Multiple sequence alignment - TraesCS5A01G237900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G237900 chr5A 100.000 6050 0 0 1 6050 454396096 454402145 0.000000e+00 11173.0
1 TraesCS5A01G237900 chr5A 78.238 193 39 3 1069 1258 453877106 453876914 2.960000e-23 121.0
2 TraesCS5A01G237900 chr5A 96.825 63 2 0 1622 1684 364352152 364352090 8.290000e-19 106.0
3 TraesCS5A01G237900 chr5A 94.286 70 2 2 1616 1684 422875945 422875877 8.290000e-19 106.0
4 TraesCS5A01G237900 chr5D 88.559 2290 127 56 3827 6048 353481275 353483497 0.000000e+00 2652.0
5 TraesCS5A01G237900 chr5D 84.816 1686 118 70 1 1618 353477061 353478676 0.000000e+00 1568.0
6 TraesCS5A01G237900 chr5D 86.453 812 75 22 3015 3807 353479903 353480698 0.000000e+00 857.0
7 TraesCS5A01G237900 chr5D 84.700 634 36 20 2320 2903 353479235 353479857 1.460000e-160 577.0
8 TraesCS5A01G237900 chr5D 83.544 553 38 19 1707 2214 353478690 353479234 9.180000e-128 468.0
9 TraesCS5A01G237900 chr5D 77.835 194 38 5 1069 1258 352219254 352219446 1.380000e-21 115.0
10 TraesCS5A01G237900 chr5B 87.374 1687 110 45 3 1614 417437404 417439062 0.000000e+00 1840.0
11 TraesCS5A01G237900 chr5B 88.904 1424 84 34 3894 5295 417442281 417443652 0.000000e+00 1687.0
12 TraesCS5A01G237900 chr5B 84.185 1233 113 34 2610 3808 417440342 417441526 0.000000e+00 1122.0
13 TraesCS5A01G237900 chr5B 83.549 541 40 22 1703 2214 417439070 417439590 1.540000e-125 460.0
14 TraesCS5A01G237900 chr5B 93.194 191 10 1 5325 5512 417443736 417443926 1.660000e-70 278.0
15 TraesCS5A01G237900 chr5B 91.892 111 8 1 2216 2325 61528 61638 2.920000e-33 154.0
16 TraesCS5A01G237900 chr5B 96.104 77 2 1 3811 3887 417442104 417442179 2.290000e-24 124.0
17 TraesCS5A01G237900 chr5B 77.835 194 38 5 1069 1258 416851126 416850934 1.380000e-21 115.0
18 TraesCS5A01G237900 chr5B 87.500 104 7 2 2320 2417 417439591 417439694 1.380000e-21 115.0
19 TraesCS5A01G237900 chr5B 83.465 127 14 4 3820 3940 417442004 417441879 1.780000e-20 111.0
20 TraesCS5A01G237900 chr4B 93.458 107 7 0 2216 2322 462021992 462022098 6.280000e-35 159.0
21 TraesCS5A01G237900 chr4B 92.661 109 8 0 2214 2322 560409227 560409119 2.260000e-34 158.0
22 TraesCS5A01G237900 chr4B 92.523 107 8 0 2216 2322 49872733 49872627 2.920000e-33 154.0
23 TraesCS5A01G237900 chr4B 90.517 116 10 1 2215 2329 579460836 579460721 1.050000e-32 152.0
24 TraesCS5A01G237900 chr4B 91.589 107 9 0 2216 2322 193032943 193032837 1.360000e-31 148.0
25 TraesCS5A01G237900 chr4B 96.774 62 2 0 1624 1685 340684679 340684618 2.980000e-18 104.0
26 TraesCS5A01G237900 chr3B 92.523 107 8 0 2216 2322 633632812 633632706 2.920000e-33 154.0
27 TraesCS5A01G237900 chr2B 92.523 107 8 0 2216 2322 461774044 461774150 2.920000e-33 154.0
28 TraesCS5A01G237900 chr2B 78.673 211 38 7 1067 1274 601213132 601212926 3.800000e-27 134.0
29 TraesCS5A01G237900 chr7B 87.302 126 14 2 2216 2339 652557013 652556888 6.320000e-30 143.0
30 TraesCS5A01G237900 chr2D 79.798 198 34 6 1067 1261 512043240 512043046 8.180000e-29 139.0
31 TraesCS5A01G237900 chr2D 90.698 43 2 2 5969 6010 110931762 110931721 8.470000e-04 56.5
32 TraesCS5A01G237900 chr2A 79.293 198 35 6 1067 1261 655219599 655219405 3.800000e-27 134.0
33 TraesCS5A01G237900 chr2A 92.857 70 3 2 1616 1684 755180126 755180194 3.860000e-17 100.0
34 TraesCS5A01G237900 chr1D 84.091 132 19 1 5917 6046 435924230 435924361 6.370000e-25 126.0
35 TraesCS5A01G237900 chr1D 85.714 105 14 1 5882 5985 303004811 303004707 6.410000e-20 110.0
36 TraesCS5A01G237900 chr1D 96.875 64 2 0 1621 1684 23299586 23299649 2.310000e-19 108.0
37 TraesCS5A01G237900 chr6A 100.000 64 0 0 1623 1686 41580137 41580200 1.070000e-22 119.0
38 TraesCS5A01G237900 chr7A 98.361 61 1 0 1624 1684 621854669 621854729 2.310000e-19 108.0
39 TraesCS5A01G237900 chr3D 98.361 61 1 0 1624 1684 26287661 26287721 2.310000e-19 108.0
40 TraesCS5A01G237900 chr3D 90.411 73 5 2 1192 1263 388534334 388534263 1.800000e-15 95.3
41 TraesCS5A01G237900 chr3A 96.774 62 2 0 1620 1681 727071262 727071323 2.980000e-18 104.0
42 TraesCS5A01G237900 chr3A 90.278 72 5 2 1192 1262 509798809 509798739 6.460000e-15 93.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G237900 chr5A 454396096 454402145 6049 False 11173.000000 11173 100.000000 1 6050 1 chr5A.!!$F1 6049
1 TraesCS5A01G237900 chr5D 353477061 353483497 6436 False 1224.400000 2652 85.614400 1 6048 5 chr5D.!!$F2 6047
2 TraesCS5A01G237900 chr5B 417437404 417443926 6522 False 803.714286 1840 88.687143 3 5512 7 chr5B.!!$F2 5509

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
998 1091 0.103572 TAGGTGATTAAGCCGGCGAC 59.896 55.0 23.2 12.24 0.00 5.19 F
1637 1779 0.105039 CATGCTACTCCCTCCGTTCC 59.895 60.0 0.0 0.00 0.00 3.62 F
1764 1906 0.249155 CCGGCGAGGAATTAAGCGTA 60.249 55.0 9.3 0.00 45.00 4.42 F
2665 3399 0.249238 GCACCACGCTAGAGATGGAG 60.249 60.0 17.4 12.42 36.94 3.86 F
3809 4582 0.034616 CCGCCAAATCCAAAGCCAAA 59.965 50.0 0.0 0.00 0.00 3.28 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2301 2490 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40 R
2772 3514 0.538287 AGTTCCACCAAGCTTCCAGC 60.538 55.000 0.00 0.00 42.84 4.85 R
3425 4189 1.399791 GGAGAGCTGGCTGAATTTTCG 59.600 52.381 0.00 0.00 0.00 3.46 R
4083 5564 0.760567 TATCAGACTGGGGCGCATCT 60.761 55.000 10.83 7.61 0.00 2.90 R
5746 7326 0.247736 CGCCTGCTCCTACAAGAGTT 59.752 55.000 0.00 0.00 36.20 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 0.620700 TCTTCCAGGAACTAGCCCCC 60.621 60.000 0.00 0.00 36.02 5.40
77 78 2.911723 CAGAAACAGAAGCGTAGACTCG 59.088 50.000 0.00 0.00 0.00 4.18
78 79 2.553172 AGAAACAGAAGCGTAGACTCGT 59.447 45.455 0.00 0.00 0.00 4.18
79 80 3.004524 AGAAACAGAAGCGTAGACTCGTT 59.995 43.478 0.00 0.00 0.00 3.85
80 81 3.366440 AACAGAAGCGTAGACTCGTTT 57.634 42.857 0.00 0.00 37.01 3.60
81 82 4.494350 AACAGAAGCGTAGACTCGTTTA 57.506 40.909 0.00 0.00 34.75 2.01
82 83 4.698583 ACAGAAGCGTAGACTCGTTTAT 57.301 40.909 0.00 0.00 34.75 1.40
130 131 0.454196 GTGCGGCGTTGGGATTAAAT 59.546 50.000 9.37 0.00 0.00 1.40
131 132 1.671845 GTGCGGCGTTGGGATTAAATA 59.328 47.619 9.37 0.00 0.00 1.40
132 133 2.097791 GTGCGGCGTTGGGATTAAATAA 59.902 45.455 9.37 0.00 0.00 1.40
133 134 2.753452 TGCGGCGTTGGGATTAAATAAA 59.247 40.909 9.37 0.00 0.00 1.40
134 135 3.181495 TGCGGCGTTGGGATTAAATAAAG 60.181 43.478 9.37 0.00 0.00 1.85
135 136 3.181494 GCGGCGTTGGGATTAAATAAAGT 60.181 43.478 9.37 0.00 0.00 2.66
137 138 5.032220 CGGCGTTGGGATTAAATAAAGTTC 58.968 41.667 0.00 0.00 0.00 3.01
138 139 5.392165 CGGCGTTGGGATTAAATAAAGTTCA 60.392 40.000 0.00 0.00 0.00 3.18
139 140 6.033966 GGCGTTGGGATTAAATAAAGTTCAG 58.966 40.000 0.00 0.00 0.00 3.02
140 141 6.349860 GGCGTTGGGATTAAATAAAGTTCAGT 60.350 38.462 0.00 0.00 0.00 3.41
141 142 7.088272 GCGTTGGGATTAAATAAAGTTCAGTT 58.912 34.615 0.00 0.00 0.00 3.16
142 143 8.238631 GCGTTGGGATTAAATAAAGTTCAGTTA 58.761 33.333 0.00 0.00 0.00 2.24
158 159 9.536510 AAGTTCAGTTAAGACTAGAAGGATAGT 57.463 33.333 0.00 0.00 38.72 2.12
159 160 8.962679 AGTTCAGTTAAGACTAGAAGGATAGTG 58.037 37.037 0.00 0.00 36.13 2.74
160 161 7.336161 TCAGTTAAGACTAGAAGGATAGTGC 57.664 40.000 0.00 0.00 36.13 4.40
206 207 1.748493 CGAGAGGAGGAAGAGGACAAG 59.252 57.143 0.00 0.00 0.00 3.16
227 228 4.286320 ATCGGCGAGGCGATGGAC 62.286 66.667 28.96 0.00 0.00 4.02
315 316 2.464682 CCTCTCTGGCTCGCTTTTG 58.535 57.895 0.00 0.00 0.00 2.44
322 323 1.230635 TGGCTCGCTTTTGCTCTGAC 61.231 55.000 0.00 0.00 44.80 3.51
327 328 1.139989 CGCTTTTGCTCTGACGAAGA 58.860 50.000 0.00 0.00 44.80 2.87
328 329 1.526887 CGCTTTTGCTCTGACGAAGAA 59.473 47.619 0.00 0.00 44.80 2.52
356 357 3.707102 ACGAAAGATAAGGGAAGGGAGAG 59.293 47.826 0.00 0.00 0.00 3.20
389 390 2.223112 CCCGACATTTCTCGAAGCATTG 60.223 50.000 0.00 0.00 35.58 2.82
424 430 0.531090 CGTTGACGAAAGGACACCCA 60.531 55.000 0.00 0.00 43.02 4.51
430 436 0.168128 CGAAAGGACACCCAATTCGC 59.832 55.000 0.00 0.00 42.63 4.70
435 441 1.749258 GACACCCAATTCGCCCCTC 60.749 63.158 0.00 0.00 0.00 4.30
