Multiple sequence alignment - TraesCS5A01G237400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G237400 chr5A 100.000 3578 0 0 1 3578 453342349 453345926 0.000000e+00 6608.0
1 TraesCS5A01G237400 chr5B 93.575 2179 97 12 850 2997 415648095 415650261 0.000000e+00 3208.0
2 TraesCS5A01G237400 chr5B 90.498 221 14 3 3016 3230 415670482 415670701 5.850000e-73 285.0
3 TraesCS5A01G237400 chr5D 94.807 1964 78 15 1042 2997 352693017 352694964 0.000000e+00 3040.0
4 TraesCS5A01G237400 chr5D 95.597 318 13 1 959 1276 352692898 352693214 3.190000e-140 508.0
5 TraesCS5A01G237400 chr5D 81.575 597 99 10 13 601 298995562 298996155 1.930000e-132 483.0
6 TraesCS5A01G237400 chr5D 80.705 596 104 9 19 606 510124716 510124124 1.510000e-123 453.0
7 TraesCS5A01G237400 chr5D 86.364 286 10 14 3016 3272 352698638 352698923 5.850000e-73 285.0
8 TraesCS5A01G237400 chr5D 100.000 32 0 0 2992 3023 41773685 41773654 3.860000e-05 60.2
9 TraesCS5A01G237400 chr3D 92.144 751 27 11 1 719 30263975 30263225 0.000000e+00 1031.0
10 TraesCS5A01G237400 chr3D 80.106 568 102 10 46 604 263356438 263355873 2.570000e-111 412.0
11 TraesCS5A01G237400 chr7A 91.090 752 33 14 1 719 208551351 208550601 0.000000e+00 987.0
12 TraesCS5A01G237400 chr7A 80.936 598 100 12 19 606 674296060 674295467 9.050000e-126 460.0
13 TraesCS5A01G237400 chr7A 97.706 218 5 0 3361 3578 97241551 97241334 3.370000e-100 375.0
14 TraesCS5A01G237400 chr7A 94.444 36 2 0 2988 3023 715051084 715051049 4.990000e-04 56.5
15 TraesCS5A01G237400 chr7A 100.000 28 0 0 1538 1565 100750126 100750153 6.000000e-03 52.8
16 TraesCS5A01G237400 chr3A 83.598 567 85 7 43 602 621001970 621001405 3.160000e-145 525.0
17 TraesCS5A01G237400 chr3A 78.713 202 32 7 3365 3556 624852059 624852259 1.350000e-24 124.0
18 TraesCS5A01G237400 chr1D 83.216 566 87 7 43 601 114335455 114334891 2.460000e-141 512.0
19 TraesCS5A01G237400 chr6A 83.216 566 84 8 43 601 590032237 590031676 3.190000e-140 508.0
20 TraesCS5A01G237400 chr6A 79.365 189 26 9 3368 3547 612588401 612588217 1.740000e-23 121.0
21 TraesCS5A01G237400 chr7B 97.727 220 5 0 3359 3578 561135342 561135561 2.610000e-101 379.0
22 TraesCS5A01G237400 chr7B 97.285 221 6 0 3358 3578 720637197 720637417 3.370000e-100 375.0
23 TraesCS5A01G237400 chr7B 97.368 38 1 0 2985 3022 607319049 607319086 8.290000e-07 65.8
24 TraesCS5A01G237400 chr6B 97.717 219 5 0 3360 3578 28467947 28468165 9.380000e-101 377.0
25 TraesCS5A01G237400 chr2A 82.020 406 66 6 43 442 14596030 14596434 4.420000e-89 339.0
26 TraesCS5A01G237400 chr2A 81.466 232 27 13 3361 3578 57531485 57531256 3.670000e-40 176.0
27 TraesCS5A01G237400 chr3B 96.923 130 4 0 3449 3578 751913705 751913576 6.010000e-53 219.0
28 TraesCS5A01G237400 chr4B 91.129 124 3 2 3359 3474 95086280 95086403 1.030000e-35 161.0
29 TraesCS5A01G237400 chr4B 91.892 111 8 1 3459 3569 95102427 95102536 1.720000e-33 154.0
30 TraesCS5A01G237400 chr4B 94.872 39 2 0 2985 3023 519352550 519352512 1.070000e-05 62.1
31 TraesCS5A01G237400 chr2B 89.167 120 12 1 3459 3578 547915839 547915721 8.000000e-32 148.0
32 TraesCS5A01G237400 chr2B 92.500 40 2 1 2983 3022 79359586 79359548 4.990000e-04 56.5
33 TraesCS5A01G237400 chr1A 79.293 198 30 7 3365 3552 571561763 571561959 1.040000e-25 128.0
34 TraesCS5A01G237400 chr6D 97.143 35 1 0 2988 3022 428262145 428262111 3.860000e-05 60.2
35 TraesCS5A01G237400 chr6D 97.059 34 1 0 2990 3023 81756095 81756128 1.390000e-04 58.4
36 TraesCS5A01G237400 chr4A 97.143 35 1 0 2988 3022 236541816 236541782 3.860000e-05 60.2
