Multiple sequence alignment - TraesCS5A01G238200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G238200 chr5A 100.000 2279 0 0 1 2279 454706640 454704362 0.000000e+00 4209
1 TraesCS5A01G238200 chr5A 97.812 320 7 0 1 320 674286458 674286139 9.200000e-154 553
2 TraesCS5A01G238200 chr5D 91.985 1909 76 35 417 2271 353656781 353654896 0.000000e+00 2606
3 TraesCS5A01G238200 chr5D 93.950 281 13 2 414 690 353664453 353664173 2.710000e-114 422
4 TraesCS5A01G238200 chr5B 91.482 1808 89 32 414 2179 417806569 417804785 0.000000e+00 2425
5 TraesCS5A01G238200 chr5B 91.781 73 2 2 2203 2271 417804783 417804711 5.180000e-17 99
6 TraesCS5A01G238200 chr4B 77.750 1182 233 26 591 1761 568737241 568736079 0.000000e+00 699
7 TraesCS5A01G238200 chr4B 97.812 320 7 0 1 320 182996247 182995928 9.200000e-154 553
8 TraesCS5A01G238200 chr4B 86.364 132 18 0 1866 1997 568736068 568735937 6.560000e-31 145
9 TraesCS5A01G238200 chr6B 80.708 819 146 8 953 1762 614312865 614312050 5.340000e-176 627
10 TraesCS5A01G238200 chr6B 80.049 822 146 13 953 1762 636584770 636585585 5.420000e-166 593
11 TraesCS5A01G238200 chr6B 79.512 820 154 10 953 1762 636492751 636491936 2.540000e-159 571
12 TraesCS5A01G238200 chr6B 93.421 76 5 0 324 399 20383290 20383215 1.850000e-21 113
13 TraesCS5A01G238200 chr6A 80.366 820 147 10 953 1762 554825739 554824924 5.380000e-171 610
14 TraesCS5A01G238200 chr6A 80.122 820 149 10 953 1762 564975966 564975151 1.170000e-167 599
15 TraesCS5A01G238200 chr6D 79.609 819 155 8 953 1762 422191857 422191042 5.460000e-161 577
16 TraesCS5A01G238200 chrUn 97.812 320 7 0 1 320 1495824 1495505 9.200000e-154 553
17 TraesCS5A01G238200 chrUn 94.805 77 4 0 321 397 111184993 111185069 1.110000e-23 121
18 TraesCS5A01G238200 chrUn 85.185 108 14 2 324 431 396395188 396395293 2.390000e-20 110
19 TraesCS5A01G238200 chr7A 96.657 329 10 1 1 329 564580702 564581029 1.540000e-151 545
20 TraesCS5A01G238200 chr3B 96.386 332 10 2 1 332 534864149 534863820 1.540000e-151 545
21 TraesCS5A01G238200 chr3B 96.108 334 11 2 1 334 671640238 671639907 5.540000e-151 544
22 TraesCS5A01G238200 chr3A 96.386 332 9 3 1 331 359409070 359408741 5.540000e-151 544
23 TraesCS5A01G238200 chr3A 85.185 108 14 2 324 431 738426709 738426814 2.390000e-20 110
24 TraesCS5A01G238200 chr3A 85.185 108 14 2 324 431 738427196 738427301 2.390000e-20 110
25 TraesCS5A01G238200 chr3A 85.185 108 14 2 324 431 738516544 738516649 2.390000e-20 110
26 TraesCS5A01G238200 chr3A 85.185 108 14 2 324 431 738613262 738613367 2.390000e-20 110
27 TraesCS5A01G238200 chr2B 96.375 331 11 1 1 331 54684025 54683696 5.540000e-151 544
28 TraesCS5A01G238200 chr1B 95.101 347 13 3 1 344 339307696 339307351 5.540000e-151 544
29 TraesCS5A01G238200 chr3D 97.183 71 2 0 328 398 373596783 373596713 1.110000e-23 121
30 TraesCS5A01G238200 chr2D 94.737 76 4 0 321 396 196888605 196888680 3.980000e-23 119


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G238200 chr5A 454704362 454706640 2278 True 4209 4209 100.0000 1 2279 1 chr5A.!!$R1 2278
1 TraesCS5A01G238200 chr5D 353654896 353656781 1885 True 2606 2606 91.9850 417 2271 1 chr5D.!!$R1 1854
2 TraesCS5A01G238200 chr5B 417804711 417806569 1858 True 1262 2425 91.6315 414 2271 2 chr5B.!!$R1 1857
3 TraesCS5A01G238200 chr4B 568735937 568737241 1304 True 422 699 82.0570 591 1997 2 chr4B.!!$R2 1406
4 TraesCS5A01G238200 chr6B 614312050 614312865 815 True 627 627 80.7080 953 1762 1 chr6B.!!$R2 809
5 TraesCS5A01G238200 chr6B 636584770 636585585 815 False 593 593 80.0490 953 1762 1 chr6B.!!$F1 809
6 TraesCS5A01G238200 chr6B 636491936 636492751 815 True 571 571 79.5120 953 1762 1 chr6B.!!$R3 809
7 TraesCS5A01G238200 chr6A 554824924 554825739 815 True 610 610 80.3660 953 1762 1 chr6A.!!$R1 809
8 TraesCS5A01G238200 chr6A 564975151 564975966 815 True 599 599 80.1220 953 1762 1 chr6A.!!$R2 809
9 TraesCS5A01G238200 chr6D 422191042 422191857 815 True 577 577 79.6090 953 1762 1 chr6D.!!$R1 809

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
357 358 0.03759 CCCCAAAATCGACTGACCCA 59.962 55.0 0.0 0.0 0.0 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2201 2285 0.031043 TGTTAGCGCTACACACACGT 59.969 50.0 18.63 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.595311 CTTTGTTTTTGCCACTCTAGTTTTT 57.405 32.000 0.00 0.00 0.00 1.94
25 26 6.959671 TTGTTTTTGCCACTCTAGTTTTTG 57.040 33.333 0.00 0.00 0.00 2.44
26 27 4.867608 TGTTTTTGCCACTCTAGTTTTTGC 59.132 37.500 0.00 0.00 0.00 3.68
27 28 3.726291 TTTGCCACTCTAGTTTTTGCC 57.274 42.857 0.00 0.00 0.00 4.52
28 29 2.356665 TGCCACTCTAGTTTTTGCCA 57.643 45.000 0.00 0.00 0.00 4.92
29 30 2.660572 TGCCACTCTAGTTTTTGCCAA 58.339 42.857 0.00 0.00 0.00 4.52
30 31 2.360801 TGCCACTCTAGTTTTTGCCAAC 59.639 45.455 0.00 0.00 0.00 3.77
31 32 2.623416 GCCACTCTAGTTTTTGCCAACT 59.377 45.455 0.00 0.00 40.28 3.16
32 33 3.068165 GCCACTCTAGTTTTTGCCAACTT 59.932 43.478 0.00 0.00 38.07 2.66
33 34 4.441495 GCCACTCTAGTTTTTGCCAACTTT 60.441 41.667 0.00 0.00 38.07 2.66
34 35 5.043248 CCACTCTAGTTTTTGCCAACTTTG 58.957 41.667 0.00 0.00 38.07 2.77
35 36 5.163561 CCACTCTAGTTTTTGCCAACTTTGA 60.164 40.000 0.00 0.00 38.07 2.69
36 37 6.461509 CCACTCTAGTTTTTGCCAACTTTGAT 60.462 38.462 0.00 0.00 38.07 2.57
37 38 6.980397 CACTCTAGTTTTTGCCAACTTTGATT 59.020 34.615 0.00 0.00 38.07 2.57
38 39 8.134895 CACTCTAGTTTTTGCCAACTTTGATTA 58.865 33.333 0.00 0.00 38.07 1.75
39 40 8.860088 ACTCTAGTTTTTGCCAACTTTGATTAT 58.140 29.630 0.00 0.00 38.07 1.28
40 41 9.132521 CTCTAGTTTTTGCCAACTTTGATTATG 57.867 33.333 0.00 0.00 38.07 1.90
41 42 6.544038 AGTTTTTGCCAACTTTGATTATGC 57.456 33.333 0.00 0.00 32.81 3.14
42 43 5.469760 AGTTTTTGCCAACTTTGATTATGCC 59.530 36.000 0.00 0.00 32.81 4.40
43 44 4.613925 TTTGCCAACTTTGATTATGCCA 57.386 36.364 0.00 0.00 0.00 4.92
44 45 3.591196 TGCCAACTTTGATTATGCCAC 57.409 42.857 0.00 0.00 0.00 5.01
45 46 3.164268 TGCCAACTTTGATTATGCCACT 58.836 40.909 0.00 0.00 0.00 4.00
46 47 3.193267 TGCCAACTTTGATTATGCCACTC 59.807 43.478 0.00 0.00 0.00 3.51
47 48 3.445096 GCCAACTTTGATTATGCCACTCT 59.555 43.478 0.00 0.00 0.00 3.24
48 49 4.640201 GCCAACTTTGATTATGCCACTCTA 59.360 41.667 0.00 0.00 0.00 2.43
49 50 5.220931 GCCAACTTTGATTATGCCACTCTAG 60.221 44.000 0.00 0.00 0.00 2.43
50 51 6.115446 CCAACTTTGATTATGCCACTCTAGA 58.885 40.000 0.00 0.00 0.00 2.43
51 52 6.599244 CCAACTTTGATTATGCCACTCTAGAA 59.401 38.462 0.00 0.00 0.00 2.10
52 53 7.284034 CCAACTTTGATTATGCCACTCTAGAAT 59.716 37.037 0.00 0.00 0.00 2.40
53 54 8.680903 CAACTTTGATTATGCCACTCTAGAATT 58.319 33.333 0.00 0.00 0.00 2.17
54 55 8.814038 ACTTTGATTATGCCACTCTAGAATTT 57.186 30.769 0.00 0.00 0.00 1.82
55 56 8.680903 ACTTTGATTATGCCACTCTAGAATTTG 58.319 33.333 0.00 0.00 0.00 2.32
56 57 8.806429 TTTGATTATGCCACTCTAGAATTTGA 57.194 30.769 0.00 0.00 0.00 2.69
57 58 7.792374 TGATTATGCCACTCTAGAATTTGAC 57.208 36.000 0.00 0.00 0.00 3.18
58 59 7.337938 TGATTATGCCACTCTAGAATTTGACA 58.662 34.615 0.00 0.00 0.00 3.58
59 60 7.994911 TGATTATGCCACTCTAGAATTTGACAT 59.005 33.333 0.00 0.00 0.00 3.06
60 61 7.792374 TTATGCCACTCTAGAATTTGACATC 57.208 36.000 0.00 0.00 0.00 3.06
61 62 5.426689 TGCCACTCTAGAATTTGACATCT 57.573 39.130 0.00 0.00 0.00 2.90
62 63 5.423015 TGCCACTCTAGAATTTGACATCTC 58.577 41.667 0.00 0.00 0.00 2.75
63 64 5.046376 TGCCACTCTAGAATTTGACATCTCA 60.046 40.000 0.00 0.00 0.00 3.27
64 65 5.293079 GCCACTCTAGAATTTGACATCTCAC 59.707 44.000 0.00 0.00 0.00 3.51
65 66 6.638610 CCACTCTAGAATTTGACATCTCACT 58.361 40.000 0.00 0.00 0.00 3.41
66 67 7.102346 CCACTCTAGAATTTGACATCTCACTT 58.898 38.462 0.00 0.00 0.00 3.16
67 68 7.605691 CCACTCTAGAATTTGACATCTCACTTT 59.394 37.037 0.00 0.00 0.00 2.66
68 69 8.997323 CACTCTAGAATTTGACATCTCACTTTT 58.003 33.333 0.00 0.00 0.00 2.27
69 70 8.997323 ACTCTAGAATTTGACATCTCACTTTTG 58.003 33.333 0.00 0.00 0.00 2.44
