Multiple sequence alignment - TraesCS5A01G237600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G237600 chr5A 100.000 3273 0 0 1 3273 453878171 453874899 0.000000e+00 6045.0
1 TraesCS5A01G237600 chr5A 82.222 225 37 2 1034 1258 525079281 525079060 1.200000e-44 191.0
2 TraesCS5A01G237600 chr5B 91.272 2303 93 38 574 2860 416851593 416849383 0.000000e+00 3040.0
3 TraesCS5A01G237600 chr5B 94.231 208 11 1 29 235 416851970 416851763 1.900000e-82 316.0
4 TraesCS5A01G237600 chr5B 83.178 214 31 4 1046 1258 497757969 497757760 1.200000e-44 191.0
5 TraesCS5A01G237600 chr5D 91.459 2283 84 42 574 2813 352218770 352220984 0.000000e+00 3033.0
6 TraesCS5A01G237600 chr5D 90.833 240 10 7 1 235 352218370 352218602 8.820000e-81 311.0
7 TraesCS5A01G237600 chr5D 88.372 172 17 3 2924 3092 352237394 352237565 1.540000e-48 204.0
8 TraesCS5A01G237600 chr5D 82.805 221 35 2 1038 1258 413058989 413058772 9.270000e-46 195.0
9 TraesCS5A01G237600 chr5D 81.132 212 35 4 1066 1277 558247758 558247552 7.270000e-37 165.0
10 TraesCS5A01G237600 chr4D 87.126 334 37 6 1476 1806 301763371 301763041 1.110000e-99 374.0
11 TraesCS5A01G237600 chr2B 86.574 216 24 3 1045 1258 146442463 146442251 1.960000e-57 233.0
12 TraesCS5A01G237600 chr2B 93.182 44 3 0 3230 3273 412232666 412232709 7.580000e-07 65.8
13 TraesCS5A01G237600 chr2A 87.624 202 22 2 1057 1258 92318263 92318065 7.060000e-57 231.0
14 TraesCS5A01G237600 chr2D 88.205 195 20 2 1064 1258 94319393 94319202 2.540000e-56 230.0
15 TraesCS5A01G237600 chrUn 95.455 44 2 0 3230 3273 56779480 56779523 1.630000e-08 71.3
16 TraesCS5A01G237600 chr7D 95.455 44 2 0 3230 3273 512211138 512211095 1.630000e-08 71.3
17 TraesCS5A01G237600 chr7D 97.222 36 1 0 283 318 401849116 401849081 9.810000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G237600 chr5A 453874899 453878171 3272 True 6045 6045 100.0000 1 3273 1 chr5A.!!$R1 3272
1 TraesCS5A01G237600 chr5B 416849383 416851970 2587 True 1678 3040 92.7515 29 2860 2 chr5B.!!$R2 2831
2 TraesCS5A01G237600 chr5D 352218370 352220984 2614 False 1672 3033 91.1460 1 2813 2 chr5D.!!$F2 2812

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
561 623 0.110823 CCGAGAAAACAAACGGAGCG 60.111 55.0 0.0 0.0 46.94 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2321 2415 0.394899 GGATGCTACCCTGCTTGCTT 60.395 55.0 0.0 0.0 0.0 3.91 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
20 21 3.072486 GCCCCTTCGTACGCTGCTA 62.072 63.158 11.24 0.00 0.00 3.49
21 22 1.226888 CCCCTTCGTACGCTGCTAC 60.227 63.158 11.24 0.00 0.00 3.58
22 23 1.664321 CCCCTTCGTACGCTGCTACT 61.664 60.000 11.24 0.00 0.00 2.57
23 24 1.019673 CCCTTCGTACGCTGCTACTA 58.980 55.000 11.24 0.00 0.00 1.82
24 25 1.002684 CCCTTCGTACGCTGCTACTAG 60.003 57.143 11.24 0.00 0.00 2.57
25 26 1.669779 CCTTCGTACGCTGCTACTAGT 59.330 52.381 11.24 0.00 0.00 2.57
26 27 2.868583 CCTTCGTACGCTGCTACTAGTA 59.131 50.000 11.24 1.89 0.00 1.82
99 104 3.879295 GCATATACTGTGTGGCATTGACT 59.121 43.478 0.00 0.00 0.00 3.41
149 155 0.805614 TTTCCTCTCGTCTCTCTGCG 59.194 55.000 0.00 0.00 0.00 5.18
172 178 3.365220 ACGAGAAAAGAAAAGAGCGATCG 59.635 43.478 11.69 11.69 0.00 3.69
225 231 3.864686 CCTGTCCGGCGCGAAATG 61.865 66.667 12.10 0.00 0.00 2.32
235 241 1.937899 GGCGCGAAATGTACAAGGTAT 59.062 47.619 12.10 0.00 0.00 2.73
237 243 3.181504 GGCGCGAAATGTACAAGGTATTT 60.182 43.478 12.10 0.00 0.00 1.40
238 244 4.026407 GCGCGAAATGTACAAGGTATTTC 58.974 43.478 12.10 4.24 37.42 2.17
239 245 4.584394 CGCGAAATGTACAAGGTATTTCC 58.416 43.478 0.00 0.00 37.46 3.13
240 246 4.495184 CGCGAAATGTACAAGGTATTTCCC 60.495 45.833 0.00 0.00 37.46 3.97
241 247 4.396790 GCGAAATGTACAAGGTATTTCCCA 59.603 41.667 0.00 0.00 37.46 4.37
252 314 7.801104 ACAAGGTATTTCCCACTTTGATTTTT 58.199 30.769 4.60 0.00 36.70 1.94
254 316 6.768483 AGGTATTTCCCACTTTGATTTTTGG 58.232 36.000 0.00 0.00 36.75 3.28
266 328 2.224402 TGATTTTTGGCGGAAAAAGGGG 60.224 45.455 9.90 0.00 44.76 4.79
267 329 1.205055 TTTTTGGCGGAAAAAGGGGT 58.795 45.000 1.87 0.00 38.38 4.95
268 330 0.753867 TTTTGGCGGAAAAAGGGGTC 59.246 50.000 0.00 0.00 30.25 4.46
271 333 3.060000 GCGGAAAAAGGGGTCGGG 61.060 66.667 0.00 0.00 0.00 5.14
272 334 2.433004 CGGAAAAAGGGGTCGGGT 59.567 61.111 0.00 0.00 0.00 5.28
273 335 1.969589 CGGAAAAAGGGGTCGGGTG 60.970 63.158 0.00 0.00 0.00 4.61
274 336 1.152138 GGAAAAAGGGGTCGGGTGT 59.848 57.895 0.00 0.00 0.00 4.16
275 337 0.401356 GGAAAAAGGGGTCGGGTGTA 59.599 55.000 0.00 0.00 0.00 2.90
286 348 3.054875 GGGTCGGGTGTAGTAAAGGAAAT 60.055 47.826 0.00 0.00 0.00 2.17
287 349 4.162131 GGGTCGGGTGTAGTAAAGGAAATA 59.838 45.833 0.00 0.00 0.00 1.40
288 350 5.111989 GGTCGGGTGTAGTAAAGGAAATAC 58.888 45.833 0.00 0.00 0.00 1.89
289 351 5.105187 GGTCGGGTGTAGTAAAGGAAATACT 60.105 44.000 0.00 0.00 37.39 2.12
290 352 6.038985 GTCGGGTGTAGTAAAGGAAATACTC 58.961 44.000 0.00 0.00 35.34 2.59
291 353 5.127682 TCGGGTGTAGTAAAGGAAATACTCC 59.872 44.000 0.00 0.00 45.81 3.85
292 354 5.678583 GGGTGTAGTAAAGGAAATACTCCC 58.321 45.833 6.02 6.02 46.81 4.30
293 355 5.427806 GGGTGTAGTAAAGGAAATACTCCCT 59.572 44.000 12.07 0.00 46.81 4.20
294 356 6.069789 GGGTGTAGTAAAGGAAATACTCCCTT 60.070 42.308 12.07 0.00 46.81 3.95
303 365 7.914427 AAGGAAATACTCCCTTTGTTTCTTT 57.086 32.000 0.00 0.00 46.81 2.52
304 366 7.914427 AGGAAATACTCCCTTTGTTTCTTTT 57.086 32.000 0.00 0.00 46.81 2.27
305 367 8.319057 AGGAAATACTCCCTTTGTTTCTTTTT 57.681 30.769 0.00 0.00 46.81 1.94
306 368 9.429109 AGGAAATACTCCCTTTGTTTCTTTTTA 57.571 29.630 0.00 0.00 46.81 1.52
307 369 9.472361 GGAAATACTCCCTTTGTTTCTTTTTAC 57.528 33.333 0.00 0.00 38.44 2.01
310 372 6.710597 ACTCCCTTTGTTTCTTTTTACTCC 57.289 37.500 0.00 0.00 0.00 3.85
311 373 5.298527 ACTCCCTTTGTTTCTTTTTACTCCG 59.701 40.000 0.00 0.00 0.00 4.63
312 374 5.195185 TCCCTTTGTTTCTTTTTACTCCGT 58.805 37.500 0.00 0.00 0.00 4.69
313 375 6.355747 TCCCTTTGTTTCTTTTTACTCCGTA 58.644 36.000 0.00 0.00 0.00 4.02
314 376 6.999871 TCCCTTTGTTTCTTTTTACTCCGTAT 59.000 34.615 0.00 0.00 0.00 3.06
315 377 8.156165 TCCCTTTGTTTCTTTTTACTCCGTATA 58.844 33.333 0.00 0.00 0.00 1.47
316 378 8.953313 CCCTTTGTTTCTTTTTACTCCGTATAT 58.047 33.333 0.00 0.00 0.00 0.86
344 406 3.945981 TTTTTGCGGGGATTTTACTCC 57.054 42.857 0.00 0.00 34.31 3.85
354 416 6.029346 GGGGATTTTACTCCGTATATTCGA 57.971 41.667 3.00 0.00 36.05 3.71
355 417 6.637657 GGGGATTTTACTCCGTATATTCGAT 58.362 40.000 3.00 0.00 36.05 3.59
356 418 7.101700 GGGGATTTTACTCCGTATATTCGATT 58.898 38.462 3.00 0.00 36.05 3.34
357 419 7.605309 GGGGATTTTACTCCGTATATTCGATTT 59.395 37.037 3.00 0.00 36.05 2.17
358 420 8.440833 GGGATTTTACTCCGTATATTCGATTTG 58.559 37.037 3.00 0.00 36.05 2.32
359 421 8.985805 GGATTTTACTCCGTATATTCGATTTGT 58.014 33.333 3.00 0.03 0.00 2.83
361 423 8.929827 TTTTACTCCGTATATTCGATTTGTCA 57.070 30.769 3.00 0.00 0.00 3.58
362 424 9.537192 TTTTACTCCGTATATTCGATTTGTCAT 57.463 29.630 3.00 0.00 0.00 3.06
365 427 8.744008 ACTCCGTATATTCGATTTGTCATAAG 57.256 34.615 3.00 0.00 0.00 1.73
366 428 8.358148 ACTCCGTATATTCGATTTGTCATAAGT 58.642 33.333 3.00 0.00 0.00 2.24
367 429 8.738199 TCCGTATATTCGATTTGTCATAAGTC 57.262 34.615 3.00 0.00 0.00 3.01
368 430 8.354426 TCCGTATATTCGATTTGTCATAAGTCA 58.646 33.333 3.00 0.00 0.00 3.41
369 431 8.974408 CCGTATATTCGATTTGTCATAAGTCAA 58.026 33.333 3.00 0.00 0.00 3.18
428 490 9.840427 AAATACCAACATCTACAAAAGAAATCG 57.160 29.630 0.00 0.00 37.89 3.34
429 491 8.786826 ATACCAACATCTACAAAAGAAATCGA 57.213 30.769 0.00 0.00 37.89 3.59
430 492 7.133891 ACCAACATCTACAAAAGAAATCGAG 57.866 36.000 0.00 0.00 37.89 4.04
431 493 6.149474 ACCAACATCTACAAAAGAAATCGAGG 59.851 38.462 0.00 0.00 37.89 4.63
432 494 6.403636 CCAACATCTACAAAAGAAATCGAGGG 60.404 42.308 0.00 0.00 37.89 4.30
433 495 5.805728 ACATCTACAAAAGAAATCGAGGGT 58.194 37.500 0.00 0.00 37.89 4.34
434 496 6.238648 ACATCTACAAAAGAAATCGAGGGTT 58.761 36.000 0.00 0.00 37.89 4.11
435 497 6.715264 ACATCTACAAAAGAAATCGAGGGTTT 59.285 34.615 0.00 0.00 37.89 3.27
436 498 6.554334 TCTACAAAAGAAATCGAGGGTTTG 57.446 37.500 0.00 0.00 33.31 2.93
437 499 6.292923 TCTACAAAAGAAATCGAGGGTTTGA 58.707 36.000 13.46 2.00 31.89 2.69
438 500 5.183014 ACAAAAGAAATCGAGGGTTTGAC 57.817 39.130 13.46 0.00 31.89 3.18
439 501 4.887655 ACAAAAGAAATCGAGGGTTTGACT 59.112 37.500 13.46 0.00 31.89 3.41