37 TraesCS5A01G237400 chr2D 97.143 35 1 0 2989 3023 637442083 637442049 3.860000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G237400 chr5A 453342349 453345926 3577 False 6608.000000 6608 100.000 1 3578 1 chr5A.!!$F1 3577
1 TraesCS5A01G237400 chr5B 415648095 415650261 2166 False 3208.000000 3208 93.575 850 2997 1 chr5B.!!$F1 2147
2 TraesCS5A01G237400 chr5D 352692898 352698923 6025 False 1277.666667 3040 92.256 959 3272 3 chr5D.!!$F2 2313
3 TraesCS5A01G237400 chr5D 298995562 298996155 593 False 483.000000 483 81.575 13 601 1 chr5D.!!$F1 588
4 TraesCS5A01G237400 chr5D 510124124 510124716 592 True 453.000000 453 80.705 19 606 1 chr5D.!!$R2 587
5 TraesCS5A01G237400 chr3D 30263225 30263975 750 True 1031.000000 1031 92.144 1 719 1 chr3D.!!$R1 718
6 TraesCS5A01G237400 chr3D 263355873 263356438 565 True 412.000000 412 80.106 46 604 1 chr3D.!!$R2 558
7 TraesCS5A01G237400 chr7A 208550601 208551351 750 True 987.000000 987 91.090 1 719 1 chr7A.!!$R2 718
8 TraesCS5A01G237400 chr7A 674295467 674296060 593 True 460.000000 460 80.936 19 606 1 chr7A.!!$R3 587
9 TraesCS5A01G237400 chr3A 621001405 621001970 565 True 525.000000 525 83.598 43 602 1 chr3A.!!$R1 559
10 TraesCS5A01G237400 chr1D 114334891 114335455 564 True 512.000000 512 83.216 43 601 1 chr1D.!!$R1 558
11 TraesCS5A01G237400 chr6A 590031676 590032237 561 True 508.000000 508 83.216 43 601 1 chr6A.!!$R1 558

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
733 769 0.453390 GCCATGAGTTAGTTGCTGCC 59.547 55.0 0.0 0.0 0.00 4.85 F
1572 1653 0.253327 AGGACAAGAAGGAATCGCCC 59.747 55.0 0.0 0.0 37.37 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1857 1938 0.246635 TAGACTTCTTGTGCCTCCGC 59.753 55.0 0.0 0.0 0.00 5.54 R
3382 7171 0.096976 CGGTCTTGCCAAATAGTGCG 59.903 55.0 0.0 0.0 36.97 5.34 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 1.221840 CCACCATCAGACTTCGGGG 59.778 63.158 0.00 0.00 0.00 5.73
99 101 2.310647 TCCTTATCTCCCCACCAAAACC 59.689 50.000 0.00 0.00 0.00 3.27
208 212 4.415846 ACCTTTAACAAGACTTCCTTCCCT 59.584 41.667 0.00 0.00 31.42 4.20
210 214 5.456186 CCTTTAACAAGACTTCCTTCCCTCA 60.456 44.000 0.00 0.00 31.42 3.86
308 313 0.975556 TCTGCTCCAACCATAGCCGA 60.976 55.000 0.00 0.00 37.97 5.54
422 430 4.948341 AAACACTGGATTTACCCAAACC 57.052 40.909 0.00 0.00 35.47 3.27
426 434 4.105057 ACACTGGATTTACCCAAACCTACA 59.895 41.667 0.00 0.00 35.47 2.74
590 598 2.270352 TCGATGCCACCAACTTCTTT 57.730 45.000 0.00 0.00 0.00 2.52
612 644 5.787953 TTTCATCTGCACAAATCAGGAAA 57.212 34.783 0.00 0.00 32.63 3.13
645 681 1.376683 TCACCTTGCCGAATTCCCG 60.377 57.895 0.00 0.00 0.00 5.14
664 700 3.254657 CCCGTTGATGGTGTAAACATGTT 59.745 43.478 4.92 4.92 0.00 2.71
696 732 4.002982 TGAATTGAAGCGCACTCTGTATT 58.997 39.130 11.47 7.36 0.00 1.89
719 755 2.417933 GACTGAGCTAACACAAGCCATG 59.582 50.000 0.00 0.00 43.86 3.66
720 756 2.038952 ACTGAGCTAACACAAGCCATGA 59.961 45.455 0.00 0.00 43.86 3.07
721 757 2.676839 CTGAGCTAACACAAGCCATGAG 59.323 50.000 0.00 0.00 43.86 2.90
722 758 2.038952 TGAGCTAACACAAGCCATGAGT 59.961 45.455 0.00 0.00 43.86 3.41
723 759 3.077359 GAGCTAACACAAGCCATGAGTT 58.923 45.455 0.00 7.78 43.86 3.01
724 760 4.253685 GAGCTAACACAAGCCATGAGTTA 58.746 43.478 0.00 8.92 43.86 2.24
728 764 4.836125 AACACAAGCCATGAGTTAGTTG 57.164 40.909 0.00 0.00 40.44 3.16
729 765 2.554032 ACACAAGCCATGAGTTAGTTGC 59.446 45.455 0.00 0.00 27.31 4.17
730 766 2.816087 CACAAGCCATGAGTTAGTTGCT 59.184 45.455 0.00 0.00 0.00 3.91
731 767 2.816087 ACAAGCCATGAGTTAGTTGCTG 59.184 45.455 0.00 0.00 0.00 4.41
732 768 1.457346 AGCCATGAGTTAGTTGCTGC 58.543 50.000 0.00 0.00 0.00 5.25
733 769 0.453390 GCCATGAGTTAGTTGCTGCC 59.547 55.000 0.00 0.00 0.00 4.85
734 770 1.952367 GCCATGAGTTAGTTGCTGCCT 60.952 52.381 0.00 0.00 0.00 4.75