70 71 7.810658 TCTAGAATTTGACATCTCACTTTTGC 58.189 34.615 0.00 0.00 0.00 3.68
71 72 5.776744 AGAATTTGACATCTCACTTTTGCC 58.223 37.500 0.00 0.00 0.00 4.52
72 73 5.302568 AGAATTTGACATCTCACTTTTGCCA 59.697 36.000 0.00 0.00 0.00 4.92
73 74 3.988379 TTGACATCTCACTTTTGCCAC 57.012 42.857 0.00 0.00 0.00 5.01
74 75 3.213206 TGACATCTCACTTTTGCCACT 57.787 42.857 0.00 0.00 0.00 4.00
75 76 3.141398 TGACATCTCACTTTTGCCACTC 58.859 45.455 0.00 0.00 0.00 3.51
76 77 3.181451 TGACATCTCACTTTTGCCACTCT 60.181 43.478 0.00 0.00 0.00 3.24
77 78 3.817647 GACATCTCACTTTTGCCACTCTT 59.182 43.478 0.00 0.00 0.00 2.85
78 79 4.973168 ACATCTCACTTTTGCCACTCTTA 58.027 39.130 0.00 0.00 0.00 2.10
79 80 4.999950 ACATCTCACTTTTGCCACTCTTAG 59.000 41.667 0.00 0.00 0.00 2.18
80 81 3.403038 TCTCACTTTTGCCACTCTTAGC 58.597 45.455 0.00 0.00 0.00 3.09
81 82 3.071602 TCTCACTTTTGCCACTCTTAGCT 59.928 43.478 0.00 0.00 0.00 3.32
82 83 3.817647 CTCACTTTTGCCACTCTTAGCTT 59.182 43.478 0.00 0.00 0.00 3.74
83 84 4.207165 TCACTTTTGCCACTCTTAGCTTT 58.793 39.130 0.00 0.00 0.00 3.51
84 85 4.644685 TCACTTTTGCCACTCTTAGCTTTT 59.355 37.500 0.00 0.00 0.00 2.27
85 86 4.741676 CACTTTTGCCACTCTTAGCTTTTG 59.258 41.667 0.00 0.00 0.00 2.44
86 87 4.644685 ACTTTTGCCACTCTTAGCTTTTGA 59.355 37.500 0.00 0.00 0.00 2.69
87 88 4.568152 TTTGCCACTCTTAGCTTTTGAC 57.432 40.909 0.00 0.00 0.00 3.18
88 89 3.207265 TGCCACTCTTAGCTTTTGACA 57.793 42.857 0.00 0.00 0.00 3.58
89 90 3.550820 TGCCACTCTTAGCTTTTGACAA 58.449 40.909 0.00 0.00 0.00 3.18
90 91 4.144297 TGCCACTCTTAGCTTTTGACAAT 58.856 39.130 0.00 0.00 0.00 2.71
91 92 5.312895 TGCCACTCTTAGCTTTTGACAATA 58.687 37.500 0.00 0.00 0.00 1.90
92 93 5.181245 TGCCACTCTTAGCTTTTGACAATAC 59.819 40.000 0.00 0.00 0.00 1.89
93 94 5.181245 GCCACTCTTAGCTTTTGACAATACA 59.819 40.000 0.00 0.00 0.00 2.29
94 95 6.127897 GCCACTCTTAGCTTTTGACAATACAT 60.128 38.462 0.00 0.00 0.00 2.29
95 96 7.467623 CCACTCTTAGCTTTTGACAATACATC 58.532 38.462 0.00 0.00 0.00 3.06
96 97 7.119699 CCACTCTTAGCTTTTGACAATACATCA 59.880 37.037 0.00 0.00 0.00 3.07
97 98 7.959651 CACTCTTAGCTTTTGACAATACATCAC 59.040 37.037 0.00 0.00 0.00 3.06
98 99 7.661437 ACTCTTAGCTTTTGACAATACATCACA 59.339 33.333 0.00 0.00 0.00 3.58
99 100 8.389779 TCTTAGCTTTTGACAATACATCACAA 57.610 30.769 0.00 0.00 0.00 3.33
100 101 8.845227 TCTTAGCTTTTGACAATACATCACAAA 58.155 29.630 0.00 0.00 0.00 2.83
101 102 9.630098 CTTAGCTTTTGACAATACATCACAAAT 57.370 29.630 0.00 0.00 32.05 2.32
102 103 7.878477 AGCTTTTGACAATACATCACAAATG 57.122 32.000 0.00 0.00 32.05 2.32
103 104 6.366877 AGCTTTTGACAATACATCACAAATGC 59.633 34.615 3.24 3.24 44.26 3.56
104 105 6.401367 GCTTTTGACAATACATCACAAATGCC 60.401 38.462 1.25 0.00 41.34 4.40
105 106 5.718724 TTGACAATACATCACAAATGCCA 57.281 34.783 0.00 0.00 0.00 4.92
106 107 5.918426 TGACAATACATCACAAATGCCAT 57.082 34.783 0.00 0.00 0.00 4.40
107 108 6.283544 TGACAATACATCACAAATGCCATT 57.716 33.333 0.00 0.00 0.00 3.16
108 109 6.331845 TGACAATACATCACAAATGCCATTC 58.668 36.000 0.00 0.00 0.00 2.67
109 110 5.663456 ACAATACATCACAAATGCCATTCC 58.337 37.500 0.00 0.00 0.00 3.01
110 111 2.945447 ACATCACAAATGCCATTCCG 57.055 45.000 0.00 0.00 0.00 4.30
111 112 2.170166 ACATCACAAATGCCATTCCGT 58.830 42.857 0.00 0.00 0.00 4.69
112 113 2.094597 ACATCACAAATGCCATTCCGTG 60.095 45.455 11.71 11.71 0.00 4.94
121 122 2.807878 CCATTCCGTGGCAAAAACG 58.192 52.632 0.00 0.00 42.12 3.60
122 123 0.312416 CCATTCCGTGGCAAAAACGA 59.688 50.000 0.00 0.00 43.68 3.85
123 124 1.067915 CCATTCCGTGGCAAAAACGAT 60.068 47.619 0.00 0.00 43.68 3.73
124 125 2.162608 CCATTCCGTGGCAAAAACGATA 59.837 45.455 0.00 0.00 43.68 2.92
125 126 3.366476 CCATTCCGTGGCAAAAACGATAA 60.366 43.478 0.00 0.00 43.68 1.75
126 127 4.420168 CATTCCGTGGCAAAAACGATAAT 58.580 39.130 0.00 0.00 43.68 1.28
127 128 4.506886 TTCCGTGGCAAAAACGATAATT 57.493 36.364 0.00 0.00 43.68 1.40
128 129 4.506886 TCCGTGGCAAAAACGATAATTT 57.493 36.364 0.00 0.00 43.68 1.82
129 130 4.872664 TCCGTGGCAAAAACGATAATTTT 58.127 34.783 0.00 0.00 43.68 1.82
130 131 5.290386 TCCGTGGCAAAAACGATAATTTTT 58.710 33.333 0.00 0.00 43.68 1.94
153 154 9.528018 TTTTTATTTCACTTTTGCCACTCTTAG 57.472 29.630 0.00 0.00 0.00 2.18
154 155 4.568152 TTTCACTTTTGCCACTCTTAGC 57.432 40.909 0.00 0.00 0.00 3.09
155 156 3.492102 TCACTTTTGCCACTCTTAGCT 57.508 42.857 0.00 0.00 0.00 3.32
156 157 3.820557 TCACTTTTGCCACTCTTAGCTT 58.179 40.909 0.00 0.00 0.00 3.74
157 158 4.207165 TCACTTTTGCCACTCTTAGCTTT 58.793 39.130 0.00 0.00 0.00 3.51
158 159 4.644685 TCACTTTTGCCACTCTTAGCTTTT 59.355 37.500 0.00 0.00 0.00 2.27
159 160 4.741676 CACTTTTGCCACTCTTAGCTTTTG 59.258 41.667 0.00 0.00 0.00 2.44
160 161 4.644685 ACTTTTGCCACTCTTAGCTTTTGA 59.355 37.500 0.00 0.00 0.00 2.69
161 162 4.568152 TTTGCCACTCTTAGCTTTTGAC 57.432 40.909 0.00 0.00 0.00 3.18
162 163 3.207265 TGCCACTCTTAGCTTTTGACA 57.793 42.857 0.00 0.00 0.00 3.58
163 164 3.754965 TGCCACTCTTAGCTTTTGACAT 58.245 40.909 0.00 0.00 0.00 3.06
164 165 3.503363 TGCCACTCTTAGCTTTTGACATG 59.497 43.478 0.00 0.00 0.00 3.21
165 166 3.503748 GCCACTCTTAGCTTTTGACATGT 59.496 43.478 0.00 0.00 0.00 3.21
166 167 4.695455 GCCACTCTTAGCTTTTGACATGTA 59.305 41.667 0.00 0.00 0.00 2.29
167 168 5.355350 GCCACTCTTAGCTTTTGACATGTAT 59.645 40.000 0.00 0.00 0.00 2.29
168 169 6.457528 GCCACTCTTAGCTTTTGACATGTATC 60.458 42.308 0.00 0.00 0.00 2.24
169 170 6.595326 CCACTCTTAGCTTTTGACATGTATCA 59.405 38.462 0.00 0.00 0.00 2.15
170 171 7.413438 CCACTCTTAGCTTTTGACATGTATCAC 60.413 40.741 0.00 0.00 0.00 3.06
171 172 7.118245 CACTCTTAGCTTTTGACATGTATCACA 59.882 37.037 0.00 0.00 0.00 3.58
172 173 7.661437 ACTCTTAGCTTTTGACATGTATCACAA 59.339 33.333 0.00 0.00 0.00 3.33
173 174 8.565896 TCTTAGCTTTTGACATGTATCACAAT 57.434 30.769 0.00 0.00 0.00 2.71
174 175 9.013229 TCTTAGCTTTTGACATGTATCACAATT 57.987 29.630 0.00 0.00 0.00 2.32
175 176 8.969121 TTAGCTTTTGACATGTATCACAATTG 57.031 30.769 3.24 3.24 0.00 2.32
176 177 5.865552 AGCTTTTGACATGTATCACAATTGC 59.134 36.000 5.05 6.50 0.00 3.56
177 178 5.062558 GCTTTTGACATGTATCACAATTGCC 59.937 40.000 5.05 0.00 0.00 4.52
178 179 5.718724 TTTGACATGTATCACAATTGCCA 57.281 34.783 5.05 0.00 0.00 4.92
179 180 4.700268 TGACATGTATCACAATTGCCAC 57.300 40.909 5.05 0.00 0.00 5.01
180 181 4.334552 TGACATGTATCACAATTGCCACT 58.665 39.130 5.05 0.00 0.00 4.00
181 182 4.395854 TGACATGTATCACAATTGCCACTC 59.604 41.667 5.05 0.00 0.00 3.51
182 183 4.592942 ACATGTATCACAATTGCCACTCT 58.407 39.130 5.05 0.00 0.00 3.24
183 184 5.744171 ACATGTATCACAATTGCCACTCTA 58.256 37.500 5.05 0.00 0.00 2.43
184 185 6.179756 ACATGTATCACAATTGCCACTCTAA 58.820 36.000 5.05 0.00 0.00 2.10
185 186 6.658816 ACATGTATCACAATTGCCACTCTAAA 59.341 34.615 5.05 0.00 0.00 1.85
186 187 7.340232 ACATGTATCACAATTGCCACTCTAAAT 59.660 33.333 5.05 0.00 0.00 1.40
187 188 7.701539 TGTATCACAATTGCCACTCTAAATT 57.298 32.000 5.05 0.00 0.00 1.82
188 189 8.800370 TGTATCACAATTGCCACTCTAAATTA 57.200 30.769 5.05 0.00 0.00 1.40
189 190 9.407380 TGTATCACAATTGCCACTCTAAATTAT 57.593 29.630 5.05 0.00 0.00 1.28
192 193 8.984891 TCACAATTGCCACTCTAAATTATTTG 57.015 30.769 5.05 0.00 0.00 2.32
193 194 8.584157 TCACAATTGCCACTCTAAATTATTTGT 58.416 29.630 5.05 0.00 0.00 2.83
194 195 9.206870 CACAATTGCCACTCTAAATTATTTGTT 57.793 29.630 5.05 0.00 0.00 2.83
195 196 9.777297 ACAATTGCCACTCTAAATTATTTGTTT 57.223 25.926 5.05 0.00 0.00 2.83
199 200 8.082334 TGCCACTCTAAATTATTTGTTTTTGC 57.918 30.769 0.00 0.00 0.00 3.68
200 201 7.172361 TGCCACTCTAAATTATTTGTTTTTGCC 59.828 33.333 0.00 0.00 0.00 4.52
201 202 7.172361 GCCACTCTAAATTATTTGTTTTTGCCA 59.828 33.333 0.00 0.00 0.00 4.92
202 203 8.495148 CCACTCTAAATTATTTGTTTTTGCCAC 58.505 33.333 0.00 0.00 0.00 5.01
203 204 8.213812 CACTCTAAATTATTTGTTTTTGCCACG 58.786 33.333 0.00 0.00 0.00 4.94
204 205 7.383843 ACTCTAAATTATTTGTTTTTGCCACGG 59.616 33.333 0.00 0.00 0.00 4.94
205 206 7.434492 TCTAAATTATTTGTTTTTGCCACGGA 58.566 30.769 0.00 0.00 0.00 4.69