477 483 4.697756 CGTCCCACCGTGCACCAT 62.698 66.667 12.15 0.00 0.00 3.55
479 485 4.343323 TCCCACCGTGCACCATGG 62.343 66.667 21.92 21.92 45.34 3.66
480 486 4.343323 CCCACCGTGCACCATGGA 62.343 66.667 27.79 0.00 42.73 3.41
520 526 0.894184 GAGTCTCGTCCTGGTCCACA 60.894 60.000 0.00 0.00 0.00 4.17
577 583 3.095347 GCCACGGCTCTAGGGAAGG 62.095 68.421 0.00 0.00 38.26 3.46
578 584 2.501610 CACGGCTCTAGGGAAGGC 59.498 66.667 0.00 0.00 0.00 4.35
680 729 2.022623 CTCGCGCTCTGTCTCTCG 59.977 66.667 5.56 0.00 0.00 4.04
686 735 3.106552 CTCTGTCTCTCGCTCCGG 58.893 66.667 0.00 0.00 0.00 5.14
697 746 1.546476 CTCGCTCCGGCCTTTATATCT 59.454 52.381 0.00 0.00 34.44 1.98
700 749 1.404315 GCTCCGGCCTTTATATCTCCG 60.404 57.143 0.00 0.00 39.79 4.63
741 802 0.472471 AGGAGTAGAGAGGAGAGCCG 59.528 60.000 0.00 0.00 39.96 5.52
896 957 4.577246 CGCCGTCTCCTGCTAGCC 62.577 72.222 13.29 0.00 0.00 3.93
897 958 4.577246 GCCGTCTCCTGCTAGCCG 62.577 72.222 13.29 5.57 0.00 5.52
914 975 1.656875 CGCCTCTGCTTCTCGATCG 60.657 63.158 9.36 9.36 34.43 3.69
916 977 0.313672 GCCTCTGCTTCTCGATCGAT 59.686 55.000 19.78 0.00 33.53 3.59
923 984 2.223595 TGCTTCTCGATCGATCCTTGAC 60.224 50.000 19.78 5.55 0.00 3.18
925 986 3.626977 CTTCTCGATCGATCCTTGACTG 58.373 50.000 19.78 3.46 0.00 3.51
926 987 2.919228 TCTCGATCGATCCTTGACTGA 58.081 47.619 19.78 6.03 0.00 3.41
928 989 3.500299 TCTCGATCGATCCTTGACTGATC 59.500 47.826 19.78 0.00 36.18 2.92
971 1052 7.304497 ACACCAGCTTATTATTAGGTAGAGG 57.696 40.000 0.00 0.00 0.00 3.69
972 1053 7.073854 ACACCAGCTTATTATTAGGTAGAGGA 58.926 38.462 0.00 0.00 0.00 3.71
998 1091 0.103572 TAGGTGATTAAGCCGGCGAC 59.896 55.000 23.20 12.24 0.00 5.19
1035 1128 2.871099 CAGCAGCAGCAGCAGAAG 59.129 61.111 12.92 0.00 45.49 2.85
1263 1365 2.160417 GCTCAACACCTACGTACGTACT 59.840 50.000 23.60 9.32 0.00 2.73
1275 1379 2.570135 GTACGTACTACCCTCCTCCAG 58.430 57.143 18.47 0.00 0.00 3.86
1282 1386 0.784495 TACCCTCCTCCAGACACACT 59.216 55.000 0.00 0.00 0.00 3.55
1302 1406 6.751425 CACACTCTCTCTTTGCAATACTCTAG 59.249 42.308 0.00 0.00 0.00 2.43
1352 1462 2.407090 TCTGCACTGATCAACGACTTG 58.593 47.619 0.00 0.00 0.00 3.16
1370 1509 5.238006 ACTTGCGACTTGAGTAGAGTATC 57.762 43.478 0.00 0.00 0.00 2.24
1449 1591 9.010029 GTCCTCTTAGAGTGATTAGAGATTAGG 57.990 40.741 8.55 0.00 37.00 2.69
1504 1646 7.659390 AGCTTGTACCAGAAGAGATTATTATGC 59.341 37.037 0.00 0.00 0.00 3.14
1561 1703 0.670854 GTGTCCACGGAAAGCTCTCC 60.671 60.000 0.00 0.00 0.00 3.71
1570 1712 1.134936 GGAAAGCTCTCCGTCCTTCTC 60.135 57.143 0.00 0.00 0.00 2.87
1584 1726 1.807142 CCTTCTCGCTTTTGTTCTCCC 59.193 52.381 0.00 0.00 0.00 4.30
1594 1736 2.754946 TTGTTCTCCCCACGACATAC 57.245 50.000 0.00 0.00 0.00 2.39
1618 1760 3.124900 CGTACTCACGCTACGTAGC 57.875 57.895 32.93 32.93 42.05 3.58
1629 1771 2.708386 CTACGTAGCATGCTACTCCC 57.292 55.000 40.41 23.98 44.80 4.30
1630 1772 2.231529 CTACGTAGCATGCTACTCCCT 58.768 52.381 40.41 27.06 44.80 4.20
1631 1773 1.033574 ACGTAGCATGCTACTCCCTC 58.966 55.000 40.41 23.06 44.80 4.30
1633 1775 0.315568 GTAGCATGCTACTCCCTCCG 59.684 60.000 38.75 0.00 43.92 4.63
1634 1776 0.106167 TAGCATGCTACTCCCTCCGT 60.106 55.000 23.52 0.00 0.00 4.69
1635 1777 0.978146 AGCATGCTACTCCCTCCGTT 60.978 55.000 21.21 0.00 0.00 4.44
1636 1778 0.530870 GCATGCTACTCCCTCCGTTC 60.531 60.000 11.37 0.00 0.00 3.95
1637 1779 0.105039 CATGCTACTCCCTCCGTTCC 59.895 60.000 0.00 0.00 0.00 3.62
1638 1780 0.325296 ATGCTACTCCCTCCGTTCCA 60.325 55.000 0.00 0.00 0.00 3.53
1639 1781 0.543410 TGCTACTCCCTCCGTTCCAA 60.543 55.000 0.00 0.00 0.00 3.53
1640 1782 0.611714 GCTACTCCCTCCGTTCCAAA 59.388 55.000 0.00 0.00 0.00 3.28
1641 1783 1.209747 GCTACTCCCTCCGTTCCAAAT 59.790 52.381 0.00 0.00 0.00 2.32
1642 1784 2.355818 GCTACTCCCTCCGTTCCAAATT 60.356 50.000 0.00 0.00 0.00 1.82
1643 1785 3.118519 GCTACTCCCTCCGTTCCAAATTA 60.119 47.826 0.00 0.00 0.00 1.40
1644 1786 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
1645 1787 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
1646 1788 3.055312 ACTCCCTCCGTTCCAAATTACTC 60.055 47.826 0.00 0.00 0.00 2.59
1647 1789 2.093869 TCCCTCCGTTCCAAATTACTCG 60.094 50.000 0.00 0.00 0.00 4.18
1648 1790 2.354403 CCCTCCGTTCCAAATTACTCGT 60.354 50.000 0.00 0.00 0.00 4.18
1649 1791 2.928116 CCTCCGTTCCAAATTACTCGTC 59.072 50.000 0.00 0.00 0.00 4.20
1650 1792 2.597305 CTCCGTTCCAAATTACTCGTCG 59.403 50.000 0.00 0.00 0.00 5.12
1651 1793 2.030007 TCCGTTCCAAATTACTCGTCGT 60.030 45.455 0.00 0.00 0.00 4.34
1652 1794 2.091588 CCGTTCCAAATTACTCGTCGTG 59.908 50.000 0.00 0.00 0.00 4.35
1653 1795 2.091588 CGTTCCAAATTACTCGTCGTGG 59.908 50.000 0.00 0.00 0.00 4.94
1654 1796 3.062042 GTTCCAAATTACTCGTCGTGGT 58.938 45.455 0.00 0.00 0.00 4.16
1655 1797 3.389925 TCCAAATTACTCGTCGTGGTT 57.610 42.857 0.00 0.00 0.00 3.67
1656 1798 3.731089 TCCAAATTACTCGTCGTGGTTT 58.269 40.909 0.00 0.00 0.00 3.27
1657 1799 4.128643 TCCAAATTACTCGTCGTGGTTTT 58.871 39.130 0.00 0.00 0.00 2.43
1658 1800 5.295950 TCCAAATTACTCGTCGTGGTTTTA 58.704 37.500 0.00 0.00 0.00 1.52
1659 1801 5.406175 TCCAAATTACTCGTCGTGGTTTTAG 59.594 40.000 0.00 0.00 0.00 1.85
1660 1802 5.178067 CCAAATTACTCGTCGTGGTTTTAGT 59.822 40.000 0.00 0.00 0.00 2.24
1661 1803 6.293027 CCAAATTACTCGTCGTGGTTTTAGTT 60.293 38.462 0.00 0.00 0.00 2.24
1662 1804 6.457851 AATTACTCGTCGTGGTTTTAGTTC 57.542 37.500 0.00 0.00 0.00 3.01
1663 1805 3.441496 ACTCGTCGTGGTTTTAGTTCA 57.559 42.857 0.00 0.00 0.00 3.18
1664 1806 3.784338 ACTCGTCGTGGTTTTAGTTCAA 58.216 40.909 0.00 0.00 0.00 2.69
1665 1807 4.183101 ACTCGTCGTGGTTTTAGTTCAAA 58.817 39.130 0.00 0.00 0.00 2.69
1666 1808 4.812626 ACTCGTCGTGGTTTTAGTTCAAAT 59.187 37.500 0.00 0.00 0.00 2.32
1667 1809 5.295045 ACTCGTCGTGGTTTTAGTTCAAATT 59.705 36.000 0.00 0.00 0.00 1.82
1668 1810 6.121613 TCGTCGTGGTTTTAGTTCAAATTT 57.878 33.333 0.00 0.00 0.00 1.82
1669 1811 5.966503 TCGTCGTGGTTTTAGTTCAAATTTG 59.033 36.000 12.15 12.15 0.00 2.32
1670 1812 5.966503 CGTCGTGGTTTTAGTTCAAATTTGA 59.033 36.000 16.91 16.91 34.92 2.69
1671 1813 6.469595 CGTCGTGGTTTTAGTTCAAATTTGAA 59.530 34.615 26.01 26.01 44.31 2.69
1685 1827 8.477419 TTCAAATTTGAAACAGAGGGAGTATT 57.523 30.769 27.22 0.00 43.62 1.89
1686 1828 7.885297 TCAAATTTGAAACAGAGGGAGTATTG 58.115 34.615 18.45 0.00 33.55 1.90
1687 1829 6.840780 AATTTGAAACAGAGGGAGTATTGG 57.159 37.500 0.00 0.00 0.00 3.16
1688 1830 4.301072 TTGAAACAGAGGGAGTATTGGG 57.699 45.455 0.00 0.00 0.00 4.12
1689 1831 3.526899 TGAAACAGAGGGAGTATTGGGA 58.473 45.455 0.00 0.00 0.00 4.37
1690 1832 3.519510 TGAAACAGAGGGAGTATTGGGAG 59.480 47.826 0.00 0.00 0.00 4.30
1691 1833 2.950990 ACAGAGGGAGTATTGGGAGT 57.049 50.000 0.00 0.00 0.00 3.85
1692 1834 4.348020 AACAGAGGGAGTATTGGGAGTA 57.652 45.455 0.00 0.00 0.00 2.59
1693 1835 4.348020 ACAGAGGGAGTATTGGGAGTAA 57.652 45.455 0.00 0.00 0.00 2.24
1694 1836 4.290942 ACAGAGGGAGTATTGGGAGTAAG 58.709 47.826 0.00 0.00 0.00 2.34
1695 1837 4.016479 ACAGAGGGAGTATTGGGAGTAAGA 60.016 45.833 0.00 0.00 0.00 2.10
1696 1838 4.962995 CAGAGGGAGTATTGGGAGTAAGAA 59.037 45.833 0.00 0.00 0.00 2.52
1697 1839 5.604650 CAGAGGGAGTATTGGGAGTAAGAAT 59.395 44.000 0.00 0.00 0.00 2.40
1698 1840 6.100424 CAGAGGGAGTATTGGGAGTAAGAATT 59.900 42.308 0.00 0.00 0.00 2.17
1699 1841 7.290248 CAGAGGGAGTATTGGGAGTAAGAATTA 59.710 40.741 0.00 0.00 0.00 1.40
1700 1842 7.849904 AGAGGGAGTATTGGGAGTAAGAATTAA 59.150 37.037 0.00 0.00 28.70 1.40
1701 1843 8.401955 AGGGAGTATTGGGAGTAAGAATTAAA 57.598 34.615 0.00 0.00 28.70 1.52
1702 1844 8.842764 AGGGAGTATTGGGAGTAAGAATTAAAA 58.157 33.333 0.00 0.00 28.70 1.52
1703 1845 8.900781 GGGAGTATTGGGAGTAAGAATTAAAAC 58.099 37.037 0.00 0.00 28.70 2.43
1704 1846 8.900781 GGAGTATTGGGAGTAAGAATTAAAACC 58.099 37.037 0.00 0.00 28.70 3.27
1705 1847 9.457436 GAGTATTGGGAGTAAGAATTAAAACCA 57.543 33.333 0.00 0.00 28.70 3.67
1706 1848 9.239551 AGTATTGGGAGTAAGAATTAAAACCAC 57.760 33.333 0.00 0.00 31.26 4.16
1707 1849 9.016438 GTATTGGGAGTAAGAATTAAAACCACA 57.984 33.333 0.00 0.00 31.26 4.17
