 33.333 | 8.77 | 0.00 | 0.00 | 3.60 |
61 | 62 | 6.957150 | ACGGTCAACATGTTTAAATCGTTTA | 58.043 | 32.000 | 8.77 | 0.00 | 0.00 | 2.01 |
62 | 63 | 7.416022 | ACGGTCAACATGTTTAAATCGTTTAA | 58.584 | 30.769 | 8.77 | 0.67 | 33.56 | 1.52 |
63 | 64 | 7.914346 | ACGGTCAACATGTTTAAATCGTTTAAA | 59.086 | 29.630 | 8.77 | 9.91 | 41.40 | 1.52 |
78 | 79 | 9.715121 | AAATCGTTTAAACTGTCTATTACCTGA | 57.285 | 29.630 | 16.01 | 2.08 | 0.00 | 3.86 |
79 | 80 | 9.715121 | AATCGTTTAAACTGTCTATTACCTGAA | 57.285 | 29.630 | 16.01 | 0.00 | 0.00 | 3.02 |
80 | 81 | 9.715121 | ATCGTTTAAACTGTCTATTACCTGAAA | 57.285 | 29.630 | 16.01 | 0.00 | 0.00 | 2.69 |
81 | 82 | 8.981647 | TCGTTTAAACTGTCTATTACCTGAAAC | 58.018 | 33.333 | 16.01 | 0.00 | 0.00 | 2.78 |
82 | 83 | 8.985805 | CGTTTAAACTGTCTATTACCTGAAACT | 58.014 | 33.333 | 16.01 | 0.00 | 0.00 | 2.66 |
84 | 85 | 8.842358 | TTAAACTGTCTATTACCTGAAACTGG | 57.158 | 34.615 | 0.00 | 0.00 | 0.00 | 4.00 |
85 | 86 | 6.435292 | AACTGTCTATTACCTGAAACTGGT | 57.565 | 37.500 | 0.00 | 0.00 | 39.06 | 4.00 |
86 | 87 | 7.549147 | AACTGTCTATTACCTGAAACTGGTA | 57.451 | 36.000 | 0.00 | 0.00 | 36.99 | 3.25 |
87 | 88 | 7.171630 | ACTGTCTATTACCTGAAACTGGTAG | 57.828 | 40.000 | 0.00 | 0.00 | 38.72 | 3.18 |
88 | 89 | 6.724905 | ACTGTCTATTACCTGAAACTGGTAGT | 59.275 | 38.462 | 0.00 | 0.00 | 38.72 | 2.73 |
89 | 90 | 7.234988 | ACTGTCTATTACCTGAAACTGGTAGTT | 59.765 | 37.037 | 0.00 | 0.00 | 40.80 | 2.24 |
140 | 141 | 8.686397 | GGTAGTTTTCGACCACTTTTTAAAAA | 57.314 | 30.769 | 12.62 | 12.62 | 43.55 | 1.94 |
141 | 142 | 8.800972 | GGTAGTTTTCGACCACTTTTTAAAAAG | 58.199 | 33.333 | 30.29 | 30.29 | 43.55 | 2.27 |
155 | 156 | 8.628882 | CTTTTTAAAAAGTGGTAGTTCTGTGG | 57.371 | 34.615 | 25.95 | 2.68 | 40.31 | 4.17 |
156 | 157 | 6.702716 | TTTAAAAAGTGGTAGTTCTGTGGG | 57.297 | 37.500 | 0.00 | 0.00 | 0.00 | 4.61 |
157 | 158 | 4.513406 | AAAAAGTGGTAGTTCTGTGGGA | 57.487 | 40.909 | 0.00 | 0.00 | 0.00 | 4.37 |
158 | 159 | 3.487120 | AAAGTGGTAGTTCTGTGGGAC | 57.513 | 47.619 | 0.00 | 0.00 | 0.00 | 4.46 |
159 | 160 | 0.966920 | AGTGGTAGTTCTGTGGGACG | 59.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.79 |
160 | 161 | 0.963962 | GTGGTAGTTCTGTGGGACGA | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
161 | 162 | 0.963962 | TGGTAGTTCTGTGGGACGAC | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
162 | 163 | 0.109412 | GGTAGTTCTGTGGGACGACG | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 5.12 |
163 | 164 | 0.877071 | GTAGTTCTGTGGGACGACGA | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.20 |
164 | 165 | 0.877071 | TAGTTCTGTGGGACGACGAC | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
165 | 166 | 1.372623 | GTTCTGTGGGACGACGACC | 60.373 | 63.158 | 7.89 | 7.89 | 0.00 | 4.79 |
166 | 167 | 2.567497 | TTCTGTGGGACGACGACCC | 61.567 | 63.158 | 25.82 | 25.82 | 46.87 | 4.46 |
167 | 168 | 4.065281 | CTGTGGGACGACGACCCC | 62.065 | 72.222 | 28.56 | 23.26 | 46.21 | 4.95 |
168 | 169 | 4.608774 | TGTGGGACGACGACCCCT | 62.609 | 66.667 | 28.56 | 0.00 | 46.21 | 4.79 |
169 | 170 | 2.361610 | GTGGGACGACGACCCCTA | 60.362 | 66.667 | 28.56 | 11.66 | 46.21 | 3.53 |
170 | 171 | 1.978617 | GTGGGACGACGACCCCTAA | 60.979 | 63.158 | 28.56 | 10.95 | 46.21 | 2.69 |
171 | 172 | 1.228831 | TGGGACGACGACCCCTAAA | 60.229 | 57.895 | 28.56 | 10.60 | 46.21 | 1.85 |
172 | 173 | 1.252904 | TGGGACGACGACCCCTAAAG | 61.253 | 60.000 | 28.56 | 0.00 | 46.21 | 1.85 |
173 | 174 | 1.253593 | GGGACGACGACCCCTAAAGT | 61.254 | 60.000 | 22.79 | 0.00 | 41.38 | 2.66 |
174 | 175 | 0.108945 | GGACGACGACCCCTAAAGTG | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.16 |
175 | 176 | 0.108945 | GACGACGACCCCTAAAGTGG | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
176 | 177 | 0.829182 | ACGACGACCCCTAAAGTGGT | 60.829 | 55.000 | 0.00 | 0.00 | 37.64 | 4.16 |
177 | 178 | 1.176527 | CGACGACCCCTAAAGTGGTA | 58.823 | 55.000 | 0.00 | 0.00 | 34.20 | 3.25 |
178 | 179 | 1.133790 | CGACGACCCCTAAAGTGGTAG | 59.866 | 57.143 | 0.00 | 0.00 | 34.20 | 3.18 |
179 | 180 | 2.174360 | GACGACCCCTAAAGTGGTAGT | 58.826 | 52.381 | 0.00 | 0.00 | 42.23 | 2.73 |
180 | 181 | 2.564504 | GACGACCCCTAAAGTGGTAGTT | 59.435 | 50.000 | 0.00 | 0.00 | 40.05 | 2.24 |
181 | 182 | 2.974794 | ACGACCCCTAAAGTGGTAGTTT | 59.025 | 45.455 | 0.00 | 0.00 | 37.19 | 2.66 |
182 | 183 | 3.392285 | ACGACCCCTAAAGTGGTAGTTTT | 59.608 | 43.478 | 0.00 | 0.00 | 37.19 | 2.43 |
183 | 184 | 4.141413 | ACGACCCCTAAAGTGGTAGTTTTT | 60.141 | 41.667 | 0.00 | 0.00 | 37.19 | 1.94 |
227 | 228 | 3.572682 | CCCCTGGTTAGTCCTTTTCAAAC | 59.427 | 47.826 | 0.00 | 0.00 | 37.07 | 2.93 |
245 | 250 | 7.401484 | TTCAAACAAAATTAACAATCTCGGC | 57.599 | 32.000 | 0.00 | 0.00 | 0.00 | 5.54 |