440 502 5.359860 ACAAAAGAAATCGAGGGTTTGACTT 59.640 36.000 13.46 0.00 31.89 3.01
441 503 6.127451 ACAAAAGAAATCGAGGGTTTGACTTT 60.127 34.615 13.46 0.00 31.89 2.66
442 504 7.067737 ACAAAAGAAATCGAGGGTTTGACTTTA 59.932 33.333 13.46 0.00 31.89 1.85
443 505 6.803154 AAGAAATCGAGGGTTTGACTTTAG 57.197 37.500 0.00 0.00 0.00 1.85
444 506 6.110411 AGAAATCGAGGGTTTGACTTTAGA 57.890 37.500 0.00 0.00 0.00 2.10
445 507 5.932883 AGAAATCGAGGGTTTGACTTTAGAC 59.067 40.000 0.00 0.00 0.00 2.59
446 508 4.884668 ATCGAGGGTTTGACTTTAGACA 57.115 40.909 0.00 0.00 0.00 3.41
447 509 4.675976 TCGAGGGTTTGACTTTAGACAA 57.324 40.909 0.00 0.00 0.00 3.18
448 510 5.026038 TCGAGGGTTTGACTTTAGACAAA 57.974 39.130 3.81 3.81 37.36 2.83
454 516 5.978934 GTTTGACTTTAGACAAACCTCGA 57.021 39.130 19.88 0.00 46.80 4.04
455 517 6.541111 GTTTGACTTTAGACAAACCTCGAT 57.459 37.500 19.88 0.00 46.80 3.59
456 518 7.647907 GTTTGACTTTAGACAAACCTCGATA 57.352 36.000 19.88 0.00 46.80 2.92
457 519 8.252964 GTTTGACTTTAGACAAACCTCGATAT 57.747 34.615 19.88 0.00 46.80 1.63
458 520 7.827819 TTGACTTTAGACAAACCTCGATATG 57.172 36.000 0.00 0.00 0.00 1.78
459 521 6.931838 TGACTTTAGACAAACCTCGATATGT 58.068 36.000 0.00 0.00 0.00 2.29
460 522 8.058667 TGACTTTAGACAAACCTCGATATGTA 57.941 34.615 0.00 0.00 0.00 2.29
461 523 8.188799 TGACTTTAGACAAACCTCGATATGTAG 58.811 37.037 0.00 0.00 0.00 2.74
462 524 8.289939 ACTTTAGACAAACCTCGATATGTAGA 57.710 34.615 0.00 0.00 0.00 2.59
463 525 8.407064 ACTTTAGACAAACCTCGATATGTAGAG 58.593 37.037 0.00 0.00 0.00 2.43
464 526 7.876936 TTAGACAAACCTCGATATGTAGAGT 57.123 36.000 0.00 0.00 32.88 3.24
465 527 8.969260 TTAGACAAACCTCGATATGTAGAGTA 57.031 34.615 0.00 0.00 32.88 2.59
466 528 7.876936 AGACAAACCTCGATATGTAGAGTAA 57.123 36.000 0.00 0.00 32.88 2.24
467 529 8.289939 AGACAAACCTCGATATGTAGAGTAAA 57.710 34.615 0.00 0.00 32.88 2.01
468 530 8.746530 AGACAAACCTCGATATGTAGAGTAAAA 58.253 33.333 0.00 0.00 32.88 1.52
469 531 9.362539 GACAAACCTCGATATGTAGAGTAAAAA 57.637 33.333 0.00 0.00 32.88 1.94
470 532 9.367444 ACAAACCTCGATATGTAGAGTAAAAAG 57.633 33.333 0.00 0.00 32.88 2.27
471 533 9.582431 CAAACCTCGATATGTAGAGTAAAAAGA 57.418 33.333 0.00 0.00 32.88 2.52
474 536 9.583765 ACCTCGATATGTAGAGTAAAAAGAAAC 57.416 33.333 0.00 0.00 32.88 2.78
475 537 8.744011 CCTCGATATGTAGAGTAAAAAGAAACG 58.256 37.037 0.00 0.00 32.88 3.60
476 538 9.499585 CTCGATATGTAGAGTAAAAAGAAACGA 57.500 33.333 0.00 0.00 0.00 3.85
477 539 9.844790 TCGATATGTAGAGTAAAAAGAAACGAA 57.155 29.630 0.00 0.00 0.00 3.85
481 543 8.882415 ATGTAGAGTAAAAAGAAACGAAGTGA 57.118 30.769 0.00 0.00 45.00 3.41
482 544 8.348983 TGTAGAGTAAAAAGAAACGAAGTGAG 57.651 34.615 0.00 0.00 45.00 3.51
495 557 8.499162 AGAAACGAAGTGAGTATTTTGAAGATG 58.501 33.333 0.00 0.00 45.00 2.90
511 573 9.913310 TTTTGAAGATGGAAAGGGTTAAAATTT 57.087 25.926 0.00 0.00 0.00 1.82
522 584 6.032956 AGGGTTAAAATTTAAAAGAGGCCG 57.967 37.500 0.00 0.00 0.00 6.13
528 590 5.922739 AAATTTAAAAGAGGCCGCAAAAG 57.077 34.783 9.88 0.00 0.00 2.27
529 591 4.864704 ATTTAAAAGAGGCCGCAAAAGA 57.135 36.364 9.88 0.00 0.00 2.52
530 592 4.864704 TTTAAAAGAGGCCGCAAAAGAT 57.135 36.364 9.88 0.00 0.00 2.40
531 593 4.434713 TTAAAAGAGGCCGCAAAAGATC 57.565 40.909 9.88 0.00 0.00 2.75
532 594 1.177401 AAAGAGGCCGCAAAAGATCC 58.823 50.000 9.88 0.00 0.00 3.36
534 596 3.113386 GAGGCCGCAAAAGATCCGC 62.113 63.158 0.00 0.00 0.00 5.54
542 604 2.770532 GCAAAAGATCCGCGAGTAAAC 58.229 47.619 8.23 0.00 0.00 2.01
543 605 2.475685 GCAAAAGATCCGCGAGTAAACC 60.476 50.000 8.23 0.00 0.00 3.27
545 607 0.813184 AAGATCCGCGAGTAAACCGA 59.187 50.000 8.23 0.00 0.00 4.69
547 609 0.379669 GATCCGCGAGTAAACCGAGA 59.620 55.000 8.23 0.00 0.00 4.04
548 610 0.813184 ATCCGCGAGTAAACCGAGAA 59.187 50.000 8.23 0.00 0.00 2.87
549 611 0.597568 TCCGCGAGTAAACCGAGAAA 59.402 50.000 8.23 0.00 0.00 2.52
551 613 1.125566 CCGCGAGTAAACCGAGAAAAC 59.874 52.381 8.23 0.00 0.00 2.43
552 614 1.788308 CGCGAGTAAACCGAGAAAACA 59.212 47.619 0.00 0.00 0.00 2.83
553 615 2.219216 CGCGAGTAAACCGAGAAAACAA 59.781 45.455 0.00 0.00 0.00 2.83
555 617 3.964347 GCGAGTAAACCGAGAAAACAAAC 59.036 43.478 0.00 0.00 0.00 2.93
556 618 4.198584 CGAGTAAACCGAGAAAACAAACG 58.801 43.478 0.00 0.00 0.00 3.60
558 620 4.190772 AGTAAACCGAGAAAACAAACGGA 58.809 39.130 11.27 0.00 46.94 4.69
559 621 3.685836 AAACCGAGAAAACAAACGGAG 57.314 42.857 11.27 0.00 46.94 4.63
560 622 0.942252 ACCGAGAAAACAAACGGAGC 59.058 50.000 11.27 0.00 46.94 4.70
561 623 0.110823 CCGAGAAAACAAACGGAGCG 60.111 55.000 0.00 0.00 46.94 5.03
562 624 0.856641 CGAGAAAACAAACGGAGCGA 59.143 50.000 0.00 0.00 0.00 4.93
563 625 1.136611 CGAGAAAACAAACGGAGCGAG 60.137 52.381 0.00 0.00 0.00 5.03
564 626 1.194772 GAGAAAACAAACGGAGCGAGG 59.805 52.381 0.00 0.00 0.00 4.63
565 627 0.237498 GAAAACAAACGGAGCGAGGG 59.763 55.000 0.00 0.00 0.00 4.30
566 628 1.792118 AAAACAAACGGAGCGAGGGC 61.792 55.000 0.00 0.00 40.37 5.19
567 629 2.951475 AAACAAACGGAGCGAGGGCA 62.951 55.000 0.00 0.00 43.41 5.36
568 630 3.121030 CAAACGGAGCGAGGGCAG 61.121 66.667 0.00 0.00 43.41 4.85
569 631 3.626924 AAACGGAGCGAGGGCAGT 61.627 61.111 0.00 0.00 43.41 4.40
570 632 3.883744 AAACGGAGCGAGGGCAGTG 62.884 63.158 0.00 0.00 43.41 3.66
594 656 3.041940 GGAAGTGTCACGGGCGTG 61.042 66.667 0.00 0.00 46.64 5.34
607 669 1.007387 GGCGTGCCTTGAAAGTTGG 60.007 57.895 2.98 0.00 0.00 3.77
643 705 2.203771 CCGATCCCTCCCTCCGAAG 61.204 68.421 0.00 0.00 0.00 3.79
774 840 4.200283 CACTCGCCCGCCTCTCTC 62.200 72.222 0.00 0.00 0.00 3.20
780 850 3.157949 CCCGCCTCTCTCCCTTCC 61.158 72.222 0.00 0.00 0.00 3.46
783 853 2.131067 CGCCTCTCTCCCTTCCTCC 61.131 68.421 0.00 0.00 0.00 4.30
785 855 2.023532 CCTCTCTCCCTTCCTCCCT 58.976 63.158 0.00 0.00 0.00 4.20
786 856 0.341609 CCTCTCTCCCTTCCTCCCTT 59.658 60.000 0.00 0.00 0.00 3.95
787 857 1.691163 CCTCTCTCCCTTCCTCCCTTC 60.691 61.905 0.00 0.00 0.00 3.46
790 860 0.800239 TCTCCCTTCCTCCCTTCCTT 59.200 55.000 0.00 0.00 0.00 3.36
792 862 0.800239 TCCCTTCCTCCCTTCCTTCT 59.200 55.000 0.00 0.00 0.00 2.85
794 864 1.562008 CCCTTCCTCCCTTCCTTCTTC 59.438 57.143 0.00 0.00 0.00 2.87
810 880 2.108168 TCTTCCCTCCGTATTCACCAG 58.892 52.381 0.00 0.00 0.00 4.00
811 881 1.831736 CTTCCCTCCGTATTCACCAGT 59.168 52.381 0.00 0.00 0.00 4.00
812 882 1.481871 TCCCTCCGTATTCACCAGTC 58.518 55.000 0.00 0.00 0.00 3.51
813 883 1.191535 CCCTCCGTATTCACCAGTCA 58.808 55.000 0.00 0.00 0.00 3.41
814 884 1.134788 CCCTCCGTATTCACCAGTCAC 60.135 57.143 0.00 0.00 0.00 3.67
815 885 1.134788 CCTCCGTATTCACCAGTCACC 60.135 57.143 0.00 0.00 0.00 4.02
816 886 1.548719 CTCCGTATTCACCAGTCACCA 59.451 52.381 0.00 0.00 0.00 4.17
859 929 0.465460 GCCACCACCTCAAACTCACA 60.465 55.000 0.00 0.00 0.00 3.58
861 931 1.308998 CACCACCTCAAACTCACACC 58.691 55.000 0.00 0.00 0.00 4.16
864 934 0.884704 CACCTCAAACTCACACCCCG 60.885 60.000 0.00 0.00 0.00 5.73
865 935 1.052124 ACCTCAAACTCACACCCCGA 61.052 55.000 0.00 0.00 0.00 5.14
866 936 0.320771 CCTCAAACTCACACCCCGAG 60.321 60.000 0.00 0.00 36.53 4.63
867 937 0.393077 CTCAAACTCACACCCCGAGT 59.607 55.000 0.00 0.00 45.62 4.18
901 971 1.737201 GAGCCGAGCTTCCCTAGTC 59.263 63.158 0.00 0.00 39.88 2.59
902 972 1.740332 GAGCCGAGCTTCCCTAGTCC 61.740 65.000 0.00 0.00 39.88 3.85
903 973 1.758906 GCCGAGCTTCCCTAGTCCT 60.759 63.158 0.00 0.00 0.00 3.85
904 974 2.022240 GCCGAGCTTCCCTAGTCCTG 62.022 65.000 0.00 0.00 0.00 3.86
905 975 1.395826 CCGAGCTTCCCTAGTCCTGG 61.396 65.000 0.00 0.00 0.00 4.45
906 976 0.684805 CGAGCTTCCCTAGTCCTGGT 60.685 60.000 0.00 0.00 0.00 4.00
907 977 1.409802 CGAGCTTCCCTAGTCCTGGTA 60.410 57.143 0.00 0.00 0.00 3.25
908 978 2.312390 GAGCTTCCCTAGTCCTGGTAG 58.688 57.143 0.00 0.00 0.00 3.18
909 979 1.646977 AGCTTCCCTAGTCCTGGTAGT 59.353 52.381 0.00 0.00 0.00 2.73
964 1034 2.549754 CCAACTGTTTCAGTGCAGTAGG 59.450 50.000 3.12 0.08 44.62 3.18
965 1035 1.884235 ACTGTTTCAGTGCAGTAGGC 58.116 50.000 0.00 0.00 43.63 3.93
1110 1186 4.477975 CAGCTCGTCGACGACCCC 62.478 72.222 34.97 24.32 44.22 4.95
1263 1339 0.388907 TCAACACCTACGTAAGCGCC 60.389 55.000 2.29 0.00 42.83 6.53
1287 1367 0.385598 GCCGTTTCCGCTTCTGTTTC 60.386 55.000 0.00 0.00 0.00 2.78
1292 1372 0.951558 TTCCGCTTCTGTTTCTTGGC 59.048 50.000 0.00 0.00 0.00 4.52
1295 1375 0.239347 CGCTTCTGTTTCTTGGCTGG 59.761 55.000 0.00 0.00 0.00 4.85