1708 1850 7.519032 TTGGGAGTAAGAATTAAAACCACAG 57.481 36.000 0.00 0.00 31.26 3.66
1724 1866 1.341209 CACAGTGGTACAGACTGAGCA 59.659 52.381 23.90 6.11 43.04 4.26
1762 1904 3.319904 CCGGCGAGGAATTAAGCG 58.680 61.111 9.30 0.00 45.00 4.68
1763 1905 1.520787 CCGGCGAGGAATTAAGCGT 60.521 57.895 9.30 0.00 45.00 5.07
1764 1906 0.249155 CCGGCGAGGAATTAAGCGTA 60.249 55.000 9.30 0.00 45.00 4.42
1765 1907 1.129326 CGGCGAGGAATTAAGCGTAG 58.871 55.000 0.00 0.00 0.00 3.51
1781 1924 1.739466 CGTAGTCGCTGGTGGTAGTAA 59.261 52.381 0.00 0.00 0.00 2.24
1782 1925 2.357009 CGTAGTCGCTGGTGGTAGTAAT 59.643 50.000 0.00 0.00 0.00 1.89
1783 1926 3.561310 CGTAGTCGCTGGTGGTAGTAATA 59.439 47.826 0.00 0.00 0.00 0.98
1784 1927 4.035558 CGTAGTCGCTGGTGGTAGTAATAA 59.964 45.833 0.00 0.00 0.00 1.40
1785 1928 4.650754 AGTCGCTGGTGGTAGTAATAAG 57.349 45.455 0.00 0.00 0.00 1.73
1786 1929 4.275810 AGTCGCTGGTGGTAGTAATAAGA 58.724 43.478 0.00 0.00 0.00 2.10
1787 1930 4.708421 AGTCGCTGGTGGTAGTAATAAGAA 59.292 41.667 0.00 0.00 0.00 2.52
1788 1931 4.802563 GTCGCTGGTGGTAGTAATAAGAAC 59.197 45.833 0.00 0.00 0.00 3.01
1820 1963 2.282958 ACCGAGACCGAGGCAAGA 60.283 61.111 0.00 0.00 38.22 3.02
1864 2007 3.888930 TGTTTCTGGTTGGGAGTTCATTC 59.111 43.478 0.00 0.00 0.00 2.67
1899 2042 3.188048 CGTACACGTCCTAGTATGGATCC 59.812 52.174 4.20 4.20 38.52 3.36
1908 2073 4.835056 TCCTAGTATGGATCCACTCATGTG 59.165 45.833 18.99 3.56 43.45 3.21
1912 2077 0.253894 TGGATCCACTCATGTGCCAG 59.746 55.000 11.44 0.00 42.54 4.85
1946 2111 0.859232 TCTCTGTTCAAAAGCGCGTC 59.141 50.000 8.43 0.00 0.00 5.19
2003 2168 8.211116 TCTCGAGCTAGCTAATTACATATACC 57.789 38.462 19.38 0.00 0.00 2.73
2032 2206 3.262151 TGTTGGACGGACAAATCTGGATA 59.738 43.478 0.00 0.00 35.26 2.59
2034 2208 4.771114 TGGACGGACAAATCTGGATATT 57.229 40.909 0.00 0.00 35.26 1.28
2207 2396 1.501169 TCACTTGTCGTGTCATGCAG 58.499 50.000 0.00 0.00 44.16 4.41
2214 2403 2.034053 TGTCGTGTCATGCAGCGATATA 59.966 45.455 8.15 0.00 34.83 0.86
2215 2404 3.245797 GTCGTGTCATGCAGCGATATAT 58.754 45.455 8.15 0.00 34.83 0.86
2216 2405 4.083003 TGTCGTGTCATGCAGCGATATATA 60.083 41.667 8.15 0.00 34.83 0.86
2217 2406 4.263209 GTCGTGTCATGCAGCGATATATAC 59.737 45.833 8.15 0.00 34.83 1.47
2218 2407 4.156008 TCGTGTCATGCAGCGATATATACT 59.844 41.667 0.00 0.00 0.00 2.12
2219 2408 4.497251 CGTGTCATGCAGCGATATATACTC 59.503 45.833 0.00 0.00 0.00 2.59
2220 2409 4.800993 GTGTCATGCAGCGATATATACTCC 59.199 45.833 0.00 0.00 0.00 3.85
2221 2410 4.142160 TGTCATGCAGCGATATATACTCCC 60.142 45.833 0.00 0.00 0.00 4.30
2222 2411 4.098654 GTCATGCAGCGATATATACTCCCT 59.901 45.833 0.00 0.00 0.00 4.20
2223 2412 4.339530 TCATGCAGCGATATATACTCCCTC 59.660 45.833 0.00 0.00 0.00 4.30
2224 2413 3.024547 TGCAGCGATATATACTCCCTCC 58.975 50.000 0.00 0.00 0.00 4.30
2225 2414 2.033550 GCAGCGATATATACTCCCTCCG 59.966 54.545 0.00 0.00 0.00 4.63
2226 2415 3.280295 CAGCGATATATACTCCCTCCGT 58.720 50.000 0.00 0.00 0.00 4.69
2227 2416 3.312973 CAGCGATATATACTCCCTCCGTC 59.687 52.174 0.00 0.00 0.00 4.79
2228 2417 2.617774 GCGATATATACTCCCTCCGTCC 59.382 54.545 0.00 0.00 0.00 4.79
2229 2418 3.882444 CGATATATACTCCCTCCGTCCA 58.118 50.000 0.00 0.00 0.00 4.02
2230 2419 3.878103 CGATATATACTCCCTCCGTCCAG 59.122 52.174 0.00 0.00 0.00 3.86
2231 2420 4.383880 CGATATATACTCCCTCCGTCCAGA 60.384 50.000 0.00 0.00 0.00 3.86
2232 2421 3.897657 ATATACTCCCTCCGTCCAGAA 57.102 47.619 0.00 0.00 0.00 3.02
2233 2422 2.544844 ATACTCCCTCCGTCCAGAAA 57.455 50.000 0.00 0.00 0.00 2.52
2234 2423 2.544844 TACTCCCTCCGTCCAGAAAT 57.455 50.000 0.00 0.00 0.00 2.17
2235 2424 2.544844 ACTCCCTCCGTCCAGAAATA 57.455 50.000 0.00 0.00 0.00 1.40
2236 2425 2.108970 ACTCCCTCCGTCCAGAAATAC 58.891 52.381 0.00 0.00 0.00 1.89
2237 2426 2.292323 ACTCCCTCCGTCCAGAAATACT 60.292 50.000 0.00 0.00 0.00 2.12
2238 2427 2.766828 CTCCCTCCGTCCAGAAATACTT 59.233 50.000 0.00 0.00 0.00 2.24
2239 2428 2.500098 TCCCTCCGTCCAGAAATACTTG 59.500 50.000 0.00 0.00 0.00 3.16
2240 2429 2.236395 CCCTCCGTCCAGAAATACTTGT 59.764 50.000 0.00 0.00 0.00 3.16
2241 2430 3.522553 CCTCCGTCCAGAAATACTTGTC 58.477 50.000 0.00 0.00 0.00 3.18
2242 2431 3.056107 CCTCCGTCCAGAAATACTTGTCA 60.056 47.826 0.00 0.00 0.00 3.58
2243 2432 4.383118 CCTCCGTCCAGAAATACTTGTCAT 60.383 45.833 0.00 0.00 0.00 3.06
2244 2433 5.160607 TCCGTCCAGAAATACTTGTCATT 57.839 39.130 0.00 0.00 0.00 2.57
2245 2434 6.288941 TCCGTCCAGAAATACTTGTCATTA 57.711 37.500 0.00 0.00 0.00 1.90
2246 2435 6.703319 TCCGTCCAGAAATACTTGTCATTAA 58.297 36.000 0.00 0.00 0.00 1.40
2247 2436 7.162761 TCCGTCCAGAAATACTTGTCATTAAA 58.837 34.615 0.00 0.00 0.00 1.52
2248 2437 7.662258 TCCGTCCAGAAATACTTGTCATTAAAA 59.338 33.333 0.00 0.00 0.00 1.52
2249 2438 8.458843 CCGTCCAGAAATACTTGTCATTAAAAT 58.541 33.333 0.00 0.00 0.00 1.82
2250 2439 9.277565 CGTCCAGAAATACTTGTCATTAAAATG 57.722 33.333 0.00 0.00 37.75 2.32
2251 2440 9.573133 GTCCAGAAATACTTGTCATTAAAATGG 57.427 33.333 3.00 0.00 37.03 3.16
2252 2441 9.527157 TCCAGAAATACTTGTCATTAAAATGGA 57.473 29.630 3.00 0.00 37.03 3.41
2314 2503 8.905660 TTTAATGATAAATATTTCCGGACGGA 57.094 30.769 1.83 9.76 43.52 4.69
2315 2504 8.542497 TTAATGATAAATATTTCCGGACGGAG 57.458 34.615 13.64 0.00 46.06 4.63
2316 2505 4.890088 TGATAAATATTTCCGGACGGAGG 58.110 43.478 13.64 0.00 46.06 4.30
2317 2506 2.632987 AAATATTTCCGGACGGAGGG 57.367 50.000 13.64 0.00 46.06 4.30
2318 2507 1.797320 AATATTTCCGGACGGAGGGA 58.203 50.000 13.64 4.95 46.06 4.20
2353 2542 3.087031 CCTCTTTGTGCTGACCATTGAT 58.913 45.455 0.00 0.00 0.00 2.57
2354 2543 3.119602 CCTCTTTGTGCTGACCATTGATG 60.120 47.826 0.00 0.00 0.00 3.07
2373 2562 2.657143 TGGGGTAGGTGACAACAAAAC 58.343 47.619 0.00 0.00 0.00 2.43
2380 2569 6.171213 GGTAGGTGACAACAAAACTAGCTAT 58.829 40.000 0.00 0.00 31.38 2.97
2394 2589 3.620428 CTATGCGTGCCGTCTGCG 61.620 66.667 0.00 0.00 45.60 5.18
2441 2650 2.227865 ACGCTTGGACATTAACGCAAAT 59.772 40.909 0.00 0.00 0.00 2.32
2443 2652 4.083217 ACGCTTGGACATTAACGCAAATAA 60.083 37.500 0.00 0.00 0.00 1.40
2505 2719 3.655481 GTGCAACTTCGAGGTGGG 58.345 61.111 0.00 0.00 32.34 4.61
2534 2748 0.598562 ACGTGACTAGTGCTGAGTGG 59.401 55.000 0.00 0.00 0.00 4.00
2535 2749 0.598562 CGTGACTAGTGCTGAGTGGT 59.401 55.000 0.00 0.00 0.00 4.16
2545 2759 1.448540 CTGAGTGGTGATGTCGCCC 60.449 63.158 9.93 2.26 45.66 6.13
2581 3314 2.894126 TGACAAAATGTGGCCGGTTATT 59.106 40.909 1.90 0.00 32.17 1.40
2621 3355 6.037830 ACCGATACCATTAGTGTGCAAATAAC 59.962 38.462 0.00 0.00 0.00 1.89
2665 3399 0.249238 GCACCACGCTAGAGATGGAG 60.249 60.000 17.40 12.42 36.94 3.86
2737 3472 0.605589 CCCCACGAGGTTGAGGTTTC 60.606 60.000 0.00 0.00 0.00 2.78
2747 3482 5.238650 CGAGGTTGAGGTTTCAATTTAGTGT 59.761 40.000 0.00 0.00 44.62 3.55
2754 3496 4.755123 AGGTTTCAATTTAGTGTGTCCTCG 59.245 41.667 0.00 0.00 0.00 4.63
2772 3514 1.798087 GTTTGTGATTACGCGGGGG 59.202 57.895 12.47 0.00 0.00 5.40
2821 3563 6.070424 ACCGGATATTTTTGTGTCCTCTTCTA 60.070 38.462 9.46 0.00 0.00 2.10
2827 3569 6.937436 TTTTTGTGTCCTCTTCTAGAAACC 57.063 37.500 6.63 0.00 0.00 3.27
2914 3670 1.151777 AGGTTCTTCACACACGCACG 61.152 55.000 0.00 0.00 0.00 5.34
2916 3672 1.811679 TTCTTCACACACGCACGCA 60.812 52.632 0.00 0.00 0.00 5.24
2917 3673 2.031044 TTCTTCACACACGCACGCAC 62.031 55.000 0.00 0.00 0.00 5.34
2918 3674 3.821462 CTTCACACACGCACGCACG 62.821 63.158 0.00 0.00 39.50 5.34
2954 3710 9.976511 ACATGCAGGATAATTAAAATTCATGAG 57.023 29.630 4.84 6.18 32.24 2.90
2992 3748 6.998968 TGCACATTCATAACATACACATCA 57.001 33.333 0.00 0.00 0.00 3.07
3013 3769 8.249638 ACATCAAGATATATTGATCTCTCCGTG 58.750 37.037 20.11 12.00 44.68 4.94
3054 3810 9.261180 CAATGAAAAGTGTCTACTAGAAAGTCA 57.739 33.333 0.00 0.00 35.69 3.41
3074 3830 7.545362 AGTCATCTAACGAATGAATTCTTGG 57.455 36.000 7.05 3.07 34.69 3.61
3076 3832 7.493971 AGTCATCTAACGAATGAATTCTTGGAG 59.506 37.037 7.05 0.00 34.69 3.86
3116 3872 6.530601 AAGTGGCCCTTTAACTATCCATAT 57.469 37.500 0.00 0.00 0.00 1.78
3180 3940 3.873952 GAGGTCGCTAGCATCAGATTTTT 59.126 43.478 16.45 0.00 0.00 1.94