247 | 252 | 6.980978 | TCAAACAAAATTAACAATCTCGGCAA | 59.019 | 30.769 | 0.00 | 0.00 | 0.00 | 4.52 |
411 | 416 | 1.280421 | AGCCAGAGTAGCCCTCAAAAG | 59.720 | 52.381 | 4.03 | 0.00 | 43.12 | 2.27 |
419 | 424 | 0.779997 | AGCCCTCAAAAGGTCATGGT | 59.220 | 50.000 | 0.00 | 0.00 | 41.59 | 3.55 |
470 | 475 | 7.896383 | TTGCAAAATATAAGTGCCTTATCCT | 57.104 | 32.000 | 0.00 | 0.00 | 37.72 | 3.24 |
479 | 484 | 4.414337 | AGTGCCTTATCCTGAGTTCATC | 57.586 | 45.455 | 0.00 | 0.00 | 0.00 | 2.92 |
533 | 538 | 3.044059 | GATGGCCAGCACGCAGTTC | 62.044 | 63.158 | 18.08 | 0.00 | 41.61 | 3.01 |
538 | 543 | 1.005037 | CCAGCACGCAGTTCACCTA | 60.005 | 57.895 | 0.00 | 0.00 | 41.61 | 3.08 |
542 | 547 | 1.227999 | GCACGCAGTTCACCTAGCAA | 61.228 | 55.000 | 0.00 | 0.00 | 41.61 | 3.91 |
547 | 552 | 2.494059 | GCAGTTCACCTAGCAACTTGA | 58.506 | 47.619 | 0.00 | 0.00 | 30.06 | 3.02 |
553 | 558 | 4.785511 | TCACCTAGCAACTTGACTAGAC | 57.214 | 45.455 | 15.97 | 0.00 | 38.53 | 2.59 |
582 | 587 | 2.736531 | CCAGCACAAAGGGCCAAC | 59.263 | 61.111 | 6.18 | 0.00 | 0.00 | 3.77 |
591 | 596 | 2.429250 | ACAAAGGGCCAACTAACAACAC | 59.571 | 45.455 | 6.18 | 0.00 | 0.00 | 3.32 |
597 | 602 | 4.896482 | AGGGCCAACTAACAACACAAATAA | 59.104 | 37.500 | 6.18 | 0.00 | 0.00 | 1.40 |
631 | 636 | 6.760298 | CAGACGCTCTGCCATCAAATATATAT | 59.240 | 38.462 | 2.75 | 0.00 | 37.72 | 0.86 |
632 | 637 | 7.922811 | CAGACGCTCTGCCATCAAATATATATA | 59.077 | 37.037 | 0.00 | 0.00 | 37.72 | 0.86 |
633 | 638 | 8.646004 | AGACGCTCTGCCATCAAATATATATAT | 58.354 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
634 | 639 | 9.914131 | GACGCTCTGCCATCAAATATATATATA | 57.086 | 33.333 | 5.66 | 4.92 | 0.00 | 0.86 |
739 | 744 | 5.486526 | ACTGCTCTTGTCCTCTTATGAAAG | 58.513 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
894 | 933 | 9.609346 | CATGATTCCTGAACATATATCAGCATA | 57.391 | 33.333 | 10.73 | 1.77 | 42.36 | 3.14 |
977 | 1016 | 9.603298 | CATGATAATTATTTGAACTCACCATCG | 57.397 | 33.333 | 0.00 | 0.00 | 0.00 | 3.84 |
1025 | 1064 | 3.416156 | AGGAACTGAATGTTGAAGGAGC | 58.584 | 45.455 | 0.00 | 0.00 | 39.30 | 4.70 |
1030 | 1069 | 1.270785 | TGAATGTTGAAGGAGCGCAGA | 60.271 | 47.619 | 11.47 | 0.00 | 0.00 | 4.26 |
1114 | 1153 | 4.067896 | ACATCAAGTAGCTGTTGTTCCAG | 58.932 | 43.478 | 0.00 | 0.00 | 35.49 | 3.86 |
1121 | 1160 | 0.308993 | GCTGTTGTTCCAGACACTGC | 59.691 | 55.000 | 0.00 | 0.00 | 38.18 | 4.40 |
1169 | 1208 | 4.016444 | TCAAAGCCTCTTGTTTCTGTTGT | 58.984 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
1344 | 1383 | 9.936329 | ATAGGTTCCCTTACAATTAATGAATGT | 57.064 | 29.630 | 0.00 | 0.00 | 34.61 | 2.71 |
1375 | 1414 | 8.971321 | CAAACAAAGTAGAGGAAAATTGTCATG | 58.029 | 33.333 | 0.00 | 0.00 | 31.19 | 3.07 |
1449 | 1488 | 5.461737 | TGAAAGAAACATTTTTAAGGCAGCG | 59.538 | 36.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1630 | 1669 | 2.185004 | GCCTTGTCTTGGCTCTACAA | 57.815 | 50.000 | 0.00 | 0.00 | 46.38 | 2.41 |
1826 | 1865 | 1.610522 | CCTGGAGAAAGCACAAACTGG | 59.389 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
1890 | 1929 | 5.187186 | ACGATACAAAGAGATACAACAGGGT | 59.813 | 40.000 | 0.00 | 0.00 | 0.00 | 4.34 |
2014 | 2053 | 1.141657 | AGCAGCTTGAGAAGGAACACA | 59.858 | 47.619 | 0.00 | 0.00 | 0.00 | 3.72 |
2043 | 2082 | 7.229506 | GCTTTAATTACACATAGGGAGAATGCT | 59.770 | 37.037 | 0.00 | 0.00 | 0.00 | 3.79 |
2274 | 2313 | 2.995466 | TTCAAAAGCTGAATGGCGAG | 57.005 | 45.000 | 0.00 | 0.00 | 39.20 | 5.03 |
2388 | 2427 | 2.770164 | TACTGCCTGAGAAGGAAAGC | 57.230 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
2401 | 2440 | 0.608640 | GGAAAGCGAGGTTGGAGAGA | 59.391 | 55.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2419 | 2458 | 3.197766 | AGAGAAAGTGCGATCCATGGTTA | 59.802 | 43.478 | 12.58 | 0.00 | 0.00 | 2.85 |
2424 | 2463 | 1.933853 | GTGCGATCCATGGTTAGTGTC | 59.066 | 52.381 | 12.58 | 1.33 | 0.00 | 3.67 |
2460 | 2499 | 2.849294 | AGACCAGGAAAGAGCTTGAC | 57.151 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
2486 | 2525 | 2.224090 | TGAGGACAAACATCGAAACGGA | 60.224 | 45.455 | 0.00 | 0.00 | 31.38 | 4.69 |
2635 | 2674 | 3.005897 | CCAGGAAGAACTGAGAAAGACGA | 59.994 | 47.826 | 0.00 | 0.00 | 40.97 | 4.20 |
2636 | 2675 | 4.322349 | CCAGGAAGAACTGAGAAAGACGAT | 60.322 | 45.833 | 0.00 | 0.00 | 40.97 | 3.73 |
2643 | 2682 | 2.288213 | ACTGAGAAAGACGATGCGTGAA | 60.288 | 45.455 | 0.00 | 0.00 | 41.37 | 3.18 |
2652 | 2691 | 1.617755 | CGATGCGTGAACTCAGCGTT | 61.618 | 55.000 | 3.14 | 0.00 | 35.99 | 4.84 |
2659 | 2698 | 1.792949 | GTGAACTCAGCGTTGTACAGG | 59.207 | 52.381 | 0.00 | 0.00 | 35.56 | 4.00 |
2698 | 2737 | 4.778213 | AAAATGCCCATAGAGCTACAGA | 57.222 | 40.909 | 0.00 | 0.00 | 0.00 | 3.41 |