206 207 6.927294 AAATTATTTGTTTTTGCCACGGAA 57.073 29.167 0.00 0.00 0.00 4.30
207 208 7.503521 AAATTATTTGTTTTTGCCACGGAAT 57.496 28.000 0.00 0.00 0.00 3.01
208 209 5.914085 TTATTTGTTTTTGCCACGGAATG 57.086 34.783 0.00 0.00 0.00 2.67
217 218 3.495124 CCACGGAATGGCAAAAGTG 57.505 52.632 0.00 0.00 43.24 3.16
218 219 0.958091 CCACGGAATGGCAAAAGTGA 59.042 50.000 14.36 0.00 43.24 3.41
219 220 1.545582 CCACGGAATGGCAAAAGTGAT 59.454 47.619 14.36 0.00 43.24 3.06
220 221 2.752354 CCACGGAATGGCAAAAGTGATA 59.248 45.455 14.36 0.00 43.24 2.15
221 222 3.381272 CCACGGAATGGCAAAAGTGATAT 59.619 43.478 14.36 0.00 43.24 1.63
222 223 4.578516 CCACGGAATGGCAAAAGTGATATA 59.421 41.667 14.36 0.00 43.24 0.86
223 224 5.241506 CCACGGAATGGCAAAAGTGATATAT 59.758 40.000 14.36 0.00 43.24 0.86
224 225 6.239008 CCACGGAATGGCAAAAGTGATATATT 60.239 38.462 14.36 0.00 43.24 1.28
225 226 6.638063 CACGGAATGGCAAAAGTGATATATTG 59.362 38.462 9.20 0.00 0.00 1.90
226 227 6.321181 ACGGAATGGCAAAAGTGATATATTGT 59.679 34.615 0.00 0.00 0.00 2.71
227 228 6.857964 CGGAATGGCAAAAGTGATATATTGTC 59.142 38.462 0.00 0.00 0.00 3.18
228 229 7.468494 CGGAATGGCAAAAGTGATATATTGTCA 60.468 37.037 0.00 0.00 41.11 3.58
229 230 8.196771 GGAATGGCAAAAGTGATATATTGTCAA 58.803 33.333 0.00 0.00 40.35 3.18
230 231 9.585099 GAATGGCAAAAGTGATATATTGTCAAA 57.415 29.630 0.00 0.00 40.35 2.69
231 232 9.941325 AATGGCAAAAGTGATATATTGTCAAAA 57.059 25.926 0.00 0.00 40.35 2.44
232 233 8.984891 TGGCAAAAGTGATATATTGTCAAAAG 57.015 30.769 0.00 0.00 34.74 2.27
233 234 7.545265 TGGCAAAAGTGATATATTGTCAAAAGC 59.455 33.333 0.00 0.00 34.74 3.51
234 235 7.761249 GGCAAAAGTGATATATTGTCAAAAGCT 59.239 33.333 0.00 0.00 0.00 3.74
235 236 9.787532 GCAAAAGTGATATATTGTCAAAAGCTA 57.212 29.630 0.00 0.00 0.00 3.32
242 243 9.330063 TGATATATTGTCAAAAGCTAAGAGTGG 57.670 33.333 0.00 0.00 0.00 4.00
243 244 4.773323 ATTGTCAAAAGCTAAGAGTGGC 57.227 40.909 0.00 0.00 0.00 5.01
244 245 3.207265 TGTCAAAAGCTAAGAGTGGCA 57.793 42.857 0.00 0.00 32.62 4.92
245 246 3.550820 TGTCAAAAGCTAAGAGTGGCAA 58.449 40.909 0.00 0.00 32.62 4.52
246 247 3.951037 TGTCAAAAGCTAAGAGTGGCAAA 59.049 39.130 0.00 0.00 32.62 3.68
247 248 4.400884 TGTCAAAAGCTAAGAGTGGCAAAA 59.599 37.500 0.00 0.00 32.62 2.44
248 249 4.978580 GTCAAAAGCTAAGAGTGGCAAAAG 59.021 41.667 0.00 0.00 32.62 2.27
249 250 4.644685 TCAAAAGCTAAGAGTGGCAAAAGT 59.355 37.500 0.00 0.00 32.62 2.66
250 251 4.574599 AAAGCTAAGAGTGGCAAAAGTG 57.425 40.909 0.00 0.00 32.62 3.16
251 252 3.492102 AGCTAAGAGTGGCAAAAGTGA 57.508 42.857 0.00 0.00 32.62 3.41
252 253 3.820557 AGCTAAGAGTGGCAAAAGTGAA 58.179 40.909 0.00 0.00 32.62 3.18
253 254 4.207165 AGCTAAGAGTGGCAAAAGTGAAA 58.793 39.130 0.00 0.00 32.62 2.69
254 255 4.829492 AGCTAAGAGTGGCAAAAGTGAAAT 59.171 37.500 0.00 0.00 32.62 2.17
255 256 4.919754 GCTAAGAGTGGCAAAAGTGAAATG 59.080 41.667 0.00 0.00 0.00 2.32
256 257 5.507985 GCTAAGAGTGGCAAAAGTGAAATGT 60.508 40.000 0.00 0.00 0.00 2.71
257 258 4.574599 AGAGTGGCAAAAGTGAAATGTC 57.425 40.909 0.00 0.00 0.00 3.06
258 259 3.953612 AGAGTGGCAAAAGTGAAATGTCA 59.046 39.130 0.00 0.00 0.00 3.58
259 260 4.402155 AGAGTGGCAAAAGTGAAATGTCAA 59.598 37.500 0.00 0.00 34.87 3.18
260 261 5.083533 AGTGGCAAAAGTGAAATGTCAAA 57.916 34.783 0.00 0.00 34.87 2.69
261 262 5.673514 AGTGGCAAAAGTGAAATGTCAAAT 58.326 33.333 0.00 0.00 34.87 2.32
262 263 6.114767 AGTGGCAAAAGTGAAATGTCAAATT 58.885 32.000 0.00 0.00 34.87 1.82
263 264 6.258507 AGTGGCAAAAGTGAAATGTCAAATTC 59.741 34.615 0.00 0.00 34.87 2.17
264 265 6.258507 GTGGCAAAAGTGAAATGTCAAATTCT 59.741 34.615 0.00 0.00 34.87 2.40
265 266 7.437862 GTGGCAAAAGTGAAATGTCAAATTCTA 59.562 33.333 0.00 0.00 34.87 2.10
266 267 7.652909 TGGCAAAAGTGAAATGTCAAATTCTAG 59.347 33.333 0.00 0.00 34.87 2.43
267 268 7.867403 GGCAAAAGTGAAATGTCAAATTCTAGA 59.133 33.333 0.00 0.00 34.87 2.43
268 269 8.909671 GCAAAAGTGAAATGTCAAATTCTAGAG 58.090 33.333 0.00 0.00 34.87 2.43
269 270 9.956720 CAAAAGTGAAATGTCAAATTCTAGAGT 57.043 29.630 0.00 0.00 34.87 3.24
270 271 9.956720 AAAAGTGAAATGTCAAATTCTAGAGTG 57.043 29.630 0.00 0.00 34.87 3.51
271 272 7.678947 AGTGAAATGTCAAATTCTAGAGTGG 57.321 36.000 0.00 0.00 34.87 4.00
272 273 6.150140 AGTGAAATGTCAAATTCTAGAGTGGC 59.850 38.462 0.00 0.00 34.87 5.01
273 274 6.003326 TGAAATGTCAAATTCTAGAGTGGCA 58.997 36.000 9.14 9.14 0.00 4.92
274 275 6.660521 TGAAATGTCAAATTCTAGAGTGGCAT 59.339 34.615 12.12 12.12 37.91 4.40
275 276 7.828717 TGAAATGTCAAATTCTAGAGTGGCATA 59.171 33.333 16.17 3.83 35.34 3.14
276 277 8.579850 AAATGTCAAATTCTAGAGTGGCATAA 57.420 30.769 16.17 0.00 35.34 1.90
277 278 7.798596 ATGTCAAATTCTAGAGTGGCATAAG 57.201 36.000 14.93 0.00 34.66 1.73
278 279 5.586243 TGTCAAATTCTAGAGTGGCATAAGC 59.414 40.000 3.98 0.00 41.10 3.09
279 280 5.586243 GTCAAATTCTAGAGTGGCATAAGCA 59.414 40.000 0.00 0.00 44.61 3.91
280 281 6.094048 GTCAAATTCTAGAGTGGCATAAGCAA 59.906 38.462 0.00 0.00 44.61 3.91
281 282 6.658816 TCAAATTCTAGAGTGGCATAAGCAAA 59.341 34.615 0.00 0.00 44.61 3.68
282 283 6.690194 AATTCTAGAGTGGCATAAGCAAAG 57.310 37.500 0.00 0.00 44.61 2.77
283 284 4.826274 TCTAGAGTGGCATAAGCAAAGT 57.174 40.909 0.00 0.00 44.61 2.66
284 285 5.165961 TCTAGAGTGGCATAAGCAAAGTT 57.834 39.130 0.00 0.00 44.61 2.66
285 286 4.937620 TCTAGAGTGGCATAAGCAAAGTTG 59.062 41.667 0.00 0.00 44.61 3.16
286 287 2.821969 AGAGTGGCATAAGCAAAGTTGG 59.178 45.455 0.00 0.00 44.61 3.77
287 288 1.273327 AGTGGCATAAGCAAAGTTGGC 59.727 47.619 0.00 0.00 44.61 4.52
288 289 1.000731 GTGGCATAAGCAAAGTTGGCA 59.999 47.619 4.74 0.00 44.61 4.92
289 290 1.690893 TGGCATAAGCAAAGTTGGCAA 59.309 42.857 4.74 0.00 44.61 4.52
290 291 2.103771 TGGCATAAGCAAAGTTGGCAAA 59.896 40.909 4.74 0.00 44.61 3.68
291 292 3.137533 GGCATAAGCAAAGTTGGCAAAA 58.862 40.909 4.74 0.00 44.61 2.44
292 293 3.563390 GGCATAAGCAAAGTTGGCAAAAA 59.437 39.130 4.74 0.00 44.61 1.94
293 294 4.526625 GCATAAGCAAAGTTGGCAAAAAC 58.473 39.130 4.74 0.00 41.58 2.43
294 295 4.273235 GCATAAGCAAAGTTGGCAAAAACT 59.727 37.500 4.74 0.00 40.43 2.66
295 296 5.465056 GCATAAGCAAAGTTGGCAAAAACTA 59.535 36.000 4.74 0.00 38.96 2.24
296 297 6.346838 GCATAAGCAAAGTTGGCAAAAACTAG 60.347 38.462 4.74 0.00 38.96 2.57
297 298 5.337578 AAGCAAAGTTGGCAAAAACTAGA 57.662 34.783 4.74 0.00 39.48 2.43
298 299 4.936891 AGCAAAGTTGGCAAAAACTAGAG 58.063 39.130 4.74 0.00 39.48 2.43
299 300 4.402474 AGCAAAGTTGGCAAAAACTAGAGT 59.598 37.500 4.74 0.00 39.48 3.24
300 301 5.592688 AGCAAAGTTGGCAAAAACTAGAGTA 59.407 36.000 4.74 0.00 39.48 2.59
301 302 5.915196 GCAAAGTTGGCAAAAACTAGAGTAG 59.085 40.000 0.00 0.00 39.48 2.57
302 303 5.690997 AAGTTGGCAAAAACTAGAGTAGC 57.309 39.130 0.00 0.00 39.48 3.58
303 304 4.714632 AGTTGGCAAAAACTAGAGTAGCA 58.285 39.130 0.00 0.00 38.62 3.49
304 305 5.130350 AGTTGGCAAAAACTAGAGTAGCAA 58.870 37.500 0.00 0.00 38.62 3.91
305 306 5.592688 AGTTGGCAAAAACTAGAGTAGCAAA 59.407 36.000 0.00 0.00 38.62 3.68
306 307 6.096282 AGTTGGCAAAAACTAGAGTAGCAAAA 59.904 34.615 0.00 0.00 38.62 2.44
307 308 6.458232 TGGCAAAAACTAGAGTAGCAAAAA 57.542 33.333 0.00 0.00 0.00 1.94
308 309 6.270064 TGGCAAAAACTAGAGTAGCAAAAAC 58.730 36.000 0.00 0.00 0.00 2.43
309 310 6.127591 TGGCAAAAACTAGAGTAGCAAAAACA 60.128 34.615 0.00 0.00 0.00 2.83
310 311 6.754675 GGCAAAAACTAGAGTAGCAAAAACAA 59.245 34.615 0.00 0.00 0.00 2.83
311 312 7.276878 GGCAAAAACTAGAGTAGCAAAAACAAA 59.723 33.333 0.00 0.00 0.00 2.83
312 313 8.321005 GCAAAAACTAGAGTAGCAAAAACAAAG 58.679 33.333 0.00 0.00 0.00 2.77
313 314 9.353999 CAAAAACTAGAGTAGCAAAAACAAAGT 57.646 29.630 0.00 0.00 0.00 2.66
314 315 9.923143 AAAAACTAGAGTAGCAAAAACAAAGTT 57.077 25.926 0.00 0.00 0.00 2.66
315 316 9.923143 AAAACTAGAGTAGCAAAAACAAAGTTT 57.077 25.926 0.00 0.00 35.57 2.66
316 317 9.923143 AAACTAGAGTAGCAAAAACAAAGTTTT 57.077 25.926 0.00 2.26 31.38 2.43
317 318 9.569167 AACTAGAGTAGCAAAAACAAAGTTTTC 57.431 29.630 8.16 0.00 0.00 2.29
318 319 8.188799 ACTAGAGTAGCAAAAACAAAGTTTTCC 58.811 33.333 8.16 3.86 0.00 3.13