3269 4030 5.835280 CCAGAATATAATGGTCAAAAGGGCT 59.165 40.000 0.00 0.00 0.00 5.19
3327 4088 3.244112 ACGAAGAGGTTGTCCGAAAGAAT 60.244 43.478 0.00 0.00 39.05 2.40
3331 4092 4.683832 AGAGGTTGTCCGAAAGAATATCG 58.316 43.478 0.00 0.00 39.92 2.92
3334 4095 3.930848 GGTTGTCCGAAAGAATATCGTGT 59.069 43.478 0.00 0.00 38.60 4.49
3336 4097 5.577945 GGTTGTCCGAAAGAATATCGTGTTA 59.422 40.000 0.00 0.00 38.60 2.41
3338 4099 5.957798 TGTCCGAAAGAATATCGTGTTAGT 58.042 37.500 0.00 0.00 38.60 2.24
3339 4100 6.392354 TGTCCGAAAGAATATCGTGTTAGTT 58.608 36.000 0.00 0.00 38.60 2.24
3340 4101 6.869913 TGTCCGAAAGAATATCGTGTTAGTTT 59.130 34.615 0.00 0.00 38.60 2.66
3341 4102 7.148705 TGTCCGAAAGAATATCGTGTTAGTTTG 60.149 37.037 0.00 0.00 38.60 2.93
3342 4103 5.957796 CCGAAAGAATATCGTGTTAGTTTGC 59.042 40.000 0.00 0.00 38.60 3.68
3343 4104 6.183360 CCGAAAGAATATCGTGTTAGTTTGCT 60.183 38.462 0.00 0.00 38.60 3.91
3344 4105 6.895040 CGAAAGAATATCGTGTTAGTTTGCTC 59.105 38.462 0.00 0.00 35.64 4.26
3354 4115 5.205565 GTGTTAGTTTGCTCTTTGCTGTAC 58.794 41.667 0.00 0.00 43.37 2.90
3367 4128 5.633601 TCTTTGCTGTACGATTCAGTAAGTG 59.366 40.000 0.00 0.00 38.35 3.16
3373 4136 7.488150 TGCTGTACGATTCAGTAAGTGATAAAG 59.512 37.037 0.00 0.00 34.17 1.85
3377 4140 7.829378 ACGATTCAGTAAGTGATAAAGTTCC 57.171 36.000 0.00 0.00 34.17 3.62
3378 4141 7.383687 ACGATTCAGTAAGTGATAAAGTTCCA 58.616 34.615 0.00 0.00 34.17 3.53
3425 4189 2.128771 ATACCATGCTTCACCCACAC 57.871 50.000 0.00 0.00 0.00 3.82
3482 4246 7.246311 AGATAAACAGAAAGAATCGCATGTTG 58.754 34.615 0.00 0.00 31.67 3.33
3490 4256 6.308766 AGAAAGAATCGCATGTTGTTTATTGC 59.691 34.615 0.00 0.00 0.00 3.56
3558 4330 4.022849 ACTGCTTTTGTTTCTAGACATGCC 60.023 41.667 0.00 0.00 0.00 4.40
3561 4333 2.177394 TTGTTTCTAGACATGCCGCA 57.823 45.000 0.00 0.00 0.00 5.69
3574 4346 1.890876 TGCCGCATAGTTTGACTGTT 58.109 45.000 0.00 0.00 0.00 3.16
3591 4363 5.300034 TGACTGTTGAATTCATGCTTTGACT 59.700 36.000 9.40 0.00 32.84 3.41
3595 4367 9.013229 ACTGTTGAATTCATGCTTTGACTATAA 57.987 29.630 9.40 0.00 32.84 0.98
3606 4378 7.633018 TGCTTTGACTATAAATCCCTCCTAT 57.367 36.000 0.00 0.00 0.00 2.57
3646 4418 8.210265 TGGCTACAAAATCATAGATCATACACA 58.790 33.333 0.00 0.00 0.00 3.72
3763 4536 6.585416 TGGGTAAGTATATTTTTCGTCCCTC 58.415 40.000 0.00 0.00 33.15 4.30
3764 4537 6.384886 TGGGTAAGTATATTTTTCGTCCCTCT 59.615 38.462 0.00 0.00 33.15 3.69
3772 4545 4.516365 TTTTTCGTCCCTCTACTCTCAC 57.484 45.455 0.00 0.00 0.00 3.51
3773 4546 2.873094 TTCGTCCCTCTACTCTCACA 57.127 50.000 0.00 0.00 0.00 3.58
3784 4557 7.455008 TCCCTCTACTCTCACAAAAGTTTAGAT 59.545 37.037 0.00 0.00 0.00 1.98
3793 4566 5.077424 CACAAAAGTTTAGATAACGTCCGC 58.923 41.667 0.00 0.00 0.00 5.54
3808 4581 0.829602 TCCGCCAAATCCAAAGCCAA 60.830 50.000 0.00 0.00 0.00 4.52
3809 4582 0.034616 CCGCCAAATCCAAAGCCAAA 59.965 50.000 0.00 0.00 0.00 3.28
3892 5344 5.280113 GGCCAATATTAGTCAATACCGGGTA 60.280 44.000 9.76 9.76 29.44 3.69
3900 5352 3.118884 AGTCAATACCGGGTACATGTCAC 60.119 47.826 9.50 7.18 0.00 3.67
3903 5355 1.249469 TACCGGGTACATGTCACGCA 61.249 55.000 6.32 0.00 0.00 5.24
3933 5392 4.204799 AGTTATTGGGCCGAAACTTATCC 58.795 43.478 3.59 0.00 0.00 2.59
3965 5427 5.319043 AGTTGAGGGATTGAGTTTTGGTA 57.681 39.130 0.00 0.00 0.00 3.25
3968 5430 6.043938 AGTTGAGGGATTGAGTTTTGGTAGTA 59.956 38.462 0.00 0.00 0.00 1.82
3979 5441 7.458397 TGAGTTTTGGTAGTATTGGAGTTGAT 58.542 34.615 0.00 0.00 0.00 2.57
3983 5445 6.575244 TTGGTAGTATTGGAGTTGATGGAT 57.425 37.500 0.00 0.00 0.00 3.41
3991 5453 6.956202 ATTGGAGTTGATGGATGATTTCTC 57.044 37.500 0.00 0.00 0.00 2.87
3994 5456 5.045359 TGGAGTTGATGGATGATTTCTCACT 60.045 40.000 0.00 0.00 33.22 3.41
4000 5462 6.714278 TGATGGATGATTTCTCACTTTCTCA 58.286 36.000 0.00 0.00 33.22 3.27
4014 5476 4.457257 CACTTTCTCAAGAATTCAGGGACC 59.543 45.833 8.44 0.00 33.54 4.46
4083 5564 8.154203 TGCCCGATGAGTAAGATATAAATTGAA 58.846 33.333 0.00 0.00 0.00 2.69
4095 5576 0.819582 AAATTGAAGATGCGCCCCAG 59.180 50.000 4.18 0.00 0.00 4.45
4099 5580 1.817099 GAAGATGCGCCCCAGTCTG 60.817 63.158 4.18 0.00 0.00 3.51
4100 5581 2.244117 GAAGATGCGCCCCAGTCTGA 62.244 60.000 4.18 0.00 0.00 3.27
4135 5616 9.161629 AGTGAACCAAAATTAACAAAAAGAAGG 57.838 29.630 0.00 0.00 0.00 3.46
4184 5666 6.174720 TCCAGGTGGATATGATGTTTACTC 57.825 41.667 0.00 0.00 39.78 2.59
4209 5699 4.244425 ACGGACAGTAGATGACATATGC 57.756 45.455 1.58 0.00 0.00 3.14
4233 5723 7.027686 CGATGTCGCTCAATGTAGTAAATAG 57.972 40.000 0.00 0.00 0.00 1.73
4236 5726 8.798748 ATGTCGCTCAATGTAGTAAATAGTAC 57.201 34.615 0.00 0.00 33.69 2.73
4237 5727 7.764331 TGTCGCTCAATGTAGTAAATAGTACA 58.236 34.615 9.83 9.83 43.82 2.90
4238 5728 7.913821 TGTCGCTCAATGTAGTAAATAGTACAG 59.086 37.037 12.31 2.67 43.17 2.74
4239 5729 7.914346 GTCGCTCAATGTAGTAAATAGTACAGT 59.086 37.037 12.31 8.02 43.17 3.55
4240 5730 8.464404 TCGCTCAATGTAGTAAATAGTACAGTT 58.536 33.333 12.31 6.05 43.17 3.16
4241 5731 9.084164 CGCTCAATGTAGTAAATAGTACAGTTT 57.916 33.333 12.31 0.00 43.17 2.66
4331 5821 5.062934 GGAAACAAAGAAGGAAAACGTTTGG 59.937 40.000 15.46 0.00 33.33 3.28
4337 5827 5.592104 AGAAGGAAAACGTTTGGAAATGT 57.408 34.783 15.46 0.00 39.69 2.71
4357 5847 5.839262 TGTTTCTTGATCGACACATGTAC 57.161 39.130 0.00 0.00 0.00 2.90
4359 5849 4.428615 TTCTTGATCGACACATGTACGA 57.571 40.909 22.72 22.72 40.18 3.43
4360 5850 3.754955 TCTTGATCGACACATGTACGAC 58.245 45.455 22.87 17.81 38.79 4.34
4366 5856 3.644823 TCGACACATGTACGACAATGTT 58.355 40.909 18.70 0.00 33.38 2.71
4536 6028 1.000646 GACGACTCCCCAGTCCTCT 60.001 63.158 0.00 0.00 45.81 3.69
4543 6035 2.266279 CTCCCCAGTCCTCTAAAACCA 58.734 52.381 0.00 0.00 0.00 3.67
4833 6325 3.869272 GGAGACATGCAAGGCGCG 61.869 66.667 0.00 0.00 46.97 6.86
4834 6326 3.869272 GAGACATGCAAGGCGCGG 61.869 66.667 8.83 0.00 46.97 6.46
5196 6694 5.390613 CCATTCCATCAACGTTGTTCTTAC 58.609 41.667 26.47 0.00 0.00 2.34
5198 6696 6.434596 CATTCCATCAACGTTGTTCTTACAA 58.565 36.000 26.47 12.21 41.82 2.41
5200 6698 5.812652 TCCATCAACGTTGTTCTTACAAAC 58.187 37.500 26.47 0.00 45.33 2.93
5263 6776 4.585879 AGCAATGTACCCGTGTAAGAAAT 58.414 39.130 0.00 0.00 0.00 2.17
5264 6777 5.736813 AGCAATGTACCCGTGTAAGAAATA 58.263 37.500 0.00 0.00 0.00 1.40
5295 6808 0.459759 GCAGGTACGCTGGGAAGTAC 60.460 60.000 11.72 0.00 41.64 2.73
5296 6809 1.183549 CAGGTACGCTGGGAAGTACT 58.816 55.000 0.00 0.00 41.94 2.73
5297 6810 1.135083 CAGGTACGCTGGGAAGTACTG 60.135 57.143 0.00 0.00 41.94 2.74
5298 6811 0.893447 GGTACGCTGGGAAGTACTGT 59.107 55.000 0.00 0.00 41.94 3.55
5299 6812 2.094675 GGTACGCTGGGAAGTACTGTA 58.905 52.381 0.00 0.00 41.94 2.74
5300 6813 2.493278 GGTACGCTGGGAAGTACTGTAA 59.507 50.000 0.00 0.00 41.94 2.41
5305 6818 3.243771 CGCTGGGAAGTACTGTAATAGGG 60.244 52.174 0.00 0.00 0.00 3.53
5343 6915 2.493675 CTCTCCTCCTTGTCGTTGATCA 59.506 50.000 0.00 0.00 0.00 2.92
5359 6931 8.110612 GTCGTTGATCAGATTACACACATAAAG 58.889 37.037 0.00 0.00 0.00 1.85
5466 7038 7.989741 CCTGAGGTTCTGTCTTGAAATACATAT 59.010 37.037 0.00 0.00 0.00 1.78
5496 7075 6.642733 TCTTTTCTCCTCCATTTATGTCCT 57.357 37.500 0.00 0.00 0.00 3.85
5507 7086 5.538053 TCCATTTATGTCCTGTTGCAAGAAA 59.462 36.000 0.00 0.00 0.00 2.52
5518 7097 9.595823 GTCCTGTTGCAAGAAATATAGTACTAA 57.404 33.333 6.70 0.00 0.00 2.24
5522 7101 9.595823 TGTTGCAAGAAATATAGTACTAACTCC 57.404 33.333 6.70 0.00 37.15 3.85
5538 7117 6.994221 ACTAACTCCGATCCATAATAAGTGG 58.006 40.000 0.00 0.00 38.11 4.00
5548 7127 4.953579 TCCATAATAAGTGGGGCAGTTTTC 59.046 41.667 0.00 0.00 37.34 2.29
5551 7130 6.295575 CCATAATAAGTGGGGCAGTTTTCAAA 60.296 38.462 0.00 0.00 32.98 2.69
5552 7131 5.622346 AATAAGTGGGGCAGTTTTCAAAA 57.378 34.783 0.00 0.00 0.00 2.44
5578 7157 6.566197 AAAAATTGTGGCAGTTTTGAACAA 57.434 29.167 6.10 0.00 34.45 2.83
5579 7158 6.566197 AAAATTGTGGCAGTTTTGAACAAA 57.434 29.167 0.00 0.00 36.57 2.83
5580 7159 5.544136 AATTGTGGCAGTTTTGAACAAAC 57.456 34.783 0.00 0.00 36.57 2.93
5619 7198 3.954258 GTCAGTTATTTTGGATGGGAGGG 59.046 47.826 0.00 0.00 0.00 4.30
5621 7200 4.079787 TCAGTTATTTTGGATGGGAGGGAG 60.080 45.833 0.00 0.00 0.00 4.30