735 771 2.680805 GCCATGAGTTAGTTGCTGCCTA 60.681 50.000 0.00 0.00 0.00 3.93
736 772 3.201290 CCATGAGTTAGTTGCTGCCTAG 58.799 50.000 0.00 0.00 0.00 3.02
737 773 3.118629 CCATGAGTTAGTTGCTGCCTAGA 60.119 47.826 0.00 0.00 0.00 2.43
738 774 4.444022 CCATGAGTTAGTTGCTGCCTAGAT 60.444 45.833 0.00 0.00 0.00 1.98
739 775 4.128925 TGAGTTAGTTGCTGCCTAGATG 57.871 45.455 0.00 0.00 0.00 2.90
740 776 3.515502 TGAGTTAGTTGCTGCCTAGATGT 59.484 43.478 0.00 0.00 0.00 3.06
741 777 4.020218 TGAGTTAGTTGCTGCCTAGATGTT 60.020 41.667 0.00 0.00 0.00 2.71
742 778 4.508662 AGTTAGTTGCTGCCTAGATGTTC 58.491 43.478 0.00 0.00 0.00 3.18
743 779 2.409948 AGTTGCTGCCTAGATGTTCC 57.590 50.000 0.00 0.00 0.00 3.62
744 780 1.630369 AGTTGCTGCCTAGATGTTCCA 59.370 47.619 0.00 0.00 0.00 3.53
745 781 2.040278 AGTTGCTGCCTAGATGTTCCAA 59.960 45.455 0.00 0.00 0.00 3.53
746 782 2.819608 GTTGCTGCCTAGATGTTCCAAA 59.180 45.455 0.00 0.00 0.00 3.28
747 783 3.153369 TGCTGCCTAGATGTTCCAAAA 57.847 42.857 0.00 0.00 0.00 2.44
748 784 3.495331 TGCTGCCTAGATGTTCCAAAAA 58.505 40.909 0.00 0.00 0.00 1.94
749 785 3.507233 TGCTGCCTAGATGTTCCAAAAAG 59.493 43.478 0.00 0.00 0.00 2.27
750 786 3.674410 GCTGCCTAGATGTTCCAAAAAGC 60.674 47.826 0.00 0.00 0.00 3.51
751 787 2.825532 TGCCTAGATGTTCCAAAAAGCC 59.174 45.455 0.00 0.00 0.00 4.35
752 788 2.166459 GCCTAGATGTTCCAAAAAGCCC 59.834 50.000 0.00 0.00 0.00 5.19
753 789 2.760650 CCTAGATGTTCCAAAAAGCCCC 59.239 50.000 0.00 0.00 0.00 5.80
754 790 2.702270 AGATGTTCCAAAAAGCCCCT 57.298 45.000 0.00 0.00 0.00 4.79
755 791 2.250924 AGATGTTCCAAAAAGCCCCTG 58.749 47.619 0.00 0.00 0.00 4.45
756 792 1.970640 GATGTTCCAAAAAGCCCCTGT 59.029 47.619 0.00 0.00 0.00 4.00
757 793 2.757894 TGTTCCAAAAAGCCCCTGTA 57.242 45.000 0.00 0.00 0.00 2.74
758 794 3.252554 TGTTCCAAAAAGCCCCTGTAT 57.747 42.857 0.00 0.00 0.00 2.29
759 795 2.896685 TGTTCCAAAAAGCCCCTGTATG 59.103 45.455 0.00 0.00 0.00 2.39
760 796 3.161866 GTTCCAAAAAGCCCCTGTATGA 58.838 45.455 0.00 0.00 0.00 2.15
761 797 3.756082 TCCAAAAAGCCCCTGTATGAT 57.244 42.857 0.00 0.00 0.00 2.45
762 798 4.059773 TCCAAAAAGCCCCTGTATGATT 57.940 40.909 0.00 0.00 0.00 2.57
763 799 4.424842 TCCAAAAAGCCCCTGTATGATTT 58.575 39.130 0.00 0.00 0.00 2.17
764 800 4.843516 TCCAAAAAGCCCCTGTATGATTTT 59.156 37.500 0.00 0.00 0.00 1.82
765 801 5.309282 TCCAAAAAGCCCCTGTATGATTTTT 59.691 36.000 0.00 0.00 31.87 1.94
795 831 4.989279 AAAAGCCCATGTATGTGATCAC 57.011 40.909 19.27 19.27 0.00 3.06
796 832 3.650281 AAGCCCATGTATGTGATCACA 57.350 42.857 29.67 29.67 46.44 3.58
797 833 2.923121 AGCCCATGTATGTGATCACAC 58.077 47.619 30.09 18.76 45.05 3.82
808 844 3.822594 GTGATCACACGTATTTTGCCA 57.177 42.857 21.07 0.00 37.28 4.92
809 845 4.355543 GTGATCACACGTATTTTGCCAT 57.644 40.909 21.07 0.00 37.28 4.40
810 846 4.342772 GTGATCACACGTATTTTGCCATC 58.657 43.478 21.07 0.00 37.28 3.51
811 847 4.006319 TGATCACACGTATTTTGCCATCA 58.994 39.130 0.00 0.00 0.00 3.07
812 848 4.457257 TGATCACACGTATTTTGCCATCAA 59.543 37.500 0.00 0.00 0.00 2.57
813 849 4.418013 TCACACGTATTTTGCCATCAAG 57.582 40.909 0.00 0.00 33.12 3.02
814 850 3.190327 TCACACGTATTTTGCCATCAAGG 59.810 43.478 0.00 0.00 41.84 3.61
837 873 3.712907 GGCACCAAGAGGCCCGTA 61.713 66.667 0.00 0.00 44.53 4.02
838 874 2.349755 GCACCAAGAGGCCCGTAA 59.650 61.111 0.00 0.00 39.06 3.18
839 875 1.302993 GCACCAAGAGGCCCGTAAA 60.303 57.895 0.00 0.00 39.06 2.01
840 876 1.305930 GCACCAAGAGGCCCGTAAAG 61.306 60.000 0.00 0.00 39.06 1.85
841 877 1.002502 ACCAAGAGGCCCGTAAAGC 60.003 57.895 0.00 0.00 39.06 3.51
847 883 3.284336 GGCCCGTAAAGCCCAAAG 58.716 61.111 0.00 0.00 45.16 2.77
848 884 2.571757 GCCCGTAAAGCCCAAAGC 59.428 61.111 0.00 0.00 44.25 3.51