319 320 6.338146 AGAGTAGCAAAAACAAAGTTTTCCC 58.662 36.000 8.16 3.56 0.00 3.97
320 321 5.424757 AGTAGCAAAAACAAAGTTTTCCCC 58.575 37.500 8.16 1.50 0.00 4.81
321 322 4.293662 AGCAAAAACAAAGTTTTCCCCA 57.706 36.364 8.16 0.00 0.00 4.96
322 323 4.657013 AGCAAAAACAAAGTTTTCCCCAA 58.343 34.783 8.16 0.00 0.00 4.12
323 324 5.073428 AGCAAAAACAAAGTTTTCCCCAAA 58.927 33.333 8.16 0.00 0.00 3.28
324 325 5.182950 AGCAAAAACAAAGTTTTCCCCAAAG 59.817 36.000 8.16 0.00 0.00 2.77
325 326 5.182190 GCAAAAACAAAGTTTTCCCCAAAGA 59.818 36.000 8.16 0.00 0.00 2.52
326 327 6.294231 GCAAAAACAAAGTTTTCCCCAAAGAA 60.294 34.615 8.16 0.00 0.00 2.52
327 328 7.652727 CAAAAACAAAGTTTTCCCCAAAGAAA 58.347 30.769 8.16 0.00 33.98 2.52
328 329 7.825331 AAAACAAAGTTTTCCCCAAAGAAAA 57.175 28.000 2.26 0.00 42.07 2.29
329 330 7.825331 AAACAAAGTTTTCCCCAAAGAAAAA 57.175 28.000 1.31 0.00 44.88 1.94
330 331 8.415950 AAACAAAGTTTTCCCCAAAGAAAAAT 57.584 26.923 1.31 0.00 44.88 1.82
331 332 7.624360 ACAAAGTTTTCCCCAAAGAAAAATC 57.376 32.000 1.31 0.00 44.88 2.17
332 333 6.601613 ACAAAGTTTTCCCCAAAGAAAAATCC 59.398 34.615 1.31 0.00 44.88 3.01
333 334 5.966853 AGTTTTCCCCAAAGAAAAATCCA 57.033 34.783 1.31 0.00 44.88 3.41
334 335 6.320434 AGTTTTCCCCAAAGAAAAATCCAA 57.680 33.333 1.31 0.00 44.88 3.53
335 336 6.910191 AGTTTTCCCCAAAGAAAAATCCAAT 58.090 32.000 1.31 0.00 44.88 3.16
336 337 6.772233 AGTTTTCCCCAAAGAAAAATCCAATG 59.228 34.615 1.31 0.00 44.88 2.82
337 338 6.506538 TTTCCCCAAAGAAAAATCCAATGA 57.493 33.333 0.00 0.00 32.90 2.57
338 339 5.482163 TCCCCAAAGAAAAATCCAATGAC 57.518 39.130 0.00 0.00 0.00 3.06
339 340 4.285775 TCCCCAAAGAAAAATCCAATGACC 59.714 41.667 0.00 0.00 0.00 4.02
340 341 4.565444 CCCCAAAGAAAAATCCAATGACCC 60.565 45.833 0.00 0.00 0.00 4.46
341 342 4.565444 CCCAAAGAAAAATCCAATGACCCC 60.565 45.833 0.00 0.00 0.00 4.95
342 343 4.041444 CCAAAGAAAAATCCAATGACCCCA 59.959 41.667 0.00 0.00 0.00 4.96
343 344 5.455899 CCAAAGAAAAATCCAATGACCCCAA 60.456 40.000 0.00 0.00 0.00 4.12
344 345 5.903198 AAGAAAAATCCAATGACCCCAAA 57.097 34.783 0.00 0.00 0.00 3.28
345 346 5.903198 AGAAAAATCCAATGACCCCAAAA 57.097 34.783 0.00 0.00 0.00 2.44
346 347 6.452757 AGAAAAATCCAATGACCCCAAAAT 57.547 33.333 0.00 0.00 0.00 1.82
347 348 6.475504 AGAAAAATCCAATGACCCCAAAATC 58.524 36.000 0.00 0.00 0.00 2.17
348 349 4.470334 AAATCCAATGACCCCAAAATCG 57.530 40.909 0.00 0.00 0.00 3.34
349 350 2.889170 TCCAATGACCCCAAAATCGA 57.111 45.000 0.00 0.00 0.00 3.59
350 351 2.442413 TCCAATGACCCCAAAATCGAC 58.558 47.619 0.00 0.00 0.00 4.20
351 352 2.041081 TCCAATGACCCCAAAATCGACT 59.959 45.455 0.00 0.00 0.00 4.18
352 353 2.164219 CCAATGACCCCAAAATCGACTG 59.836 50.000 0.00 0.00 0.00 3.51
353 354 3.081061 CAATGACCCCAAAATCGACTGA 58.919 45.455 0.00 0.00 0.00 3.41
354 355 2.178912 TGACCCCAAAATCGACTGAC 57.821 50.000 0.00 0.00 0.00 3.51
355 356 1.271163 TGACCCCAAAATCGACTGACC 60.271 52.381 0.00 0.00 0.00 4.02
356 357 0.037734 ACCCCAAAATCGACTGACCC 59.962 55.000 0.00 0.00 0.00 4.46
357 358 0.037590 CCCCAAAATCGACTGACCCA 59.962 55.000 0.00 0.00 0.00 4.51
358 359 1.546773 CCCCAAAATCGACTGACCCAA 60.547 52.381 0.00 0.00 0.00 4.12
359 360 2.235016 CCCAAAATCGACTGACCCAAA 58.765 47.619 0.00 0.00 0.00 3.28
360 361 2.625790 CCCAAAATCGACTGACCCAAAA 59.374 45.455 0.00 0.00 0.00 2.44
361 362 3.305335 CCCAAAATCGACTGACCCAAAAG 60.305 47.826 0.00 0.00 0.00 2.27
362 363 3.317993 CCAAAATCGACTGACCCAAAAGT 59.682 43.478 0.00 0.00 0.00 2.66
363 364 4.290155 CAAAATCGACTGACCCAAAAGTG 58.710 43.478 0.00 0.00 0.00 3.16
364 365 3.485463 AATCGACTGACCCAAAAGTGA 57.515 42.857 0.00 0.00 0.00 3.41
365 366 2.992124 TCGACTGACCCAAAAGTGAA 57.008 45.000 0.00 0.00 0.00 3.18
366 367 3.269538 TCGACTGACCCAAAAGTGAAA 57.730 42.857 0.00 0.00 0.00 2.69
367 368 3.815809 TCGACTGACCCAAAAGTGAAAT 58.184 40.909 0.00 0.00 0.00 2.17
368 369 4.204012 TCGACTGACCCAAAAGTGAAATT 58.796 39.130 0.00 0.00 0.00 1.82
369 370 4.642885 TCGACTGACCCAAAAGTGAAATTT 59.357 37.500 0.00 0.00 0.00 1.82
370 371 4.976116 CGACTGACCCAAAAGTGAAATTTC 59.024 41.667 11.41 11.41 0.00 2.17
371 372 5.449862 CGACTGACCCAAAAGTGAAATTTCA 60.450 40.000 16.91 16.91 34.20 2.69
372 373 5.906073 ACTGACCCAAAAGTGAAATTTCAG 58.094 37.500 21.05 10.04 37.98 3.02
373 374 4.692228 TGACCCAAAAGTGAAATTTCAGC 58.308 39.130 21.05 15.04 37.98 4.26
374 375 4.405358 TGACCCAAAAGTGAAATTTCAGCT 59.595 37.500 21.05 16.83 37.98 4.24
375 376 4.696455 ACCCAAAAGTGAAATTTCAGCTG 58.304 39.130 21.05 7.63 37.98 4.24
376 377 4.405358 ACCCAAAAGTGAAATTTCAGCTGA 59.595 37.500 21.05 13.74 37.98 4.26
377 378 4.746611 CCCAAAAGTGAAATTTCAGCTGAC 59.253 41.667 21.05 9.16 37.98 3.51
378 379 5.452356 CCCAAAAGTGAAATTTCAGCTGACT 60.452 40.000 21.05 11.28 37.98 3.41
379 380 5.461078 CCAAAAGTGAAATTTCAGCTGACTG 59.539 40.000 21.05 15.77 45.95 3.51
394 395 5.799213 AGCTGACTGAAATGTAGCTAAAGT 58.201 37.500 0.00 0.00 42.45 2.66
395 396 5.641209 AGCTGACTGAAATGTAGCTAAAGTG 59.359 40.000 0.00 0.00 42.45 3.16
396 397 5.163814 GCTGACTGAAATGTAGCTAAAGTGG 60.164 44.000 0.00 0.00 0.00 4.00
397 398 6.109156 TGACTGAAATGTAGCTAAAGTGGA 57.891 37.500 0.00 0.00 0.00 4.02
398 399 6.530120 TGACTGAAATGTAGCTAAAGTGGAA 58.470 36.000 0.00 0.00 0.00 3.53
399 400 6.650807 TGACTGAAATGTAGCTAAAGTGGAAG 59.349 38.462 0.00 0.00 0.00 3.46
400 401 5.940470 ACTGAAATGTAGCTAAAGTGGAAGG 59.060 40.000 0.00 0.00 0.00 3.46
401 402 6.121776 TGAAATGTAGCTAAAGTGGAAGGA 57.878 37.500 0.00 0.00 0.00 3.36
402 403 6.539173 TGAAATGTAGCTAAAGTGGAAGGAA 58.461 36.000 0.00 0.00 0.00 3.36
403 404 7.001674 TGAAATGTAGCTAAAGTGGAAGGAAA 58.998 34.615 0.00 0.00 0.00 3.13
404 405 7.174946 TGAAATGTAGCTAAAGTGGAAGGAAAG 59.825 37.037 0.00 0.00 0.00 2.62
405 406 5.818678 TGTAGCTAAAGTGGAAGGAAAGA 57.181 39.130 0.00 0.00 0.00 2.52
406 407 5.794894 TGTAGCTAAAGTGGAAGGAAAGAG 58.205 41.667 0.00 0.00 0.00 2.85
407 408 4.984146 AGCTAAAGTGGAAGGAAAGAGT 57.016 40.909 0.00 0.00 0.00 3.24
408 409 5.311844 AGCTAAAGTGGAAGGAAAGAGTT 57.688 39.130 0.00 0.00 0.00 3.01
409 410 5.696030 AGCTAAAGTGGAAGGAAAGAGTTT 58.304 37.500 0.00 0.00 0.00 2.66
410 411 5.765677 AGCTAAAGTGGAAGGAAAGAGTTTC 59.234 40.000 0.00 0.00 38.94 2.78
485 489 0.175989 GTTGGAAGGAGAGCGGTAGG 59.824 60.000 0.00 0.00 0.00 3.18
505 509 3.504520 AGGGGTACAAACTTTATTGCGTG 59.495 43.478 0.00 0.00 33.52 5.34
849 859 1.270305 TGCTTCAGGTTCCAGTCGAAG 60.270 52.381 0.00 0.00 36.89 3.79
869 879 3.775202 AGACATGATCGTAGAACTGCAC 58.225 45.455 0.00 0.00 43.58 4.57
870 880 3.193479 AGACATGATCGTAGAACTGCACA 59.807 43.478 0.00 0.00 43.58 4.57
871 881 3.925379 ACATGATCGTAGAACTGCACAA 58.075 40.909 0.00 0.00 43.58 3.33
873 883 3.378911 TGATCGTAGAACTGCACAACA 57.621 42.857 0.00 0.00 43.58 3.33
874 884 3.925379 TGATCGTAGAACTGCACAACAT 58.075 40.909 0.00 0.00 43.58 2.71
876 886 5.660460 TGATCGTAGAACTGCACAACATAT 58.340 37.500 0.00 0.00 43.58 1.78
886 896 9.102757 AGAACTGCACAACATATAAGAGTATTG 57.897 33.333 0.00 0.00 0.00 1.90
888 898 7.564793 ACTGCACAACATATAAGAGTATTGGA 58.435 34.615 0.00 0.00 0.00 3.53
889 899 7.495934 ACTGCACAACATATAAGAGTATTGGAC 59.504 37.037 0.00 0.00 0.00 4.02
891 901 7.992608 TGCACAACATATAAGAGTATTGGACAT 59.007 33.333 0.00 0.00 0.00 3.06
892 902 8.840321 GCACAACATATAAGAGTATTGGACATT 58.160 33.333 0.00 0.00 0.00 2.71
919 935 1.268743 GCGTGGCCATTCTAGAAATGC 60.269 52.381 9.72 14.24 0.00 3.56
931 947 9.525409 CCATTCTAGAAATGCAATAAGAAAAGG 57.475 33.333 9.71 0.12 0.00 3.11
942 959 5.239525 GCAATAAGAAAAGGTATGGCTCGAT 59.760 40.000 0.00 0.00 0.00 3.59
943 960 6.566753 GCAATAAGAAAAGGTATGGCTCGATC 60.567 42.308 0.00 0.00 0.00 3.69
1231 1254 3.160585 CCCAGTTCACCAGCTCCA 58.839 61.111 0.00 0.00 0.00 3.86
1650 1673 1.012486 GGTGGTTGATGACGACGTCC 61.012 60.000 24.33 11.06 37.81 4.79
1771 1800 1.078214 ATGTAGCCTGCATGCACGT 60.078 52.632 18.46 5.10 0.00 4.49
1816 1860 1.302271 TGCACTGAGGCAGCAAGAG 60.302 57.895 0.00 0.00 39.25 2.85