5671 7250 3.819564 AACCTTGAAAGTGAAAAGGCC 57.180 42.857 0.00 0.00 43.62 5.19
5675 7254 0.825840 TGAAAGTGAAAAGGCCCCCG 60.826 55.000 0.00 0.00 0.00 5.73
5678 7257 3.373565 GTGAAAAGGCCCCCGCTG 61.374 66.667 0.00 0.00 34.44 5.18
5702 7282 5.980715 GCTCGTAGGAGGAGAAGAATAAAAG 59.019 44.000 14.00 0.00 40.80 2.27
5744 7324 6.355747 AGGAGGAGATGCATAAAAGAAGAAG 58.644 40.000 0.00 0.00 0.00 2.85
5745 7325 6.157645 AGGAGGAGATGCATAAAAGAAGAAGA 59.842 38.462 0.00 0.00 0.00 2.87
5746 7326 6.825721 GGAGGAGATGCATAAAAGAAGAAGAA 59.174 38.462 0.00 0.00 0.00 2.52
5752 7332 9.294614 AGATGCATAAAAGAAGAAGAAACTCTT 57.705 29.630 0.00 0.00 39.87 2.85
5762 7342 5.146010 AGAAGAAACTCTTGTAGGAGCAG 57.854 43.478 0.00 0.00 36.73 4.24
5769 7349 2.230994 CTTGTAGGAGCAGGCGAGCA 62.231 60.000 7.67 0.00 36.85 4.26
5793 7373 1.134175 GTCTGAGACTGTAGAGGCTGC 59.866 57.143 0.00 0.00 37.88 5.25
5812 7392 1.798813 GCGGCCTATTTAGACCATTCG 59.201 52.381 0.00 0.00 0.00 3.34
5826 7406 1.670295 CCATTCGAACCGATGATGCAA 59.330 47.619 0.00 0.00 35.23 4.08
5843 7423 2.365617 TGCAAAATAGGGCGGTCAAAAA 59.634 40.909 0.00 0.00 0.00 1.94
5873 7453 3.515901 GGCAGGAGAGAGAAGGTTTTAGA 59.484 47.826 0.00 0.00 0.00 2.10
5882 7462 6.722129 AGAGAGAAGGTTTTAGAGCAGTAGAA 59.278 38.462 0.00 0.00 0.00 2.10
5888 7473 9.613957 GAAGGTTTTAGAGCAGTAGAATTTTTC 57.386 33.333 0.00 0.00 0.00 2.29
5912 7497 6.239908 TGCCGTAGCATATGATGTAAAATG 57.760 37.500 6.97 0.00 46.52 2.32
5953 7538 8.476447 ACATGGTCATTGCATATTTTGACATTA 58.524 29.630 0.00 3.77 40.14 1.90
5954 7539 8.757789 CATGGTCATTGCATATTTTGACATTAC 58.242 33.333 12.96 0.00 40.14 1.89
5958 7543 8.523464 GTCATTGCATATTTTGACATTACGAAC 58.477 33.333 0.00 0.00 38.63 3.95
5977 7562 5.984926 ACGAACTACCGAATGTTCAAACTTA 59.015 36.000 12.31 0.00 41.67 2.24
5980 7565 7.319615 CGAACTACCGAATGTTCAAACTTAAAC 59.680 37.037 12.31 0.00 41.67 2.01
5985 7570 7.657336 ACCGAATGTTCAAACTTAAACATGAT 58.343 30.769 0.00 0.00 43.45 2.45
5986 7571 8.788806 ACCGAATGTTCAAACTTAAACATGATA 58.211 29.630 0.00 0.00 43.45 2.15
5987 7572 9.277565 CCGAATGTTCAAACTTAAACATGATAG 57.722 33.333 0.00 0.00 43.45 2.08
5992 7577 9.554395 TGTTCAAACTTAAACATGATAGACTCA 57.446 29.630 0.00 0.00 38.53 3.41
5993 7578 9.813080 GTTCAAACTTAAACATGATAGACTCAC 57.187 33.333 0.00 0.00 36.48 3.51
5994 7579 9.778741 TTCAAACTTAAACATGATAGACTCACT 57.221 29.630 0.00 0.00 36.48 3.41
5997 7582 9.877178 AAACTTAAACATGATAGACTCACTAGG 57.123 33.333 0.00 0.00 36.48 3.02
5999 7584 9.256228 ACTTAAACATGATAGACTCACTAGGAA 57.744 33.333 0.00 0.00 36.48 3.36
6001 7586 6.723298 AACATGATAGACTCACTAGGAAGG 57.277 41.667 0.00 0.00 36.48 3.46
6023 7612 6.442952 AGGTACTACGATAGACACTACTACG 58.557 44.000 0.00 0.00 36.02 3.51
6025 7614 5.521906 ACTACGATAGACACTACTACGGA 57.478 43.478 0.00 0.00 41.38 4.69
6048 7637 2.746472 GCACTACTTGTCATCATCCCCC 60.746 54.545 0.00 0.00 0.00 5.40
6049 7638 1.762957 ACTACTTGTCATCATCCCCCG 59.237 52.381 0.00 0.00 0.00 5.73
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
8 9 2.234908 AGTTCCTGGAAGATTCAGTCGG 59.765 50.000 9.92 0.00 34.07 4.79
36 37 0.671251 GACCCATCTCTCGGCTACAG 59.329 60.000 0.00 0.00 0.00 2.74
77 78 2.470999 CGCCACAAGCACAAACATAAAC 59.529 45.455 0.00 0.00 44.04 2.01
78 79 2.736978 CGCCACAAGCACAAACATAAA 58.263 42.857 0.00 0.00 44.04 1.40
79 80 1.601663 GCGCCACAAGCACAAACATAA 60.602 47.619 0.00 0.00 44.04 1.90
80 81 0.039617 GCGCCACAAGCACAAACATA 60.040 50.000 0.00 0.00 44.04 2.29
81 82 1.300080 GCGCCACAAGCACAAACAT 60.300 52.632 0.00 0.00 44.04 2.71
82 83 2.103934 GCGCCACAAGCACAAACA 59.896 55.556 0.00 0.00 44.04 2.83
132 133 9.536510 ACTATCCTTCTAGTCTTAACTGAACTT 57.463 33.333 0.00 0.00 36.92 2.66
133 134 8.962679 CACTATCCTTCTAGTCTTAACTGAACT 58.037 37.037 0.00 0.00 36.92 3.01
134 135 7.703197 GCACTATCCTTCTAGTCTTAACTGAAC 59.297 40.741 0.00 0.00 36.92 3.18
135 136 7.616150 AGCACTATCCTTCTAGTCTTAACTGAA 59.384 37.037 0.00 0.00 36.92 3.02
137 138 7.341445 AGCACTATCCTTCTAGTCTTAACTG 57.659 40.000 0.00 0.00 36.92 3.16
138 139 8.053963 TGTAGCACTATCCTTCTAGTCTTAACT 58.946 37.037 0.00 0.00 39.66 2.24
139 140 8.223177 TGTAGCACTATCCTTCTAGTCTTAAC 57.777 38.462 0.00 0.00 29.41 2.01
140 141 8.998277 ATGTAGCACTATCCTTCTAGTCTTAA 57.002 34.615 0.00 0.00 29.41 1.85
141 142 9.504708 GTATGTAGCACTATCCTTCTAGTCTTA 57.495 37.037 0.00 0.00 29.41 2.10
142 143 7.999545 TGTATGTAGCACTATCCTTCTAGTCTT 59.000 37.037 0.00 0.00 29.41 3.01
157 158 3.131396 GCCACCTGTATGTATGTAGCAC 58.869 50.000 0.00 0.00 0.00 4.40
158 159 2.223947 CGCCACCTGTATGTATGTAGCA 60.224 50.000 0.00 0.00 0.00 3.49
159 160 2.404215 CGCCACCTGTATGTATGTAGC 58.596 52.381 0.00 0.00 0.00 3.58
160 161 2.288825 CCCGCCACCTGTATGTATGTAG 60.289 54.545 0.00 0.00 0.00 2.74
218 219 2.969238 CTGCATCCGTCCATCGCC 60.969 66.667 0.00 0.00 38.35 5.54
219 220 3.643978 GCTGCATCCGTCCATCGC 61.644 66.667 0.00 0.00 38.35 4.58
241 242 3.564027 CGATTCGGTGGCGGCTTC 61.564 66.667 11.43 3.19 0.00 3.86
356 357 0.107361 ATGTCGGGACCGGAATTTCC 60.107 55.000 9.46 3.83 40.25 3.13
424 430 3.739613 GGTGGGGAGGGGCGAATT 61.740 66.667 0.00 0.00 0.00 2.17
446 452 3.490759 GACGTGTGCATGGAGGCG 61.491 66.667 0.00 8.42 36.28 5.52
506 512 2.207229 CCACTGTGGACCAGGACGA 61.207 63.158 22.33 0.00 46.06 4.20
577 583 2.428530 CCAAATAAGAAGCTTCCCCTGC 59.571 50.000 22.81 0.00 0.00 4.85
578 584 3.696548 GTCCAAATAAGAAGCTTCCCCTG 59.303 47.826 22.81 12.56 0.00 4.45
610 616 2.551270 GTTTCACTGCGTGCTCGG 59.449 61.111 10.52 0.00 37.56 4.63
621 636 0.536460 TTTCGGGGCTCTGGTTTCAC 60.536 55.000 0.00 0.00 0.00 3.18
664 700 4.167359 GCGAGAGACAGAGCGCGA 62.167 66.667 12.10 0.00 40.06 5.87
680 729 1.404315 CGGAGATATAAAGGCCGGAGC 60.404 57.143 5.05 0.00 38.40 4.70
727 788 1.524165 GCGACGGCTCTCCTCTCTA 60.524 63.158 0.00 0.00 35.83 2.43
741 802 3.712881 GTCTGTGGTTGCCGCGAC 61.713 66.667 8.23 0.00 36.72 5.19
897 958 0.313672 ATCGATCGAGAAGCAGAGGC 59.686 55.000 23.84 0.00 41.61 4.70
946 1027 8.229605 TCCTCTACCTAATAATAAGCTGGTGTA 58.770 37.037 0.00 0.00 0.00 2.90
947 1028 7.073854 TCCTCTACCTAATAATAAGCTGGTGT 58.926 38.462 0.00 0.00 0.00 4.16
948 1029 7.540474 TCCTCTACCTAATAATAAGCTGGTG 57.460 40.000 0.00 0.00 0.00 4.17
950 1031 9.041354 AGATTCCTCTACCTAATAATAAGCTGG 57.959 37.037 0.00 0.00 0.00 4.85
952 1033 9.608718 ACAGATTCCTCTACCTAATAATAAGCT 57.391 33.333 0.00 0.00 0.00 3.74
958 1039 9.144298 CACCTAACAGATTCCTCTACCTAATAA 57.856 37.037 0.00 0.00 0.00 1.40
971 1052 4.511826 CCGGCTTAATCACCTAACAGATTC 59.488 45.833 0.00 0.00 0.00 2.52
972 1053 4.451900 CCGGCTTAATCACCTAACAGATT 58.548 43.478 0.00 0.00 0.00 2.40
1030 1123 2.669569 CGCACCACCACCCTTCTG 60.670 66.667 0.00 0.00 0.00 3.02
1033 1126 4.579384 CACCGCACCACCACCCTT 62.579 66.667 0.00 0.00 0.00 3.95
1197 1299 2.669569 TGCTTGAAGTGGAGCGGC 60.670 61.111 0.00 0.00 41.75 6.53
1263 1365 0.784495 AGTGTGTCTGGAGGAGGGTA 59.216 55.000 0.00 0.00 0.00 3.69
1275 1379 5.233988 AGTATTGCAAAGAGAGAGTGTGTC 58.766 41.667 1.71 0.00 0.00 3.67
1282 1386 5.890985 AGAGCTAGAGTATTGCAAAGAGAGA 59.109 40.000 1.71 0.00 31.38 3.10
1302 1406 6.317391 AGTGATTAATTTAGTGAAGGCAGAGC 59.683 38.462 0.00 0.00 0.00 4.09
1352 1462 2.613133 ACGGATACTCTACTCAAGTCGC 59.387 50.000 0.00 0.00 0.00 5.19
1449 1591 2.353357 TGGATCCATCACTTGCATCC 57.647 50.000 11.44 0.00 34.64 3.51
1504 1646 1.659954 GCTGCCGAGCGTATCTCAG 60.660 63.158 0.00 0.00 41.98 3.35
1561 1703 2.135933 AGAACAAAAGCGAGAAGGACG 58.864 47.619 0.00 0.00 0.00 4.79
1570 1712 0.882927 TCGTGGGGAGAACAAAAGCG 60.883 55.000 0.00 0.00 0.00 4.68
1584 1726 2.353889 AGTACGCACTAGTATGTCGTGG 59.646 50.000 16.63 0.00 35.21 4.94
1614 1756 0.315568 CGGAGGGAGTAGCATGCTAC 59.684 60.000 39.13 39.13 46.70 3.58
1617 1759 0.530870 GAACGGAGGGAGTAGCATGC 60.531 60.000 10.51 10.51 0.00 4.06
1618 1760 0.105039 GGAACGGAGGGAGTAGCATG 59.895 60.000 0.00 0.00 0.00 4.06
1620 1762 0.543410 TTGGAACGGAGGGAGTAGCA 60.543 55.000 0.00 0.00 0.00 3.49
1622 1764 3.629142 AATTTGGAACGGAGGGAGTAG 57.371 47.619 0.00 0.00 0.00 2.57