855 891 0.709992 TAAAGCCCAAAGCCCATCCT 59.290 50.000 0.00 0.00 45.47 3.24
912 954 2.203788 TCCTCACCTCCGCTGGTT 60.204 61.111 0.00 0.00 38.45 3.67
919 961 2.425592 CTCCGCTGGTTCCACACA 59.574 61.111 0.00 0.00 0.00 3.72
935 977 2.918600 CACACACATCCATCGCAAATTG 59.081 45.455 0.00 0.00 0.00 2.32
940 982 0.461135 ATCCATCGCAAATTGCCCAC 59.539 50.000 12.80 0.00 41.12 4.61
945 987 1.213537 CGCAAATTGCCCACCTCTG 59.786 57.895 12.80 0.00 41.12 3.35
948 990 1.337167 GCAAATTGCCCACCTCTGTTC 60.337 52.381 6.72 0.00 37.42 3.18
949 991 1.273327 CAAATTGCCCACCTCTGTTCC 59.727 52.381 0.00 0.00 0.00 3.62
1011 1056 3.188786 GTCGCCATGTCTCGCACC 61.189 66.667 0.00 0.00 0.00 5.01
1305 1386 1.447838 CTACCACAATGAGCGCGGT 60.448 57.895 12.23 12.23 0.00 5.68
1386 1467 2.822399 GAATGGTCCGCCTCCGAT 59.178 61.111 0.00 0.00 36.29 4.18
1536 1617 1.446907 CCGACGAGTACCAGTACAGT 58.553 55.000 10.41 9.22 38.48 3.55
1537 1618 1.129998 CCGACGAGTACCAGTACAGTG 59.870 57.143 10.41 0.00 38.48 3.66
1538 1619 2.071540 CGACGAGTACCAGTACAGTGA 58.928 52.381 10.41 0.00 38.48 3.41
1539 1620 2.093941 CGACGAGTACCAGTACAGTGAG 59.906 54.545 10.41 3.58 38.48 3.51
1552 1633 0.628522 CAGTGAGGAGGAGGAGGAGA 59.371 60.000 0.00 0.00 0.00 3.71
1557 1638 0.634465 AGGAGGAGGAGGAGAAGGAC 59.366 60.000 0.00 0.00 0.00 3.85
1572 1653 0.253327 AGGACAAGAAGGAATCGCCC 59.747 55.000 0.00 0.00 37.37 6.13
1581 1662 0.543749 AGGAATCGCCCAAGAAGGAG 59.456 55.000 0.00 0.00 41.22 3.69
1601 1682 3.286353 AGTCATCTGAGAAGAGCGATGA 58.714 45.455 0.00 0.00 39.73 2.92
1765 1846 1.476891 GTCGCCACAGGAAGTCTGATA 59.523 52.381 0.00 0.00 46.18 2.15
1813 1894 1.195115 TGAGGATTCAGAGGGTTCCG 58.805 55.000 0.00 0.00 33.35 4.30
1841 1922 7.723616 TGACTCTGAAGATTCTAGGGATAAGAG 59.276 40.741 0.00 0.00 34.87 2.85
1842 1923 7.821566 ACTCTGAAGATTCTAGGGATAAGAGA 58.178 38.462 0.00 0.00 33.36 3.10
1857 1938 3.799281 AAGAGAAGGAGCAAGAGATCG 57.201 47.619 0.00 0.00 0.00 3.69
1888 1969 3.391799 AGAAGTCTAAGAGGAGGGGAC 57.608 52.381 0.00 0.00 0.00 4.46
1929 2010 4.200874 AGAGTAAGAGTCTGGATGTACCG 58.799 47.826 0.00 0.00 42.61 4.02
1944 2025 2.426024 TGTACCGTCTGATGTTAGCTCC 59.574 50.000 0.00 0.00 0.00 4.70
2238 2319 2.691409 TTAGCTATGGTGGTGCACTC 57.309 50.000 17.98 10.23 34.40 3.51
2403 2484 6.892456 AGAGGATGAATGCTATCCGTATAAGA 59.108 38.462 0.00 0.00 46.93 2.10
2547 2628 0.687354 GCCAAGAGACAGGACCTTCA 59.313 55.000 0.00 0.00 0.00 3.02
2563 2644 3.446161 ACCTTCACATGATCCATTTGCTG 59.554 43.478 0.00 0.00 0.00 4.41
2620 2701 6.716934 TTACAAAGAAATGGTTGCCACTAA 57.283 33.333 0.00 0.00 35.80 2.24
2945 3051 1.880646 GCGGGTCTTCTTTGGCACTTA 60.881 52.381 0.00 0.00 0.00 2.24
3008 4593 4.159135 TGTTAACATCTACTCCCTCCGTTC 59.841 45.833 3.59 0.00 0.00 3.95
3009 4594 1.777941 ACATCTACTCCCTCCGTTCC 58.222 55.000 0.00 0.00 0.00 3.62
3010 4595 1.006758 ACATCTACTCCCTCCGTTCCA 59.993 52.381 0.00 0.00 0.00 3.53
3018 6779 2.238898 CTCCCTCCGTTCCAAAATAGGT 59.761 50.000 0.00 0.00 0.00 3.08
3021 6782 3.007635 CCTCCGTTCCAAAATAGGTGAC 58.992 50.000 0.00 0.00 0.00 3.67
3093 6859 4.566004 TCCGTGTTATCCTATGCTTATGC 58.434 43.478 0.00 0.00 40.20 3.14
3140 6906 1.414919 ACGCCTTGAGGACAAAGTACA 59.585 47.619 0.06 0.00 37.39 2.90
3141 6907 2.069273 CGCCTTGAGGACAAAGTACAG 58.931 52.381 0.06 0.00 37.39 2.74
3143 6909 2.551071 GCCTTGAGGACAAAGTACAGCT 60.551 50.000 0.06 0.00 37.39 4.24
3144 6910 3.330267 CCTTGAGGACAAAGTACAGCTC 58.670 50.000 0.00 0.00 37.39 4.09
3145 6911 3.244215 CCTTGAGGACAAAGTACAGCTCA 60.244 47.826 0.00 0.00 37.39 4.26
3146 6912 4.380531 CTTGAGGACAAAGTACAGCTCAA 58.619 43.478 0.00 0.00 35.49 3.02
3147 6913 4.415881 TGAGGACAAAGTACAGCTCAAA 57.584 40.909 0.00 0.00 0.00 2.69