1828 1872 2.607892 GCAAGAGCACACGTGACCC 61.608 63.158 25.01 9.59 41.58 4.46
1829 1873 2.029073 AAGAGCACACGTGACCCG 59.971 61.111 25.01 8.56 44.03 5.28
1850 1898 3.004839 CGTAGAGGTGTAGATGGTGGATG 59.995 52.174 0.00 0.00 0.00 3.51
1942 1990 1.915228 GACCTGGGCCTTGAGCATA 59.085 57.895 4.53 0.00 46.50 3.14
1954 2002 3.544684 CTTGAGCATATTGTACCAGCCA 58.455 45.455 0.00 0.00 0.00 4.75
2009 2061 0.736636 CATGCATGCACAAGACCGAT 59.263 50.000 25.37 0.00 0.00 4.18
2021 2105 2.568696 AGACCGATCGAACACATCAG 57.431 50.000 18.66 0.00 0.00 2.90
2051 2135 3.307242 GCTAGCTGTGAATTTACGTGGAG 59.693 47.826 7.70 0.00 0.00 3.86
2066 2150 3.554692 GAGGCGTCCGTGCATTCG 61.555 66.667 0.00 0.00 36.28 3.34
2067 2151 4.373116 AGGCGTCCGTGCATTCGT 62.373 61.111 0.00 0.00 36.28 3.85
2069 2153 4.794241 GCGTCCGTGCATTCGTGC 62.794 66.667 0.00 0.00 34.15 5.34
2138 2222 1.739562 GAGCAGCACCACGAGAAGG 60.740 63.158 0.00 0.00 0.00 3.46
2169 2253 1.294780 GCGATCTGCCTCCCCATAG 59.705 63.158 0.00 0.00 37.76 2.23
2196 2280 2.738521 GTGCGCACACTCGGATGT 60.739 61.111 34.52 0.00 43.85 3.06
2268 2355 6.239176 GCTAGTCAGCTGGATATAGAACTTGT 60.239 42.308 15.13 0.00 44.93 3.16
2271 2358 6.820656 AGTCAGCTGGATATAGAACTTGTTTG 59.179 38.462 15.13 0.00 0.00 2.93
2272 2359 5.586243 TCAGCTGGATATAGAACTTGTTTGC 59.414 40.000 15.13 0.00 0.00 3.68
2273 2360 5.587844 CAGCTGGATATAGAACTTGTTTGCT 59.412 40.000 5.57 0.00 0.00 3.91
2274 2361 6.094603 CAGCTGGATATAGAACTTGTTTGCTT 59.905 38.462 5.57 0.00 0.00 3.91
2275 2362 6.660949 AGCTGGATATAGAACTTGTTTGCTTT 59.339 34.615 0.00 0.00 0.00 3.51
2276 2363 7.177392 AGCTGGATATAGAACTTGTTTGCTTTT 59.823 33.333 0.00 0.00 0.00 2.27
2277 2364 7.814587 GCTGGATATAGAACTTGTTTGCTTTTT 59.185 33.333 0.00 0.00 0.00 1.94
2278 2365 9.132521 CTGGATATAGAACTTGTTTGCTTTTTG 57.867 33.333 0.00 0.00 0.00 2.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.455447 CAAAAACTAGAGTGGCAAAAACAAAG 58.545 34.615 0.00 0.00 0.00 2.77
1 2 6.128418 GCAAAAACTAGAGTGGCAAAAACAAA 60.128 34.615 0.00 0.00 0.00 2.83
2 3 5.350091 GCAAAAACTAGAGTGGCAAAAACAA 59.650 36.000 0.00 0.00 0.00 2.83
3 4 4.867608 GCAAAAACTAGAGTGGCAAAAACA 59.132 37.500 0.00 0.00 0.00 2.83
4 5 4.270084 GGCAAAAACTAGAGTGGCAAAAAC 59.730 41.667 0.00 0.00 36.61 2.43
5 6 4.081420 TGGCAAAAACTAGAGTGGCAAAAA 60.081 37.500 0.00 0.00 42.78 1.94
6 7 3.449018 TGGCAAAAACTAGAGTGGCAAAA 59.551 39.130 0.00 0.00 42.78 2.44
7 8 3.027412 TGGCAAAAACTAGAGTGGCAAA 58.973 40.909 0.00 0.00 42.78 3.68
8 9 2.660572 TGGCAAAAACTAGAGTGGCAA 58.339 42.857 0.00 0.00 42.78 4.52
9 10 2.356665 TGGCAAAAACTAGAGTGGCA 57.643 45.000 0.00 4.38 43.41 4.92
10 11 2.623416 AGTTGGCAAAAACTAGAGTGGC 59.377 45.455 0.00 1.65 38.62 5.01
11 12 4.918810 AAGTTGGCAAAAACTAGAGTGG 57.081 40.909 0.00 0.00 39.48 4.00
12 13 5.890334 TCAAAGTTGGCAAAAACTAGAGTG 58.110 37.500 0.00 0.00 39.48 3.51
13 14 6.715347 ATCAAAGTTGGCAAAAACTAGAGT 57.285 33.333 0.00 0.00 39.48 3.24
14 15 9.132521 CATAATCAAAGTTGGCAAAAACTAGAG 57.867 33.333 0.00 0.00 39.48 2.43
15 16 7.598493 GCATAATCAAAGTTGGCAAAAACTAGA 59.402 33.333 0.00 0.00 39.48 2.43
16 17 7.148590 GGCATAATCAAAGTTGGCAAAAACTAG 60.149 37.037 0.00 0.00 39.48 2.57
17 18 6.648725 GGCATAATCAAAGTTGGCAAAAACTA 59.351 34.615 0.00 0.00 39.48 2.24
18 19 5.469760 GGCATAATCAAAGTTGGCAAAAACT 59.530 36.000 0.00 0.00 42.21 2.66
19 20 5.238214 TGGCATAATCAAAGTTGGCAAAAAC 59.762 36.000 0.00 0.00 41.05 2.43
20 21 5.238214 GTGGCATAATCAAAGTTGGCAAAAA 59.762 36.000 0.00 0.00 44.76 1.94
21 22 4.754114 GTGGCATAATCAAAGTTGGCAAAA 59.246 37.500 0.00 0.00 44.76 2.44
22 23 4.040217 AGTGGCATAATCAAAGTTGGCAAA 59.960 37.500 0.00 0.00 44.76 3.68
23 24 3.577848 AGTGGCATAATCAAAGTTGGCAA 59.422 39.130 0.00 0.00 44.76 4.52
24 25 3.164268 AGTGGCATAATCAAAGTTGGCA 58.836 40.909 0.00 0.00 41.64 4.92
25 26 3.445096 AGAGTGGCATAATCAAAGTTGGC 59.555 43.478 0.00 0.00 35.41 4.52
26 27 6.115446 TCTAGAGTGGCATAATCAAAGTTGG 58.885 40.000 0.00 0.00 0.00 3.77
27 28 7.615582 TTCTAGAGTGGCATAATCAAAGTTG 57.384 36.000 0.00 0.00 0.00 3.16
28 29 8.814038 AATTCTAGAGTGGCATAATCAAAGTT 57.186 30.769 0.00 0.00 0.00 2.66
29 30 8.680903 CAAATTCTAGAGTGGCATAATCAAAGT 58.319 33.333 0.00 0.00 0.00 2.66
30 31 8.896744 TCAAATTCTAGAGTGGCATAATCAAAG 58.103 33.333 0.00 0.00 0.00 2.77
31 32 8.677300 GTCAAATTCTAGAGTGGCATAATCAAA 58.323 33.333 0.00 0.00 0.00 2.69
32 33 7.828717 TGTCAAATTCTAGAGTGGCATAATCAA 59.171 33.333 3.98 0.00 0.00 2.57
33 34 7.337938 TGTCAAATTCTAGAGTGGCATAATCA 58.662 34.615 3.98 0.00 0.00 2.57
34 35 7.792374 TGTCAAATTCTAGAGTGGCATAATC 57.208 36.000 3.98 0.00 0.00 1.75
35 36 8.216423 AGATGTCAAATTCTAGAGTGGCATAAT 58.784 33.333 15.96 8.61 36.49 1.28
36 37 7.568349 AGATGTCAAATTCTAGAGTGGCATAA 58.432 34.615 15.96 0.00 36.49 1.90
37 38 7.129457 AGATGTCAAATTCTAGAGTGGCATA 57.871 36.000 15.96 0.00 36.49 3.14
38 39 5.999044 AGATGTCAAATTCTAGAGTGGCAT 58.001 37.500 15.94 15.94 38.95 4.40
39 40 5.046376 TGAGATGTCAAATTCTAGAGTGGCA 60.046 40.000 9.14 9.14 0.00 4.92
40 41 5.293079 GTGAGATGTCAAATTCTAGAGTGGC 59.707 44.000 0.00 0.00 33.27 5.01
41 42 6.638610 AGTGAGATGTCAAATTCTAGAGTGG 58.361 40.000 0.00 0.00 33.27 4.00
42 43 8.545229 AAAGTGAGATGTCAAATTCTAGAGTG 57.455 34.615 0.00 0.00 33.27 3.51
43 44 8.997323 CAAAAGTGAGATGTCAAATTCTAGAGT 58.003 33.333 0.00 0.00 33.27 3.24
44 45 7.961827 GCAAAAGTGAGATGTCAAATTCTAGAG 59.038 37.037 0.00 0.00 33.27 2.43
45 46 7.094634 GGCAAAAGTGAGATGTCAAATTCTAGA 60.095 37.037 0.00 0.00 33.27 2.43
46 47 7.025963 GGCAAAAGTGAGATGTCAAATTCTAG 58.974 38.462 0.00 0.00 33.27 2.43
47 48 6.489700 TGGCAAAAGTGAGATGTCAAATTCTA 59.510 34.615 0.00 0.00 33.27 2.10
48 49 5.302568 TGGCAAAAGTGAGATGTCAAATTCT 59.697 36.000 0.00 0.00 33.27 2.40
49 50 5.403466 GTGGCAAAAGTGAGATGTCAAATTC 59.597 40.000 0.00 0.00 33.27 2.17
50 51 5.069516 AGTGGCAAAAGTGAGATGTCAAATT 59.930 36.000 0.00 0.00 33.27 1.82
51 52 4.586001 AGTGGCAAAAGTGAGATGTCAAAT 59.414 37.500 0.00 0.00 33.27 2.32
52 53 3.953612 AGTGGCAAAAGTGAGATGTCAAA 59.046 39.130 0.00 0.00 33.27 2.69
53 54 3.554934 AGTGGCAAAAGTGAGATGTCAA 58.445 40.909 0.00 0.00 33.27 3.18
54 55 3.141398 GAGTGGCAAAAGTGAGATGTCA 58.859 45.455 0.00 0.00 0.00 3.58
55 56 3.406764 AGAGTGGCAAAAGTGAGATGTC 58.593 45.455 0.00 0.00 0.00 3.06
56 57 3.498774 AGAGTGGCAAAAGTGAGATGT 57.501 42.857 0.00 0.00 0.00 3.06
57 58 4.142730 GCTAAGAGTGGCAAAAGTGAGATG 60.143 45.833 0.00 0.00 0.00 2.90
58 59 4.006319 GCTAAGAGTGGCAAAAGTGAGAT 58.994 43.478 0.00 0.00 0.00 2.75
59 60 3.071602 AGCTAAGAGTGGCAAAAGTGAGA 59.928 43.478 0.00 0.00 32.62 3.27
60 61 3.406764 AGCTAAGAGTGGCAAAAGTGAG 58.593 45.455 0.00 0.00 32.62 3.51
61 62 3.492102 AGCTAAGAGTGGCAAAAGTGA 57.508 42.857 0.00 0.00 32.62 3.41
62 63 4.574599 AAAGCTAAGAGTGGCAAAAGTG 57.425 40.909 0.00 0.00 32.62 3.16
63 64 4.644685 TCAAAAGCTAAGAGTGGCAAAAGT 59.355 37.500 0.00 0.00 32.62 2.66
64 65 4.978580 GTCAAAAGCTAAGAGTGGCAAAAG 59.021 41.667 0.00 0.00 32.62 2.27
65 66 4.400884 TGTCAAAAGCTAAGAGTGGCAAAA 59.599 37.500 0.00 0.00 32.62 2.44
66 67 3.951037 TGTCAAAAGCTAAGAGTGGCAAA 59.049 39.130 0.00 0.00 32.62 3.68
67 68 3.550820 TGTCAAAAGCTAAGAGTGGCAA 58.449 40.909 0.00 0.00 32.62 4.52
68 69 3.207265 TGTCAAAAGCTAAGAGTGGCA 57.793 42.857 0.00 0.00 32.62 4.92
69 70 4.773323 ATTGTCAAAAGCTAAGAGTGGC 57.227 40.909 0.00 0.00 0.00 5.01
70 71 6.801539 TGTATTGTCAAAAGCTAAGAGTGG 57.198 37.500 0.00 0.00 0.00 4.00
71 72 7.959651 GTGATGTATTGTCAAAAGCTAAGAGTG 59.040 37.037 0.00 0.00 0.00 3.51
72 73 7.661437 TGTGATGTATTGTCAAAAGCTAAGAGT 59.339 33.333 0.00 0.00 0.00 3.24
73 74 8.032952 TGTGATGTATTGTCAAAAGCTAAGAG 57.967 34.615 0.00 0.00 0.00 2.85
74 75 7.977789 TGTGATGTATTGTCAAAAGCTAAGA 57.022 32.000 0.00 0.00 0.00 2.10
75 76 9.630098 ATTTGTGATGTATTGTCAAAAGCTAAG 57.370 29.630 0.00 0.00 32.99 2.18
76 77 9.409312 CATTTGTGATGTATTGTCAAAAGCTAA 57.591 29.630 0.00 0.00 32.99 3.09
77 78 7.541783 GCATTTGTGATGTATTGTCAAAAGCTA 59.458 33.333 0.00 0.00 38.64 3.32