2720 | 2759 | 4.423625 | AGGCTACTCAAGAAACACAACT | 57.576 | 40.909 | 0.00 | 0.00 | 0.00 | 3.16 |
2762 | 2801 | 1.009829 | GCCTGCGATGAGGTTACAAG | 58.990 | 55.000 | 0.00 | 0.00 | 35.29 | 3.16 |
2769 | 2808 | 2.431057 | CGATGAGGTTACAAGGGCTAGT | 59.569 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2868 | 2907 | 4.333926 | GCGGTTAAAGCATCAGAAGAGATT | 59.666 | 41.667 | 0.00 | 0.00 | 34.19 | 2.40 |
2938 | 2977 | 1.123928 | AGATCCCCAAGCTAACCGAG | 58.876 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
3009 | 3048 | 0.908198 | AGAGAGCAAAGGAAGCCGAT | 59.092 | 50.000 | 0.00 | 0.00 | 0.00 | 4.18 |
3154 | 3193 | 1.424493 | GAGGGACGCGCATGAGAAAG | 61.424 | 60.000 | 5.73 | 0.00 | 0.00 | 2.62 |
3155 | 3194 | 1.741770 | GGGACGCGCATGAGAAAGT | 60.742 | 57.895 | 5.73 | 0.00 | 0.00 | 2.66 |
3171 | 3210 | 3.812053 | AGAAAGTCATCACAGCACAAGAC | 59.188 | 43.478 | 0.00 | 0.00 | 0.00 | 3.01 |
3180 | 3219 | 3.119884 | TCACAGCACAAGACAACAAGTTG | 60.120 | 43.478 | 11.16 | 11.16 | 45.58 | 3.16 |
3213 | 3252 | 2.355197 | GAGCTGAGGAAAAGAAGAGCC | 58.645 | 52.381 | 0.00 | 0.00 | 0.00 | 4.70 |
3240 | 3279 | 2.483288 | CAACATTACACGGCGGGC | 59.517 | 61.111 | 10.14 | 0.00 | 0.00 | 6.13 |
3261 | 3300 | 2.735100 | GCCGATCTCGCGATTCCC | 60.735 | 66.667 | 10.36 | 0.00 | 38.18 | 3.97 |
3263 | 3302 | 2.429236 | CGATCTCGCGATTCCCGG | 60.429 | 66.667 | 10.36 | 0.00 | 39.04 | 5.73 |
3281 | 3320 | 1.338105 | CGGTGTCTGCCTTCTGAATGA | 60.338 | 52.381 | 0.00 | 0.00 | 0.00 | 2.57 |
3282 | 3321 | 2.679059 | CGGTGTCTGCCTTCTGAATGAT | 60.679 | 50.000 | 0.00 | 0.00 | 0.00 | 2.45 |
3315 | 3354 | 1.960040 | TTGATGCAGCGGGATCGTCT | 61.960 | 55.000 | 13.16 | 0.00 | 44.12 | 4.18 |
3325 | 3364 | 1.863267 | GGGATCGTCTGCTTCTCATG | 58.137 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
3357 | 3396 | 1.736365 | GCCTAGGTAGAGCCGACACC | 61.736 | 65.000 | 11.31 | 0.00 | 43.70 | 4.16 |
3399 | 3438 | 3.431725 | CCAAAGGCGCGGAAGTCC | 61.432 | 66.667 | 8.83 | 0.00 | 0.00 | 3.85 |
3447 | 3486 | 7.623630 | TGATGTTCATGAATAGGAAGAAGACA | 58.376 | 34.615 | 12.12 | 1.00 | 0.00 | 3.41 |
3476 | 3515 | 1.798813 | GTGAACCTCCGTAGTTTGCTG | 59.201 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
3485 | 3524 | 5.353394 | TCCGTAGTTTGCTGATTTCCTAT | 57.647 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
3494 | 3533 | 7.446625 | AGTTTGCTGATTTCCTATGGTATGATC | 59.553 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
3592 | 3639 | 1.170290 | TCGTCGGTCTGAGCTTGTCA | 61.170 | 55.000 | 5.23 | 0.00 | 0.00 | 3.58 |
3645 | 3695 | 5.694674 | GAAGCTGTCTTCGTTAGAATCAG | 57.305 | 43.478 | 0.00 | 8.24 | 39.29 | 2.90 |
3646 | 3696 | 5.392767 | AAGCTGTCTTCGTTAGAATCAGA | 57.607 | 39.130 | 13.45 | 0.00 | 38.87 | 3.27 |
3655 | 3705 | 7.702772 | GTCTTCGTTAGAATCAGAAGAAGCATA | 59.297 | 37.037 | 8.12 | 0.00 | 46.94 | 3.14 |
3657 | 3707 | 6.273825 | TCGTTAGAATCAGAAGAAGCATACC | 58.726 | 40.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3665 | 3715 | 4.081420 | TCAGAAGAAGCATACCTCTGAACC | 60.081 | 45.833 | 0.00 | 0.00 | 30.98 | 3.62 |
3669 | 3719 | 3.584848 | AGAAGCATACCTCTGAACCTGTT | 59.415 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
3681 | 3731 | 4.394920 | TCTGAACCTGTTGACAGTGTTTTC | 59.605 | 41.667 | 10.03 | 7.44 | 42.27 | 2.29 |
3714 | 3764 | 8.946085 | TCATTTAGCTTGACGATTTGTTATCTT | 58.054 | 29.630 | 0.00 | 0.00 | 0.00 | 2.40 |
3730 | 3780 | 7.692460 | TGTTATCTTTCACATGAGCATTTCT | 57.308 | 32.000 | 0.00 | 0.00 | 0.00 | 2.52 |
3732 | 3782 | 7.175467 | TGTTATCTTTCACATGAGCATTTCTGT | 59.825 | 33.333 | 0.00 | 0.00 | 0.00 | 3.41 |
3736 | 3786 | 4.548451 | TCACATGAGCATTTCTGTCTCT | 57.452 | 40.909 | 0.00 | 0.00 | 31.13 | 3.10 |
3737 | 3787 | 4.251268 | TCACATGAGCATTTCTGTCTCTG | 58.749 | 43.478 | 0.00 | 0.00 | 31.13 | 3.35 |
3738 | 3788 | 4.020839 | TCACATGAGCATTTCTGTCTCTGA | 60.021 | 41.667 | 0.00 | 0.00 | 31.13 | 3.27 |
3739 | 3789 | 4.876679 | CACATGAGCATTTCTGTCTCTGAT | 59.123 | 41.667 | 0.00 | 0.00 | 31.13 | 2.90 |
3740 | 3790 | 4.876679 | ACATGAGCATTTCTGTCTCTGATG | 59.123 | 41.667 | 0.00 | 0.00 | 31.13 | 3.07 |
3741 | 3791 | 3.870274 | TGAGCATTTCTGTCTCTGATGG | 58.130 | 45.455 | 0.00 | 0.00 | 31.13 | 3.51 |
3742 | 3792 | 3.262660 | TGAGCATTTCTGTCTCTGATGGT | 59.737 | 43.478 | 0.00 | 0.00 | 31.13 | 3.55 |
3743 | 3793 | 4.260170 | GAGCATTTCTGTCTCTGATGGTT | 58.740 | 43.478 | 0.00 | 0.00 | 0.00 | 3.67 |
3744 | 3794 | 4.660168 | AGCATTTCTGTCTCTGATGGTTT | 58.340 | 39.130 | 0.00 | 0.00 | 0.00 | 3.27 |
3745 | 3795 | 4.699257 | AGCATTTCTGTCTCTGATGGTTTC | 59.301 | 41.667 | 0.00 | 0.00 | 0.00 | 2.78 |
3746 | 3796 | 4.142513 | GCATTTCTGTCTCTGATGGTTTCC | 60.143 | 45.833 | 0.00 | 0.00 | 0.00 | 3.13 |