1296 1376 1.322442 GCTTCTGTTTCTTGGCTGGT 58.678 50.000 0.00 0.00 0.00 4.00
1297 1377 1.683385 GCTTCTGTTTCTTGGCTGGTT 59.317 47.619 0.00 0.00 0.00 3.67
1298 1378 2.544486 GCTTCTGTTTCTTGGCTGGTTG 60.544 50.000 0.00 0.00 0.00 3.77
1299 1379 1.691196 TCTGTTTCTTGGCTGGTTGG 58.309 50.000 0.00 0.00 0.00 3.77
1300 1380 0.675633 CTGTTTCTTGGCTGGTTGGG 59.324 55.000 0.00 0.00 0.00 4.12
1303 1387 1.068588 GTTTCTTGGCTGGTTGGGTTC 59.931 52.381 0.00 0.00 0.00 3.62
1308 1392 2.258726 GGCTGGTTGGGTTCACGAC 61.259 63.158 0.00 0.00 0.00 4.34
1320 1404 0.952984 TTCACGACGCATGCATGGAA 60.953 50.000 27.34 17.34 0.00 3.53
1326 1410 2.491152 GCATGCATGGAACGGTGG 59.509 61.111 27.34 0.00 0.00 4.61
1327 1411 2.491152 CATGCATGGAACGGTGGC 59.509 61.111 19.40 0.00 0.00 5.01
1328 1412 2.048023 CATGCATGGAACGGTGGCT 61.048 57.895 19.40 0.00 0.00 4.75
1329 1413 2.048023 ATGCATGGAACGGTGGCTG 61.048 57.895 0.00 0.00 0.00 4.85
1330 1414 2.359850 GCATGGAACGGTGGCTGA 60.360 61.111 0.00 0.00 0.00 4.26
1338 1424 4.742201 CGGTGGCTGACTGACGGG 62.742 72.222 0.00 0.00 31.77 5.28
1369 1463 4.133796 GCAATGCAGGGGTTCCGC 62.134 66.667 0.00 0.00 38.33 5.54
1471 1565 3.292500 GAAGACGTCCGGGTCCACC 62.293 68.421 13.01 0.00 37.66 4.61
1528 1622 4.323477 TTCCCGCTGTTCCACCCG 62.323 66.667 0.00 0.00 0.00 5.28
1978 2072 4.057428 ACGACGTCCAGCAGCTCC 62.057 66.667 10.58 0.00 0.00 4.70
2321 2415 0.397941 ACTCACCTAGCAAGCAAGCA 59.602 50.000 3.19 0.00 36.85 3.91
2322 2416 1.202806 ACTCACCTAGCAAGCAAGCAA 60.203 47.619 3.19 0.00 36.85 3.91
2323 2417 1.467734 CTCACCTAGCAAGCAAGCAAG 59.532 52.381 3.19 0.00 36.85 4.01
2324 2418 0.109412 CACCTAGCAAGCAAGCAAGC 60.109 55.000 3.19 0.00 36.85 4.01
2325 2419 0.538057 ACCTAGCAAGCAAGCAAGCA 60.538 50.000 10.52 0.00 36.85 3.91
2326 2420 0.599558 CCTAGCAAGCAAGCAAGCAA 59.400 50.000 10.52 0.00 36.85 3.91
2327 2421 1.402456 CCTAGCAAGCAAGCAAGCAAG 60.402 52.381 10.52 0.00 36.85 4.01
2328 2422 0.038892 TAGCAAGCAAGCAAGCAAGC 60.039 50.000 10.52 6.16 36.99 4.01
2444 2542 2.160205 GTTAGTTTGTTGCTCCCTCCC 58.840 52.381 0.00 0.00 0.00 4.30
2445 2543 1.742308 TAGTTTGTTGCTCCCTCCCT 58.258 50.000 0.00 0.00 0.00 4.20
2446 2544 0.402121 AGTTTGTTGCTCCCTCCCTC 59.598 55.000 0.00 0.00 0.00 4.30
2447 2545 0.609406 GTTTGTTGCTCCCTCCCTCC 60.609 60.000 0.00 0.00 0.00 4.30
2448 2546 0.772124 TTTGTTGCTCCCTCCCTCCT 60.772 55.000 0.00 0.00 0.00 3.69
2449 2547 0.118346 TTGTTGCTCCCTCCCTCCTA 59.882 55.000 0.00 0.00 0.00 2.94
2458 2556 1.769465 CCCTCCCTCCTAAAGTTAGCC 59.231 57.143 0.00 0.00 0.00 3.93
2475 2573 2.604046 GCCAGTGCTTAGCTTAGCTA 57.396 50.000 23.89 10.21 41.76 3.32
2476 2574 2.478831 GCCAGTGCTTAGCTTAGCTAG 58.521 52.381 23.89 13.70 42.34 3.42
2477 2575 2.804933 GCCAGTGCTTAGCTTAGCTAGG 60.805 54.545 23.89 21.28 42.34 3.02
2478 2576 2.224161 CCAGTGCTTAGCTTAGCTAGGG 60.224 54.545 23.89 17.47 42.34 3.53
2490 2588 4.202070 GCTTAGCTAGGGTTCTGTCTGTAG 60.202 50.000 4.88 0.00 0.00 2.74
2558 2656 0.035439 AATCGAAGCCAATCCGGTGT 60.035 50.000 0.00 0.00 36.97 4.16
2583 2681 7.421530 TTTTTGTACAGTACTGCTCTGAATC 57.578 36.000 22.90 5.28 36.81 2.52
2584 2682 5.984695 TTGTACAGTACTGCTCTGAATCT 57.015 39.130 22.90 2.45 36.81 2.40
2585 2683 5.316327 TGTACAGTACTGCTCTGAATCTG 57.684 43.478 22.90 0.00 36.81 2.90
2586 2684 5.010282 TGTACAGTACTGCTCTGAATCTGA 58.990 41.667 22.90 0.00 36.81 3.27
2587 2685 5.654209 TGTACAGTACTGCTCTGAATCTGAT 59.346 40.000 22.90 0.96 36.81 2.90
2588 2686 6.828785 TGTACAGTACTGCTCTGAATCTGATA 59.171 38.462 22.90 0.00 36.81 2.15
2589 2687 6.782082 ACAGTACTGCTCTGAATCTGATAA 57.218 37.500 22.90 0.00 36.81 1.75
2590 2688 6.568869 ACAGTACTGCTCTGAATCTGATAAC 58.431 40.000 22.90 0.00 36.81 1.89
2591 2689 5.982516 CAGTACTGCTCTGAATCTGATAACC 59.017 44.000 10.54 0.00 35.20 2.85
2592 2690 5.658634 AGTACTGCTCTGAATCTGATAACCA 59.341 40.000 0.00 0.00 0.00 3.67
2593 2691 5.021033 ACTGCTCTGAATCTGATAACCAG 57.979 43.478 0.00 0.00 44.27 4.00
2594 2692 4.469227 ACTGCTCTGAATCTGATAACCAGT 59.531 41.667 11.67 7.19 43.38 4.00
2595 2693 5.046014 ACTGCTCTGAATCTGATAACCAGTT 60.046 40.000 11.67 0.00 43.38 3.16
2596 2694 5.809001 TGCTCTGAATCTGATAACCAGTTT 58.191 37.500 11.67 0.00 43.38 2.66
2597 2695 5.645067 TGCTCTGAATCTGATAACCAGTTTG 59.355 40.000 11.67 7.17 43.38 2.93
2598 2696 5.645497 GCTCTGAATCTGATAACCAGTTTGT 59.355 40.000 11.67 0.00 43.38 2.83
2599 2697 6.818644 GCTCTGAATCTGATAACCAGTTTGTA 59.181 38.462 11.67 0.00 43.38 2.41
2600 2698 7.010923 GCTCTGAATCTGATAACCAGTTTGTAG 59.989 40.741 11.67 5.75 43.38 2.74
2601 2699 7.907389 TCTGAATCTGATAACCAGTTTGTAGT 58.093 34.615 11.67 0.00 43.38 2.73
2604 2702 7.764443 TGAATCTGATAACCAGTTTGTAGTAGC 59.236 37.037 0.00 0.00 43.38 3.58
2607 2705 7.097192 TCTGATAACCAGTTTGTAGTAGCAAG 58.903 38.462 0.00 0.00 43.38 4.01
2608 2706 5.642063 TGATAACCAGTTTGTAGTAGCAAGC 59.358 40.000 0.00 0.00 0.00 4.01
2672 2770 2.747686 GGCAAGTCCGGGAAGTCA 59.252 61.111 0.00 0.00 0.00 3.41
2673 2771 1.376037 GGCAAGTCCGGGAAGTCAG 60.376 63.158 0.00 0.00 0.00 3.51
2674 2772 2.035442 GCAAGTCCGGGAAGTCAGC 61.035 63.158 0.00 0.00 0.00 4.26
2707 2819 7.142680 TCGATTTAAAATCGCTTTCTTTGGTT 58.857 30.769 0.00 0.00 40.95 3.67
2708 2820 7.114247 TCGATTTAAAATCGCTTTCTTTGGTTG 59.886 33.333 0.00 0.00 40.95 3.77
2709 2821 5.898630 TTAAAATCGCTTTCTTTGGTTGC 57.101 34.783 0.00 0.00 0.00 4.17
2710 2822 2.438868 AATCGCTTTCTTTGGTTGCC 57.561 45.000 0.00 0.00 0.00 4.52
2711 2823 1.620822 ATCGCTTTCTTTGGTTGCCT 58.379 45.000 0.00 0.00 0.00 4.75
2712 2824 1.398692 TCGCTTTCTTTGGTTGCCTT 58.601 45.000 0.00 0.00 0.00 4.35
2748 2860 1.815421 CGGCGAGTCAAAGATGGGG 60.815 63.158 0.00 0.00 0.00 4.96
2808 2920 2.390599 CGAGCCCATTGGTCACACG 61.391 63.158 1.20 0.00 41.69 4.49
2813 2925 1.282570 CCATTGGTCACACGCACAC 59.717 57.895 0.00 0.00 0.00 3.82
2814 2926 1.443322 CCATTGGTCACACGCACACA 61.443 55.000 0.00 0.00 0.00 3.72
2815 2927 0.316937 CATTGGTCACACGCACACAC 60.317 55.000 0.00 0.00 0.00 3.82
2816 2928 1.771073 ATTGGTCACACGCACACACG 61.771 55.000 0.00 0.00 39.50 4.49
2817 2929 4.293626 GGTCACACGCACACACGC 62.294 66.667 0.00 0.00 36.19 5.34
2818 2930 3.559344 GTCACACGCACACACGCA 61.559 61.111 0.00 0.00 36.19 5.24
2819 2931 3.559344 TCACACGCACACACGCAC 61.559 61.111 0.00 0.00 36.19 5.34
2832 2944 1.007734 ACGCACACACAGGTCGTAG 60.008 57.895 0.00 0.00 0.00 3.51
2861 2973 0.978385 CGAGTCTCGCTTGTTTCTCG 59.022 55.000 9.74 0.00 38.63 4.04
2862 2974 1.341606 GAGTCTCGCTTGTTTCTCGG 58.658 55.000 0.00 0.00 0.00 4.63
2863 2975 0.038159 AGTCTCGCTTGTTTCTCGGG 60.038 55.000 0.00 0.00 0.00 5.14
2864 2976 0.319641 GTCTCGCTTGTTTCTCGGGT 60.320 55.000 0.00 0.00 0.00 5.28
2865 2977 0.391597 TCTCGCTTGTTTCTCGGGTT 59.608 50.000 0.00 0.00 0.00 4.11
2866 2978 1.202604 TCTCGCTTGTTTCTCGGGTTT 60.203 47.619 0.00 0.00 0.00 3.27
2867 2979 1.194772 CTCGCTTGTTTCTCGGGTTTC 59.805 52.381 0.00 0.00 0.00 2.78
2868 2980 0.237498 CGCTTGTTTCTCGGGTTTCC 59.763 55.000 0.00 0.00 0.00 3.13
2869 2981 0.596577 GCTTGTTTCTCGGGTTTCCC 59.403 55.000 0.00 0.00 41.09 3.97
2879 2991 2.759560 GGTTTCCCGGGCATGCAT 60.760 61.111 18.49 0.00 0.00 3.96
2880 2992 2.358372 GGTTTCCCGGGCATGCATT 61.358 57.895 18.49 0.00 0.00 3.56
2881 2993 1.141665 GTTTCCCGGGCATGCATTC 59.858 57.895 18.49 7.43 0.00 2.67
2882 2994 2.057408 TTTCCCGGGCATGCATTCC 61.057 57.895 18.49 6.86 0.00 3.01
2883 2995 4.873810 TCCCGGGCATGCATTCCG 62.874 66.667 23.93 23.93 43.05 4.30
2886 2998 2.591429 CGGGCATGCATTCCGCTA 60.591 61.111 21.36 0.00 43.06 4.26
2887 2999 2.610694 CGGGCATGCATTCCGCTAG 61.611 63.158 21.36 5.17 43.06 3.42
2888 3000 2.641559 GGCATGCATTCCGCTAGC 59.358 61.111 21.36 4.06 43.06 3.42
2889 3001 2.641559 GCATGCATTCCGCTAGCC 59.358 61.111 14.21 0.00 43.06 3.93
2890 3002 2.912624 GCATGCATTCCGCTAGCCC 61.913 63.158 14.21 0.00 43.06 5.19
2891 3003 1.228063 CATGCATTCCGCTAGCCCT 60.228 57.895 9.66 0.00 43.06 5.19
2892 3004 0.035317 CATGCATTCCGCTAGCCCTA 59.965 55.000 9.66 0.00 43.06 3.53
2893 3005 0.322975 ATGCATTCCGCTAGCCCTAG 59.677 55.000 9.66 0.00 43.06 3.02
2894 3006 1.004440 GCATTCCGCTAGCCCTAGG 60.004 63.158 9.66 0.06 37.77 3.02
2895 3007 1.759459 GCATTCCGCTAGCCCTAGGT 61.759 60.000 9.66 0.00 37.77 3.08
2896 3008 0.759346 CATTCCGCTAGCCCTAGGTT 59.241 55.000 9.66 0.00 33.87 3.50