78 79 6.366877 GCATTTGTGATGTATTGTCAAAAGCT 59.633 34.615 0.00 0.00 38.64 3.74
79 80 6.401367 GGCATTTGTGATGTATTGTCAAAAGC 60.401 38.462 0.00 0.00 39.93 3.51
80 81 6.645827 TGGCATTTGTGATGTATTGTCAAAAG 59.354 34.615 0.00 0.00 32.99 2.27
81 82 6.519382 TGGCATTTGTGATGTATTGTCAAAA 58.481 32.000 0.00 0.00 32.99 2.44
82 83 6.094193 TGGCATTTGTGATGTATTGTCAAA 57.906 33.333 0.00 0.00 33.61 2.69
83 84 5.718724 TGGCATTTGTGATGTATTGTCAA 57.281 34.783 0.00 0.00 0.00 3.18
84 85 5.918426 ATGGCATTTGTGATGTATTGTCA 57.082 34.783 0.00 0.00 0.00 3.58
85 86 5.750067 GGAATGGCATTTGTGATGTATTGTC 59.250 40.000 14.93 0.00 0.00 3.18
86 87 5.663456 GGAATGGCATTTGTGATGTATTGT 58.337 37.500 14.93 0.00 0.00 2.71
87 88 4.741185 CGGAATGGCATTTGTGATGTATTG 59.259 41.667 14.93 0.00 0.00 1.90
88 89 4.402155 ACGGAATGGCATTTGTGATGTATT 59.598 37.500 14.93 0.00 0.00 1.89
89 90 3.953612 ACGGAATGGCATTTGTGATGTAT 59.046 39.130 14.93 0.00 0.00 2.29
90 91 3.128415 CACGGAATGGCATTTGTGATGTA 59.872 43.478 28.30 0.00 33.45 2.29
91 92 2.094597 CACGGAATGGCATTTGTGATGT 60.095 45.455 28.30 14.00 33.45 3.06
92 93 2.532235 CACGGAATGGCATTTGTGATG 58.468 47.619 28.30 14.82 33.45 3.07
93 94 1.477700 CCACGGAATGGCATTTGTGAT 59.522 47.619 31.34 7.34 43.24 3.06
94 95 0.887247 CCACGGAATGGCATTTGTGA 59.113 50.000 31.34 0.00 43.24 3.58
95 96 3.422122 CCACGGAATGGCATTTGTG 57.578 52.632 26.64 26.64 43.24 3.33
104 105 2.346099 ATCGTTTTTGCCACGGAATG 57.654 45.000 0.00 0.00 38.23 2.67
105 106 4.712122 ATTATCGTTTTTGCCACGGAAT 57.288 36.364 0.00 0.00 38.23 3.01
106 107 4.506886 AATTATCGTTTTTGCCACGGAA 57.493 36.364 0.00 0.00 38.23 4.30
107 108 4.506886 AAATTATCGTTTTTGCCACGGA 57.493 36.364 0.00 0.00 38.23 4.69
108 109 5.583969 AAAAATTATCGTTTTTGCCACGG 57.416 34.783 0.00 0.00 39.20 4.94
127 128 9.528018 CTAAGAGTGGCAAAAGTGAAATAAAAA 57.472 29.630 0.00 0.00 0.00 1.94
128 129 7.651704 GCTAAGAGTGGCAAAAGTGAAATAAAA 59.348 33.333 0.00 0.00 0.00 1.52
129 130 7.014230 AGCTAAGAGTGGCAAAAGTGAAATAAA 59.986 33.333 0.00 0.00 32.62 1.40
130 131 6.490040 AGCTAAGAGTGGCAAAAGTGAAATAA 59.510 34.615 0.00 0.00 32.62 1.40
131 132 6.003950 AGCTAAGAGTGGCAAAAGTGAAATA 58.996 36.000 0.00 0.00 32.62 1.40
132 133 4.829492 AGCTAAGAGTGGCAAAAGTGAAAT 59.171 37.500 0.00 0.00 32.62 2.17
133 134 4.207165 AGCTAAGAGTGGCAAAAGTGAAA 58.793 39.130 0.00 0.00 32.62 2.69
134 135 3.820557 AGCTAAGAGTGGCAAAAGTGAA 58.179 40.909 0.00 0.00 32.62 3.18
135 136 3.492102 AGCTAAGAGTGGCAAAAGTGA 57.508 42.857 0.00 0.00 32.62 3.41
136 137 4.574599 AAAGCTAAGAGTGGCAAAAGTG 57.425 40.909 0.00 0.00 32.62 3.16
137 138 4.644685 TCAAAAGCTAAGAGTGGCAAAAGT 59.355 37.500 0.00 0.00 32.62 2.66
138 139 4.978580 GTCAAAAGCTAAGAGTGGCAAAAG 59.021 41.667 0.00 0.00 32.62 2.27
139 140 4.400884 TGTCAAAAGCTAAGAGTGGCAAAA 59.599 37.500 0.00 0.00 32.62 2.44
140 141 3.951037 TGTCAAAAGCTAAGAGTGGCAAA 59.049 39.130 0.00 0.00 32.62 3.68
141 142 3.550820 TGTCAAAAGCTAAGAGTGGCAA 58.449 40.909 0.00 0.00 32.62 4.52
142 143 3.207265 TGTCAAAAGCTAAGAGTGGCA 57.793 42.857 0.00 0.00 32.62 4.92
143 144 3.503748 ACATGTCAAAAGCTAAGAGTGGC 59.496 43.478 0.00 0.00 0.00 5.01
144 145 6.595326 TGATACATGTCAAAAGCTAAGAGTGG 59.405 38.462 0.00 0.00 0.00 4.00
145 146 7.118245 TGTGATACATGTCAAAAGCTAAGAGTG 59.882 37.037 0.00 0.00 0.00 3.51
146 147 7.161404 TGTGATACATGTCAAAAGCTAAGAGT 58.839 34.615 0.00 0.00 0.00 3.24
147 148 7.601073 TGTGATACATGTCAAAAGCTAAGAG 57.399 36.000 0.00 0.00 0.00 2.85
148 149 7.977789 TTGTGATACATGTCAAAAGCTAAGA 57.022 32.000 0.00 0.00 0.00 2.10
149 150 9.069078 CAATTGTGATACATGTCAAAAGCTAAG 57.931 33.333 0.00 0.00 29.34 2.18
150 151 7.541783 GCAATTGTGATACATGTCAAAAGCTAA 59.458 33.333 0.00 0.00 29.34 3.09
151 152 7.028962 GCAATTGTGATACATGTCAAAAGCTA 58.971 34.615 0.00 0.00 29.34 3.32
152 153 5.865552 GCAATTGTGATACATGTCAAAAGCT 59.134 36.000 0.00 0.00 29.34 3.74
153 154 5.062558 GGCAATTGTGATACATGTCAAAAGC 59.937 40.000 0.00 8.74 29.34 3.51
154 155 6.089820 GTGGCAATTGTGATACATGTCAAAAG 59.910 38.462 0.00 0.00 26.35 2.27
155 156 5.925397 GTGGCAATTGTGATACATGTCAAAA 59.075 36.000 0.00 0.00 26.35 2.44
156 157 5.243507 AGTGGCAATTGTGATACATGTCAAA 59.756 36.000 0.00 0.00 26.35 2.69
157 158 4.766373 AGTGGCAATTGTGATACATGTCAA 59.234 37.500 0.00 0.02 26.35 3.18
158 159 4.334552 AGTGGCAATTGTGATACATGTCA 58.665 39.130 0.00 0.00 0.00 3.58
159 160 4.637534 AGAGTGGCAATTGTGATACATGTC 59.362 41.667 0.00 0.00 0.00 3.06
160 161 4.592942 AGAGTGGCAATTGTGATACATGT 58.407 39.130 7.40 2.69 0.00 3.21
161 162 6.682423 TTAGAGTGGCAATTGTGATACATG 57.318 37.500 7.40 0.00 0.00 3.21
162 163 7.886629 ATTTAGAGTGGCAATTGTGATACAT 57.113 32.000 7.40 0.00 0.00 2.29
163 164 7.701539 AATTTAGAGTGGCAATTGTGATACA 57.298 32.000 7.40 0.00 0.00 2.29
166 167 9.590451 CAAATAATTTAGAGTGGCAATTGTGAT 57.410 29.630 7.40 0.00 0.00 3.06
167 168 8.584157 ACAAATAATTTAGAGTGGCAATTGTGA 58.416 29.630 7.40 0.00 0.00 3.58
168 169 8.761575 ACAAATAATTTAGAGTGGCAATTGTG 57.238 30.769 7.40 0.00 0.00 3.33
169 170 9.777297 AAACAAATAATTTAGAGTGGCAATTGT 57.223 25.926 7.40 0.00 0.00 2.71
173 174 8.555361 GCAAAAACAAATAATTTAGAGTGGCAA 58.445 29.630 0.00 0.00 0.00 4.52
174 175 7.172361 GGCAAAAACAAATAATTTAGAGTGGCA 59.828 33.333 0.00 0.00 0.00 4.92
175 176 7.172361 TGGCAAAAACAAATAATTTAGAGTGGC 59.828 33.333 0.00 0.00 0.00 5.01
176 177 8.495148 GTGGCAAAAACAAATAATTTAGAGTGG 58.505 33.333 0.00 0.00 0.00 4.00
177 178 8.213812 CGTGGCAAAAACAAATAATTTAGAGTG 58.786 33.333 0.00 0.00 0.00 3.51
178 179 7.383843 CCGTGGCAAAAACAAATAATTTAGAGT 59.616 33.333 0.00 0.00 0.00 3.24
179 180 7.596995 TCCGTGGCAAAAACAAATAATTTAGAG 59.403 33.333 0.00 0.00 0.00 2.43
180 181 7.434492 TCCGTGGCAAAAACAAATAATTTAGA 58.566 30.769 0.00 0.00 0.00 2.10
181 182 7.644986 TCCGTGGCAAAAACAAATAATTTAG 57.355 32.000 0.00 0.00 0.00 1.85
182 183 8.499162 CATTCCGTGGCAAAAACAAATAATTTA 58.501 29.630 0.00 0.00 0.00 1.40
183 184 6.927294 TTCCGTGGCAAAAACAAATAATTT 57.073 29.167 0.00 0.00 0.00 1.82
184 185 6.072783 CCATTCCGTGGCAAAAACAAATAATT 60.073 34.615 0.00 0.00 42.12 1.40
185 186 5.411053 CCATTCCGTGGCAAAAACAAATAAT 59.589 36.000 0.00 0.00 42.12 1.28
186 187 4.752101 CCATTCCGTGGCAAAAACAAATAA 59.248 37.500 0.00 0.00 42.12 1.40
187 188 4.310769 CCATTCCGTGGCAAAAACAAATA 58.689 39.130 0.00 0.00 42.12 1.40
188 189 3.137533 CCATTCCGTGGCAAAAACAAAT 58.862 40.909 0.00 0.00 42.12 2.32
189 190 2.555199 CCATTCCGTGGCAAAAACAAA 58.445 42.857 0.00 0.00 42.12 2.83
190 191 2.231215 CCATTCCGTGGCAAAAACAA 57.769 45.000 0.00 0.00 42.12 2.83
191 192 3.976339 CCATTCCGTGGCAAAAACA 57.024 47.368 0.00 0.00 42.12 2.83
200 201 4.637483 ATATCACTTTTGCCATTCCGTG 57.363 40.909 0.00 0.00 0.00 4.94
201 202 6.321181 ACAATATATCACTTTTGCCATTCCGT 59.679 34.615 0.00 0.00 0.00 4.69
202 203 6.738114 ACAATATATCACTTTTGCCATTCCG 58.262 36.000 0.00 0.00 0.00 4.30
203 204 7.715657 TGACAATATATCACTTTTGCCATTCC 58.284 34.615 0.00 0.00 0.00 3.01
204 205 9.585099 TTTGACAATATATCACTTTTGCCATTC 57.415 29.630 0.00 0.00 0.00 2.67
205 206 9.941325 TTTTGACAATATATCACTTTTGCCATT 57.059 25.926 0.00 0.00 0.00 3.16
206 207 9.590451 CTTTTGACAATATATCACTTTTGCCAT 57.410 29.630 0.00 0.00 0.00 4.40
207 208 7.545265 GCTTTTGACAATATATCACTTTTGCCA 59.455 33.333 0.00 0.00 0.00 4.92
208 209 7.761249 AGCTTTTGACAATATATCACTTTTGCC 59.239 33.333 0.00 0.00 0.00 4.52
209 210 8.693542 AGCTTTTGACAATATATCACTTTTGC 57.306 30.769 0.00 0.00 0.00 3.68
216 217 9.330063 CCACTCTTAGCTTTTGACAATATATCA 57.670 33.333 0.00 0.00 0.00 2.15
217 218 8.286097 GCCACTCTTAGCTTTTGACAATATATC 58.714 37.037 0.00 0.00 0.00 1.63
218 219 7.775093 TGCCACTCTTAGCTTTTGACAATATAT 59.225 33.333 0.00 0.00 0.00 0.86
219 220 7.109501 TGCCACTCTTAGCTTTTGACAATATA 58.890 34.615 0.00 0.00 0.00 0.86
220 221 5.945784 TGCCACTCTTAGCTTTTGACAATAT 59.054 36.000 0.00 0.00 0.00 1.28
221 222 5.312895 TGCCACTCTTAGCTTTTGACAATA 58.687 37.500 0.00 0.00 0.00 1.90