3747 | 3797 | 4.705110 | TTTCTGTCTCTGATGGTTTCCA | 57.295 | 40.909 | 0.00 | 0.00 | 38.19 | 3.53 |
3748 | 3798 | 3.969287 | TCTGTCTCTGATGGTTTCCAG | 57.031 | 47.619 | 0.00 | 0.00 | 36.75 | 3.86 |
3778 | 3840 | 4.088634 | ACTGCTCCCAGAATGCAAATTAA | 58.911 | 39.130 | 0.00 | 0.00 | 41.77 | 1.40 |
3828 | 3921 | 7.784633 | AGAGCTGTCTGAGAATTTATAAAGC | 57.215 | 36.000 | 3.94 | 0.00 | 0.00 | 3.51 |
3886 | 3990 | 9.398538 | TCCTTTTGCTTAAAGTAAGTAAGAACA | 57.601 | 29.630 | 9.86 | 0.00 | 40.55 | 3.18 |
3905 | 4016 | 8.628882 | AAGAACATTTAGCAAAACAACTACAC | 57.371 | 30.769 | 0.00 | 0.00 | 0.00 | 2.90 |
3945 | 4065 | 2.550978 | AGAGAAGTTCACACAACACCG | 58.449 | 47.619 | 5.50 | 0.00 | 0.00 | 4.94 |
3961 | 4081 | 1.462283 | CACCGTTGAATCACTCTGCAG | 59.538 | 52.381 | 7.63 | 7.63 | 0.00 | 4.41 |
3989 | 4109 | 3.704061 | TCCTGCTTGTAAATTTATGGGGC | 59.296 | 43.478 | 0.31 | 5.13 | 0.00 | 5.80 |
4305 | 4437 | 3.365265 | CCACCGCCTTCTGGTTGC | 61.365 | 66.667 | 0.00 | 0.00 | 37.72 | 4.17 |
4311 | 4443 | 2.048222 | CCTTCTGGTTGCGCGAGA | 60.048 | 61.111 | 12.10 | 0.00 | 0.00 | 4.04 |
4319 | 4451 | 3.621805 | TTGCGCGAGAGGTTCCCA | 61.622 | 61.111 | 12.10 | 0.00 | 0.00 | 4.37 |
4320 | 4452 | 3.589654 | TTGCGCGAGAGGTTCCCAG | 62.590 | 63.158 | 12.10 | 0.00 | 0.00 | 4.45 |
4324 | 4456 | 4.821589 | CGAGAGGTTCCCAGCGCC | 62.822 | 72.222 | 2.29 | 0.00 | 0.00 | 6.53 |
4358 | 4496 | 4.057428 | AGCACGCTGACGGTCTCC | 62.057 | 66.667 | 9.88 | 0.00 | 46.04 | 3.71 |
4392 | 4530 | 0.179179 | GTGCTCGTAGTACGTGGACC | 60.179 | 60.000 | 28.26 | 16.08 | 45.86 | 4.46 |
4421 | 4559 | 3.450115 | GCGTACTCCGGGTGCTCT | 61.450 | 66.667 | 0.00 | 0.00 | 36.94 | 4.09 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
7 | 8 | 1.555992 | CGTTATTACAGGTGGGACCCA | 59.444 | 52.381 | 9.95 | 9.95 | 39.75 | 4.51 |
8 | 9 | 1.134310 | CCGTTATTACAGGTGGGACCC | 60.134 | 57.143 | 2.45 | 2.45 | 39.75 | 4.46 |
9 | 10 | 1.556451 | ACCGTTATTACAGGTGGGACC | 59.444 | 52.381 | 0.00 | 0.00 | 36.81 | 4.46 |
10 | 11 | 2.234414 | TGACCGTTATTACAGGTGGGAC | 59.766 | 50.000 | 3.68 | 0.00 | 38.57 | 4.46 |
11 | 12 | 2.538222 | TGACCGTTATTACAGGTGGGA | 58.462 | 47.619 | 3.68 | 0.00 | 38.57 | 4.37 |
12 | 13 | 3.004862 | GTTGACCGTTATTACAGGTGGG | 58.995 | 50.000 | 3.68 | 0.00 | 38.57 | 4.61 |
13 | 14 | 3.682858 | CAGTTGACCGTTATTACAGGTGG | 59.317 | 47.826 | 3.68 | 0.00 | 38.57 | 4.61 |
14 | 15 | 4.562082 | TCAGTTGACCGTTATTACAGGTG | 58.438 | 43.478 | 3.68 | 0.00 | 38.57 | 4.00 |
15 | 16 | 4.877378 | TCAGTTGACCGTTATTACAGGT | 57.123 | 40.909 | 0.00 | 0.00 | 41.63 | 4.00 |
16 | 17 | 4.090930 | CGTTCAGTTGACCGTTATTACAGG | 59.909 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
17 | 18 | 4.090930 | CCGTTCAGTTGACCGTTATTACAG | 59.909 | 45.833 | 0.00 | 0.00 | 0.00 | 2.74 |
18 | 19 | 3.989167 | CCGTTCAGTTGACCGTTATTACA | 59.011 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
19 | 20 | 3.989817 | ACCGTTCAGTTGACCGTTATTAC | 59.010 | 43.478 | 0.00 | 0.00 | 0.00 | 1.89 |
20 | 21 | 4.236935 | GACCGTTCAGTTGACCGTTATTA | 58.763 | 43.478 | 0.00 | 0.00 | 0.00 | 0.98 |
21 | 22 | 3.062042 | GACCGTTCAGTTGACCGTTATT | 58.938 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
22 | 23 | 2.036217 | TGACCGTTCAGTTGACCGTTAT | 59.964 | 45.455 | 0.00 | 0.00 | 0.00 | 1.89 |
23 | 24 | 1.408340 | TGACCGTTCAGTTGACCGTTA | 59.592 | 47.619 | 0.00 | 0.00 | 0.00 | 3.18 |
24 | 25 | 0.176219 | TGACCGTTCAGTTGACCGTT | 59.824 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
25 | 26 | 0.176219 | TTGACCGTTCAGTTGACCGT | 59.824 | 50.000 | 0.00 | 0.00 | 31.71 | 4.83 |
26 | 27 | 0.580104 | GTTGACCGTTCAGTTGACCG | 59.420 | 55.000 | 0.00 | 0.00 | 31.71 | 4.79 |
27 | 28 | 1.658994 | TGTTGACCGTTCAGTTGACC | 58.341 | 50.000 | 0.00 | 0.00 | 31.71 | 4.02 |
28 | 29 | 2.612212 | ACATGTTGACCGTTCAGTTGAC | 59.388 | 45.455 | 0.00 | 0.00 | 31.71 | 3.18 |
29 | 30 | 2.912771 | ACATGTTGACCGTTCAGTTGA | 58.087 | 42.857 | 0.00 | 0.00 | 31.71 | 3.18 |
30 | 31 | 3.691049 | AACATGTTGACCGTTCAGTTG | 57.309 | 42.857 | 11.07 | 0.00 | 31.71 | 3.16 |
31 | 32 | 5.821516 | TTAAACATGTTGACCGTTCAGTT | 57.178 | 34.783 | 12.82 | 0.00 | 31.71 | 3.16 |
32 | 33 | 5.821516 | TTTAAACATGTTGACCGTTCAGT | 57.178 | 34.783 | 12.82 | 0.00 | 31.71 | 3.41 |
33 | 34 | 5.563751 | CGATTTAAACATGTTGACCGTTCAG | 59.436 | 40.000 | 12.82 | 0.00 | 31.71 | 3.02 |
34 | 35 | 5.007823 | ACGATTTAAACATGTTGACCGTTCA | 59.992 | 36.000 | 12.82 | 0.00 | 0.00 | 3.18 |
35 | 36 | 5.445845 | ACGATTTAAACATGTTGACCGTTC | 58.554 | 37.500 | 12.82 | 4.42 | 0.00 | 3.95 |
36 | 37 | 5.427036 | ACGATTTAAACATGTTGACCGTT | 57.573 | 34.783 | 12.82 | 0.00 | 0.00 | 4.44 |