2897 3009 0.759346 ATTCCGCTAGCCCTAGGTTG 59.241 55.000 9.66 0.00 33.87 3.77
2898 3010 1.968050 TTCCGCTAGCCCTAGGTTGC 61.968 60.000 9.66 4.84 38.61 4.17
2899 3011 2.731571 CCGCTAGCCCTAGGTTGCA 61.732 63.158 9.66 0.00 41.46 4.08
2900 3012 1.227380 CGCTAGCCCTAGGTTGCAG 60.227 63.158 9.66 6.57 41.46 4.41
2901 3013 1.524849 GCTAGCCCTAGGTTGCAGC 60.525 63.158 8.29 12.07 41.12 5.25
2902 3014 1.147153 CTAGCCCTAGGTTGCAGCC 59.853 63.158 12.39 12.39 0.00 4.85
2903 3015 1.306997 TAGCCCTAGGTTGCAGCCT 60.307 57.895 26.30 26.30 42.43 4.58
2904 3016 0.031515 TAGCCCTAGGTTGCAGCCTA 60.032 55.000 25.72 25.72 39.94 3.93
2905 3017 1.153147 GCCCTAGGTTGCAGCCTAC 60.153 63.158 24.02 11.98 39.94 3.18
2906 3018 1.144057 CCCTAGGTTGCAGCCTACG 59.856 63.158 24.02 19.34 39.94 3.51
2907 3019 1.521681 CCTAGGTTGCAGCCTACGC 60.522 63.158 24.02 0.00 39.94 4.42
2908 3020 1.521681 CTAGGTTGCAGCCTACGCC 60.522 63.158 24.02 1.89 39.94 5.68
2909 3021 2.925162 CTAGGTTGCAGCCTACGCCC 62.925 65.000 24.02 0.00 39.94 6.13
2947 3059 2.124277 AAAACTACGCCCTCCATTCC 57.876 50.000 0.00 0.00 0.00 3.01
2948 3060 0.988832 AAACTACGCCCTCCATTCCA 59.011 50.000 0.00 0.00 0.00 3.53
2949 3061 0.988832 AACTACGCCCTCCATTCCAA 59.011 50.000 0.00 0.00 0.00 3.53
2950 3062 0.988832 ACTACGCCCTCCATTCCAAA 59.011 50.000 0.00 0.00 0.00 3.28
2951 3063 1.564348 ACTACGCCCTCCATTCCAAAT 59.436 47.619 0.00 0.00 0.00 2.32
2952 3064 2.025321 ACTACGCCCTCCATTCCAAATT 60.025 45.455 0.00 0.00 0.00 1.82
2953 3065 2.818751 ACGCCCTCCATTCCAAATTA 57.181 45.000 0.00 0.00 0.00 1.40
2954 3066 3.094484 ACGCCCTCCATTCCAAATTAA 57.906 42.857 0.00 0.00 0.00 1.40
2955 3067 3.642141 ACGCCCTCCATTCCAAATTAAT 58.358 40.909 0.00 0.00 0.00 1.40
2956 3068 4.030216 ACGCCCTCCATTCCAAATTAATT 58.970 39.130 0.00 0.00 0.00 1.40
2957 3069 5.205056 ACGCCCTCCATTCCAAATTAATTA 58.795 37.500 0.01 0.00 0.00 1.40
2958 3070 5.659079 ACGCCCTCCATTCCAAATTAATTAA 59.341 36.000 0.01 0.00 0.00 1.40
2959 3071 6.326323 ACGCCCTCCATTCCAAATTAATTAAT 59.674 34.615 4.81 4.81 0.00 1.40
2960 3072 6.868339 CGCCCTCCATTCCAAATTAATTAATC 59.132 38.462 11.08 0.00 0.00 1.75
2961 3073 7.255942 CGCCCTCCATTCCAAATTAATTAATCT 60.256 37.037 11.08 0.00 0.00 2.40
2962 3074 8.432013 GCCCTCCATTCCAAATTAATTAATCTT 58.568 33.333 11.08 5.70 0.00 2.40
2963 3075 9.987272 CCCTCCATTCCAAATTAATTAATCTTC 57.013 33.333 11.08 0.00 0.00 2.87
2991 3103 9.021807 AGTTTTGTCATGAATTGATTGATCTCT 57.978 29.630 0.00 0.00 36.54 3.10
3085 3197 6.395426 TTTTTATCATGGATCATGTGAGGC 57.605 37.500 7.63 0.00 41.98 4.70
3086 3198 4.987963 TTATCATGGATCATGTGAGGCT 57.012 40.909 7.63 0.00 41.98 4.58
3087 3199 6.438186 TTTATCATGGATCATGTGAGGCTA 57.562 37.500 7.63 0.00 41.98 3.93
3088 3200 4.987963 ATCATGGATCATGTGAGGCTAA 57.012 40.909 7.63 0.00 41.98 3.09
3089 3201 4.987963 TCATGGATCATGTGAGGCTAAT 57.012 40.909 7.63 0.00 41.98 1.73
3090 3202 5.314718 TCATGGATCATGTGAGGCTAATT 57.685 39.130 7.63 0.00 41.98 1.40
3091 3203 5.698104 TCATGGATCATGTGAGGCTAATTT 58.302 37.500 7.63 0.00 41.98 1.82
3092 3204 5.533528 TCATGGATCATGTGAGGCTAATTTG 59.466 40.000 7.63 0.00 41.98 2.32
3093 3205 4.209538 TGGATCATGTGAGGCTAATTTGG 58.790 43.478 0.00 0.00 0.00 3.28
3094 3206 4.210331 GGATCATGTGAGGCTAATTTGGT 58.790 43.478 0.00 0.00 0.00 3.67
3095 3207 4.037208 GGATCATGTGAGGCTAATTTGGTG 59.963 45.833 0.00 0.00 0.00 4.17
3096 3208 4.032960 TCATGTGAGGCTAATTTGGTGT 57.967 40.909 0.00 0.00 0.00 4.16
3097 3209 4.406456 TCATGTGAGGCTAATTTGGTGTT 58.594 39.130 0.00 0.00 0.00 3.32
3098 3210 4.218200 TCATGTGAGGCTAATTTGGTGTTG 59.782 41.667 0.00 0.00 0.00 3.33
3099 3211 3.561143 TGTGAGGCTAATTTGGTGTTGT 58.439 40.909 0.00 0.00 0.00 3.32
3100 3212 4.720046 TGTGAGGCTAATTTGGTGTTGTA 58.280 39.130 0.00 0.00 0.00 2.41
3101 3213 5.321102 TGTGAGGCTAATTTGGTGTTGTAT 58.679 37.500 0.00 0.00 0.00 2.29
3102 3214 6.477253 TGTGAGGCTAATTTGGTGTTGTATA 58.523 36.000 0.00 0.00 0.00 1.47
3103 3215 6.373216 TGTGAGGCTAATTTGGTGTTGTATAC 59.627 38.462 0.00 0.00 0.00 1.47
3104 3216 6.373216 GTGAGGCTAATTTGGTGTTGTATACA 59.627 38.462 0.08 0.08 0.00 2.29
3105 3217 7.067008 GTGAGGCTAATTTGGTGTTGTATACAT 59.933 37.037 6.36 0.00 39.39 2.29
3106 3218 7.613801 TGAGGCTAATTTGGTGTTGTATACATT 59.386 33.333 6.36 0.00 39.39 2.71
3107 3219 7.996385 AGGCTAATTTGGTGTTGTATACATTC 58.004 34.615 6.36 4.18 39.39 2.67
3108 3220 7.613801 AGGCTAATTTGGTGTTGTATACATTCA 59.386 33.333 6.36 6.77 39.39 2.57
3109 3221 8.413229 GGCTAATTTGGTGTTGTATACATTCAT 58.587 33.333 6.36 0.00 39.39 2.57
3117 3229 9.237187 TGGTGTTGTATACATTCATATGTTTGT 57.763 29.630 6.36 14.61 42.29 2.83
3135 3247 8.863872 ATGTTTGTATAGGCTTAGTCAAACTT 57.136 30.769 24.36 19.59 42.46 2.66
3136 3248 9.953565 ATGTTTGTATAGGCTTAGTCAAACTTA 57.046 29.630 24.36 14.49 42.46 2.24
3137 3249 9.431887 TGTTTGTATAGGCTTAGTCAAACTTAG 57.568 33.333 24.36 0.00 42.46 2.18
3138 3250 9.433153 GTTTGTATAGGCTTAGTCAAACTTAGT 57.567 33.333 20.57 0.00 40.38 2.24
3146 3258 9.000486 AGGCTTAGTCAAACTTAGTTTTATGAC 58.000 33.333 16.32 16.32 33.10 3.06
3147 3259 8.235226 GGCTTAGTCAAACTTAGTTTTATGACC 58.765 37.037 18.95 8.33 33.10 4.02
3148 3260 9.000486 GCTTAGTCAAACTTAGTTTTATGACCT 58.000 33.333 18.95 11.97 33.10 3.85
3152 3264 8.877195 AGTCAAACTTAGTTTTATGACCTAGGA 58.123 33.333 17.98 0.00 33.10 2.94
3153 3265 8.933807 GTCAAACTTAGTTTTATGACCTAGGAC 58.066 37.037 17.98 10.59 33.10 3.85
3154 3266 8.653191 TCAAACTTAGTTTTATGACCTAGGACA 58.347 33.333 17.98 17.08 33.10 4.02
3155 3267 9.280174 CAAACTTAGTTTTATGACCTAGGACAA 57.720 33.333 17.98 3.96 33.10 3.18
3156 3268 9.856162 AAACTTAGTTTTATGACCTAGGACAAA 57.144 29.630 17.98 9.87 31.10 2.83
3157 3269 9.856162 AACTTAGTTTTATGACCTAGGACAAAA 57.144 29.630 17.98 14.84 0.00 2.44
3158 3270 9.503399 ACTTAGTTTTATGACCTAGGACAAAAG 57.497 33.333 17.98 13.08 0.00 2.27
3159 3271 9.503399 CTTAGTTTTATGACCTAGGACAAAAGT 57.497 33.333 17.98 17.50 0.00 2.66
3171 3283 9.813446 ACCTAGGACAAAAGTATAACTATTTCG 57.187 33.333 17.98 0.00 0.00 3.46
3172 3284 9.813446 CCTAGGACAAAAGTATAACTATTTCGT 57.187 33.333 1.05 0.00 0.00 3.85
3175 3287 8.866956 AGGACAAAAGTATAACTATTTCGTTCG 58.133 33.333 0.00 0.00 0.00 3.95
3176 3288 8.650714 GGACAAAAGTATAACTATTTCGTTCGT 58.349 33.333 0.00 0.00 0.00 3.85
3183 3295 9.674824 AGTATAACTATTTCGTTCGTAATGGAG 57.325 33.333 12.67 4.63 0.00 3.86
3184 3296 7.941795 ATAACTATTTCGTTCGTAATGGAGG 57.058 36.000 12.67 2.90 0.00 4.30
3185 3297 4.690122 ACTATTTCGTTCGTAATGGAGGG 58.310 43.478 12.67 1.15 0.00 4.30
3186 3298 3.899052 ATTTCGTTCGTAATGGAGGGA 57.101 42.857 0.00 0.00 0.00 4.20
3187 3299 2.953466 TTCGTTCGTAATGGAGGGAG 57.047 50.000 0.00 0.00 0.00 4.30
3188 3300 1.843368 TCGTTCGTAATGGAGGGAGT 58.157 50.000 0.00 0.00 0.00 3.85
3189 3301 3.003394 TCGTTCGTAATGGAGGGAGTA 57.997 47.619 0.00 0.00 0.00 2.59
3190 3302 3.559069 TCGTTCGTAATGGAGGGAGTAT 58.441 45.455 0.00 0.00 0.00 2.12
3191 3303 3.956199 TCGTTCGTAATGGAGGGAGTATT 59.044 43.478 0.00 0.00 0.00 1.89
3192 3304 5.132502 TCGTTCGTAATGGAGGGAGTATTA 58.867 41.667 0.00 0.00 0.00 0.98
3193 3305 5.009010 TCGTTCGTAATGGAGGGAGTATTAC 59.991 44.000 0.00 0.00 35.16 1.89
3194 3306 5.221106 CGTTCGTAATGGAGGGAGTATTACA 60.221 44.000 0.00 0.00 37.21 2.41
3195 3307 6.516194 CGTTCGTAATGGAGGGAGTATTACAT 60.516 42.308 0.00 0.00 37.21 2.29
3196 3308 6.989155 TCGTAATGGAGGGAGTATTACATT 57.011 37.500 0.00 0.00 37.21 2.71
3197 3309 7.369551 TCGTAATGGAGGGAGTATTACATTT 57.630 36.000 0.00 0.00 37.21 2.32
3198 3310 7.798071 TCGTAATGGAGGGAGTATTACATTTT 58.202 34.615 0.00 0.00 37.21 1.82
3199 3311 7.929785 TCGTAATGGAGGGAGTATTACATTTTC 59.070 37.037 0.00 0.00 37.21 2.29
3200 3312 7.713507 CGTAATGGAGGGAGTATTACATTTTCA 59.286 37.037 0.00 0.00 37.21 2.69
3201 3313 7.881775 AATGGAGGGAGTATTACATTTTCAC 57.118 36.000 0.00 0.00 0.00 3.18
3202 3314 6.381498 TGGAGGGAGTATTACATTTTCACA 57.619 37.500 0.00 0.00 0.00 3.58
3203 3315 6.785076 TGGAGGGAGTATTACATTTTCACAA 58.215 36.000 0.00 0.00 0.00 3.33
3204 3316 7.410174 TGGAGGGAGTATTACATTTTCACAAT 58.590 34.615 0.00 0.00 0.00 2.71
3205 3317 8.553153 TGGAGGGAGTATTACATTTTCACAATA 58.447 33.333 0.00 0.00 0.00 1.90
3206 3318 9.057089 GGAGGGAGTATTACATTTTCACAATAG 57.943 37.037 0.00 0.00 0.00 1.73
3207 3319 9.614792 GAGGGAGTATTACATTTTCACAATAGT 57.385 33.333 0.00 0.00 0.00 2.12