222 223 4.144297 TGCCACTCTTAGCTTTTGACAAT 58.856 39.130 0.00 0.00 0.00 2.71
223 224 3.550820 TGCCACTCTTAGCTTTTGACAA 58.449 40.909 0.00 0.00 0.00 3.18
224 225 3.207265 TGCCACTCTTAGCTTTTGACA 57.793 42.857 0.00 0.00 0.00 3.58
225 226 4.568152 TTTGCCACTCTTAGCTTTTGAC 57.432 40.909 0.00 0.00 0.00 3.18
226 227 4.644685 ACTTTTGCCACTCTTAGCTTTTGA 59.355 37.500 0.00 0.00 0.00 2.69
227 228 4.741676 CACTTTTGCCACTCTTAGCTTTTG 59.258 41.667 0.00 0.00 0.00 2.44
228 229 4.644685 TCACTTTTGCCACTCTTAGCTTTT 59.355 37.500 0.00 0.00 0.00 2.27
229 230 4.207165 TCACTTTTGCCACTCTTAGCTTT 58.793 39.130 0.00 0.00 0.00 3.51
230 231 3.820557 TCACTTTTGCCACTCTTAGCTT 58.179 40.909 0.00 0.00 0.00 3.74
231 232 3.492102 TCACTTTTGCCACTCTTAGCT 57.508 42.857 0.00 0.00 0.00 3.32
232 233 4.568152 TTTCACTTTTGCCACTCTTAGC 57.432 40.909 0.00 0.00 0.00 3.09
233 234 6.076981 ACATTTCACTTTTGCCACTCTTAG 57.923 37.500 0.00 0.00 0.00 2.18
234 235 5.592282 TGACATTTCACTTTTGCCACTCTTA 59.408 36.000 0.00 0.00 0.00 2.10
235 236 4.402155 TGACATTTCACTTTTGCCACTCTT 59.598 37.500 0.00 0.00 0.00 2.85
236 237 3.953612 TGACATTTCACTTTTGCCACTCT 59.046 39.130 0.00 0.00 0.00 3.24
237 238 4.305989 TGACATTTCACTTTTGCCACTC 57.694 40.909 0.00 0.00 0.00 3.51
238 239 4.734398 TTGACATTTCACTTTTGCCACT 57.266 36.364 0.00 0.00 0.00 4.00
239 240 5.989551 ATTTGACATTTCACTTTTGCCAC 57.010 34.783 0.00 0.00 0.00 5.01
240 241 6.347696 AGAATTTGACATTTCACTTTTGCCA 58.652 32.000 2.57 0.00 0.00 4.92
241 242 6.849588 AGAATTTGACATTTCACTTTTGCC 57.150 33.333 2.57 0.00 0.00 4.52
242 243 8.801715 TCTAGAATTTGACATTTCACTTTTGC 57.198 30.769 0.00 0.00 0.00 3.68
243 244 9.956720 ACTCTAGAATTTGACATTTCACTTTTG 57.043 29.630 0.00 0.00 0.00 2.44
244 245 9.956720 CACTCTAGAATTTGACATTTCACTTTT 57.043 29.630 0.00 0.00 0.00 2.27
245 246 8.571336 CCACTCTAGAATTTGACATTTCACTTT 58.429 33.333 0.00 0.00 0.00 2.66
246 247 7.308830 GCCACTCTAGAATTTGACATTTCACTT 60.309 37.037 0.00 0.00 0.00 3.16
247 248 6.150140 GCCACTCTAGAATTTGACATTTCACT 59.850 38.462 0.00 0.00 0.00 3.41
248 249 6.072508 TGCCACTCTAGAATTTGACATTTCAC 60.073 38.462 0.00 0.00 0.00 3.18
249 250 6.003326 TGCCACTCTAGAATTTGACATTTCA 58.997 36.000 0.00 0.00 0.00 2.69
250 251 6.500684 TGCCACTCTAGAATTTGACATTTC 57.499 37.500 0.00 0.00 0.00 2.17
251 252 8.579850 TTATGCCACTCTAGAATTTGACATTT 57.420 30.769 0.00 0.00 0.00 2.32
252 253 7.201767 GCTTATGCCACTCTAGAATTTGACATT 60.202 37.037 0.00 0.00 0.00 2.71
253 254 6.261826 GCTTATGCCACTCTAGAATTTGACAT 59.738 38.462 0.00 0.00 0.00 3.06
254 255 5.586243 GCTTATGCCACTCTAGAATTTGACA 59.414 40.000 0.00 0.00 0.00 3.58
255 256 5.586243 TGCTTATGCCACTCTAGAATTTGAC 59.414 40.000 0.00 0.00 38.71 3.18
256 257 5.744171 TGCTTATGCCACTCTAGAATTTGA 58.256 37.500 0.00 0.00 38.71 2.69
257 258 6.441093 TTGCTTATGCCACTCTAGAATTTG 57.559 37.500 0.00 0.00 38.71 2.32
258 259 6.660949 ACTTTGCTTATGCCACTCTAGAATTT 59.339 34.615 0.00 0.00 38.71 1.82
259 260 6.183347 ACTTTGCTTATGCCACTCTAGAATT 58.817 36.000 0.00 0.00 38.71 2.17
260 261 5.749462 ACTTTGCTTATGCCACTCTAGAAT 58.251 37.500 0.00 0.00 38.71 2.40
261 262 5.165961 ACTTTGCTTATGCCACTCTAGAA 57.834 39.130 0.00 0.00 38.71 2.10
262 263 4.826274 ACTTTGCTTATGCCACTCTAGA 57.174 40.909 0.00 0.00 38.71 2.43
263 264 4.095483 CCAACTTTGCTTATGCCACTCTAG 59.905 45.833 0.00 0.00 38.71 2.43
264 265 4.009675 CCAACTTTGCTTATGCCACTCTA 58.990 43.478 0.00 0.00 38.71 2.43
265 266 2.821969 CCAACTTTGCTTATGCCACTCT 59.178 45.455 0.00 0.00 38.71 3.24
266 267 2.672195 GCCAACTTTGCTTATGCCACTC 60.672 50.000 0.00 0.00 38.71 3.51
267 268 1.273327 GCCAACTTTGCTTATGCCACT 59.727 47.619 0.00 0.00 38.71 4.00
268 269 1.000731 TGCCAACTTTGCTTATGCCAC 59.999 47.619 0.00 0.00 38.71 5.01
269 270 1.336131 TGCCAACTTTGCTTATGCCA 58.664 45.000 0.00 0.00 38.71 4.92
270 271 2.453983 TTGCCAACTTTGCTTATGCC 57.546 45.000 0.00 0.00 38.71 4.40
271 272 4.273235 AGTTTTTGCCAACTTTGCTTATGC 59.727 37.500 0.00 0.00 32.81 3.14
272 273 5.989551 AGTTTTTGCCAACTTTGCTTATG 57.010 34.783 0.00 0.00 32.81 1.90
273 274 7.049799 TCTAGTTTTTGCCAACTTTGCTTAT 57.950 32.000 0.00 0.00 38.07 1.73
274 275 6.096282 ACTCTAGTTTTTGCCAACTTTGCTTA 59.904 34.615 0.00 0.00 38.07 3.09
275 276 5.105351 ACTCTAGTTTTTGCCAACTTTGCTT 60.105 36.000 0.00 0.00 38.07 3.91
276 277 4.402474 ACTCTAGTTTTTGCCAACTTTGCT 59.598 37.500 0.00 0.00 38.07 3.91
277 278 4.682787 ACTCTAGTTTTTGCCAACTTTGC 58.317 39.130 0.00 0.00 38.07 3.68
278 279 5.915196 GCTACTCTAGTTTTTGCCAACTTTG 59.085 40.000 0.00 0.00 38.07 2.77
279 280 5.592688 TGCTACTCTAGTTTTTGCCAACTTT 59.407 36.000 0.00 0.00 38.07 2.66
280 281 5.130350 TGCTACTCTAGTTTTTGCCAACTT 58.870 37.500 0.00 0.00 38.07 2.66
281 282 4.714632 TGCTACTCTAGTTTTTGCCAACT 58.285 39.130 0.00 0.00 40.28 3.16
282 283 5.432885 TTGCTACTCTAGTTTTTGCCAAC 57.567 39.130 0.00 0.00 0.00 3.77
283 284 6.458232 TTTTGCTACTCTAGTTTTTGCCAA 57.542 33.333 0.00 0.00 0.00 4.52
284 285 6.127591 TGTTTTTGCTACTCTAGTTTTTGCCA 60.128 34.615 0.00 0.00 0.00 4.92
285 286 6.270064 TGTTTTTGCTACTCTAGTTTTTGCC 58.730 36.000 0.00 0.00 0.00 4.52
286 287 7.749539 TTGTTTTTGCTACTCTAGTTTTTGC 57.250 32.000 0.00 0.00 0.00 3.68
287 288 9.353999 ACTTTGTTTTTGCTACTCTAGTTTTTG 57.646 29.630 0.00 0.00 0.00 2.44
288 289 9.923143 AACTTTGTTTTTGCTACTCTAGTTTTT 57.077 25.926 0.00 0.00 0.00 1.94
289 290 9.923143 AAACTTTGTTTTTGCTACTCTAGTTTT 57.077 25.926 0.00 0.00 30.45 2.43
290 291 9.923143 AAAACTTTGTTTTTGCTACTCTAGTTT 57.077 25.926 2.97 0.00 34.61 2.66
291 292 9.569167 GAAAACTTTGTTTTTGCTACTCTAGTT 57.431 29.630 9.36 0.00 0.00 2.24
292 293 8.188799 GGAAAACTTTGTTTTTGCTACTCTAGT 58.811 33.333 9.36 0.00 34.81 2.57
293 294 7.648112 GGGAAAACTTTGTTTTTGCTACTCTAG 59.352 37.037 9.36 0.00 37.08 2.43
294 295 7.417003 GGGGAAAACTTTGTTTTTGCTACTCTA 60.417 37.037 9.36 0.00 37.08 2.43
295 296 6.338146 GGGAAAACTTTGTTTTTGCTACTCT 58.662 36.000 9.36 0.00 37.08 3.24
296 297 5.522460 GGGGAAAACTTTGTTTTTGCTACTC 59.478 40.000 9.36 0.00 37.08 2.59
297 298 5.046231 TGGGGAAAACTTTGTTTTTGCTACT 60.046 36.000 9.36 0.00 37.08 2.57
298 299 5.179533 TGGGGAAAACTTTGTTTTTGCTAC 58.820 37.500 9.36 0.00 37.08 3.58
299 300 5.422214 TGGGGAAAACTTTGTTTTTGCTA 57.578 34.783 9.36 0.00 37.08 3.49
300 301 4.293662 TGGGGAAAACTTTGTTTTTGCT 57.706 36.364 9.36 0.00 37.08 3.91
301 302 5.182190 TCTTTGGGGAAAACTTTGTTTTTGC 59.818 36.000 9.36 0.00 36.39 3.68
302 303 6.809630 TCTTTGGGGAAAACTTTGTTTTTG 57.190 33.333 9.36 0.00 0.00 2.44
303 304 7.825331 TTTCTTTGGGGAAAACTTTGTTTTT 57.175 28.000 9.36 0.00 33.04 1.94
304 305 7.825331 TTTTCTTTGGGGAAAACTTTGTTTT 57.175 28.000 7.97 7.97 39.37 2.43
305 306 7.825331 TTTTTCTTTGGGGAAAACTTTGTTT 57.175 28.000 2.47 0.00 42.50 2.83
306 307 7.122055 GGATTTTTCTTTGGGGAAAACTTTGTT 59.878 33.333 2.47 0.00 42.50 2.83
307 308 6.601613 GGATTTTTCTTTGGGGAAAACTTTGT 59.398 34.615 2.47 0.00 42.50 2.83
308 309 6.601217 TGGATTTTTCTTTGGGGAAAACTTTG 59.399 34.615 2.47 0.00 42.50 2.77
309 310 6.726379 TGGATTTTTCTTTGGGGAAAACTTT 58.274 32.000 2.47 0.00 42.50 2.66
310 311 6.320434 TGGATTTTTCTTTGGGGAAAACTT 57.680 33.333 2.47 0.00 42.50 2.66
311 312 5.966853 TGGATTTTTCTTTGGGGAAAACT 57.033 34.783 2.47 0.00 42.50 2.66
312 313 6.770303 TCATTGGATTTTTCTTTGGGGAAAAC 59.230 34.615 2.47 0.00 42.50 2.43
313 314 6.770303 GTCATTGGATTTTTCTTTGGGGAAAA 59.230 34.615 0.00 0.00 41.54 2.29
314 315 6.295249 GTCATTGGATTTTTCTTTGGGGAAA 58.705 36.000 0.00 0.00 33.98 3.13
315 316 5.221823 GGTCATTGGATTTTTCTTTGGGGAA 60.222 40.000 0.00 0.00 0.00 3.97
316 317 4.285775 GGTCATTGGATTTTTCTTTGGGGA 59.714 41.667 0.00 0.00 0.00 4.81
317 318 4.565444 GGGTCATTGGATTTTTCTTTGGGG 60.565 45.833 0.00 0.00 0.00 4.96
318 319 4.565444 GGGGTCATTGGATTTTTCTTTGGG 60.565 45.833 0.00 0.00 0.00 4.12
319 320 4.041444 TGGGGTCATTGGATTTTTCTTTGG 59.959 41.667 0.00 0.00 0.00 3.28
320 321 5.226194 TGGGGTCATTGGATTTTTCTTTG 57.774 39.130 0.00 0.00 0.00 2.77
321 322 5.903198 TTGGGGTCATTGGATTTTTCTTT 57.097 34.783 0.00 0.00 0.00 2.52