37 | 38 | 5.427036 | AACGATTTAAACATGTTGACCGT | 57.573 | 34.783 | 12.82 | 13.96 | 0.00 | 4.83 |
38 | 39 | 7.839438 | TTAAACGATTTAAACATGTTGACCG | 57.161 | 32.000 | 12.82 | 13.36 | 32.53 | 4.79 |
52 | 53 | 9.715121 | TCAGGTAATAGACAGTTTAAACGATTT | 57.285 | 29.630 | 12.54 | 3.41 | 0.00 | 2.17 |
53 | 54 | 9.715121 | TTCAGGTAATAGACAGTTTAAACGATT | 57.285 | 29.630 | 12.54 | 10.39 | 0.00 | 3.34 |
54 | 55 | 9.715121 | TTTCAGGTAATAGACAGTTTAAACGAT | 57.285 | 29.630 | 12.54 | 4.98 | 0.00 | 3.73 |
55 | 56 | 8.981647 | GTTTCAGGTAATAGACAGTTTAAACGA | 58.018 | 33.333 | 12.54 | 0.00 | 0.00 | 3.85 |
56 | 57 | 8.985805 | AGTTTCAGGTAATAGACAGTTTAAACG | 58.014 | 33.333 | 12.54 | 10.03 | 0.00 | 3.60 |
58 | 59 | 9.280174 | CCAGTTTCAGGTAATAGACAGTTTAAA | 57.720 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
59 | 60 | 8.434392 | ACCAGTTTCAGGTAATAGACAGTTTAA | 58.566 | 33.333 | 0.00 | 0.00 | 37.67 | 1.52 |
60 | 61 | 7.970102 | ACCAGTTTCAGGTAATAGACAGTTTA | 58.030 | 34.615 | 0.00 | 0.00 | 37.67 | 2.01 |
61 | 62 | 6.838382 | ACCAGTTTCAGGTAATAGACAGTTT | 58.162 | 36.000 | 0.00 | 0.00 | 37.67 | 2.66 |
62 | 63 | 6.435292 | ACCAGTTTCAGGTAATAGACAGTT | 57.565 | 37.500 | 0.00 | 0.00 | 37.67 | 3.16 |
63 | 64 | 6.724905 | ACTACCAGTTTCAGGTAATAGACAGT | 59.275 | 38.462 | 0.00 | 0.00 | 40.87 | 3.55 |
64 | 65 | 7.171630 | ACTACCAGTTTCAGGTAATAGACAG | 57.828 | 40.000 | 0.00 | 0.00 | 40.87 | 3.51 |
65 | 66 | 7.549147 | AACTACCAGTTTCAGGTAATAGACA | 57.451 | 36.000 | 0.00 | 0.00 | 40.87 | 3.41 |
66 | 67 | 8.843885 | AAAACTACCAGTTTCAGGTAATAGAC | 57.156 | 34.615 | 4.86 | 0.00 | 46.78 | 2.59 |
70 | 71 | 9.281371 | GACTAAAAACTACCAGTTTCAGGTAAT | 57.719 | 33.333 | 4.86 | 0.00 | 46.78 | 1.89 |
71 | 72 | 8.266473 | TGACTAAAAACTACCAGTTTCAGGTAA | 58.734 | 33.333 | 4.86 | 0.00 | 46.78 | 2.85 |
72 | 73 | 7.712205 | GTGACTAAAAACTACCAGTTTCAGGTA | 59.288 | 37.037 | 4.86 | 0.00 | 46.78 | 3.08 |
73 | 74 | 6.541278 | GTGACTAAAAACTACCAGTTTCAGGT | 59.459 | 38.462 | 4.86 | 4.59 | 46.78 | 4.00 |
74 | 75 | 6.540914 | TGTGACTAAAAACTACCAGTTTCAGG | 59.459 | 38.462 | 4.86 | 1.93 | 46.78 | 3.86 |
75 | 76 | 7.548196 | TGTGACTAAAAACTACCAGTTTCAG | 57.452 | 36.000 | 4.86 | 7.87 | 46.78 | 3.02 |
76 | 77 | 7.925043 | TTGTGACTAAAAACTACCAGTTTCA | 57.075 | 32.000 | 4.86 | 0.00 | 46.78 | 2.69 |
77 | 78 | 9.797556 | ATTTTGTGACTAAAAACTACCAGTTTC | 57.202 | 29.630 | 4.86 | 0.00 | 46.78 | 2.78 |
110 | 111 | 5.900865 | AAGTGGTCGAAAACTACCAAAAA | 57.099 | 34.783 | 1.93 | 0.00 | 40.06 | 1.94 |
111 | 112 | 5.900865 | AAAGTGGTCGAAAACTACCAAAA | 57.099 | 34.783 | 1.93 | 0.00 | 40.06 | 2.44 |
112 | 113 | 5.900865 | AAAAGTGGTCGAAAACTACCAAA | 57.099 | 34.783 | 1.93 | 0.00 | 40.06 | 3.28 |
113 | 114 | 5.900865 | AAAAAGTGGTCGAAAACTACCAA | 57.099 | 34.783 | 1.93 | 0.00 | 40.06 | 3.67 |
114 | 115 | 6.998968 | TTAAAAAGTGGTCGAAAACTACCA | 57.001 | 33.333 | 1.93 | 0.00 | 40.06 | 3.25 |
115 | 116 | 8.686397 | TTTTTAAAAAGTGGTCGAAAACTACC | 57.314 | 30.769 | 9.31 | 0.00 | 40.06 | 3.18 |
131 | 132 | 7.396623 | TCCCACAGAACTACCACTTTTTAAAAA | 59.603 | 33.333 | 12.62 | 12.62 | 0.00 | 1.94 |
132 | 133 | 6.890814 | TCCCACAGAACTACCACTTTTTAAAA | 59.109 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
133 | 134 | 6.319405 | GTCCCACAGAACTACCACTTTTTAAA | 59.681 | 38.462 | 0.00 | 0.00 | 0.00 | 1.52 |
134 | 135 | 5.824097 | GTCCCACAGAACTACCACTTTTTAA | 59.176 | 40.000 | 0.00 | 0.00 | 0.00 | 1.52 |
135 | 136 | 5.370679 | GTCCCACAGAACTACCACTTTTTA | 58.629 | 41.667 | 0.00 | 0.00 | 0.00 | 1.52 |
136 | 137 | 4.204799 | GTCCCACAGAACTACCACTTTTT | 58.795 | 43.478 | 0.00 | 0.00 | 0.00 | 1.94 |
137 | 138 | 3.743269 | CGTCCCACAGAACTACCACTTTT | 60.743 | 47.826 | 0.00 | 0.00 | 0.00 | 2.27 |
138 | 139 | 2.224209 | CGTCCCACAGAACTACCACTTT | 60.224 | 50.000 | 0.00 | 0.00 | 0.00 | 2.66 |
139 | 140 | 1.343465 | CGTCCCACAGAACTACCACTT | 59.657 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
140 | 141 | 0.966920 | CGTCCCACAGAACTACCACT | 59.033 | 55.000 | 0.00 | 0.00 | 0.00 | 4.00 |
141 | 142 | 0.963962 | TCGTCCCACAGAACTACCAC | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 4.16 |
142 | 143 | 0.963962 | GTCGTCCCACAGAACTACCA | 59.036 | 55.000 | 0.00 | 0.00 | 0.00 | 3.25 |
143 | 144 | 0.109412 | CGTCGTCCCACAGAACTACC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 3.18 |
144 | 145 | 0.877071 | TCGTCGTCCCACAGAACTAC | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 2.73 |
145 | 146 | 0.877071 | GTCGTCGTCCCACAGAACTA | 59.123 | 55.000 | 0.00 | 0.00 | 0.00 | 2.24 |
146 | 147 | 1.658673 | GTCGTCGTCCCACAGAACT | 59.341 | 57.895 | 0.00 | 0.00 | 0.00 | 3.01 |
147 | 148 | 1.372623 | GGTCGTCGTCCCACAGAAC | 60.373 | 63.158 | 0.00 | 0.00 | 0.00 | 3.01 |