3151 6933 5.564550 AGGACAAAGTACAGCTCAAATCAT 58.435 37.500 0.00 0.00 0.00 2.45
3157 6939 6.492007 AAGTACAGCTCAAATCATTGTCAG 57.508 37.500 0.00 0.00 37.79 3.51
3217 6999 1.206072 GTCACGTCACGCTCGTACT 59.794 57.895 0.00 0.00 39.55 2.73
3218 7000 0.788645 GTCACGTCACGCTCGTACTC 60.789 60.000 0.00 0.00 39.55 2.59
3219 7001 0.947660 TCACGTCACGCTCGTACTCT 60.948 55.000 0.00 0.00 39.55 3.24
3220 7002 0.717784 CACGTCACGCTCGTACTCTA 59.282 55.000 0.00 0.00 39.55 2.43
3221 7003 0.718343 ACGTCACGCTCGTACTCTAC 59.282 55.000 0.00 0.00 39.78 2.59
3223 7005 1.326852 CGTCACGCTCGTACTCTACAT 59.673 52.381 0.00 0.00 0.00 2.29
3254 7043 6.674694 ACTATTCAGACAGCAAATGTGATC 57.325 37.500 0.00 0.00 44.17 2.92
3261 7050 6.371271 TCAGACAGCAAATGTGATCGAAAATA 59.629 34.615 0.00 0.00 44.17 1.40
3262 7051 7.066163 TCAGACAGCAAATGTGATCGAAAATAT 59.934 33.333 0.00 0.00 44.17 1.28
3263 7052 8.337532 CAGACAGCAAATGTGATCGAAAATATA 58.662 33.333 0.00 0.00 44.17 0.86
3264 7053 8.338259 AGACAGCAAATGTGATCGAAAATATAC 58.662 33.333 0.00 0.00 44.17 1.47
3267 7056 9.162793 CAGCAAATGTGATCGAAAATATACTTC 57.837 33.333 0.00 0.00 0.00 3.01
3269 7058 8.345565 GCAAATGTGATCGAAAATATACTTCCT 58.654 33.333 0.00 0.00 0.00 3.36
3273 7062 7.693952 TGTGATCGAAAATATACTTCCTTTGC 58.306 34.615 0.00 0.00 0.00 3.68
3274 7063 6.846283 GTGATCGAAAATATACTTCCTTTGCG 59.154 38.462 0.00 0.00 33.23 4.85
3275 7064 6.759356 TGATCGAAAATATACTTCCTTTGCGA 59.241 34.615 2.20 2.20 42.37 5.10
3276 7065 6.971527 TCGAAAATATACTTCCTTTGCGAA 57.028 33.333 0.00 0.00 37.08 4.70
3277 7066 6.768078 TCGAAAATATACTTCCTTTGCGAAC 58.232 36.000 0.00 0.00 37.08 3.95
3278 7067 5.671140 CGAAAATATACTTCCTTTGCGAACG 59.329 40.000 0.00 0.00 33.67 3.95
3279 7068 6.490566 AAAATATACTTCCTTTGCGAACGT 57.509 33.333 0.00 0.00 0.00 3.99
3280 7069 6.490566 AAATATACTTCCTTTGCGAACGTT 57.509 33.333 0.00 0.00 0.00 3.99
3281 7070 5.713822 ATATACTTCCTTTGCGAACGTTC 57.286 39.130 18.47 18.47 0.00 3.95
3290 7079 3.755404 CGAACGTTCGCTGAGAGG 58.245 61.111 34.54 9.32 44.26 3.69
3291 7080 1.801913 CGAACGTTCGCTGAGAGGG 60.802 63.158 34.54 8.59 44.26 4.30
3292 7081 2.048127 AACGTTCGCTGAGAGGGC 60.048 61.111 0.00 0.00 0.00 5.19
3293 7082 2.493907 GAACGTTCGCTGAGAGGGCT 62.494 60.000 13.36 0.00 0.00 5.19
3294 7083 1.248785 AACGTTCGCTGAGAGGGCTA 61.249 55.000 0.00 0.00 0.00 3.93
3295 7084 1.248785 ACGTTCGCTGAGAGGGCTAA 61.249 55.000 0.00 0.00 0.00 3.09
3296 7085 0.526524 CGTTCGCTGAGAGGGCTAAG 60.527 60.000 0.00 0.00 0.00 2.18
3297 7086 0.179097 GTTCGCTGAGAGGGCTAAGG 60.179 60.000 0.00 0.00 0.00 2.69
3298 7087 1.961180 TTCGCTGAGAGGGCTAAGGC 61.961 60.000 0.00 0.00 37.82 4.35
3309 7098 2.203070 CTAAGGCCGCGCTTGGAT 60.203 61.111 5.56 0.00 0.00 3.41
3310 7099 1.819632 CTAAGGCCGCGCTTGGATT 60.820 57.895 5.56 1.77 0.00 3.01
3311 7100 2.051804 CTAAGGCCGCGCTTGGATTG 62.052 60.000 5.56 0.00 0.00 2.67
3312 7101 2.813226 TAAGGCCGCGCTTGGATTGT 62.813 55.000 5.56 0.00 0.00 2.71
3313 7102 4.179579 GGCCGCGCTTGGATTGTC 62.180 66.667 5.56 0.00 0.00 3.18
3314 7103 4.520846 GCCGCGCTTGGATTGTCG 62.521 66.667 5.56 0.00 0.00 4.35
3315 7104 3.118454 CCGCGCTTGGATTGTCGT 61.118 61.111 5.56 0.00 0.00 4.34
3316 7105 2.677003 CCGCGCTTGGATTGTCGTT 61.677 57.895 5.56 0.00 0.00 3.85
3317 7106 1.206578 CGCGCTTGGATTGTCGTTT 59.793 52.632 5.56 0.00 0.00 3.60
3318 7107 0.385473 CGCGCTTGGATTGTCGTTTT 60.385 50.000 5.56 0.00 0.00 2.43
3319 7108 1.327507 GCGCTTGGATTGTCGTTTTC 58.672 50.000 0.00 0.00 0.00 2.29
3320 7109 1.963747 CGCTTGGATTGTCGTTTTCC 58.036 50.000 0.00 0.00 0.00 3.13
3321 7110 1.265635 CGCTTGGATTGTCGTTTTCCA 59.734 47.619 0.00 0.00 37.76 3.53
3322 7111 2.665519 CGCTTGGATTGTCGTTTTCCAG 60.666 50.000 0.00 0.00 40.48 3.86