3236 3348 9.528489 TTTCCAAAATCTATATTATACCTGCCC 57.472 33.333 0.00 0.00 0.00 5.36
3237 3349 7.335627 TCCAAAATCTATATTATACCTGCCCG 58.664 38.462 0.00 0.00 0.00 6.13
3238 3350 6.038271 CCAAAATCTATATTATACCTGCCCGC 59.962 42.308 0.00 0.00 0.00 6.13
3239 3351 4.957684 ATCTATATTATACCTGCCCGCC 57.042 45.455 0.00 0.00 0.00 6.13
3240 3352 2.691526 TCTATATTATACCTGCCCGCCG 59.308 50.000 0.00 0.00 0.00 6.46
3241 3353 0.107848 ATATTATACCTGCCCGCCGC 60.108 55.000 0.00 0.00 38.31 6.53
3242 3354 1.189524 TATTATACCTGCCCGCCGCT 61.190 55.000 0.00 0.00 38.78 5.52
3243 3355 2.052047 ATTATACCTGCCCGCCGCTT 62.052 55.000 0.00 0.00 38.78 4.68
3244 3356 2.653953 TTATACCTGCCCGCCGCTTC 62.654 60.000 0.00 0.00 38.78 3.86
3252 3364 4.717629 CCGCCGCTTCTGACGTGA 62.718 66.667 0.00 0.00 0.00 4.35
3253 3365 3.175240 CGCCGCTTCTGACGTGAG 61.175 66.667 0.00 0.00 0.00 3.51
3254 3366 2.258591 GCCGCTTCTGACGTGAGA 59.741 61.111 0.00 0.00 0.00 3.27
3255 3367 2.089349 GCCGCTTCTGACGTGAGAC 61.089 63.158 3.51 0.00 0.00 3.36
3256 3368 1.285950 CCGCTTCTGACGTGAGACA 59.714 57.895 3.51 0.00 0.00 3.41
3257 3369 0.318699 CCGCTTCTGACGTGAGACAA 60.319 55.000 3.51 0.00 34.95 3.18
3258 3370 1.487482 CGCTTCTGACGTGAGACAAA 58.513 50.000 3.51 0.00 34.95 2.83
3259 3371 2.061773 CGCTTCTGACGTGAGACAAAT 58.938 47.619 3.51 0.00 34.95 2.32
3260 3372 2.091277 CGCTTCTGACGTGAGACAAATC 59.909 50.000 3.51 0.00 34.95 2.17
3261 3373 3.321497 GCTTCTGACGTGAGACAAATCT 58.679 45.455 3.51 0.00 38.15 2.40
3262 3374 3.743396 GCTTCTGACGTGAGACAAATCTT 59.257 43.478 3.51 0.00 34.34 2.40
3263 3375 4.212214 GCTTCTGACGTGAGACAAATCTTT 59.788 41.667 3.51 0.00 34.34 2.52
3264 3376 5.613577 GCTTCTGACGTGAGACAAATCTTTC 60.614 44.000 3.51 0.00 34.34 2.62
3265 3377 3.981416 TCTGACGTGAGACAAATCTTTCG 59.019 43.478 0.00 0.00 34.34 3.46
3266 3378 3.713288 TGACGTGAGACAAATCTTTCGT 58.287 40.909 0.00 7.19 42.73 3.85
3267 3379 3.489416 TGACGTGAGACAAATCTTTCGTG 59.511 43.478 0.00 0.00 41.31 4.35
3268 3380 2.221055 ACGTGAGACAAATCTTTCGTGC 59.779 45.455 0.00 0.00 40.45 5.34
3269 3381 2.411547 CGTGAGACAAATCTTTCGTGCC 60.412 50.000 0.00 0.00 34.34 5.01
3270 3382 2.808543 GTGAGACAAATCTTTCGTGCCT 59.191 45.455 0.00 0.00 34.34 4.75
3271 3383 3.067106 TGAGACAAATCTTTCGTGCCTC 58.933 45.455 0.00 0.00 34.34 4.70
3272 3384 2.069273 AGACAAATCTTTCGTGCCTCG 58.931 47.619 0.00 0.00 41.41 4.63
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 3.555139 AGTACTAGTAGCAGCGTACGAAG 59.445 47.826 21.65 11.32 37.78 3.79
14 15 5.370679 ACCTCTTCTAGTACTAGTAGCAGC 58.629 45.833 25.58 0.00 32.65 5.25
20 21 5.177326 CACGTGACCTCTTCTAGTACTAGT 58.823 45.833 25.58 9.50 34.84 2.57
21 22 4.034279 GCACGTGACCTCTTCTAGTACTAG 59.966 50.000 22.23 21.87 34.56 2.57
22 23 3.937706 GCACGTGACCTCTTCTAGTACTA 59.062 47.826 22.23 1.89 0.00 1.82
23 24 2.748532 GCACGTGACCTCTTCTAGTACT 59.251 50.000 22.23 0.00 0.00 2.73
24 25 2.475852 CGCACGTGACCTCTTCTAGTAC 60.476 54.545 22.23 0.00 0.00 2.73
25 26 1.736126 CGCACGTGACCTCTTCTAGTA 59.264 52.381 22.23 0.00 0.00 1.82
26 27 0.522180 CGCACGTGACCTCTTCTAGT 59.478 55.000 22.23 0.00 0.00 2.57
149 155 4.489523 CGATCGCTCTTTTCTTTTCTCGTC 60.490 45.833 0.26 0.00 0.00 4.20
172 178 4.096081 CAGTCTTGGAAGCATCTCAAATCC 59.904 45.833 0.00 0.00 0.00 3.01
208 214 3.864686 CATTTCGCGCCGGACAGG 61.865 66.667 5.05 0.00 44.97 4.00
212 218 1.355796 CTTGTACATTTCGCGCCGGA 61.356 55.000 5.05 0.00 0.00 5.14
223 229 6.548321 TCAAAGTGGGAAATACCTTGTACAT 58.452 36.000 0.00 0.00 38.98 2.29
224 230 5.942961 TCAAAGTGGGAAATACCTTGTACA 58.057 37.500 0.00 0.00 38.98 2.90
225 231 7.462571 AATCAAAGTGGGAAATACCTTGTAC 57.537 36.000 0.00 0.00 38.98 2.90
235 241 3.462021 CGCCAAAAATCAAAGTGGGAAA 58.538 40.909 0.00 0.00 0.00 3.13
237 243 1.342819 CCGCCAAAAATCAAAGTGGGA 59.657 47.619 0.00 0.00 0.00 4.37
238 244 1.342819 TCCGCCAAAAATCAAAGTGGG 59.657 47.619 0.00 0.00 0.00 4.61
239 245 2.810439 TCCGCCAAAAATCAAAGTGG 57.190 45.000 0.00 0.00 0.00 4.00
240 246 5.476752 TTTTTCCGCCAAAAATCAAAGTG 57.523 34.783 0.46 0.00 38.76 3.16
241 247 4.574421 CCTTTTTCCGCCAAAAATCAAAGT 59.426 37.500 4.31 0.00 42.02 2.66
252 314 2.281900 CGACCCCTTTTTCCGCCA 60.282 61.111 0.00 0.00 0.00 5.69
254 316 3.060000 CCCGACCCCTTTTTCCGC 61.060 66.667 0.00 0.00 0.00 5.54
266 328 5.970592 AGTATTTCCTTTACTACACCCGAC 58.029 41.667 0.00 0.00 0.00 4.79
267 329 5.127682 GGAGTATTTCCTTTACTACACCCGA 59.872 44.000 0.00 0.00 43.16 5.14
268 330 5.354767 GGAGTATTTCCTTTACTACACCCG 58.645 45.833 0.00 0.00 43.16 5.28
286 348 6.484308 CGGAGTAAAAAGAAACAAAGGGAGTA 59.516 38.462 0.00 0.00 0.00 2.59
287 349 5.298527 CGGAGTAAAAAGAAACAAAGGGAGT 59.701 40.000 0.00 0.00 0.00 3.85
288 350 5.298527 ACGGAGTAAAAAGAAACAAAGGGAG 59.701 40.000 0.00 0.00 41.94 4.30
289 351 5.195185 ACGGAGTAAAAAGAAACAAAGGGA 58.805 37.500 0.00 0.00 41.94 4.20
290 352 5.509716 ACGGAGTAAAAAGAAACAAAGGG 57.490 39.130 0.00 0.00 41.94 3.95
324 386 2.229302 CGGAGTAAAATCCCCGCAAAAA 59.771 45.455 0.00 0.00 35.82 1.94
325 387 1.813786 CGGAGTAAAATCCCCGCAAAA 59.186 47.619 0.00 0.00 35.82 2.44
326 388 1.271488 ACGGAGTAAAATCCCCGCAAA 60.271 47.619 0.00 0.00 45.29 3.68
327 389 0.325602 ACGGAGTAAAATCCCCGCAA 59.674 50.000 0.00 0.00 45.29 4.85
328 390 1.193323 TACGGAGTAAAATCCCCGCA 58.807 50.000 0.00 0.00 45.29 5.69
329 391 4.948257 ACGGAGTAAAATCCCCGC 57.052 55.556 0.00 0.00 45.29 6.13
341 403 8.744008 ACTTATGACAAATCGAATATACGGAG 57.256 34.615 0.00 0.00 0.00 4.63
342 404 8.354426 TGACTTATGACAAATCGAATATACGGA 58.646 33.333 0.00 0.00 0.00 4.69
343 405 8.515473 TGACTTATGACAAATCGAATATACGG 57.485 34.615 0.00 0.00 0.00 4.02
402 464 9.840427 CGATTTCTTTTGTAGATGTTGGTATTT 57.160 29.630 0.00 0.00 31.54 1.40
403 465 9.226606 TCGATTTCTTTTGTAGATGTTGGTATT 57.773 29.630 0.00 0.00 31.54 1.89
404 466 8.786826 TCGATTTCTTTTGTAGATGTTGGTAT 57.213 30.769 0.00 0.00 31.54 2.73
405 467 7.333423 CCTCGATTTCTTTTGTAGATGTTGGTA 59.667 37.037 0.00 0.00 31.54 3.25
406 468 6.149474 CCTCGATTTCTTTTGTAGATGTTGGT 59.851 38.462 0.00 0.00 31.54 3.67
407 469 6.403636 CCCTCGATTTCTTTTGTAGATGTTGG 60.404 42.308 0.00 0.00 31.54 3.77
408 470 6.149474 ACCCTCGATTTCTTTTGTAGATGTTG 59.851 38.462 0.00 0.00 31.54 3.33
409 471 6.238648 ACCCTCGATTTCTTTTGTAGATGTT 58.761 36.000 0.00 0.00 31.54 2.71
410 472 5.805728 ACCCTCGATTTCTTTTGTAGATGT 58.194 37.500 0.00 0.00 31.54 3.06
411 473 6.743575 AACCCTCGATTTCTTTTGTAGATG 57.256 37.500 0.00 0.00 31.54 2.90
412 474 6.940298 TCAAACCCTCGATTTCTTTTGTAGAT 59.060 34.615 0.00 0.00 31.54 1.98
413 475 6.204108 GTCAAACCCTCGATTTCTTTTGTAGA 59.796 38.462 0.00 0.00 0.00 2.59
414 476 6.204882 AGTCAAACCCTCGATTTCTTTTGTAG 59.795 38.462 0.00 0.00 0.00 2.74
415 477 6.059484 AGTCAAACCCTCGATTTCTTTTGTA 58.941 36.000 0.00 0.00 0.00 2.41
416 478 4.887655 AGTCAAACCCTCGATTTCTTTTGT 59.112 37.500 0.00 0.00 0.00 2.83
417 479 5.438761 AGTCAAACCCTCGATTTCTTTTG 57.561 39.130 0.00 0.00 0.00 2.44
418 480 6.465439 AAAGTCAAACCCTCGATTTCTTTT 57.535 33.333 0.00 0.00 0.00 2.27
419 481 6.996282 TCTAAAGTCAAACCCTCGATTTCTTT 59.004 34.615 0.00 0.00 0.00 2.52
420 482 6.427242 GTCTAAAGTCAAACCCTCGATTTCTT 59.573 38.462 0.00 0.00 0.00 2.52
421 483 5.932883 GTCTAAAGTCAAACCCTCGATTTCT 59.067 40.000 0.00 0.00 0.00 2.52
422 484 5.699458 TGTCTAAAGTCAAACCCTCGATTTC 59.301 40.000 0.00 0.00 0.00 2.17
423 485 5.617252 TGTCTAAAGTCAAACCCTCGATTT 58.383 37.500 0.00 0.00 0.00 2.17
424 486 5.223449 TGTCTAAAGTCAAACCCTCGATT 57.777 39.130 0.00 0.00 0.00 3.34
425 487 4.884668 TGTCTAAAGTCAAACCCTCGAT 57.115 40.909 0.00 0.00 0.00 3.59
426 488 4.675976 TTGTCTAAAGTCAAACCCTCGA 57.324 40.909 0.00 0.00 0.00 4.04
427 489 5.091910 GTTTGTCTAAAGTCAAACCCTCG 57.908 43.478 16.87 0.00 43.31 4.63
432 494 5.978934 TCGAGGTTTGTCTAAAGTCAAAC 57.021 39.130 18.49 18.49 46.05 2.93
433 495 7.876068 ACATATCGAGGTTTGTCTAAAGTCAAA 59.124 33.333 0.00 0.00 32.37 2.69
434 496 7.383687 ACATATCGAGGTTTGTCTAAAGTCAA 58.616 34.615 0.00 0.00 0.00 3.18
435 497 6.931838 ACATATCGAGGTTTGTCTAAAGTCA 58.068 36.000 0.00 0.00 0.00 3.41
436 498 8.404000 TCTACATATCGAGGTTTGTCTAAAGTC 58.596 37.037 0.00 0.00 0.00 3.01
437 499 8.289939 TCTACATATCGAGGTTTGTCTAAAGT 57.710 34.615 0.00 0.00 0.00 2.66
438 500 8.407064 ACTCTACATATCGAGGTTTGTCTAAAG 58.593 37.037 0.00 0.00 0.00 1.85
439 501 8.289939 ACTCTACATATCGAGGTTTGTCTAAA 57.710 34.615 0.00 0.00 0.00 1.85