148 | 149 | 2.567497 | GGGTCGTCGTCCCACAGAA | 61.567 | 63.158 | 20.91 | 0.00 | 44.05 | 3.02 |
149 | 150 | 2.987547 | GGGTCGTCGTCCCACAGA | 60.988 | 66.667 | 20.91 | 0.00 | 44.05 | 3.41 |
150 | 151 | 4.065281 | GGGGTCGTCGTCCCACAG | 62.065 | 72.222 | 25.75 | 0.00 | 46.26 | 3.66 |
151 | 152 | 2.711883 | TTAGGGGTCGTCGTCCCACA | 62.712 | 60.000 | 25.75 | 12.04 | 46.26 | 4.17 |
152 | 153 | 1.535204 | TTTAGGGGTCGTCGTCCCAC | 61.535 | 60.000 | 25.75 | 16.19 | 46.26 | 4.61 |
153 | 154 | 1.228831 | TTTAGGGGTCGTCGTCCCA | 60.229 | 57.895 | 25.75 | 6.68 | 46.26 | 4.37 |
154 | 155 | 1.253593 | ACTTTAGGGGTCGTCGTCCC | 61.254 | 60.000 | 18.13 | 18.13 | 43.90 | 4.46 |
155 | 156 | 0.108945 | CACTTTAGGGGTCGTCGTCC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.79 |
156 | 157 | 0.108945 | CCACTTTAGGGGTCGTCGTC | 60.109 | 60.000 | 0.00 | 0.00 | 0.00 | 4.20 |
157 | 158 | 0.829182 | ACCACTTTAGGGGTCGTCGT | 60.829 | 55.000 | 0.00 | 0.00 | 29.34 | 4.34 |
158 | 159 | 1.133790 | CTACCACTTTAGGGGTCGTCG | 59.866 | 57.143 | 7.02 | 0.00 | 38.60 | 5.12 |
159 | 160 | 2.174360 | ACTACCACTTTAGGGGTCGTC | 58.826 | 52.381 | 7.02 | 0.00 | 38.60 | 4.20 |
160 | 161 | 2.315720 | ACTACCACTTTAGGGGTCGT | 57.684 | 50.000 | 7.02 | 4.62 | 38.60 | 4.34 |
161 | 162 | 3.690475 | AAACTACCACTTTAGGGGTCG | 57.310 | 47.619 | 7.02 | 3.91 | 38.60 | 4.79 |
180 | 181 | 2.096248 | AGGCCGAGTGTTTGACAAAAA | 58.904 | 42.857 | 1.27 | 0.00 | 0.00 | 1.94 |
181 | 182 | 1.757682 | AGGCCGAGTGTTTGACAAAA | 58.242 | 45.000 | 1.27 | 0.00 | 0.00 | 2.44 |
182 | 183 | 2.489971 | CTAGGCCGAGTGTTTGACAAA | 58.510 | 47.619 | 4.41 | 0.00 | 0.00 | 2.83 |
183 | 184 | 1.270625 | CCTAGGCCGAGTGTTTGACAA | 60.271 | 52.381 | 12.29 | 0.00 | 0.00 | 3.18 |
184 | 185 | 0.320374 | CCTAGGCCGAGTGTTTGACA | 59.680 | 55.000 | 12.29 | 0.00 | 0.00 | 3.58 |
185 | 186 | 0.606604 | TCCTAGGCCGAGTGTTTGAC | 59.393 | 55.000 | 12.29 | 0.00 | 0.00 | 3.18 |
186 | 187 | 0.606604 | GTCCTAGGCCGAGTGTTTGA | 59.393 | 55.000 | 12.29 | 0.00 | 0.00 | 2.69 |
187 | 188 | 0.391263 | GGTCCTAGGCCGAGTGTTTG | 60.391 | 60.000 | 12.29 | 0.00 | 0.00 | 2.93 |
188 | 189 | 1.551019 | GGGTCCTAGGCCGAGTGTTT | 61.551 | 60.000 | 12.29 | 0.00 | 0.00 | 2.83 |
189 | 190 | 1.988406 | GGGTCCTAGGCCGAGTGTT | 60.988 | 63.158 | 12.29 | 0.00 | 0.00 | 3.32 |
190 | 191 | 2.363925 | GGGTCCTAGGCCGAGTGT | 60.364 | 66.667 | 12.29 | 0.00 | 0.00 | 3.55 |
191 | 192 | 3.155167 | GGGGTCCTAGGCCGAGTG | 61.155 | 72.222 | 12.29 | 3.71 | 0.00 | 3.51 |
192 | 193 | 3.357082 | AGGGGTCCTAGGCCGAGT | 61.357 | 66.667 | 12.29 | 0.00 | 28.47 | 4.18 |
193 | 194 | 2.840102 | CAGGGGTCCTAGGCCGAG | 60.840 | 72.222 | 5.78 | 5.78 | 29.64 | 4.63 |
194 | 195 | 4.475444 | CCAGGGGTCCTAGGCCGA | 62.475 | 72.222 | 2.96 | 0.00 | 29.64 | 5.54 |
195 | 196 | 2.884179 | TAACCAGGGGTCCTAGGCCG | 62.884 | 65.000 | 2.96 | 0.00 | 33.12 | 6.13 |
227 | 228 | 6.761731 | TTGTTGCCGAGATTGTTAATTTTG | 57.238 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
247 | 252 | 9.965824 | CACATTCTTCCTTACACTTAAAATTGT | 57.034 | 29.630 | 0.00 | 0.00 | 0.00 | 2.71 |
384 | 389 | 4.153411 | GAGGGCTACTCTGGCTTATCTAA | 58.847 | 47.826 | 2.33 | 0.00 | 43.14 | 2.10 |
391 | 396 | 1.280421 | CTTTTGAGGGCTACTCTGGCT | 59.720 | 52.381 | 9.71 | 0.00 | 46.72 | 4.75 |
411 | 416 | 0.753262 | AGACGATAGCCACCATGACC | 59.247 | 55.000 | 0.00 | 0.00 | 42.67 | 4.02 |
419 | 424 | 7.166691 | ACTTTAGTTTCTAAGACGATAGCCA | 57.833 | 36.000 | 0.00 | 0.00 | 42.67 | 4.75 |
459 | 464 | 3.126831 | CGATGAACTCAGGATAAGGCAC | 58.873 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
460 | 465 | 3.031013 | TCGATGAACTCAGGATAAGGCA | 58.969 | 45.455 | 0.00 | 0.00 | 0.00 | 4.75 |
461 | 466 | 3.319405 | TCTCGATGAACTCAGGATAAGGC | 59.681 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
470 | 475 | 3.320256 | AGCTATGCATCTCGATGAACTCA | 59.680 | 43.478 | 0.19 | 0.00 | 41.20 | 3.41 |
533 | 538 | 3.057456 | ACGTCTAGTCAAGTTGCTAGGTG | 60.057 | 47.826 | 22.87 | 19.16 | 36.32 | 4.00 |
538 | 543 | 4.785511 | ATACACGTCTAGTCAAGTTGCT | 57.214 | 40.909 | 0.00 | 1.61 | 0.00 | 3.91 |
542 | 547 | 5.178809 | GGCAAAAATACACGTCTAGTCAAGT | 59.821 | 40.000 | 0.00 | 0.00 | 0.00 | 3.16 |
547 | 552 | 3.435671 | GCTGGCAAAAATACACGTCTAGT | 59.564 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
553 | 558 | 2.414058 | TGTGCTGGCAAAAATACACG | 57.586 | 45.000 | 0.00 | 0.00 | 0.00 | 4.49 |
582 | 587 | 7.151308 | TGCCCAATTCTTATTTGTGTTGTTAG | 58.849 | 34.615 | 0.00 | 0.00 | 0.00 | 2.34 |
591 | 596 | 3.129287 | AGCGTCTGCCCAATTCTTATTTG | 59.871 | 43.478 | 0.00 | 0.00 | 44.31 | 2.32 |
597 | 602 | 0.392193 | CAGAGCGTCTGCCCAATTCT | 60.392 | 55.000 | 2.75 | 0.00 | 44.31 | 2.40 |