3323 7112 2.922335 GCTTGGATTGTCGTTTTCCAGC 60.922 50.000 0.00 0.00 40.48 4.85
3324 7113 0.871722 TGGATTGTCGTTTTCCAGCG 59.128 50.000 0.00 0.00 34.65 5.18
3325 7114 0.168128 GGATTGTCGTTTTCCAGCGG 59.832 55.000 0.00 0.00 0.00 5.52
3326 7115 0.872388 GATTGTCGTTTTCCAGCGGT 59.128 50.000 0.00 0.00 0.00 5.68
3327 7116 1.265905 GATTGTCGTTTTCCAGCGGTT 59.734 47.619 0.00 0.00 0.00 4.44
3328 7117 1.096416 TTGTCGTTTTCCAGCGGTTT 58.904 45.000 0.00 0.00 0.00 3.27
3329 7118 1.950828 TGTCGTTTTCCAGCGGTTTA 58.049 45.000 0.00 0.00 0.00 2.01
3330 7119 1.598601 TGTCGTTTTCCAGCGGTTTAC 59.401 47.619 0.00 0.00 0.00 2.01
3331 7120 1.598601 GTCGTTTTCCAGCGGTTTACA 59.401 47.619 0.00 0.00 0.00 2.41
3332 7121 1.598601 TCGTTTTCCAGCGGTTTACAC 59.401 47.619 0.00 0.00 0.00 2.90
3333 7122 1.658094 CGTTTTCCAGCGGTTTACACG 60.658 52.381 0.00 0.00 0.00 4.49
3340 7129 3.640231 CGGTTTACACGCGGGAAA 58.360 55.556 19.19 8.29 0.00 3.13
3341 7130 1.940334 CGGTTTACACGCGGGAAAA 59.060 52.632 19.19 5.99 0.00 2.29
3342 7131 0.307146 CGGTTTACACGCGGGAAAAA 59.693 50.000 19.19 12.80 0.00 1.94
3343 7132 1.069091 CGGTTTACACGCGGGAAAAAT 60.069 47.619 19.19 0.00 0.00 1.82
3344 7133 2.159234 CGGTTTACACGCGGGAAAAATA 59.841 45.455 19.19 0.00 0.00 1.40
3345 7134 3.491356 GGTTTACACGCGGGAAAAATAC 58.509 45.455 19.19 8.85 0.00 1.89
3346 7135 3.155243 GTTTACACGCGGGAAAAATACG 58.845 45.455 19.19 0.00 0.00 3.06
3354 7143 2.830772 GGGAAAAATACGCCCGTAAC 57.169 50.000 4.53 0.00 33.99 2.50
3355 7144 2.083002 GGGAAAAATACGCCCGTAACA 58.917 47.619 4.53 0.00 33.99 2.41
3356 7145 2.487372 GGGAAAAATACGCCCGTAACAA 59.513 45.455 4.53 0.00 33.99 2.83
3357 7146 3.057666 GGGAAAAATACGCCCGTAACAAA 60.058 43.478 4.53 0.00 33.99 2.83
3358 7147 4.544651 GGAAAAATACGCCCGTAACAAAA 58.455 39.130 4.53 0.00 33.99 2.44
3359 7148 4.981054 GGAAAAATACGCCCGTAACAAAAA 59.019 37.500 4.53 0.00 33.99 1.94
3360 7149 5.107913 GGAAAAATACGCCCGTAACAAAAAC 60.108 40.000 4.53 0.00 33.99 2.43
3361 7150 3.557577 AATACGCCCGTAACAAAAACC 57.442 42.857 4.53 0.00 33.99 3.27
3362 7151 2.252976 TACGCCCGTAACAAAAACCT 57.747 45.000 0.00 0.00 0.00 3.50
3363 7152 2.252976 ACGCCCGTAACAAAAACCTA 57.747 45.000 0.00 0.00 0.00 3.08
3364 7153 2.570135 ACGCCCGTAACAAAAACCTAA 58.430 42.857 0.00 0.00 0.00 2.69
3365 7154 2.948315 ACGCCCGTAACAAAAACCTAAA 59.052 40.909 0.00 0.00 0.00 1.85
3366 7155 3.379688 ACGCCCGTAACAAAAACCTAAAA 59.620 39.130 0.00 0.00 0.00 1.52
3367 7156 4.037803 ACGCCCGTAACAAAAACCTAAAAT 59.962 37.500 0.00 0.00 0.00 1.82
3368 7157 4.618067 CGCCCGTAACAAAAACCTAAAATC 59.382 41.667 0.00 0.00 0.00 2.17
3369 7158 5.563280 CGCCCGTAACAAAAACCTAAAATCT 60.563 40.000 0.00 0.00 0.00 2.40
3370 7159 6.218019 GCCCGTAACAAAAACCTAAAATCTT 58.782 36.000 0.00 0.00 0.00 2.40
3371 7160 7.369607 GCCCGTAACAAAAACCTAAAATCTTA 58.630 34.615 0.00 0.00 0.00 2.10
3372 7161 7.866898 GCCCGTAACAAAAACCTAAAATCTTAA 59.133 33.333 0.00 0.00 0.00 1.85
3373 7162 9.747293 CCCGTAACAAAAACCTAAAATCTTAAA 57.253 29.630 0.00 0.00 0.00 1.52
3382 7171 6.944557 ACCTAAAATCTTAAAAATGCACGC 57.055 33.333 0.00 0.00 0.00 5.34
3383 7172 5.571357 ACCTAAAATCTTAAAAATGCACGCG 59.429 36.000 3.53 3.53 0.00 6.01
3384 7173 3.970828 AAATCTTAAAAATGCACGCGC 57.029 38.095 5.73 0.00 39.24 6.86
3393 7182 2.866750 TGCACGCGCACTATTTGG 59.133 55.556 5.73 0.00 45.36 3.28
3394 7183 2.576847 GCACGCGCACTATTTGGC 60.577 61.111 5.73 0.00 38.36 4.52
3395 7184 2.866750 CACGCGCACTATTTGGCA 59.133 55.556 5.73 0.00 0.00 4.92
3396 7185 1.208870 CACGCGCACTATTTGGCAA 59.791 52.632 5.73 0.00 0.00 4.52
3397 7186 0.794229 CACGCGCACTATTTGGCAAG 60.794 55.000 5.73 0.00 0.00 4.01
3398 7187 0.953471 ACGCGCACTATTTGGCAAGA 60.953 50.000 5.73 0.00 0.00 3.02