322 323 5.903198 TTTGGGGTCATTGGATTTTTCTT 57.097 34.783 0.00 0.00 0.00 2.52
323 324 5.903198 TTTTGGGGTCATTGGATTTTTCT 57.097 34.783 0.00 0.00 0.00 2.52
324 325 5.351189 CGATTTTGGGGTCATTGGATTTTTC 59.649 40.000 0.00 0.00 0.00 2.29
325 326 5.012561 TCGATTTTGGGGTCATTGGATTTTT 59.987 36.000 0.00 0.00 0.00 1.94
326 327 4.530161 TCGATTTTGGGGTCATTGGATTTT 59.470 37.500 0.00 0.00 0.00 1.82
327 328 4.081697 GTCGATTTTGGGGTCATTGGATTT 60.082 41.667 0.00 0.00 0.00 2.17
328 329 3.447229 GTCGATTTTGGGGTCATTGGATT 59.553 43.478 0.00 0.00 0.00 3.01
329 330 3.023832 GTCGATTTTGGGGTCATTGGAT 58.976 45.455 0.00 0.00 0.00 3.41
330 331 2.041081 AGTCGATTTTGGGGTCATTGGA 59.959 45.455 0.00 0.00 0.00 3.53
331 332 2.164219 CAGTCGATTTTGGGGTCATTGG 59.836 50.000 0.00 0.00 0.00 3.16
332 333 3.081061 TCAGTCGATTTTGGGGTCATTG 58.919 45.455 0.00 0.00 0.00 2.82
333 334 3.081804 GTCAGTCGATTTTGGGGTCATT 58.918 45.455 0.00 0.00 0.00 2.57
334 335 2.618045 GGTCAGTCGATTTTGGGGTCAT 60.618 50.000 0.00 0.00 0.00 3.06
335 336 1.271163 GGTCAGTCGATTTTGGGGTCA 60.271 52.381 0.00 0.00 0.00 4.02
336 337 1.450025 GGTCAGTCGATTTTGGGGTC 58.550 55.000 0.00 0.00 0.00 4.46
337 338 0.037734 GGGTCAGTCGATTTTGGGGT 59.962 55.000 0.00 0.00 0.00 4.95
338 339 0.037590 TGGGTCAGTCGATTTTGGGG 59.962 55.000 0.00 0.00 0.00 4.96
339 340 1.904287 TTGGGTCAGTCGATTTTGGG 58.096 50.000 0.00 0.00 0.00 4.12
340 341 3.317993 ACTTTTGGGTCAGTCGATTTTGG 59.682 43.478 0.00 0.00 0.00 3.28
341 342 4.036262 TCACTTTTGGGTCAGTCGATTTTG 59.964 41.667 0.00 0.00 0.00 2.44
342 343 4.204012 TCACTTTTGGGTCAGTCGATTTT 58.796 39.130 0.00 0.00 0.00 1.82
343 344 3.815809 TCACTTTTGGGTCAGTCGATTT 58.184 40.909 0.00 0.00 0.00 2.17
344 345 3.485463 TCACTTTTGGGTCAGTCGATT 57.515 42.857 0.00 0.00 0.00 3.34
345 346 3.485463 TTCACTTTTGGGTCAGTCGAT 57.515 42.857 0.00 0.00 0.00 3.59
346 347 2.992124 TTCACTTTTGGGTCAGTCGA 57.008 45.000 0.00 0.00 0.00 4.20
347 348 4.568152 AATTTCACTTTTGGGTCAGTCG 57.432 40.909 0.00 0.00 0.00 4.18
348 349 5.901552 TGAAATTTCACTTTTGGGTCAGTC 58.098 37.500 16.91 0.00 31.01 3.51
349 350 5.682212 GCTGAAATTTCACTTTTGGGTCAGT 60.682 40.000 16.91 0.00 32.90 3.41
350 351 4.746611 GCTGAAATTTCACTTTTGGGTCAG 59.253 41.667 16.91 4.08 32.90 3.51
351 352 4.405358 AGCTGAAATTTCACTTTTGGGTCA 59.595 37.500 16.91 0.00 32.90 4.02
352 353 4.746611 CAGCTGAAATTTCACTTTTGGGTC 59.253 41.667 16.91 3.08 32.90 4.46
353 354 4.405358 TCAGCTGAAATTTCACTTTTGGGT 59.595 37.500 15.67 8.98 32.90 4.51
354 355 4.746611 GTCAGCTGAAATTTCACTTTTGGG 59.253 41.667 20.19 6.85 32.90 4.12
355 356 5.461078 CAGTCAGCTGAAATTTCACTTTTGG 59.539 40.000 20.19 7.55 45.28 3.28
356 357 6.506464 CAGTCAGCTGAAATTTCACTTTTG 57.494 37.500 20.19 11.99 45.28 2.44
370 371 5.641209 ACTTTAGCTACATTTCAGTCAGCTG 59.359 40.000 7.63 7.63 42.34 4.24
371 372 5.641209 CACTTTAGCTACATTTCAGTCAGCT 59.359 40.000 0.00 0.00 44.43 4.24
372 373 5.163814 CCACTTTAGCTACATTTCAGTCAGC 60.164 44.000 0.00 0.00 0.00 4.26
373 374 6.166279 TCCACTTTAGCTACATTTCAGTCAG 58.834 40.000 0.00 0.00 0.00 3.51
374 375 6.109156 TCCACTTTAGCTACATTTCAGTCA 57.891 37.500 0.00 0.00 0.00 3.41
375 376 6.092807 CCTTCCACTTTAGCTACATTTCAGTC 59.907 42.308 0.00 0.00 0.00 3.51
376 377 5.940470 CCTTCCACTTTAGCTACATTTCAGT 59.060 40.000 0.00 0.00 0.00 3.41
377 378 6.173339 TCCTTCCACTTTAGCTACATTTCAG 58.827 40.000 0.00 0.00 0.00 3.02
378 379 6.121776 TCCTTCCACTTTAGCTACATTTCA 57.878 37.500 0.00 0.00 0.00 2.69
379 380 7.390718 TCTTTCCTTCCACTTTAGCTACATTTC 59.609 37.037 0.00 0.00 0.00 2.17
380 381 7.231467 TCTTTCCTTCCACTTTAGCTACATTT 58.769 34.615 0.00 0.00 0.00 2.32
381 382 6.779860 TCTTTCCTTCCACTTTAGCTACATT 58.220 36.000 0.00 0.00 0.00 2.71
382 383 6.013293 ACTCTTTCCTTCCACTTTAGCTACAT 60.013 38.462 0.00 0.00 0.00 2.29
383 384 5.307196 ACTCTTTCCTTCCACTTTAGCTACA 59.693 40.000 0.00 0.00 0.00 2.74
384 385 5.795972 ACTCTTTCCTTCCACTTTAGCTAC 58.204 41.667 0.00 0.00 0.00 3.58
385 386 6.435292 AACTCTTTCCTTCCACTTTAGCTA 57.565 37.500 0.00 0.00 0.00 3.32
386 387 4.984146 ACTCTTTCCTTCCACTTTAGCT 57.016 40.909 0.00 0.00 0.00 3.32
387 388 6.003234 GAAACTCTTTCCTTCCACTTTAGC 57.997 41.667 0.00 0.00 33.56 3.09
400 401 8.360390 ACAAGTTTGATATTGGGAAACTCTTTC 58.640 33.333 0.00 0.00 38.64 2.62
401 402 8.250143 ACAAGTTTGATATTGGGAAACTCTTT 57.750 30.769 0.00 0.00 38.64 2.52
402 403 7.839680 ACAAGTTTGATATTGGGAAACTCTT 57.160 32.000 0.00 0.00 38.64 2.85
403 404 8.934023 TTACAAGTTTGATATTGGGAAACTCT 57.066 30.769 0.00 0.00 38.64 3.24
404 405 9.974980 TTTTACAAGTTTGATATTGGGAAACTC 57.025 29.630 0.00 0.00 38.64 3.01
485 489 3.253921 ACCACGCAATAAAGTTTGTACCC 59.746 43.478 0.00 0.00 0.00 3.69
505 509 3.460103 TGTTTGTTCCAGTTCGTAGACC 58.540 45.455 0.00 0.00 34.32 3.85
821 831 2.909006 TGGAACCTGAAGCAAGAGATCT 59.091 45.455 0.00 0.00 0.00 2.75
849 859 3.511699 TGTGCAGTTCTACGATCATGTC 58.488 45.455 0.00 0.00 0.00 3.06
852 862 3.925379 TGTTGTGCAGTTCTACGATCAT 58.075 40.909 0.00 0.00 0.00 2.45
874 884 9.440773 GCATGATCAATGTCCAATACTCTTATA 57.559 33.333 0.00 0.00 38.65 0.98
876 886 6.424812 CGCATGATCAATGTCCAATACTCTTA 59.575 38.462 0.00 0.00 38.65 2.10
885 895 1.381522 CCACGCATGATCAATGTCCA 58.618 50.000 0.00 0.00 38.65 4.02
886 896 0.029834 GCCACGCATGATCAATGTCC 59.970 55.000 0.00 0.00 38.65 4.02
888 898 0.680601 TGGCCACGCATGATCAATGT 60.681 50.000 0.00 0.00 38.65 2.71
889 899 0.671796 ATGGCCACGCATGATCAATG 59.328 50.000 8.16 0.00 39.49 2.82
891 901 0.740149 GAATGGCCACGCATGATCAA 59.260 50.000 8.16 0.00 0.00 2.57
892 902 0.107066 AGAATGGCCACGCATGATCA 60.107 50.000 8.16 0.00 0.00 2.92
893 903 1.802960 CTAGAATGGCCACGCATGATC 59.197 52.381 8.16 0.00 0.00 2.92
895 905 0.829990 TCTAGAATGGCCACGCATGA 59.170 50.000 8.16 0.76 0.00 3.07
919 935 6.483307 TGATCGAGCCATACCTTTTCTTATTG 59.517 38.462 0.00 0.00 0.00 1.90
931 947 0.786581 CGTGCATGATCGAGCCATAC 59.213 55.000 0.00 0.00 0.00 2.39
942 959 4.900154 TGCATCGTACGTGCATGA 57.100 50.000 28.98 15.25 46.76 3.07
1013 1030 0.675522 GAAGAAATGGCCGTTCCCGA 60.676 55.000 11.51 0.00 35.63 5.14
1212 1235 2.360475 GAGCTGGTGAACTGGGCC 60.360 66.667 0.00 0.00 0.00 5.80
1771 1800 1.337823 GCCTCCTAACTCTGCAACGAA 60.338 52.381 0.00 0.00 0.00 3.85
1828 1872 2.651455 TCCACCATCTACACCTCTACG 58.349 52.381 0.00 0.00 0.00 3.51
1829 1873 3.961408 ACATCCACCATCTACACCTCTAC 59.039 47.826 0.00 0.00 0.00 2.59
1830 1874 3.960755 CACATCCACCATCTACACCTCTA 59.039 47.826 0.00 0.00 0.00 2.43
1831 1875 2.768527 CACATCCACCATCTACACCTCT 59.231 50.000 0.00 0.00 0.00 3.69
1832 1876 2.743183 GCACATCCACCATCTACACCTC 60.743 54.545 0.00 0.00 0.00 3.85
1833 1877 1.210478 GCACATCCACCATCTACACCT 59.790 52.381 0.00 0.00 0.00 4.00
1834 1878 1.668419 GCACATCCACCATCTACACC 58.332 55.000 0.00 0.00 0.00 4.16
1835 1879 1.210478 AGGCACATCCACCATCTACAC 59.790 52.381 0.00 0.00 37.29 2.90
1850 1898 1.734465 CTCCGTTTCATCTCAAGGCAC 59.266 52.381 0.00 0.00 0.00 5.01
1942 1990 0.405585 AGCAAGGTGGCTGGTACAAT 59.594 50.000 0.00 0.00 43.89 2.71
1954 2002 0.180406 ACTCGTGGAACAAGCAAGGT 59.820 50.000 0.00 0.00 44.16 3.50
2009 2061 2.094700 GCTAGACCACTGATGTGTTCGA 60.095 50.000 0.00 0.00 40.03 3.71
2021 2105 3.810310 ATTCACAGCTAGCTAGACCAC 57.190 47.619 25.15 6.46 0.00 4.16
2051 2135 4.147322 CACGAATGCACGGACGCC 62.147 66.667 1.59 0.00 37.61 5.68
2064 2148 1.511850 CTGTTTCAGGTGATGCACGA 58.488 50.000 0.00 0.00 34.83 4.35
2118 2202 2.477972 CTTCTCGTGGTGCTGCTCGA 62.478 60.000 0.00 5.54 0.00 4.04
2119 2203 2.049156 TTCTCGTGGTGCTGCTCG 60.049 61.111 0.00 1.22 0.00 5.03
2129 2213 3.114616 CTGTGCGGCCTTCTCGTG 61.115 66.667 0.00 0.00 0.00 4.35
2196 2280 1.207339 CGCTACACACACGTACGGA 59.793 57.895 21.06 0.00 0.00 4.69
2201 2285 0.031043 TGTTAGCGCTACACACACGT 59.969 50.000 18.63 0.00 0.00 4.49
2230 2317 3.731264 GCTGACTAGCCACAAGTACTACG 60.731 52.174 0.00 0.00 44.33 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.