668 | 673 | 7.757526 | TGCGCACTTTTAGTATTTACATCAAT | 58.242 | 30.769 | 5.66 | 0.00 | 0.00 | 2.57 |
751 | 756 | 7.352079 | TCAGCACTTCTCATATATCAAGTCA | 57.648 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
765 | 770 | 4.521130 | TTCGTATGAGTTCAGCACTTCT | 57.479 | 40.909 | 0.00 | 0.00 | 35.01 | 2.85 |
826 | 832 | 2.440409 | AGGTTAGCATTGCTTGACTGG | 58.560 | 47.619 | 17.71 | 0.00 | 40.44 | 4.00 |
906 | 945 | 8.919777 | ACCTGAAAAGTAACTAGCAAGTTAAT | 57.080 | 30.769 | 0.00 | 0.00 | 46.99 | 1.40 |
977 | 1016 | 1.009675 | CGGCATGCAGGAATTACGC | 60.010 | 57.895 | 21.36 | 0.00 | 0.00 | 4.42 |
1025 | 1064 | 1.151668 | CAGTTCCTCCACTTTCTGCG | 58.848 | 55.000 | 0.00 | 0.00 | 0.00 | 5.18 |
1030 | 1069 | 4.437682 | TGACATTCAGTTCCTCCACTTT | 57.562 | 40.909 | 0.00 | 0.00 | 0.00 | 2.66 |
1114 | 1153 | 2.740055 | CAGTGAGCCGGCAGTGTC | 60.740 | 66.667 | 31.54 | 18.22 | 35.10 | 3.67 |
1121 | 1160 | 0.593128 | CAAGTTTTCCAGTGAGCCGG | 59.407 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1169 | 1208 | 5.538433 | CCATCTGGGGAACTTTCAGTAAAAA | 59.462 | 40.000 | 0.00 | 0.00 | 0.00 | 1.94 |
1344 | 1383 | 3.462483 | TCCTCTACTTTGTTTGCACGA | 57.538 | 42.857 | 0.00 | 0.00 | 0.00 | 4.35 |
1375 | 1414 | 0.693049 | TCCTTCCCTTCAAGCTGGTC | 59.307 | 55.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1449 | 1488 | 0.734942 | TGAAACGTTCGGCGATCTCC | 60.735 | 55.000 | 11.76 | 0.00 | 44.77 | 3.71 |
1826 | 1865 | 0.319211 | TTGCTGTGCTTGCAATGCTC | 60.319 | 50.000 | 17.72 | 15.21 | 44.24 | 4.26 |
1890 | 1929 | 2.002586 | GCACTCTCTTTGCGAGCAATA | 58.997 | 47.619 | 11.53 | 2.64 | 39.70 | 1.90 |
1948 | 1987 | 3.280211 | TGCTAAGGCAGTCGCGTA | 58.720 | 55.556 | 5.77 | 0.00 | 44.28 | 4.42 |
2014 | 2053 | 7.195374 | TCTCCCTATGTGTAATTAAAGCTGT | 57.805 | 36.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2043 | 2082 | 5.129980 | AGTGGATTCATGTGCTCTAATCTCA | 59.870 | 40.000 | 0.00 | 0.00 | 0.00 | 3.27 |
2274 | 2313 | 5.300752 | TCAAGATCTTTATTGGCCGAGATC | 58.699 | 41.667 | 4.86 | 17.89 | 42.96 | 2.75 |
2341 | 2380 | 7.275920 | CCTTCCATATAAGCAGTAAAGTCACT | 58.724 | 38.462 | 0.00 | 0.00 | 0.00 | 3.41 |
2388 | 2427 | 1.433534 | GCACTTTCTCTCCAACCTCG | 58.566 | 55.000 | 0.00 | 0.00 | 0.00 | 4.63 |
2401 | 2440 | 3.009723 | CACTAACCATGGATCGCACTTT | 58.990 | 45.455 | 21.47 | 1.50 | 0.00 | 2.66 |
2439 | 2478 | 3.481453 | GTCAAGCTCTTTCCTGGTCTTT | 58.519 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
2460 | 2499 | 5.554510 | CGTTTCGATGTTTGTCCTCATATCG | 60.555 | 44.000 | 0.00 | 0.00 | 38.86 | 2.92 |
2486 | 2525 | 1.272147 | GCCCTTTCACCTCATCCTTGT | 60.272 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
2635 | 2674 | 0.880278 | ACAACGCTGAGTTCACGCAT | 60.880 | 50.000 | 0.00 | 0.00 | 42.02 | 4.73 |
2636 | 2675 | 0.249114 | TACAACGCTGAGTTCACGCA | 60.249 | 50.000 | 0.00 | 0.00 | 42.02 | 5.24 |
2643 | 2682 | 1.542030 | CTCTCCTGTACAACGCTGAGT | 59.458 | 52.381 | 0.00 | 0.00 | 0.00 | 3.41 |
2652 | 2691 | 2.229062 | CGCTTCTGTTCTCTCCTGTACA | 59.771 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2659 | 2698 | 2.656560 | TTAGCCGCTTCTGTTCTCTC | 57.343 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2698 | 2737 | 4.781934 | AGTTGTGTTTCTTGAGTAGCCTT | 58.218 | 39.130 | 0.00 | 0.00 | 0.00 | 4.35 |
2720 | 2759 | 1.447838 | CGAGCCTTCGCCTTTGCTA | 60.448 | 57.895 | 0.00 | 0.00 | 40.36 | 3.49 |
2741 | 2780 | 1.220749 | GTAACCTCATCGCAGGCCA | 59.779 | 57.895 | 5.01 | 0.00 | 36.98 | 5.36 |
2762 | 2801 | 0.176910 | GTCTGCCTCTTCACTAGCCC | 59.823 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
2769 | 2808 | 0.323451 | TAGCTCGGTCTGCCTCTTCA | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2868 | 2907 | 0.248012 | CATTTGCTGAGGCCATTGCA | 59.752 | 50.000 | 5.01 | 9.18 | 40.13 | 4.08 |
2932 | 2971 | 1.270358 | GCTCTTGTCACTTCCTCGGTT | 60.270 | 52.381 | 0.00 | 0.00 | 0.00 | 4.44 |
2938 | 2977 | 2.681848 | CCATCATGCTCTTGTCACTTCC | 59.318 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
3009 | 3048 | 1.511305 | CCGCTTCTTAGCTCGGTCA | 59.489 | 57.895 | 0.00 | 0.00 | 45.51 | 4.02 |
3141 | 3180 | 1.001624 | TGATGACTTTCTCATGCGCG | 58.998 | 50.000 | 0.00 | 0.00 | 39.96 | 6.86 |
3154 | 3193 | 2.613595 | TGTTGTCTTGTGCTGTGATGAC | 59.386 | 45.455 | 0.00 | 0.00 | 0.00 | 3.06 |
3155 | 3194 | 2.916640 | TGTTGTCTTGTGCTGTGATGA | 58.083 | 42.857 | 0.00 | 0.00 | 0.00 | 2.92 |
3171 | 3210 | 4.035091 | TCGTTCTCCATTGTCAACTTGTTG | 59.965 | 41.667 | 7.13 | 7.13 | 0.00 | 3.33 |
3180 | 3219 | 2.266554 | CTCAGCTCGTTCTCCATTGTC | 58.733 | 52.381 | 0.00 | 0.00 | 0.00 | 3.18 |
3213 | 3252 | 2.609350 | GTGTAATGTTGGCCATGCTTG | 58.391 | 47.619 | 6.09 | 0.00 | 32.82 | 4.01 |