3399 7188 0.521242 CGCGCACTATTTGGCAAGAC 60.521 55.000 8.75 0.00 0.00 3.01
3400 7189 0.179163 GCGCACTATTTGGCAAGACC 60.179 55.000 0.30 0.00 39.84 3.85
3401 7190 0.096976 CGCACTATTTGGCAAGACCG 59.903 55.000 0.00 0.00 43.94 4.79
3402 7191 1.448985 GCACTATTTGGCAAGACCGA 58.551 50.000 0.00 0.00 43.94 4.69
3403 7192 1.398390 GCACTATTTGGCAAGACCGAG 59.602 52.381 0.00 0.00 43.94 4.63
3404 7193 1.398390 CACTATTTGGCAAGACCGAGC 59.602 52.381 0.00 0.00 43.94 5.03
3405 7194 0.652592 CTATTTGGCAAGACCGAGCG 59.347 55.000 0.00 0.00 43.94 5.03
3406 7195 0.742990 TATTTGGCAAGACCGAGCGG 60.743 55.000 7.48 7.48 43.94 5.52
3427 7216 2.355244 GCTCCTAGCCGCACGATC 60.355 66.667 0.00 0.00 34.48 3.69
3428 7217 2.851071 GCTCCTAGCCGCACGATCT 61.851 63.158 0.00 0.00 34.48 2.75
3429 7218 1.284408 CTCCTAGCCGCACGATCTC 59.716 63.158 0.00 0.00 0.00 2.75
3430 7219 1.152943 TCCTAGCCGCACGATCTCT 60.153 57.895 0.00 0.00 0.00 3.10
3431 7220 1.167155 TCCTAGCCGCACGATCTCTC 61.167 60.000 0.00 0.00 0.00 3.20
3440 7229 4.978773 CGATCTCTCGGTGTCGTC 57.021 61.111 0.00 0.00 41.27 4.20
3441 7230 1.352404 CGATCTCTCGGTGTCGTCC 59.648 63.158 0.00 0.00 41.27 4.79
3442 7231 1.728672 GATCTCTCGGTGTCGTCCC 59.271 63.158 0.00 0.00 37.69 4.46
3443 7232 1.001269 ATCTCTCGGTGTCGTCCCA 60.001 57.895 0.00 0.00 37.69 4.37
3444 7233 1.313812 ATCTCTCGGTGTCGTCCCAC 61.314 60.000 0.00 0.00 37.69 4.61
3450 7239 2.357517 GTGTCGTCCCACCTGCAG 60.358 66.667 6.78 6.78 0.00 4.41
3451 7240 3.625897 TGTCGTCCCACCTGCAGG 61.626 66.667 31.60 31.60 42.17 4.85
3461 7250 4.308526 CCTGCAGGTGCTACTTGG 57.691 61.111 25.53 0.00 42.66 3.61
3462 7251 1.376466 CCTGCAGGTGCTACTTGGT 59.624 57.895 25.53 0.00 42.66 3.67
3463 7252 0.674895 CCTGCAGGTGCTACTTGGTC 60.675 60.000 25.53 0.00 42.66 4.02
3464 7253 1.005037 TGCAGGTGCTACTTGGTCG 60.005 57.895 3.18 0.00 42.66 4.79
3465 7254 1.741770 GCAGGTGCTACTTGGTCGG 60.742 63.158 0.00 0.00 38.21 4.79
3466 7255 1.079127 CAGGTGCTACTTGGTCGGG 60.079 63.158 0.00 0.00 0.00 5.14
3467 7256 2.267961 GGTGCTACTTGGTCGGGG 59.732 66.667 0.00 0.00 0.00 5.73
3468 7257 2.267961 GTGCTACTTGGTCGGGGG 59.732 66.667 0.00 0.00 0.00 5.40
3469 7258 2.120940 TGCTACTTGGTCGGGGGA 59.879 61.111 0.00 0.00 0.00 4.81
3470 7259 1.987855 TGCTACTTGGTCGGGGGAG 60.988 63.158 0.00 0.00 0.00 4.30
3471 7260 1.684734 GCTACTTGGTCGGGGGAGA 60.685 63.158 0.00 0.00 0.00 3.71
3472 7261 1.957765 GCTACTTGGTCGGGGGAGAC 61.958 65.000 0.00 0.00 40.25 3.36
3473 7262 0.613853 CTACTTGGTCGGGGGAGACA 60.614 60.000 0.00 0.00 42.62 3.41
3474 7263 0.901580 TACTTGGTCGGGGGAGACAC 60.902 60.000 0.00 0.00 42.62 3.67
3475 7264 1.913762 CTTGGTCGGGGGAGACACT 60.914 63.158 0.00 0.00 42.62 3.55
3476 7265 1.889530 CTTGGTCGGGGGAGACACTC 61.890 65.000 0.00 0.00 42.62 3.51
3477 7266 3.450115 GGTCGGGGGAGACACTCG 61.450 72.222 0.00 0.00 42.62 4.18
3478 7267 4.131088 GTCGGGGGAGACACTCGC 62.131 72.222 7.18 7.18 41.74 5.03
3479 7268 4.361971 TCGGGGGAGACACTCGCT 62.362 66.667 13.68 0.00 42.06 4.93
3480 7269 2.439701 CGGGGGAGACACTCGCTA 60.440 66.667 13.68 0.00 42.06 4.26
3481 7270 2.772691 CGGGGGAGACACTCGCTAC 61.773 68.421 13.68 7.87 42.06 3.58
3482 7271 2.772691 GGGGGAGACACTCGCTACG 61.773 68.421 13.68 0.00 42.06 3.51
3483 7272 2.102553 GGGAGACACTCGCTACGC 59.897 66.667 8.24 0.00 39.79 4.42
3501 7290 2.126914 GCGACATGCGATTACTCTCT 57.873 50.000 12.67 0.00 44.57 3.10
3502 7291 2.047769 GCGACATGCGATTACTCTCTC 58.952 52.381 12.67 0.00 44.57 3.20
3503 7292 2.302662 CGACATGCGATTACTCTCTCG 58.697 52.381 3.85 0.00 44.57 4.04
3504 7293 2.286477 CGACATGCGATTACTCTCTCGT 60.286 50.000 3.85 0.00 44.57 4.18
3505 7294 3.293262 GACATGCGATTACTCTCTCGTC 58.707 50.000 0.00 0.00 37.23 4.20