440 502 7.876936 ACTCTACATATCGAGGTTTGTCTAA 57.123 36.000 0.00 0.00 0.00 2.10
441 503 8.969260 TTACTCTACATATCGAGGTTTGTCTA 57.031 34.615 0.00 0.00 0.00 2.59
442 504 7.876936 TTACTCTACATATCGAGGTTTGTCT 57.123 36.000 0.00 0.00 0.00 3.41
443 505 8.922058 TTTTACTCTACATATCGAGGTTTGTC 57.078 34.615 0.00 0.00 0.00 3.18
444 506 9.367444 CTTTTTACTCTACATATCGAGGTTTGT 57.633 33.333 0.00 0.00 0.00 2.83
445 507 9.582431 TCTTTTTACTCTACATATCGAGGTTTG 57.418 33.333 0.00 0.00 0.00 2.93
448 510 9.583765 GTTTCTTTTTACTCTACATATCGAGGT 57.416 33.333 0.00 0.00 0.00 3.85
449 511 8.744011 CGTTTCTTTTTACTCTACATATCGAGG 58.256 37.037 0.00 0.00 0.00 4.63
450 512 9.499585 TCGTTTCTTTTTACTCTACATATCGAG 57.500 33.333 0.00 0.00 0.00 4.04
451 513 9.844790 TTCGTTTCTTTTTACTCTACATATCGA 57.155 29.630 0.00 0.00 0.00 3.59
455 517 9.970395 TCACTTCGTTTCTTTTTACTCTACATA 57.030 29.630 0.00 0.00 0.00 2.29
456 518 8.882415 TCACTTCGTTTCTTTTTACTCTACAT 57.118 30.769 0.00 0.00 0.00 2.29
457 519 7.977853 ACTCACTTCGTTTCTTTTTACTCTACA 59.022 33.333 0.00 0.00 0.00 2.74
458 520 8.350238 ACTCACTTCGTTTCTTTTTACTCTAC 57.650 34.615 0.00 0.00 0.00 2.59
460 522 9.543783 AATACTCACTTCGTTTCTTTTTACTCT 57.456 29.630 0.00 0.00 0.00 3.24
465 527 9.849166 TTCAAAATACTCACTTCGTTTCTTTTT 57.151 25.926 0.00 0.00 0.00 1.94
466 528 9.503427 CTTCAAAATACTCACTTCGTTTCTTTT 57.497 29.630 0.00 0.00 0.00 2.27
467 529 8.889717 TCTTCAAAATACTCACTTCGTTTCTTT 58.110 29.630 0.00 0.00 0.00 2.52
468 530 8.433421 TCTTCAAAATACTCACTTCGTTTCTT 57.567 30.769 0.00 0.00 0.00 2.52
469 531 8.499162 CATCTTCAAAATACTCACTTCGTTTCT 58.501 33.333 0.00 0.00 0.00 2.52
470 532 7.746475 CCATCTTCAAAATACTCACTTCGTTTC 59.254 37.037 0.00 0.00 0.00 2.78
471 533 7.444183 TCCATCTTCAAAATACTCACTTCGTTT 59.556 33.333 0.00 0.00 0.00 3.60
472 534 6.934645 TCCATCTTCAAAATACTCACTTCGTT 59.065 34.615 0.00 0.00 0.00 3.85
473 535 6.464222 TCCATCTTCAAAATACTCACTTCGT 58.536 36.000 0.00 0.00 0.00 3.85
474 536 6.968131 TCCATCTTCAAAATACTCACTTCG 57.032 37.500 0.00 0.00 0.00 3.79
475 537 8.239998 CCTTTCCATCTTCAAAATACTCACTTC 58.760 37.037 0.00 0.00 0.00 3.01
476 538 7.177392 CCCTTTCCATCTTCAAAATACTCACTT 59.823 37.037 0.00 0.00 0.00 3.16
477 539 6.660949 CCCTTTCCATCTTCAAAATACTCACT 59.339 38.462 0.00 0.00 0.00 3.41
478 540 6.434340 ACCCTTTCCATCTTCAAAATACTCAC 59.566 38.462 0.00 0.00 0.00 3.51
479 541 6.552008 ACCCTTTCCATCTTCAAAATACTCA 58.448 36.000 0.00 0.00 0.00 3.41
480 542 7.468141 AACCCTTTCCATCTTCAAAATACTC 57.532 36.000 0.00 0.00 0.00 2.59
481 543 8.950007 TTAACCCTTTCCATCTTCAAAATACT 57.050 30.769 0.00 0.00 0.00 2.12
482 544 9.990360 TTTTAACCCTTTCCATCTTCAAAATAC 57.010 29.630 0.00 0.00 0.00 1.89
495 557 7.389607 GGCCTCTTTTAAATTTTAACCCTTTCC 59.610 37.037 0.00 0.00 0.00 3.13
509 571 4.321675 GGATCTTTTGCGGCCTCTTTTAAA 60.322 41.667 0.00 0.00 0.00 1.52
510 572 3.192633 GGATCTTTTGCGGCCTCTTTTAA 59.807 43.478 0.00 0.00 0.00 1.52
511 573 2.752903 GGATCTTTTGCGGCCTCTTTTA 59.247 45.455 0.00 0.00 0.00 1.52
512 574 1.546029 GGATCTTTTGCGGCCTCTTTT 59.454 47.619 0.00 0.00 0.00 2.27
513 575 1.177401 GGATCTTTTGCGGCCTCTTT 58.823 50.000 0.00 0.00 0.00 2.52
514 576 1.026718 CGGATCTTTTGCGGCCTCTT 61.027 55.000 0.00 0.00 35.23 2.85
515 577 1.450312 CGGATCTTTTGCGGCCTCT 60.450 57.895 0.00 0.00 35.23 3.69
522 584 2.475685 GGTTTACTCGCGGATCTTTTGC 60.476 50.000 6.13 0.00 0.00 3.68
528 590 0.379669 TCTCGGTTTACTCGCGGATC 59.620 55.000 6.13 0.00 0.00 3.36
529 591 0.813184 TTCTCGGTTTACTCGCGGAT 59.187 50.000 6.13 0.00 0.00 4.18
530 592 0.597568 TTTCTCGGTTTACTCGCGGA 59.402 50.000 6.13 0.00 0.00 5.54
531 593 1.125566 GTTTTCTCGGTTTACTCGCGG 59.874 52.381 6.13 0.00 0.00 6.46
532 594 1.788308 TGTTTTCTCGGTTTACTCGCG 59.212 47.619 0.00 0.00 0.00 5.87
534 596 4.198584 CGTTTGTTTTCTCGGTTTACTCG 58.801 43.478 0.00 0.00 0.00 4.18
535 597 4.270808 TCCGTTTGTTTTCTCGGTTTACTC 59.729 41.667 0.00 0.00 42.95 2.59
536 598 4.190772 TCCGTTTGTTTTCTCGGTTTACT 58.809 39.130 0.00 0.00 42.95 2.24
539 601 2.223409 GCTCCGTTTGTTTTCTCGGTTT 60.223 45.455 0.00 0.00 42.95 3.27
540 602 1.332686 GCTCCGTTTGTTTTCTCGGTT 59.667 47.619 0.00 0.00 42.95 4.44
541 603 0.942252 GCTCCGTTTGTTTTCTCGGT 59.058 50.000 0.00 0.00 42.95 4.69
542 604 0.110823 CGCTCCGTTTGTTTTCTCGG 60.111 55.000 0.00 0.00 43.65 4.63
543 605 0.856641 TCGCTCCGTTTGTTTTCTCG 59.143 50.000 0.00 0.00 0.00 4.04
545 607 1.226746 CCTCGCTCCGTTTGTTTTCT 58.773 50.000 0.00 0.00 0.00 2.52
547 609 1.792118 GCCCTCGCTCCGTTTGTTTT 61.792 55.000 0.00 0.00 0.00 2.43
548 610 2.258726 GCCCTCGCTCCGTTTGTTT 61.259 57.895 0.00 0.00 0.00 2.83
549 611 2.668550 GCCCTCGCTCCGTTTGTT 60.669 61.111 0.00 0.00 0.00 2.83
551 613 3.121030 CTGCCCTCGCTCCGTTTG 61.121 66.667 0.00 0.00 35.36 2.93
552 614 3.626924 ACTGCCCTCGCTCCGTTT 61.627 61.111 0.00 0.00 35.36 3.60
553 615 4.379243 CACTGCCCTCGCTCCGTT 62.379 66.667 0.00 0.00 35.36 4.44
566 628 3.052082 CACTTCCGCCAGCCACTG 61.052 66.667 0.00 0.00 0.00 3.66
567 629 3.537206 GACACTTCCGCCAGCCACT 62.537 63.158 0.00 0.00 0.00 4.00
568 630 3.050275 GACACTTCCGCCAGCCAC 61.050 66.667 0.00 0.00 0.00 5.01
569 631 3.555324 TGACACTTCCGCCAGCCA 61.555 61.111 0.00 0.00 0.00 4.75
570 632 3.050275 GTGACACTTCCGCCAGCC 61.050 66.667 0.00 0.00 0.00 4.85
571 633 3.414700 CGTGACACTTCCGCCAGC 61.415 66.667 3.68 0.00 0.00 4.85
572 634 2.738521 CCGTGACACTTCCGCCAG 60.739 66.667 3.68 0.00 0.00 4.85
591 653 2.154462 AGATCCAACTTTCAAGGCACG 58.846 47.619 0.00 0.00 0.00 5.34
592 654 3.149196 TGAGATCCAACTTTCAAGGCAC 58.851 45.455 0.00 0.00 0.00 5.01
594 656 4.074970 TCTTGAGATCCAACTTTCAAGGC 58.925 43.478 15.99 0.00 44.07 4.35
607 669 2.588027 GGGAGTTCCGTCTTGAGATC 57.412 55.000 0.00 0.00 36.71 2.75
643 705 0.531974 TGTCTGTCTGGGTGTTTCGC 60.532 55.000 0.00 0.00 0.00 4.70
770 836 0.341609 AGGAAGGGAGGAAGGGAGAG 59.658 60.000 0.00 0.00 0.00 3.20
771 837 0.800239 AAGGAAGGGAGGAAGGGAGA 59.200 55.000 0.00 0.00 0.00 3.71
774 840 1.562008 GAAGAAGGAAGGGAGGAAGGG 59.438 57.143 0.00 0.00 0.00 3.95
778 848 0.800239 AGGGAAGAAGGAAGGGAGGA 59.200 55.000 0.00 0.00 0.00 3.71
780 850 1.208706 GGAGGGAAGAAGGAAGGGAG 58.791 60.000 0.00 0.00 0.00 4.30
783 853 1.861982 TACGGAGGGAAGAAGGAAGG 58.138 55.000 0.00 0.00 0.00 3.46
785 855 3.197116 GTGAATACGGAGGGAAGAAGGAA 59.803 47.826 0.00 0.00 0.00 3.36
786 856 2.764572 GTGAATACGGAGGGAAGAAGGA 59.235 50.000 0.00 0.00 0.00 3.36
787 857 2.158943 GGTGAATACGGAGGGAAGAAGG 60.159 54.545 0.00 0.00 0.00 3.46
790 860 2.108168 CTGGTGAATACGGAGGGAAGA 58.892 52.381 0.00 0.00 0.00 2.87
792 862 1.829222 GACTGGTGAATACGGAGGGAA 59.171 52.381 0.00 0.00 0.00 3.97
794 864 1.134788 GTGACTGGTGAATACGGAGGG 60.135 57.143 0.00 0.00 0.00 4.30
827 897 0.251165 TGGTGGCTCTGGCTTTAACC 60.251 55.000 0.00 0.00 38.73 2.85
834 904 2.697147 TTTGAGGTGGTGGCTCTGGC 62.697 60.000 0.00 0.00 37.82 4.85
859 929 3.008375 GGGTTTTAACTCTAACTCGGGGT 59.992 47.826 0.00 0.00 0.00 4.95
861 931 3.603532 GGGGTTTTAACTCTAACTCGGG 58.396 50.000 0.00 0.00 0.00 5.14
864 934 3.931468 GCTCGGGGTTTTAACTCTAACTC 59.069 47.826 0.00 0.00 0.00 3.01
865 935 3.307269 GGCTCGGGGTTTTAACTCTAACT 60.307 47.826 0.00 0.00 0.00 2.24
866 936 3.005554 GGCTCGGGGTTTTAACTCTAAC 58.994 50.000 0.00 0.00 0.00 2.34
867 937 2.354003 CGGCTCGGGGTTTTAACTCTAA 60.354 50.000 0.00 0.00 0.00 2.10
869 939 0.036671 CGGCTCGGGGTTTTAACTCT 60.037 55.000 0.00 0.00 0.00 3.24
901 971 3.170717 TCTAAACCACTCCACTACCAGG 58.829 50.000 0.00 0.00 0.00 4.45
902 972 4.884668 TTCTAAACCACTCCACTACCAG 57.115 45.455 0.00 0.00 0.00 4.00
903 973 4.964593 GTTTCTAAACCACTCCACTACCA 58.035 43.478 0.00 0.00 32.82 3.25
1185 1261 3.781307 TTGGGGAGGATGTCGCGG 61.781 66.667 6.13 0.00 39.06 6.46
1271 1351 2.858646 GCCAAGAAACAGAAGCGGAAAC 60.859 50.000 0.00 0.00 0.00 2.78
1287 1367 1.795170 CGTGAACCCAACCAGCCAAG 61.795 60.000 0.00 0.00 0.00 3.61
1292 1372 2.604174 GCGTCGTGAACCCAACCAG 61.604 63.158 0.00 0.00 0.00 4.00
1295 1375 1.206578 CATGCGTCGTGAACCCAAC 59.793 57.895 0.00 0.00 0.00 3.77
1296 1376 2.612567 GCATGCGTCGTGAACCCAA 61.613 57.895 0.00 0.00 0.00 4.12
1297 1377 3.047280 GCATGCGTCGTGAACCCA 61.047 61.111 0.00 0.00 0.00 4.51
1298 1378 2.398554 ATGCATGCGTCGTGAACCC 61.399 57.895 14.09 0.00 0.00 4.11
1299 1379 1.226101 CATGCATGCGTCGTGAACC 60.226 57.895 14.93 0.00 0.00 3.62