1623 1765 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
1624 1766 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
1626 1768 2.093869 CGAGTAATTTGGAACGGAGGGA 60.094 50.000 0.00 0.00 0.00 4.20
1628 1770 2.928116 GACGAGTAATTTGGAACGGAGG 59.072 50.000 0.00 0.00 0.00 4.30
1629 1771 2.597305 CGACGAGTAATTTGGAACGGAG 59.403 50.000 0.00 0.00 0.00 4.63
1630 1772 2.030007 ACGACGAGTAATTTGGAACGGA 60.030 45.455 0.00 0.00 0.00 4.69
1631 1773 2.091588 CACGACGAGTAATTTGGAACGG 59.908 50.000 0.00 0.00 0.00 4.44
1633 1775 3.062042 ACCACGACGAGTAATTTGGAAC 58.938 45.455 0.00 0.00 0.00 3.62
1634 1776 3.389925 ACCACGACGAGTAATTTGGAA 57.610 42.857 0.00 0.00 0.00 3.53
1635 1777 3.389925 AACCACGACGAGTAATTTGGA 57.610 42.857 0.00 0.00 0.00 3.53
1636 1778 4.477302 AAAACCACGACGAGTAATTTGG 57.523 40.909 0.00 0.00 0.00 3.28
1637 1779 6.219302 ACTAAAACCACGACGAGTAATTTG 57.781 37.500 0.00 2.39 0.00 2.32
1638 1780 6.479660 TGAACTAAAACCACGACGAGTAATTT 59.520 34.615 0.00 0.34 0.00 1.82
1639 1781 5.984926 TGAACTAAAACCACGACGAGTAATT 59.015 36.000 0.00 1.08 0.00 1.40
1640 1782 5.531634 TGAACTAAAACCACGACGAGTAAT 58.468 37.500 0.00 0.00 0.00 1.89
1641 1783 4.930963 TGAACTAAAACCACGACGAGTAA 58.069 39.130 0.00 0.00 0.00 2.24
1642 1784 4.566545 TGAACTAAAACCACGACGAGTA 57.433 40.909 0.00 0.00 0.00 2.59
1643 1785 3.441496 TGAACTAAAACCACGACGAGT 57.559 42.857 0.00 0.00 0.00 4.18
1644 1786 4.782252 TTTGAACTAAAACCACGACGAG 57.218 40.909 0.00 0.00 0.00 4.18
1645 1787 5.738118 AATTTGAACTAAAACCACGACGA 57.262 34.783 0.00 0.00 0.00 4.20
1646 1788 5.966503 TCAAATTTGAACTAAAACCACGACG 59.033 36.000 18.45 0.00 33.55 5.12
1647 1789 7.743520 TTCAAATTTGAACTAAAACCACGAC 57.256 32.000 26.01 0.00 41.88 4.34
1648 1790 7.813148 TGTTTCAAATTTGAACTAAAACCACGA 59.187 29.630 28.78 10.52 45.99 4.35
1649 1791 7.954447 TGTTTCAAATTTGAACTAAAACCACG 58.046 30.769 28.78 0.00 45.99 4.94
1650 1792 9.145865 TCTGTTTCAAATTTGAACTAAAACCAC 57.854 29.630 28.78 21.58 45.99 4.16
1651 1793 9.364989 CTCTGTTTCAAATTTGAACTAAAACCA 57.635 29.630 28.78 12.29 45.99 3.67
1652 1794 8.817100 CCTCTGTTTCAAATTTGAACTAAAACC 58.183 33.333 28.78 13.36 45.99 3.27
1653 1795 8.817100 CCCTCTGTTTCAAATTTGAACTAAAAC 58.183 33.333 28.78 23.35 45.99 2.43
1654 1796 8.754080 TCCCTCTGTTTCAAATTTGAACTAAAA 58.246 29.630 28.78 14.27 45.99 1.52
1655 1797 8.299990 TCCCTCTGTTTCAAATTTGAACTAAA 57.700 30.769 28.78 14.61 45.99 1.85
1656 1798 7.559897 ACTCCCTCTGTTTCAAATTTGAACTAA 59.440 33.333 28.78 14.94 45.99 2.24
1657 1799 7.060421 ACTCCCTCTGTTTCAAATTTGAACTA 58.940 34.615 28.78 19.98 45.99 2.24
1658 1800 5.893824 ACTCCCTCTGTTTCAAATTTGAACT 59.106 36.000 28.78 7.23 45.99 3.01
1659 1801 6.149129 ACTCCCTCTGTTTCAAATTTGAAC 57.851 37.500 28.78 22.87 45.99 3.18
1660 1802 8.359642 CAATACTCCCTCTGTTTCAAATTTGAA 58.640 33.333 26.01 26.01 44.78 2.69
1661 1803 7.039784 CCAATACTCCCTCTGTTTCAAATTTGA 60.040 37.037 16.91 16.91 34.92 2.69
1662 1804 7.092716 CCAATACTCCCTCTGTTTCAAATTTG 58.907 38.462 12.15 12.15 0.00 2.32
1663 1805 6.211384 CCCAATACTCCCTCTGTTTCAAATTT 59.789 38.462 0.00 0.00 0.00 1.82
1664 1806 5.716703 CCCAATACTCCCTCTGTTTCAAATT 59.283 40.000 0.00 0.00 0.00 1.82
1665 1807 5.015178 TCCCAATACTCCCTCTGTTTCAAAT 59.985 40.000 0.00 0.00 0.00 2.32
1666 1808 4.352595 TCCCAATACTCCCTCTGTTTCAAA 59.647 41.667 0.00 0.00 0.00 2.69
1667 1809 3.913799 TCCCAATACTCCCTCTGTTTCAA 59.086 43.478 0.00 0.00 0.00 2.69
1668 1810 3.519510 CTCCCAATACTCCCTCTGTTTCA 59.480 47.826 0.00 0.00 0.00 2.69
1669 1811 3.519913 ACTCCCAATACTCCCTCTGTTTC 59.480 47.826 0.00 0.00 0.00 2.78
1670 1812 3.532102 ACTCCCAATACTCCCTCTGTTT 58.468 45.455 0.00 0.00 0.00 2.83
1671 1813 3.207044 ACTCCCAATACTCCCTCTGTT 57.793 47.619 0.00 0.00 0.00 3.16
1672 1814 2.950990 ACTCCCAATACTCCCTCTGT 57.049 50.000 0.00 0.00 0.00 3.41
1673 1815 4.547671 TCTTACTCCCAATACTCCCTCTG 58.452 47.826 0.00 0.00 0.00 3.35
1674 1816 4.901785 TCTTACTCCCAATACTCCCTCT 57.098 45.455 0.00 0.00 0.00 3.69
1675 1817 6.502074 AATTCTTACTCCCAATACTCCCTC 57.498 41.667 0.00 0.00 0.00 4.30
1676 1818 8.401955 TTTAATTCTTACTCCCAATACTCCCT 57.598 34.615 0.00 0.00 0.00 4.20
1677 1819 8.900781 GTTTTAATTCTTACTCCCAATACTCCC 58.099 37.037 0.00 0.00 0.00 4.30
1678 1820 8.900781 GGTTTTAATTCTTACTCCCAATACTCC 58.099 37.037 0.00 0.00 0.00 3.85
1679 1821 9.457436 TGGTTTTAATTCTTACTCCCAATACTC 57.543 33.333 0.00 0.00 0.00 2.59
1680 1822 9.239551 GTGGTTTTAATTCTTACTCCCAATACT 57.760 33.333 0.00 0.00 0.00 2.12
1681 1823 9.016438 TGTGGTTTTAATTCTTACTCCCAATAC 57.984 33.333 0.00 0.00 0.00 1.89
1682 1824 9.238368 CTGTGGTTTTAATTCTTACTCCCAATA 57.762 33.333 0.00 0.00 0.00 1.90
1683 1825 7.728532 ACTGTGGTTTTAATTCTTACTCCCAAT 59.271 33.333 0.00 0.00 0.00 3.16
1684 1826 7.013846 CACTGTGGTTTTAATTCTTACTCCCAA 59.986 37.037 0.00 0.00 0.00 4.12
1685 1827 6.488683 CACTGTGGTTTTAATTCTTACTCCCA 59.511 38.462 0.00 0.00 0.00 4.37
1686 1828 6.072119 CCACTGTGGTTTTAATTCTTACTCCC 60.072 42.308 18.76 0.00 31.35 4.30
1687 1829 6.909909 CCACTGTGGTTTTAATTCTTACTCC 58.090 40.000 18.76 0.00 31.35 3.85
1703 1845 1.337260 GCTCAGTCTGTACCACTGTGG 60.337 57.143 24.80 24.80 45.02 4.17
1704 1846 1.341209 TGCTCAGTCTGTACCACTGTG 59.659 52.381 17.37 16.18 41.82 3.66
1705 1847 1.341531 GTGCTCAGTCTGTACCACTGT 59.658 52.381 17.37 0.00 41.82 3.55
1706 1848 1.341209 TGTGCTCAGTCTGTACCACTG 59.659 52.381 13.54 13.54 42.40 3.66
1707 1849 1.341531 GTGTGCTCAGTCTGTACCACT 59.658 52.381 15.77 0.00 0.00 4.00
1708 1850 1.068588 TGTGTGCTCAGTCTGTACCAC 59.931 52.381 0.00 6.55 0.00 4.16
1718 1860 3.046087 CACCGGCTGTGTGCTCAG 61.046 66.667 0.00 0.00 40.26 3.35
1724 1866 0.110486 AAAGAATCCACCGGCTGTGT 59.890 50.000 0.00 0.00 43.85 3.72
1761 1903 1.372582 TACTACCACCAGCGACTACG 58.627 55.000 0.00 0.00 42.93 3.51
1762 1904 5.297776 TCTTATTACTACCACCAGCGACTAC 59.702 44.000 0.00 0.00 0.00 2.73
1763 1905 5.439721 TCTTATTACTACCACCAGCGACTA 58.560 41.667 0.00 0.00 0.00 2.59
1764 1906 4.275810 TCTTATTACTACCACCAGCGACT 58.724 43.478 0.00 0.00 0.00 4.18
1765 1907 4.644103 TCTTATTACTACCACCAGCGAC 57.356 45.455 0.00 0.00 0.00 5.19
1781 1924 6.861144 GGTGACGGTAGTTCTTAGTTCTTAT 58.139 40.000 0.00 0.00 0.00 1.73
1782 1925 6.259550 GGTGACGGTAGTTCTTAGTTCTTA 57.740 41.667 0.00 0.00 0.00 2.10
1783 1926 5.131594 GGTGACGGTAGTTCTTAGTTCTT 57.868 43.478 0.00 0.00 0.00 2.52
1784 1927 4.780275 GGTGACGGTAGTTCTTAGTTCT 57.220 45.455 0.00 0.00 0.00 3.01
1836 1979 3.655777 ACTCCCAACCAGAAACATCCTTA 59.344 43.478 0.00 0.00 0.00 2.69
1838 1981 2.065799 ACTCCCAACCAGAAACATCCT 58.934 47.619 0.00 0.00 0.00 3.24
1864 2007 2.202623 GTACGGCCGAGACAGCAG 60.203 66.667 35.90 0.00 0.00 4.24
1912 2077 4.681978 AGACCCTGCCGCGAACAC 62.682 66.667 8.23 0.00 0.00 3.32
1923 2088 1.884235 CGCTTTTGAACAGAGACCCT 58.116 50.000 0.00 0.00 0.00 4.34
1946 2111 2.620112 CGCTGTGCCCAAAGTCCAG 61.620 63.158 0.00 0.00 0.00 3.86
2003 2168 1.222300 TGTCCGTCCAACAAACATCG 58.778 50.000 0.00 0.00 0.00 3.84
2032 2206 5.678583 TCTGCACTACTAGTAGTCGGTAAT 58.321 41.667 28.86 6.83 43.98 1.89
2034 2208 4.743057 TCTGCACTACTAGTAGTCGGTA 57.257 45.455 28.86 18.36 43.98 4.02
2207 2396 2.617774 GGACGGAGGGAGTATATATCGC 59.382 54.545 0.00 0.00 0.00 4.58
2214 2403 2.544844 TTTCTGGACGGAGGGAGTAT 57.455 50.000 0.00 0.00 0.00 2.12
2215 2404 2.544844 ATTTCTGGACGGAGGGAGTA 57.455 50.000 0.00 0.00 0.00 2.59
2216 2405 2.108970 GTATTTCTGGACGGAGGGAGT 58.891 52.381 0.00 0.00 0.00 3.85
2217 2406 2.389715 AGTATTTCTGGACGGAGGGAG 58.610 52.381 0.00 0.00 0.00 4.30
2218 2407 2.500098 CAAGTATTTCTGGACGGAGGGA 59.500 50.000 0.00 0.00 0.00 4.20
2219 2408 2.236395 ACAAGTATTTCTGGACGGAGGG 59.764 50.000 0.00 0.00 0.00 4.30
2220 2409 3.056107 TGACAAGTATTTCTGGACGGAGG 60.056 47.826 0.00 0.00 0.00 4.30
2221 2410 4.188247 TGACAAGTATTTCTGGACGGAG 57.812 45.455 0.00 0.00 0.00 4.63
2222 2411 4.819105 ATGACAAGTATTTCTGGACGGA 57.181 40.909 0.00 0.00 0.00 4.69
2223 2412 6.978343 TTAATGACAAGTATTTCTGGACGG 57.022 37.500 0.00 0.00 0.00 4.79