3252 | 3291 | 2.885644 | CAGACACCGGGAATCGCG | 60.886 | 66.667 | 12.91 | 12.91 | 39.48 | 5.87 |
3261 | 3300 | 1.081892 | CATTCAGAAGGCAGACACCG | 58.918 | 55.000 | 0.00 | 0.00 | 33.69 | 4.94 |
3263 | 3302 | 4.569966 | CACTATCATTCAGAAGGCAGACAC | 59.430 | 45.833 | 3.98 | 0.00 | 0.00 | 3.67 |
3281 | 3320 | 3.697542 | TGCATCAAAAGAGCATGCACTAT | 59.302 | 39.130 | 21.98 | 8.94 | 46.22 | 2.12 |
3282 | 3321 | 3.083293 | TGCATCAAAAGAGCATGCACTA | 58.917 | 40.909 | 21.98 | 3.95 | 46.22 | 2.74 |
3315 | 3354 | 1.003476 | TCCTTGCGCATGAGAAGCA | 60.003 | 52.632 | 23.56 | 0.84 | 39.33 | 3.91 |
3325 | 3364 | 3.453070 | CTAGGCCTCCTCCTTGCGC | 62.453 | 68.421 | 9.68 | 0.00 | 37.66 | 6.09 |
3357 | 3396 | 2.097160 | GCTGCAGTTGTCGCGATG | 59.903 | 61.111 | 14.06 | 7.72 | 0.00 | 3.84 |
3399 | 3438 | 1.270041 | GCTATGGAGCGAGGGAAGAAG | 60.270 | 57.143 | 0.00 | 0.00 | 39.39 | 2.85 |
3422 | 3461 | 7.550551 | GTGTCTTCTTCCTATTCATGAACATCA | 59.449 | 37.037 | 11.07 | 0.00 | 0.00 | 3.07 |
3476 | 3515 | 6.214412 | ACAGAGGGATCATACCATAGGAAATC | 59.786 | 42.308 | 0.00 | 0.00 | 0.00 | 2.17 |
3485 | 3524 | 4.556697 | ACATGTACAGAGGGATCATACCA | 58.443 | 43.478 | 0.00 | 0.00 | 0.00 | 3.25 |
3494 | 3533 | 5.598830 | ACCTACTTGATACATGTACAGAGGG | 59.401 | 44.000 | 7.96 | 12.90 | 0.00 | 4.30 |
3533 | 3576 | 4.860352 | TGAACGATAAGTACAATCGGTGTG | 59.140 | 41.667 | 25.19 | 6.91 | 46.24 | 3.82 |
3570 | 3617 | 1.000955 | ACAAGCTCAGACCGACGAAAT | 59.999 | 47.619 | 0.00 | 0.00 | 0.00 | 2.17 |
3592 | 3639 | 4.218312 | AGAGAAAAGATTGCAAGGTTGGT | 58.782 | 39.130 | 4.94 | 0.00 | 0.00 | 3.67 |
3644 | 3694 | 4.081198 | CAGGTTCAGAGGTATGCTTCTTCT | 60.081 | 45.833 | 0.00 | 0.00 | 0.00 | 2.85 |
3645 | 3695 | 4.187694 | CAGGTTCAGAGGTATGCTTCTTC | 58.812 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
3646 | 3696 | 3.584848 | ACAGGTTCAGAGGTATGCTTCTT | 59.415 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
3655 | 3705 | 2.918712 | CTGTCAACAGGTTCAGAGGT | 57.081 | 50.000 | 2.08 | 0.00 | 40.20 | 3.85 |
3669 | 3719 | 5.811399 | ATGACGAAAAGAAAACACTGTCA | 57.189 | 34.783 | 0.00 | 0.00 | 39.18 | 3.58 |
3714 | 3764 | 4.694037 | CAGAGACAGAAATGCTCATGTGAA | 59.306 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
3736 | 3786 | 1.661463 | AGAGCCTCTGGAAACCATCA | 58.339 | 50.000 | 0.00 | 0.00 | 30.82 | 3.07 |
3737 | 3787 | 2.769095 | AGTAGAGCCTCTGGAAACCATC | 59.231 | 50.000 | 3.98 | 0.00 | 30.82 | 3.51 |
3738 | 3788 | 2.503356 | CAGTAGAGCCTCTGGAAACCAT | 59.497 | 50.000 | 3.98 | 0.00 | 30.82 | 3.55 |
3739 | 3789 | 1.902508 | CAGTAGAGCCTCTGGAAACCA | 59.097 | 52.381 | 3.98 | 0.00 | 0.00 | 3.67 |
3740 | 3790 | 1.406205 | GCAGTAGAGCCTCTGGAAACC | 60.406 | 57.143 | 3.98 | 0.00 | 32.94 | 3.27 |
3741 | 3791 | 1.552792 | AGCAGTAGAGCCTCTGGAAAC | 59.447 | 52.381 | 3.98 | 0.00 | 34.23 | 2.78 |
3742 | 3792 | 1.827969 | GAGCAGTAGAGCCTCTGGAAA | 59.172 | 52.381 | 3.98 | 0.00 | 34.23 | 3.13 |
3743 | 3793 | 1.479709 | GAGCAGTAGAGCCTCTGGAA | 58.520 | 55.000 | 3.98 | 0.00 | 34.23 | 3.53 |
3744 | 3794 | 0.396417 | GGAGCAGTAGAGCCTCTGGA | 60.396 | 60.000 | 3.98 | 0.00 | 34.23 | 3.86 |
3745 | 3795 | 1.398958 | GGGAGCAGTAGAGCCTCTGG | 61.399 | 65.000 | 3.98 | 0.00 | 34.23 | 3.86 |
3746 | 3796 | 0.685785 | TGGGAGCAGTAGAGCCTCTG | 60.686 | 60.000 | 3.98 | 0.00 | 34.23 | 3.35 |
3747 | 3797 | 0.396974 | CTGGGAGCAGTAGAGCCTCT | 60.397 | 60.000 | 0.00 | 0.00 | 34.23 | 3.69 |
3748 | 3798 | 0.396417 | TCTGGGAGCAGTAGAGCCTC | 60.396 | 60.000 | 0.00 | 0.00 | 34.23 | 4.70 |
3825 | 3918 | 9.165035 | CCAACACATTTCATTTTATTATGGCTT | 57.835 | 29.630 | 0.00 | 0.00 | 0.00 | 4.35 |
3826 | 3919 | 7.769970 | CCCAACACATTTCATTTTATTATGGCT | 59.230 | 33.333 | 0.00 | 0.00 | 0.00 | 4.75 |
3827 | 3920 | 7.552330 | ACCCAACACATTTCATTTTATTATGGC | 59.448 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
3828 | 3921 | 9.097257 | GACCCAACACATTTCATTTTATTATGG | 57.903 | 33.333 | 0.00 | 0.00 | 0.00 | 2.74 |
3881 | 3985 | 7.996385 | AGTGTAGTTGTTTTGCTAAATGTTCT | 58.004 | 30.769 | 0.00 | 0.00 | 0.00 | 3.01 |
3882 | 3986 | 9.893305 | ATAGTGTAGTTGTTTTGCTAAATGTTC | 57.107 | 29.630 | 0.00 | 0.00 | 0.00 | 3.18 |
3945 | 4065 | 0.807496 | GGGCTGCAGAGTGATTCAAC | 59.193 | 55.000 | 20.43 | 0.00 | 0.00 | 3.18 |
3961 | 4081 | 3.961480 | AATTTACAAGCAGGAAAGGGC | 57.039 | 42.857 | 0.00 | 0.00 | 0.00 | 5.19 |
4367 | 4505 | 1.133253 | GTACTACGAGCACGCGACA | 59.867 | 57.895 | 15.93 | 0.00 | 43.96 | 4.35 |
4386 | 4524 | 1.216710 | CCGAGAAGCTCAGGTCCAC | 59.783 | 63.158 | 0.00 | 0.00 | 0.00 | 4.02 |
4392 | 4530 | 0.248296 | GAGTACGCCGAGAAGCTCAG | 60.248 | 60.000 | 0.00 | 0.00 | 0.00 | 3.35 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.