1300 1380 1.226101 CCATGCATGCGTCGTGAAC 60.226 57.895 21.69 0.00 0.00 3.18
1303 1387 1.226101 GTTCCATGCATGCGTCGTG 60.226 57.895 21.69 6.60 0.00 4.35
1308 1392 2.100797 CACCGTTCCATGCATGCG 59.899 61.111 21.69 18.20 0.00 4.73
1320 1404 3.991051 CCGTCAGTCAGCCACCGT 61.991 66.667 0.00 0.00 0.00 4.83
1326 1410 2.357517 CACACCCCGTCAGTCAGC 60.358 66.667 0.00 0.00 0.00 4.26
1327 1411 2.343758 CCACACCCCGTCAGTCAG 59.656 66.667 0.00 0.00 0.00 3.51
1328 1412 3.936203 GCCACACCCCGTCAGTCA 61.936 66.667 0.00 0.00 0.00 3.41
1329 1413 2.748058 ATTGCCACACCCCGTCAGTC 62.748 60.000 0.00 0.00 0.00 3.51
1330 1414 2.829384 ATTGCCACACCCCGTCAGT 61.829 57.895 0.00 0.00 0.00 3.41
1338 1424 0.733566 CATTGCGACATTGCCACACC 60.734 55.000 0.00 0.00 0.00 4.16
1978 2072 3.758088 CTCGTCGGCGATGGTCAGG 62.758 68.421 27.09 10.09 46.80 3.86
2086 2180 3.414700 CTGAGGTGCACGCCGAAC 61.415 66.667 11.45 0.00 0.00 3.95
2122 2216 4.475135 GGCGGTCTCTTGCTCCCC 62.475 72.222 0.00 0.00 0.00 4.81
2202 2296 2.597805 ACAGGCTCAGGTCGTCGT 60.598 61.111 0.00 0.00 0.00 4.34
2321 2415 0.394899 GGATGCTACCCTGCTTGCTT 60.395 55.000 0.00 0.00 0.00 3.91
2322 2416 1.225704 GGATGCTACCCTGCTTGCT 59.774 57.895 0.00 0.00 0.00 3.91
2323 2417 2.182842 CGGATGCTACCCTGCTTGC 61.183 63.158 0.00 0.00 0.00 4.01
2324 2418 2.182842 GCGGATGCTACCCTGCTTG 61.183 63.158 0.00 0.00 38.39 4.01
2325 2419 2.190578 GCGGATGCTACCCTGCTT 59.809 61.111 0.00 0.00 38.39 3.91
2326 2420 4.227134 CGCGGATGCTACCCTGCT 62.227 66.667 0.00 0.00 39.65 4.24
2327 2421 4.530857 ACGCGGATGCTACCCTGC 62.531 66.667 12.47 0.00 39.65 4.85
2328 2422 2.173669 CAACGCGGATGCTACCCTG 61.174 63.158 12.47 0.00 39.65 4.45
2449 2547 9.416332 TAGCTAAGCTAAGCACTGGCTAACTTT 62.416 40.741 0.00 0.00 44.85 2.66
2458 2556 2.432510 ACCCTAGCTAAGCTAAGCACTG 59.567 50.000 0.00 0.00 45.30 3.66
2468 2566 5.066764 GTCTACAGACAGAACCCTAGCTAAG 59.933 48.000 4.48 0.00 44.18 2.18
2470 2568 4.525024 GTCTACAGACAGAACCCTAGCTA 58.475 47.826 4.48 0.00 44.18 3.32
2471 2569 3.358118 GTCTACAGACAGAACCCTAGCT 58.642 50.000 4.48 0.00 44.18 3.32
2490 2588 0.461961 AGTGCTGGGCGATTAGAGTC 59.538 55.000 0.00 0.00 0.00 3.36
2578 2676 7.764443 GCTACTACAAACTGGTTATCAGATTCA 59.236 37.037 0.00 0.00 46.18 2.57
2579 2677 7.764443 TGCTACTACAAACTGGTTATCAGATTC 59.236 37.037 0.00 0.00 46.18 2.52
2580 2678 7.620880 TGCTACTACAAACTGGTTATCAGATT 58.379 34.615 0.00 0.00 46.18 2.40
2581 2679 7.182817 TGCTACTACAAACTGGTTATCAGAT 57.817 36.000 0.00 0.00 46.18 2.90
2582 2680 6.599356 TGCTACTACAAACTGGTTATCAGA 57.401 37.500 0.00 0.00 46.18 3.27
2584 2682 5.642063 GCTTGCTACTACAAACTGGTTATCA 59.358 40.000 0.00 0.00 0.00 2.15
2585 2683 5.642063 TGCTTGCTACTACAAACTGGTTATC 59.358 40.000 0.00 0.00 0.00 1.75
2586 2684 5.556915 TGCTTGCTACTACAAACTGGTTAT 58.443 37.500 0.00 0.00 0.00 1.89
2587 2685 4.963373 TGCTTGCTACTACAAACTGGTTA 58.037 39.130 0.00 0.00 0.00 2.85
2588 2686 3.815401 CTGCTTGCTACTACAAACTGGTT 59.185 43.478 0.00 0.00 0.00 3.67
2589 2687 3.403038 CTGCTTGCTACTACAAACTGGT 58.597 45.455 0.00 0.00 0.00 4.00
2590 2688 2.160417 GCTGCTTGCTACTACAAACTGG 59.840 50.000 0.00 0.00 38.95 4.00
2591 2689 2.807967 TGCTGCTTGCTACTACAAACTG 59.192 45.455 0.00 0.00 43.37 3.16
2592 2690 3.070018 CTGCTGCTTGCTACTACAAACT 58.930 45.455 0.00 0.00 43.37 2.66
2593 2691 3.067106 TCTGCTGCTTGCTACTACAAAC 58.933 45.455 0.00 0.00 43.37 2.93
2594 2692 3.401033 TCTGCTGCTTGCTACTACAAA 57.599 42.857 0.00 0.00 43.37 2.83
2595 2693 3.055891 TCATCTGCTGCTTGCTACTACAA 60.056 43.478 0.00 0.00 43.37 2.41
2596 2694 2.497273 TCATCTGCTGCTTGCTACTACA 59.503 45.455 0.00 0.00 43.37 2.74
2597 2695 3.170791 TCATCTGCTGCTTGCTACTAC 57.829 47.619 0.00 0.00 43.37 2.73
2598 2696 3.196469 AGTTCATCTGCTGCTTGCTACTA 59.804 43.478 0.00 0.00 43.37 1.82
2599 2697 2.027377 AGTTCATCTGCTGCTTGCTACT 60.027 45.455 0.00 1.48 43.37 2.57
2600 2698 2.095532 CAGTTCATCTGCTGCTTGCTAC 59.904 50.000 0.00 0.00 43.37 3.58
2601 2699 2.353323 CAGTTCATCTGCTGCTTGCTA 58.647 47.619 0.00 0.00 43.37 3.49
2612 2710 2.434884 CGGCGCCACAGTTCATCT 60.435 61.111 28.98 0.00 0.00 2.90
2614 2712 4.704833 AGCGGCGCCACAGTTCAT 62.705 61.111 30.40 2.85 0.00 2.57
2669 2767 1.661341 AAATCGAGGATGCTGCTGAC 58.339 50.000 0.00 0.00 0.00 3.51
2670 2768 3.541996 TTAAATCGAGGATGCTGCTGA 57.458 42.857 0.00 0.00 0.00 4.26
2671 2769 4.621068 TTTTAAATCGAGGATGCTGCTG 57.379 40.909 0.00 0.00 0.00 4.41
2672 2770 4.024556 CGATTTTAAATCGAGGATGCTGCT 60.025 41.667 29.22 0.00 43.59 4.24
2673 2771 4.214437 CGATTTTAAATCGAGGATGCTGC 58.786 43.478 29.22 0.00 43.59 5.25
2674 2772 4.024556 AGCGATTTTAAATCGAGGATGCTG 60.025 41.667 34.70 10.61 43.59 4.41
2707 2819 1.227205 CACGCAAAAGGCAAAGGCA 60.227 52.632 0.00 0.00 45.17 4.75
2708 2820 2.597713 GCACGCAAAAGGCAAAGGC 61.598 57.895 0.00 0.00 45.17 4.35
2709 2821 2.302230 CGCACGCAAAAGGCAAAGG 61.302 57.895 0.00 0.00 45.17 3.11
2710 2822 2.930965 GCGCACGCAAAAGGCAAAG 61.931 57.895 10.65 0.00 45.17 2.77
2711 2823 2.959071 GCGCACGCAAAAGGCAAA 60.959 55.556 10.65 0.00 45.17 3.68
2712 2824 3.822403 GAGCGCACGCAAAAGGCAA 62.822 57.895 18.24 0.00 45.17 4.52
2808 2920 2.023181 CTGTGTGTGCGTGTGTGC 59.977 61.111 0.00 0.00 0.00 4.57
2813 2925 1.275471 CTACGACCTGTGTGTGCGTG 61.275 60.000 0.00 0.00 36.51 5.34
2814 2926 1.007734 CTACGACCTGTGTGTGCGT 60.008 57.895 0.00 0.00 38.81 5.24
2815 2927 2.372690 GCTACGACCTGTGTGTGCG 61.373 63.158 0.00 0.00 0.00 5.34
2816 2928 1.006102 AGCTACGACCTGTGTGTGC 60.006 57.895 0.00 0.00 0.00 4.57
2817 2929 0.313987 TGAGCTACGACCTGTGTGTG 59.686 55.000 0.00 0.00 0.00 3.82
2818 2930 0.314302 GTGAGCTACGACCTGTGTGT 59.686 55.000 0.00 0.00 0.00 3.72
2819 2931 0.388649 GGTGAGCTACGACCTGTGTG 60.389 60.000 0.00 0.00 0.00 3.82
2863 2975 1.141665 GAATGCATGCCCGGGAAAC 59.858 57.895 29.31 12.01 0.00 2.78
2864 2976 2.057408 GGAATGCATGCCCGGGAAA 61.057 57.895 29.31 12.66 0.00 3.13
2865 2977 2.441901 GGAATGCATGCCCGGGAA 60.442 61.111 29.31 17.41 0.00 3.97
2866 2978 4.873810 CGGAATGCATGCCCGGGA 62.874 66.667 29.31 10.35 39.59 5.14
2876 2988 1.004440 CCTAGGGCTAGCGGAATGC 60.004 63.158 9.00 0.00 46.98 3.56
2877 2989 0.759346 AACCTAGGGCTAGCGGAATG 59.241 55.000 14.81 2.45 31.95 2.67
2878 2990 0.759346 CAACCTAGGGCTAGCGGAAT 59.241 55.000 14.81 0.00 31.95 3.01
2879 2991 1.968050 GCAACCTAGGGCTAGCGGAA 61.968 60.000 14.81 0.00 31.95 4.30
2880 2992 2.432300 GCAACCTAGGGCTAGCGGA 61.432 63.158 14.81 0.00 31.95 5.54
2881 2993 2.109181 GCAACCTAGGGCTAGCGG 59.891 66.667 14.81 6.74 31.95 5.52
2882 2994 1.227380 CTGCAACCTAGGGCTAGCG 60.227 63.158 14.81 0.00 31.95 4.26
2883 2995 1.524849 GCTGCAACCTAGGGCTAGC 60.525 63.158 14.81 6.04 31.95 3.42
2884 2996 1.147153 GGCTGCAACCTAGGGCTAG 59.853 63.158 14.81 6.96 0.00 3.42
2885 2997 0.031515 TAGGCTGCAACCTAGGGCTA 60.032 55.000 11.96 6.19 41.50 3.93
2886 2998 1.306997 TAGGCTGCAACCTAGGGCT 60.307 57.895 11.96 7.21 41.50 5.19
2887 2999 1.153147 GTAGGCTGCAACCTAGGGC 60.153 63.158 16.28 8.48 43.02 5.19
2888 3000 1.144057 CGTAGGCTGCAACCTAGGG 59.856 63.158 22.61 12.29 43.02 3.53
2889 3001 1.521681 GCGTAGGCTGCAACCTAGG 60.522 63.158 24.93 24.93 46.40 3.02
2890 3002 4.110493 GCGTAGGCTGCAACCTAG 57.890 61.111 16.28 11.22 43.02 3.02
2927 3039 2.224917 TGGAATGGAGGGCGTAGTTTTT 60.225 45.455 0.00 0.00 0.00 1.94
2928 3040 1.353022 TGGAATGGAGGGCGTAGTTTT 59.647 47.619 0.00 0.00 0.00 2.43
2929 3041 0.988832 TGGAATGGAGGGCGTAGTTT 59.011 50.000 0.00 0.00 0.00 2.66
2930 3042 0.988832 TTGGAATGGAGGGCGTAGTT 59.011 50.000 0.00 0.00 0.00 2.24
2931 3043 0.988832 TTTGGAATGGAGGGCGTAGT 59.011 50.000 0.00 0.00 0.00 2.73
2932 3044 2.348411 ATTTGGAATGGAGGGCGTAG 57.652 50.000 0.00 0.00 0.00 3.51
2933 3045 2.818751 AATTTGGAATGGAGGGCGTA 57.181 45.000 0.00 0.00 0.00 4.42
2934 3046 2.818751 TAATTTGGAATGGAGGGCGT 57.181 45.000 0.00 0.00 0.00 5.68
2935 3047 4.670896 AATTAATTTGGAATGGAGGGCG 57.329 40.909 0.00 0.00 0.00 6.13
2936 3048 7.966812 AGATTAATTAATTTGGAATGGAGGGC 58.033 34.615 11.92 0.00 0.00 5.19
2937 3049 9.987272 GAAGATTAATTAATTTGGAATGGAGGG 57.013 33.333 11.92 0.00 0.00 4.30
2965 3077 9.021807 AGAGATCAATCAATTCATGACAAAACT 57.978 29.630 0.00 0.00 41.93 2.66
3062 3174 6.131264 AGCCTCACATGATCCATGATAAAAA 58.869 36.000 13.22 0.00 43.81 1.94