2224 2413 9.277565 CATTTTAATGACAAGTATTTCTGGACG 57.722 33.333 0.00 0.00 38.70 4.79
2225 2414 9.573133 CCATTTTAATGACAAGTATTTCTGGAC 57.427 33.333 4.07 0.00 38.70 4.02
2226 2415 9.527157 TCCATTTTAATGACAAGTATTTCTGGA 57.473 29.630 4.07 0.00 38.70 3.86
2288 2477 9.339850 TCCGTCCGGAAATATTTATCATTAAAA 57.660 29.630 5.23 0.00 42.05 1.52
2289 2478 8.905660 TCCGTCCGGAAATATTTATCATTAAA 57.094 30.769 5.23 0.00 42.05 1.52
2290 2479 7.604927 CCTCCGTCCGGAAATATTTATCATTAA 59.395 37.037 5.23 0.00 44.66 1.40
2291 2480 7.101054 CCTCCGTCCGGAAATATTTATCATTA 58.899 38.462 5.23 0.00 44.66 1.90
2292 2481 5.938125 CCTCCGTCCGGAAATATTTATCATT 59.062 40.000 5.23 0.00 44.66 2.57
2293 2482 5.488341 CCTCCGTCCGGAAATATTTATCAT 58.512 41.667 5.23 0.00 44.66 2.45
2294 2483 4.262721 CCCTCCGTCCGGAAATATTTATCA 60.263 45.833 5.23 0.00 44.66 2.15
2295 2484 4.020839 TCCCTCCGTCCGGAAATATTTATC 60.021 45.833 5.23 0.00 44.66 1.75
2296 2485 3.905591 TCCCTCCGTCCGGAAATATTTAT 59.094 43.478 5.23 0.00 44.66 1.40
2297 2486 3.307506 TCCCTCCGTCCGGAAATATTTA 58.692 45.455 5.23 0.00 44.66 1.40
2298 2487 2.104281 CTCCCTCCGTCCGGAAATATTT 59.896 50.000 5.23 0.00 44.66 1.40
2299 2488 1.692519 CTCCCTCCGTCCGGAAATATT 59.307 52.381 5.23 0.00 44.66 1.28
2300 2489 1.339097 CTCCCTCCGTCCGGAAATAT 58.661 55.000 5.23 0.00 44.66 1.28
2301 2490 0.032813 ACTCCCTCCGTCCGGAAATA 60.033 55.000 5.23 0.00 44.66 1.40
2302 2491 0.032813 TACTCCCTCCGTCCGGAAAT 60.033 55.000 5.23 0.00 44.66 2.17
2303 2492 0.032813 ATACTCCCTCCGTCCGGAAA 60.033 55.000 5.23 0.00 44.66 3.13
2304 2493 0.846015 TATACTCCCTCCGTCCGGAA 59.154 55.000 5.23 0.00 44.66 4.30
2305 2494 1.070604 ATATACTCCCTCCGTCCGGA 58.929 55.000 0.00 0.00 42.90 5.14
2306 2495 2.795231 TATATACTCCCTCCGTCCGG 57.205 55.000 0.00 0.00 0.00 5.14
2307 2496 5.458041 TTTTTATATACTCCCTCCGTCCG 57.542 43.478 0.00 0.00 0.00 4.79
2353 2542 2.242708 AGTTTTGTTGTCACCTACCCCA 59.757 45.455 0.00 0.00 0.00 4.96
2354 2543 2.940158 AGTTTTGTTGTCACCTACCCC 58.060 47.619 0.00 0.00 0.00 4.95
2394 2589 9.959749 TGTGAAACTGAAATGGTTTATTAACTC 57.040 29.630 0.00 0.00 37.07 3.01
2398 2593 6.858993 GCGTGTGAAACTGAAATGGTTTATTA 59.141 34.615 0.00 0.00 37.07 0.98
2448 2657 2.040278 TCCAAGCAGCTACTGTCCATTT 59.960 45.455 0.00 0.00 33.43 2.32
2456 2670 5.423610 TCTCTCTATTTTCCAAGCAGCTACT 59.576 40.000 0.00 0.00 0.00 2.57
2497 2711 4.911901 TTTTTCACCCCCACCTCG 57.088 55.556 0.00 0.00 0.00 4.63
2545 2759 3.708563 TTGTCAAAAGGAAAAGGCGAG 57.291 42.857 0.00 0.00 0.00 5.03
2599 3332 6.259167 TCGGTTATTTGCACACTAATGGTATC 59.741 38.462 0.00 0.00 0.00 2.24
2607 3341 4.453136 GTCCTTTCGGTTATTTGCACACTA 59.547 41.667 0.00 0.00 0.00 2.74
2665 3399 0.741915 TTTCGTGAAACCTGTTGGCC 59.258 50.000 0.00 0.00 36.63 5.36
2737 3472 5.007234 TCACAAACGAGGACACACTAAATTG 59.993 40.000 0.00 0.00 0.00 2.32
2747 3482 2.063266 GCGTAATCACAAACGAGGACA 58.937 47.619 0.00 0.00 41.55 4.02
2754 3496 1.798087 CCCCCGCGTAATCACAAAC 59.202 57.895 4.92 0.00 0.00 2.93
2772 3514 0.538287 AGTTCCACCAAGCTTCCAGC 60.538 55.000 0.00 0.00 42.84 4.85
2821 3563 7.588497 AAATAAAAGAAGCTGAGTGGTTTCT 57.412 32.000 0.00 0.00 38.15 2.52
2888 3644 7.143340 GTGCGTGTGTGAAGAACCTATATATA 58.857 38.462 0.00 0.00 0.00 0.86
2890 3646 5.345702 GTGCGTGTGTGAAGAACCTATATA 58.654 41.667 0.00 0.00 0.00 0.86
2914 3670 3.773630 ATGTACGTGCGTGCGTGC 61.774 61.111 14.68 13.74 45.33 5.34
2922 3678 5.666969 TTAATTATCCTGCATGTACGTGC 57.333 39.130 29.29 29.29 45.25 5.34
2923 3679 9.169468 GAATTTTAATTATCCTGCATGTACGTG 57.831 33.333 10.89 10.89 0.00 4.49
2924 3680 8.898761 TGAATTTTAATTATCCTGCATGTACGT 58.101 29.630 0.00 0.00 0.00 3.57
2925 3681 9.897744 ATGAATTTTAATTATCCTGCATGTACG 57.102 29.630 0.00 0.00 0.00 3.67
2992 3748 6.721668 TCACCACGGAGAGATCAATATATCTT 59.278 38.462 0.00 0.00 33.80 2.40
3024 3780 9.832445 TTTCTAGTAGACACTTTTCATTGAAGT 57.168 29.630 0.00 0.00 37.82 3.01
3054 3810 8.792830 TTTCTCCAAGAATTCATTCGTTAGAT 57.207 30.769 8.44 0.00 41.56 1.98
3122 3882 3.763097 TCCAAATCGATGTGCACATTC 57.237 42.857 31.82 22.30 36.57 2.67
3192 3952 7.984050 TGAAGCATTGTCCACTTTTGAAATAAA 59.016 29.630 0.00 0.00 0.00 1.40
3246 4007 6.966534 AGCCCTTTTGACCATTATATTCTG 57.033 37.500 0.00 0.00 0.00 3.02
3280 4041 5.129634 TGCAACTTTGACTATGTTTCAGGA 58.870 37.500 0.00 0.00 0.00 3.86
3283 4044 6.425417 TCGTATGCAACTTTGACTATGTTTCA 59.575 34.615 0.00 0.00 0.00 2.69
3327 4088 5.277601 GCAAAGAGCAAACTAACACGATA 57.722 39.130 0.00 0.00 44.79 2.92
3341 4102 2.996621 ACTGAATCGTACAGCAAAGAGC 59.003 45.455 0.00 0.00 46.19 4.09
3342 4103 5.864474 ACTTACTGAATCGTACAGCAAAGAG 59.136 40.000 18.13 9.05 38.74 2.85
3343 4104 5.633601 CACTTACTGAATCGTACAGCAAAGA 59.366 40.000 18.13 0.00 38.74 2.52
3344 4105 5.633601 TCACTTACTGAATCGTACAGCAAAG 59.366 40.000 0.00 0.00 38.74 2.77
3354 4115 7.827819 TGGAACTTTATCACTTACTGAATCG 57.172 36.000 0.00 0.00 30.60 3.34
3425 4189 1.399791 GGAGAGCTGGCTGAATTTTCG 59.600 52.381 0.00 0.00 0.00 3.46
3531 4299 8.616076 GCATGTCTAGAAACAAAAGCAGTATAT 58.384 33.333 0.00 0.00 31.81 0.86
3532 4300 7.065803 GGCATGTCTAGAAACAAAAGCAGTATA 59.934 37.037 0.00 0.00 31.81 1.47
3533 4301 6.127897 GGCATGTCTAGAAACAAAAGCAGTAT 60.128 38.462 0.00 0.00 31.81 2.12
3538 4310 3.492313 CGGCATGTCTAGAAACAAAAGC 58.508 45.455 0.00 0.00 31.81 3.51
3547 4319 3.132111 TCAAACTATGCGGCATGTCTAGA 59.868 43.478 24.99 13.99 0.00 2.43
3555 4327 1.535028 CAACAGTCAAACTATGCGGCA 59.465 47.619 4.58 4.58 0.00 5.69
3558 4330 5.688823 TGAATTCAACAGTCAAACTATGCG 58.311 37.500 5.45 0.00 0.00 4.73
3561 4333 7.458409 AGCATGAATTCAACAGTCAAACTAT 57.542 32.000 13.09 0.00 0.00 2.12
3574 4346 8.632679 GGGATTTATAGTCAAAGCATGAATTCA 58.367 33.333 11.26 11.26 40.50 2.57
3599 4371 8.083828 AGCCATTGACTACATATTATAGGAGG 57.916 38.462 0.00 0.00 0.00 4.30
3713 4486 3.132160 CAAATGCATGCTTTGACCAACA 58.868 40.909 25.60 3.63 35.99 3.33
3763 4536 9.408069 ACGTTATCTAAACTTTTGTGAGAGTAG 57.592 33.333 0.00 0.00 31.41 2.57
3764 4537 9.403110 GACGTTATCTAAACTTTTGTGAGAGTA 57.597 33.333 0.00 0.00 31.41 2.59
3772 4545 4.152759 TGGCGGACGTTATCTAAACTTTTG 59.847 41.667 0.00 0.00 0.00 2.44
3773 4546 4.317488 TGGCGGACGTTATCTAAACTTTT 58.683 39.130 0.00 0.00 0.00 2.27
3784 4557 1.807742 CTTTGGATTTGGCGGACGTTA 59.192 47.619 0.00 0.00 0.00 3.18
3892 5344 1.065401 CTTGGTTTGTGCGTGACATGT 59.935 47.619 0.00 0.00 33.40 3.21
3933 5392 6.598064 ACTCAATCCCTCAACTAATAAAACCG 59.402 38.462 0.00 0.00 0.00 4.44
3965 5427 7.580910 AGAAATCATCCATCAACTCCAATACT 58.419 34.615 0.00 0.00 0.00 2.12
3968 5430 6.320672 GTGAGAAATCATCCATCAACTCCAAT 59.679 38.462 0.00 0.00 0.00 3.16
3979 5441 6.772605 TCTTGAGAAAGTGAGAAATCATCCA 58.227 36.000 0.00 0.00 0.00 3.41
3983 5445 8.681486 TGAATTCTTGAGAAAGTGAGAAATCA 57.319 30.769 7.05 0.00 36.33 2.57
3991 5453 4.457257 GGTCCCTGAATTCTTGAGAAAGTG 59.543 45.833 7.05 0.00 37.61 3.16
3994 5456 4.722526 TGGTCCCTGAATTCTTGAGAAA 57.277 40.909 7.05 0.00 37.61 2.52
4000 5462 6.441604 AGCATATTTTTGGTCCCTGAATTCTT 59.558 34.615 7.05 0.00 0.00 2.52
4083 5564 0.760567 TATCAGACTGGGGCGCATCT 60.761 55.000 10.83 7.61 0.00 2.90
4089 5570 2.050144 TGATTCCTATCAGACTGGGGC 58.950 52.381 1.81 0.00 35.87 5.80
4099 5580 9.788960 GTTAATTTTGGTTCACTGATTCCTATC 57.211 33.333 0.00 0.00 0.00 2.08
4100 5581 9.308000 TGTTAATTTTGGTTCACTGATTCCTAT 57.692 29.630 0.00 0.00 0.00 2.57
4164 5645 4.975147 TGGGAGTAAACATCATATCCACCT 59.025 41.667 0.00 0.00 0.00 4.00
4184 5666 1.548719 TGTCATCTACTGTCCGTTGGG 59.451 52.381 0.00 0.00 0.00 4.12
4209 5699 5.890110 ATTTACTACATTGAGCGACATCG 57.110 39.130 0.00 0.00 43.27 3.84
4233 5723 9.893305 ACATATTTCACTTTAGCAAAACTGTAC 57.107 29.630 0.00 0.00 0.00 2.90
4236 5726 7.329226 CCCACATATTTCACTTTAGCAAAACTG 59.671 37.037 0.00 0.00 0.00 3.16
4237 5727 7.232534 TCCCACATATTTCACTTTAGCAAAACT 59.767 33.333 0.00 0.00 0.00 2.66
4238 5728 7.328493 GTCCCACATATTTCACTTTAGCAAAAC 59.672 37.037 0.00 0.00 0.00 2.43
4239 5729 7.232534 AGTCCCACATATTTCACTTTAGCAAAA 59.767 33.333 0.00 0.00 0.00 2.44
4240 5730 6.719370 AGTCCCACATATTTCACTTTAGCAAA 59.281 34.615 0.00 0.00 0.00 3.68