3063 3175 5.698104 AGCCTCACATGATCCATGATAAAA 58.302 37.500 13.22 0.00 43.81 1.52
3064 3176 5.314718 AGCCTCACATGATCCATGATAAA 57.685 39.130 13.22 0.00 43.81 1.40
3065 3177 4.987963 AGCCTCACATGATCCATGATAA 57.012 40.909 13.22 0.00 43.81 1.75
3066 3178 6.631763 ATTAGCCTCACATGATCCATGATA 57.368 37.500 13.22 1.09 43.81 2.15
3067 3179 4.987963 TTAGCCTCACATGATCCATGAT 57.012 40.909 13.22 0.00 43.81 2.45
3068 3180 4.987963 ATTAGCCTCACATGATCCATGA 57.012 40.909 13.22 0.00 43.81 3.07
3069 3181 5.278808 CCAAATTAGCCTCACATGATCCATG 60.279 44.000 0.00 5.48 46.18 3.66
3070 3182 4.831155 CCAAATTAGCCTCACATGATCCAT 59.169 41.667 0.00 0.00 0.00 3.41
3071 3183 4.209538 CCAAATTAGCCTCACATGATCCA 58.790 43.478 0.00 0.00 0.00 3.41
3072 3184 4.037208 CACCAAATTAGCCTCACATGATCC 59.963 45.833 0.00 0.00 0.00 3.36
3073 3185 4.641989 ACACCAAATTAGCCTCACATGATC 59.358 41.667 0.00 0.00 0.00 2.92
3074 3186 4.603131 ACACCAAATTAGCCTCACATGAT 58.397 39.130 0.00 0.00 0.00 2.45
3075 3187 4.032960 ACACCAAATTAGCCTCACATGA 57.967 40.909 0.00 0.00 0.00 3.07
3076 3188 4.022068 ACAACACCAAATTAGCCTCACATG 60.022 41.667 0.00 0.00 0.00 3.21
3077 3189 4.151883 ACAACACCAAATTAGCCTCACAT 58.848 39.130 0.00 0.00 0.00 3.21
3078 3190 3.561143 ACAACACCAAATTAGCCTCACA 58.439 40.909 0.00 0.00 0.00 3.58
3079 3191 5.897377 ATACAACACCAAATTAGCCTCAC 57.103 39.130 0.00 0.00 0.00 3.51
3080 3192 6.477253 TGTATACAACACCAAATTAGCCTCA 58.523 36.000 2.20 0.00 31.43 3.86
3081 3193 6.995511 TGTATACAACACCAAATTAGCCTC 57.004 37.500 2.20 0.00 31.43 4.70
3082 3194 7.613801 TGAATGTATACAACACCAAATTAGCCT 59.386 33.333 10.14 0.00 42.09 4.58
3083 3195 7.767261 TGAATGTATACAACACCAAATTAGCC 58.233 34.615 10.14 0.00 42.09 3.93
3091 3203 9.237187 ACAAACATATGAATGTATACAACACCA 57.763 29.630 10.14 6.05 45.79 4.17
3109 3221 9.953565 AAGTTTGACTAAGCCTATACAAACATA 57.046 29.630 20.13 0.00 44.91 2.29
3110 3222 8.863872 AAGTTTGACTAAGCCTATACAAACAT 57.136 30.769 20.13 11.25 44.91 2.71
3111 3223 9.431887 CTAAGTTTGACTAAGCCTATACAAACA 57.568 33.333 20.13 7.31 44.91 2.83
3112 3224 9.433153 ACTAAGTTTGACTAAGCCTATACAAAC 57.567 33.333 0.00 0.00 43.73 2.93
3120 3232 9.000486 GTCATAAAACTAAGTTTGACTAAGCCT 58.000 33.333 0.00 0.00 35.80 4.58
3121 3233 8.235226 GGTCATAAAACTAAGTTTGACTAAGCC 58.765 37.037 0.00 0.00 35.80 4.35
3122 3234 9.000486 AGGTCATAAAACTAAGTTTGACTAAGC 58.000 33.333 0.00 0.00 35.80 3.09
3126 3238 8.877195 TCCTAGGTCATAAAACTAAGTTTGACT 58.123 33.333 9.08 0.00 35.80 3.41
3127 3239 8.933807 GTCCTAGGTCATAAAACTAAGTTTGAC 58.066 37.037 9.08 0.00 35.80 3.18
3128 3240 8.653191 TGTCCTAGGTCATAAAACTAAGTTTGA 58.347 33.333 9.08 0.00 35.80 2.69
3129 3241 8.842358 TGTCCTAGGTCATAAAACTAAGTTTG 57.158 34.615 9.08 0.00 35.80 2.93
3130 3242 9.856162 TTTGTCCTAGGTCATAAAACTAAGTTT 57.144 29.630 9.63 0.00 37.34 2.66
3131 3243 9.856162 TTTTGTCCTAGGTCATAAAACTAAGTT 57.144 29.630 9.63 0.00 0.00 2.66
3132 3244 9.503399 CTTTTGTCCTAGGTCATAAAACTAAGT 57.497 33.333 9.63 0.00 0.00 2.24
3133 3245 9.503399 ACTTTTGTCCTAGGTCATAAAACTAAG 57.497 33.333 9.63 8.37 0.00 2.18
3145 3257 9.813446 CGAAATAGTTATACTTTTGTCCTAGGT 57.187 33.333 9.08 0.00 0.00 3.08
3146 3258 9.813446 ACGAAATAGTTATACTTTTGTCCTAGG 57.187 33.333 0.82 0.82 0.00 3.02
3149 3261 8.866956 CGAACGAAATAGTTATACTTTTGTCCT 58.133 33.333 0.00 0.00 34.00 3.85
3150 3262 8.650714 ACGAACGAAATAGTTATACTTTTGTCC 58.349 33.333 0.14 0.00 34.00 4.02
3157 3269 9.674824 CTCCATTACGAACGAAATAGTTATACT 57.325 33.333 0.14 0.00 34.00 2.12
3158 3270 8.909671 CCTCCATTACGAACGAAATAGTTATAC 58.090 37.037 0.14 0.00 34.00 1.47
3159 3271 8.084073 CCCTCCATTACGAACGAAATAGTTATA 58.916 37.037 0.14 0.00 34.00 0.98
3160 3272 6.927381 CCCTCCATTACGAACGAAATAGTTAT 59.073 38.462 0.14 0.00 34.00 1.89
3161 3273 6.096705 TCCCTCCATTACGAACGAAATAGTTA 59.903 38.462 0.14 0.00 34.00 2.24
3162 3274 5.105228 TCCCTCCATTACGAACGAAATAGTT 60.105 40.000 0.14 0.00 36.99 2.24
3163 3275 4.403432 TCCCTCCATTACGAACGAAATAGT 59.597 41.667 0.14 0.00 0.00 2.12
3164 3276 4.940463 TCCCTCCATTACGAACGAAATAG 58.060 43.478 0.14 0.00 0.00 1.73
3165 3277 4.403432 ACTCCCTCCATTACGAACGAAATA 59.597 41.667 0.14 0.00 0.00 1.40
3166 3278 3.197116 ACTCCCTCCATTACGAACGAAAT 59.803 43.478 0.14 0.00 0.00 2.17
3167 3279 2.564062 ACTCCCTCCATTACGAACGAAA 59.436 45.455 0.14 0.00 0.00 3.46
3168 3280 2.173519 ACTCCCTCCATTACGAACGAA 58.826 47.619 0.14 0.00 0.00 3.85
3169 3281 1.843368 ACTCCCTCCATTACGAACGA 58.157 50.000 0.14 0.00 0.00 3.85
3170 3282 4.317671 AATACTCCCTCCATTACGAACG 57.682 45.455 0.00 0.00 0.00 3.95
3171 3283 6.152932 TGTAATACTCCCTCCATTACGAAC 57.847 41.667 0.00 0.00 37.76 3.95
3172 3284 6.989155 ATGTAATACTCCCTCCATTACGAA 57.011 37.500 0.00 0.00 37.76 3.85
3173 3285 6.989155 AATGTAATACTCCCTCCATTACGA 57.011 37.500 0.00 0.00 37.76 3.43
3174 3286 7.713507 TGAAAATGTAATACTCCCTCCATTACG 59.286 37.037 0.00 0.00 37.76 3.18
3175 3287 8.837389 GTGAAAATGTAATACTCCCTCCATTAC 58.163 37.037 0.00 0.00 36.25 1.89
3176 3288 8.553153 TGTGAAAATGTAATACTCCCTCCATTA 58.447 33.333 0.00 0.00 0.00 1.90
3177 3289 7.410174 TGTGAAAATGTAATACTCCCTCCATT 58.590 34.615 0.00 0.00 0.00 3.16
3178 3290 6.969043 TGTGAAAATGTAATACTCCCTCCAT 58.031 36.000 0.00 0.00 0.00 3.41
3179 3291 6.381498 TGTGAAAATGTAATACTCCCTCCA 57.619 37.500 0.00 0.00 0.00 3.86
3180 3292 7.881775 ATTGTGAAAATGTAATACTCCCTCC 57.118 36.000 0.00 0.00 0.00 4.30
3181 3293 9.614792 ACTATTGTGAAAATGTAATACTCCCTC 57.385 33.333 0.00 0.00 0.00 4.30
3182 3294 9.396022 CACTATTGTGAAAATGTAATACTCCCT 57.604 33.333 0.50 0.00 46.55 4.20
3210 3322 9.528489 GGGCAGGTATAATATAGATTTTGGAAA 57.472 33.333 0.00 0.00 0.00 3.13
3211 3323 7.827236 CGGGCAGGTATAATATAGATTTTGGAA 59.173 37.037 0.00 0.00 0.00 3.53
3212 3324 7.335627 CGGGCAGGTATAATATAGATTTTGGA 58.664 38.462 0.00 0.00 0.00 3.53
3213 3325 6.038271 GCGGGCAGGTATAATATAGATTTTGG 59.962 42.308 0.00 0.00 0.00 3.28
3214 3326 6.038271 GGCGGGCAGGTATAATATAGATTTTG 59.962 42.308 0.00 0.00 0.00 2.44
3215 3327 6.120220 GGCGGGCAGGTATAATATAGATTTT 58.880 40.000 0.00 0.00 0.00 1.82
3216 3328 5.681639 GGCGGGCAGGTATAATATAGATTT 58.318 41.667 0.00 0.00 0.00 2.17
3217 3329 4.202223 CGGCGGGCAGGTATAATATAGATT 60.202 45.833 0.00 0.00 0.00 2.40
3218 3330 3.321111 CGGCGGGCAGGTATAATATAGAT 59.679 47.826 0.00 0.00 0.00 1.98
3219 3331 2.691526 CGGCGGGCAGGTATAATATAGA 59.308 50.000 0.00 0.00 0.00 1.98
3220 3332 2.802057 GCGGCGGGCAGGTATAATATAG 60.802 54.545 9.78 0.00 42.87 1.31
3221 3333 1.137479 GCGGCGGGCAGGTATAATATA 59.863 52.381 9.78 0.00 42.87 0.86
3222 3334 0.107848 GCGGCGGGCAGGTATAATAT 60.108 55.000 9.78 0.00 42.87 1.28
3223 3335 1.294138 GCGGCGGGCAGGTATAATA 59.706 57.895 9.78 0.00 42.87 0.98
3224 3336 2.032071 GCGGCGGGCAGGTATAAT 59.968 61.111 9.78 0.00 42.87 1.28
3235 3347 4.717629 TCACGTCAGAAGCGGCGG 62.718 66.667 9.78 0.00 0.00 6.13
3236 3348 3.175240 CTCACGTCAGAAGCGGCG 61.175 66.667 0.51 0.51 0.00 6.46
3237 3349 2.089349 GTCTCACGTCAGAAGCGGC 61.089 63.158 0.00 0.00 0.00 6.53
3238 3350 0.318699 TTGTCTCACGTCAGAAGCGG 60.319 55.000 0.00 0.00 0.00 5.52
3239 3351 1.487482 TTTGTCTCACGTCAGAAGCG 58.513 50.000 0.00 0.00 0.00 4.68
3240 3352 3.321497 AGATTTGTCTCACGTCAGAAGC 58.679 45.455 0.00 0.00 0.00 3.86
3241 3353 5.387855 CGAAAGATTTGTCTCACGTCAGAAG 60.388 44.000 0.00 0.00 0.00 2.85
3242 3354 4.444388 CGAAAGATTTGTCTCACGTCAGAA 59.556 41.667 0.00 0.00 0.00 3.02
3243 3355 3.981416 CGAAAGATTTGTCTCACGTCAGA 59.019 43.478 0.00 0.00 0.00 3.27
3244 3356 3.736252 ACGAAAGATTTGTCTCACGTCAG 59.264 43.478 0.00 0.00 30.42 3.51
3245 3357 3.489416 CACGAAAGATTTGTCTCACGTCA 59.511 43.478 0.00 0.00 32.51 4.35
3246 3358 3.661936 GCACGAAAGATTTGTCTCACGTC 60.662 47.826 0.00 0.00 32.51 4.34
3247 3359 2.221055 GCACGAAAGATTTGTCTCACGT 59.779 45.455 0.00 0.00 34.05 4.49
3248 3360 2.411547 GGCACGAAAGATTTGTCTCACG 60.412 50.000 0.00 0.00 0.00 4.35
3249 3361 2.808543 AGGCACGAAAGATTTGTCTCAC 59.191 45.455 0.00 0.00 0.00 3.51
3250 3362 3.067106 GAGGCACGAAAGATTTGTCTCA 58.933 45.455 0.00 0.00 40.92 3.27
3251 3363 2.092838 CGAGGCACGAAAGATTTGTCTC 59.907 50.000 0.00 0.00 45.77 3.36
3252 3364 2.069273 CGAGGCACGAAAGATTTGTCT 58.931 47.619 0.00 0.00 45.77 3.41
3253 3365 2.510615 CGAGGCACGAAAGATTTGTC 57.489 50.000 0.00 0.00 45.77 3.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.