4241 5731 6.245408 AGTCCCACATATTTCACTTTAGCAA 58.755 36.000 0.00 0.00 0.00 3.91
4242 5732 5.815581 AGTCCCACATATTTCACTTTAGCA 58.184 37.500 0.00 0.00 0.00 3.49
4243 5733 7.859325 TTAGTCCCACATATTTCACTTTAGC 57.141 36.000 0.00 0.00 0.00 3.09
4244 5734 9.613428 TCATTAGTCCCACATATTTCACTTTAG 57.387 33.333 0.00 0.00 0.00 1.85
4245 5735 9.967451 TTCATTAGTCCCACATATTTCACTTTA 57.033 29.630 0.00 0.00 0.00 1.85
4246 5736 8.877864 TTCATTAGTCCCACATATTTCACTTT 57.122 30.769 0.00 0.00 0.00 2.66
4247 5737 8.877864 TTTCATTAGTCCCACATATTTCACTT 57.122 30.769 0.00 0.00 0.00 3.16
4321 5811 7.253950 CGATCAAGAAACATTTCCAAACGTTTT 60.254 33.333 11.66 0.00 37.92 2.43
4331 5821 6.373779 ACATGTGTCGATCAAGAAACATTTC 58.626 36.000 0.00 0.00 44.32 2.17
4337 5827 4.619760 GTCGTACATGTGTCGATCAAGAAA 59.380 41.667 23.24 4.04 36.08 2.52
4357 5847 2.390288 CGACGCGGAACATTGTCG 59.610 61.111 12.47 3.74 46.57 4.35
4515 6007 2.698763 GGACTGGGGAGTCGTCGTC 61.699 68.421 0.00 0.00 39.57 4.20
4516 6008 2.675772 GGACTGGGGAGTCGTCGT 60.676 66.667 0.00 0.00 39.57 4.34
4517 6009 2.361357 AGGACTGGGGAGTCGTCG 60.361 66.667 0.00 0.00 39.57 5.12
4536 6028 1.967494 GCCGGTTCCGCTGGTTTTA 60.967 57.895 1.90 0.00 45.57 1.52
4543 6035 2.739671 GTTTACGCCGGTTCCGCT 60.740 61.111 1.90 0.00 0.00 5.52
4803 6295 1.142748 GTCTCCGTCCATCAGCAGG 59.857 63.158 0.00 0.00 0.00 4.85
5196 6694 8.925700 AGTCTGCTTTTTCTAAAGTTTTGTTTG 58.074 29.630 0.00 0.00 42.25 2.93
5198 6696 9.489084 AAAGTCTGCTTTTTCTAAAGTTTTGTT 57.511 25.926 0.00 0.00 41.78 2.83
5200 6698 8.382875 CCAAAGTCTGCTTTTTCTAAAGTTTTG 58.617 33.333 0.00 0.00 42.54 2.44
5210 6714 4.370364 TGTGTCCAAAGTCTGCTTTTTC 57.630 40.909 0.00 0.00 42.54 2.29
5211 6715 4.799564 TTGTGTCCAAAGTCTGCTTTTT 57.200 36.364 0.00 0.00 42.54 1.94
5246 6756 8.752187 AGTTCTTATATTTCTTACACGGGTACA 58.248 33.333 0.00 0.00 0.00 2.90
5263 6776 6.213677 CAGCGTACCTGCATTAGTTCTTATA 58.786 40.000 0.00 0.00 37.31 0.98
5264 6777 5.050490 CAGCGTACCTGCATTAGTTCTTAT 58.950 41.667 0.00 0.00 37.31 1.73
5295 6808 6.270927 TCCATCTTCCAATCTCCCTATTACAG 59.729 42.308 0.00 0.00 0.00 2.74
5296 6809 6.150332 TCCATCTTCCAATCTCCCTATTACA 58.850 40.000 0.00 0.00 0.00 2.41
5297 6810 6.688073 TCCATCTTCCAATCTCCCTATTAC 57.312 41.667 0.00 0.00 0.00 1.89
5298 6811 5.249393 GCTCCATCTTCCAATCTCCCTATTA 59.751 44.000 0.00 0.00 0.00 0.98
5299 6812 4.042684 GCTCCATCTTCCAATCTCCCTATT 59.957 45.833 0.00 0.00 0.00 1.73
5300 6813 3.586618 GCTCCATCTTCCAATCTCCCTAT 59.413 47.826 0.00 0.00 0.00 2.57
5305 6818 3.993920 GAGAGCTCCATCTTCCAATCTC 58.006 50.000 10.93 0.00 0.00 2.75
5343 6915 6.714810 TCTGCAAACCTTTATGTGTGTAATCT 59.285 34.615 0.00 0.00 0.00 2.40
5359 6931 4.261801 TCCTAGCATTAGTTCTGCAAACC 58.738 43.478 7.77 0.00 42.15 3.27
5496 7075 9.595823 GGAGTTAGTACTATATTTCTTGCAACA 57.404 33.333 2.79 0.00 33.84 3.33
5518 7097 3.583086 CCCCACTTATTATGGATCGGAGT 59.417 47.826 0.00 0.00 39.87 3.85
5522 7101 3.244561 ACTGCCCCACTTATTATGGATCG 60.245 47.826 0.00 0.00 39.87 3.69
5555 7134 6.566197 TTGTTCAAAACTGCCACAATTTTT 57.434 29.167 0.00 0.00 0.00 1.94
5556 7135 6.377780 GTTTGTTCAAAACTGCCACAATTTT 58.622 32.000 0.00 0.00 0.00 1.82
5557 7136 5.106357 GGTTTGTTCAAAACTGCCACAATTT 60.106 36.000 6.13 0.00 0.00 1.82
5558 7137 4.394610 GGTTTGTTCAAAACTGCCACAATT 59.605 37.500 6.13 0.00 0.00 2.32
5559 7138 3.938334 GGTTTGTTCAAAACTGCCACAAT 59.062 39.130 6.13 0.00 0.00 2.71
5560 7139 3.330267 GGTTTGTTCAAAACTGCCACAA 58.670 40.909 6.13 0.00 0.00 3.33
5561 7140 2.354203 GGGTTTGTTCAAAACTGCCACA 60.354 45.455 12.11 0.00 0.00 4.17
5562 7141 2.276201 GGGTTTGTTCAAAACTGCCAC 58.724 47.619 12.11 0.00 0.00 5.01
5563 7142 1.208293 GGGGTTTGTTCAAAACTGCCA 59.792 47.619 12.11 0.00 0.00 4.92
5564 7143 1.208293 TGGGGTTTGTTCAAAACTGCC 59.792 47.619 12.11 7.28 0.00 4.85
5565 7144 2.093711 ACTGGGGTTTGTTCAAAACTGC 60.094 45.455 12.11 0.00 0.00 4.40
5566 7145 3.885724 ACTGGGGTTTGTTCAAAACTG 57.114 42.857 12.11 6.62 0.00 3.16
5567 7146 3.835395 TGAACTGGGGTTTGTTCAAAACT 59.165 39.130 12.11 0.00 46.17 2.66
5568 7147 4.195225 TGAACTGGGGTTTGTTCAAAAC 57.805 40.909 4.92 4.92 46.17 2.43
5573 7152 4.465632 AGTTTTGAACTGGGGTTTGTTC 57.534 40.909 0.00 0.00 41.01 3.18
5596 7175 4.569653 CCCTCCCATCCAAAATAACTGACA 60.570 45.833 0.00 0.00 0.00 3.58
5598 7177 3.855599 TCCCTCCCATCCAAAATAACTGA 59.144 43.478 0.00 0.00 0.00 3.41
5629 7208 6.864165 GGTTAAACTACAATTGGCATTCGAAA 59.136 34.615 10.83 0.00 0.00 3.46
5638 7217 8.410141 TCACTTTCAAGGTTAAACTACAATTGG 58.590 33.333 10.83 0.00 0.00 3.16
5639 7218 9.796120 TTCACTTTCAAGGTTAAACTACAATTG 57.204 29.630 3.24 3.24 0.00 2.32
5671 7250 3.905678 CTCCTACGAGCAGCGGGG 61.906 72.222 4.06 5.66 46.49 5.73
5675 7254 0.383949 CTTCTCCTCCTACGAGCAGC 59.616 60.000 0.00 0.00 34.49 5.25
5678 7257 5.517322 TTTATTCTTCTCCTCCTACGAGC 57.483 43.478 0.00 0.00 34.49 5.03
5702 7282 7.612633 TCTCCTCCTACTAGAGTTTTCTTCTTC 59.387 40.741 0.00 0.00 34.79 2.87
5717 7297 6.613271 TCTTCTTTTATGCATCTCCTCCTACT 59.387 38.462 0.19 0.00 0.00 2.57
5718 7298 6.821388 TCTTCTTTTATGCATCTCCTCCTAC 58.179 40.000 0.19 0.00 0.00 3.18
5723 7303 7.887495 AGTTTCTTCTTCTTTTATGCATCTCCT 59.113 33.333 0.19 0.00 0.00 3.69
5744 7324 2.351455 GCCTGCTCCTACAAGAGTTTC 58.649 52.381 0.00 0.00 36.20 2.78
5745 7325 1.338200 CGCCTGCTCCTACAAGAGTTT 60.338 52.381 0.00 0.00 36.20 2.66
5746 7326 0.247736 CGCCTGCTCCTACAAGAGTT 59.752 55.000 0.00 0.00 36.20 3.01
5752 7332 2.679996 TGCTCGCCTGCTCCTACA 60.680 61.111 0.00 0.00 0.00 2.74
5762 7342 2.049185 TCTCAGACCTCTGCTCGCC 61.049 63.158 0.00 0.00 43.46 5.54
5769 7349 2.356741 GCCTCTACAGTCTCAGACCTCT 60.357 54.545 0.00 0.00 32.18 3.69
5798 7378 6.151663 TCATCGGTTCGAATGGTCTAAATA 57.848 37.500 0.00 0.00 39.99 1.40
5802 7382 3.798889 GCATCATCGGTTCGAATGGTCTA 60.799 47.826 0.00 0.00 39.99 2.59
5806 7386 1.298602 TGCATCATCGGTTCGAATGG 58.701 50.000 0.00 0.00 39.99 3.16
5812 7392 3.550842 GCCCTATTTTGCATCATCGGTTC 60.551 47.826 0.00 0.00 0.00 3.62
5843 7423 4.080072 CCTTCTCTCTCCTGCCCTAATTTT 60.080 45.833 0.00 0.00 0.00 1.82
5850 7430 0.988063 AAACCTTCTCTCTCCTGCCC 59.012 55.000 0.00 0.00 0.00 5.36
5855 7435 4.221924 ACTGCTCTAAAACCTTCTCTCTCC 59.778 45.833 0.00 0.00 0.00 3.71
5912 7497 3.169908 ACCATGTTTATTTGGGTGTCCC 58.830 45.455 0.00 0.00 45.71 4.46
5953 7538 4.374399 AGTTTGAACATTCGGTAGTTCGT 58.626 39.130 0.00 0.00 45.34 3.85
5954 7539 4.985044 AGTTTGAACATTCGGTAGTTCG 57.015 40.909 0.00 0.00 45.34 3.95
5958 7543 8.286800 TCATGTTTAAGTTTGAACATTCGGTAG 58.713 33.333 11.04 2.22 42.47 3.18
5977 7562 6.670027 ACCTTCCTAGTGAGTCTATCATGTTT 59.330 38.462 0.00 0.00 40.92 2.83
5980 7565 7.001674 AGTACCTTCCTAGTGAGTCTATCATG 58.998 42.308 0.00 0.00 40.92 3.07
5985 7570 5.658634 TCGTAGTACCTTCCTAGTGAGTCTA 59.341 44.000 0.00 0.00 0.00 2.59
5986 7571 4.469227 TCGTAGTACCTTCCTAGTGAGTCT 59.531 45.833 0.00 0.00 0.00 3.24
5987 7572 4.764172 TCGTAGTACCTTCCTAGTGAGTC 58.236 47.826 0.00 0.00 0.00 3.36
5988 7573 4.833478 TCGTAGTACCTTCCTAGTGAGT 57.167 45.455 0.00 0.00 0.00 3.41
5989 7574 6.646240 GTCTATCGTAGTACCTTCCTAGTGAG 59.354 46.154 0.00 0.00 0.00 3.51
5990 7575 6.098838 TGTCTATCGTAGTACCTTCCTAGTGA 59.901 42.308 0.00 0.00 0.00 3.41
5992 7577 6.099557 AGTGTCTATCGTAGTACCTTCCTAGT 59.900 42.308 0.00 0.00 0.00 2.57
5993 7578 6.523840 AGTGTCTATCGTAGTACCTTCCTAG 58.476 44.000 0.00 0.00 0.00 3.02
5994 7579 6.491714 AGTGTCTATCGTAGTACCTTCCTA 57.508 41.667 0.00 0.00 0.00 2.94
5996 7581 6.287525 AGTAGTGTCTATCGTAGTACCTTCC 58.712 44.000 0.00 0.00 0.00 3.46
5997 7582 7.114247 CGTAGTAGTGTCTATCGTAGTACCTTC 59.886 44.444 0.00 0.00 0.00 3.46
5999 7584 6.442952 CGTAGTAGTGTCTATCGTAGTACCT 58.557 44.000 0.00 0.00 0.00 3.08
6001 7586 6.361214 GTCCGTAGTAGTGTCTATCGTAGTAC 59.639 46.154 0.00 0.00 0.00 2.73
6023 7612 2.363788 TGATGACAAGTAGTGCGTCC 57.636 50.000 0.00 0.00 0.00 4.79
6025 7614 2.418746 GGGATGATGACAAGTAGTGCGT 60.419 50.000 0.00 0.00 0.00 5.24


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.