3506 7295 2.033550 ACATGCGATTACTCTCTCGTCC 59.966 50.000 0.00 0.00 37.23 4.79
3507 7296 2.039818 TGCGATTACTCTCTCGTCCT 57.960 50.000 0.00 0.00 37.23 3.85
3508 7297 2.366533 TGCGATTACTCTCTCGTCCTT 58.633 47.619 0.00 0.00 37.23 3.36
3509 7298 2.753452 TGCGATTACTCTCTCGTCCTTT 59.247 45.455 0.00 0.00 37.23 3.11
3510 7299 3.192844 TGCGATTACTCTCTCGTCCTTTT 59.807 43.478 0.00 0.00 37.23 2.27
3511 7300 4.174762 GCGATTACTCTCTCGTCCTTTTT 58.825 43.478 0.00 0.00 37.23 1.94
3529 7318 3.611766 TTTTCTCGACTGATTCCCTCC 57.388 47.619 0.00 0.00 0.00 4.30
3530 7319 1.486211 TTCTCGACTGATTCCCTCCC 58.514 55.000 0.00 0.00 0.00 4.30
3531 7320 0.752009 TCTCGACTGATTCCCTCCCG 60.752 60.000 0.00 0.00 0.00 5.14
3532 7321 2.107141 CGACTGATTCCCTCCCGC 59.893 66.667 0.00 0.00 0.00 6.13
3533 7322 2.107141 GACTGATTCCCTCCCGCG 59.893 66.667 0.00 0.00 0.00 6.46
3534 7323 3.447025 GACTGATTCCCTCCCGCGG 62.447 68.421 21.04 21.04 0.00 6.46
3535 7324 4.918201 CTGATTCCCTCCCGCGGC 62.918 72.222 22.85 3.47 0.00 6.53
3556 7345 4.416738 GCCCCTGCTTCTCGCCTT 62.417 66.667 0.00 0.00 38.05 4.35
3557 7346 2.124942 CCCCTGCTTCTCGCCTTC 60.125 66.667 0.00 0.00 38.05 3.46
3558 7347 2.124942 CCCTGCTTCTCGCCTTCC 60.125 66.667 0.00 0.00 38.05 3.46
3559 7348 2.664081 CCCTGCTTCTCGCCTTCCT 61.664 63.158 0.00 0.00 38.05 3.36
3560 7349 1.298014 CCTGCTTCTCGCCTTCCTT 59.702 57.895 0.00 0.00 38.05 3.36
3561 7350 0.742635 CCTGCTTCTCGCCTTCCTTC 60.743 60.000 0.00 0.00 38.05 3.46
3562 7351 0.742635 CTGCTTCTCGCCTTCCTTCC 60.743 60.000 0.00 0.00 38.05 3.46
3563 7352 1.450491 GCTTCTCGCCTTCCTTCCC 60.450 63.158 0.00 0.00 0.00 3.97
3564 7353 1.222113 CTTCTCGCCTTCCTTCCCC 59.778 63.158 0.00 0.00 0.00 4.81
3565 7354 1.537889 TTCTCGCCTTCCTTCCCCA 60.538 57.895 0.00 0.00 0.00 4.96
3566 7355 0.914417 TTCTCGCCTTCCTTCCCCAT 60.914 55.000 0.00 0.00 0.00 4.00
3567 7356 1.153086 CTCGCCTTCCTTCCCCATG 60.153 63.158 0.00 0.00 0.00 3.66
3568 7357 2.124151 CGCCTTCCTTCCCCATGG 60.124 66.667 4.14 4.14 0.00 3.66
3569 7358 2.983879 CGCCTTCCTTCCCCATGGT 61.984 63.158 11.73 0.00 0.00 3.55
3570 7359 1.380380 GCCTTCCTTCCCCATGGTG 60.380 63.158 11.73 0.00 0.00 4.17
3571 7360 1.380380 CCTTCCTTCCCCATGGTGC 60.380 63.158 11.73 0.00 0.00 5.01
3572 7361 1.380380 CTTCCTTCCCCATGGTGCC 60.380 63.158 11.73 0.00 0.00 5.01
3573 7362 3.280938 TTCCTTCCCCATGGTGCCG 62.281 63.158 11.73 0.00 0.00 5.69
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.434336 CCCGAAGTCTGATGGTGGAATA 59.566 50.000 0.00 0.00 0.00 1.75
33 34 1.032014 TCTTGGTGGAAGCTTTGTGC 58.968 50.000 0.00 0.00 43.29 4.57
82 84 1.003812 CACGGTTTTGGTGGGGAGATA 59.996 52.381 0.00 0.00 0.00 1.98
208 212 7.286546 TGGATGGAAAAACAACTTTCTACATGA 59.713 33.333 0.00 0.00 35.91 3.07
210 214 7.595819 TGGATGGAAAAACAACTTTCTACAT 57.404 32.000 0.00 0.00 35.91 2.29
308 313 5.450818 TTCAGATAAATACTTGGGCCTGT 57.549 39.130 4.53 6.54 0.00 4.00
422 430 8.870160 TTGTGAAAATTCAGGACAATTTGTAG 57.130 30.769 1.15 0.00 36.33 2.74
521 529 9.166173 CACCATCAGTCTCACATCTTTTATTTA 57.834 33.333 0.00 0.00 0.00 1.40
590 598 5.787953 TTTCCTGATTTGTGCAGATGAAA 57.212 34.783 0.00 0.00 35.39 2.69
612 644 5.338300 GGCAAGGTGACCCATTATCATTTTT 60.338 40.000 0.00 0.00 0.00 1.94
616 648 2.749466 CGGCAAGGTGACCCATTATCAT 60.749 50.000 0.00 0.00 0.00 2.45
645 681 7.387948 AGAGACTAACATGTTTACACCATCAAC 59.612 37.037 17.78 3.87 0.00 3.18
664 700 3.679980 GCGCTTCAATTCACAAGAGACTA 59.320 43.478 0.00 0.00 0.00 2.59
696 732 2.158827 TGGCTTGTGTTAGCTCAGTCAA 60.159 45.455 0.00 0.00 40.99 3.18
719 755 4.130286 ACATCTAGGCAGCAACTAACTC 57.870 45.455 0.00 0.00 0.00 3.01
720 756 4.508662 GAACATCTAGGCAGCAACTAACT 58.491 43.478 0.00 0.00 0.00 2.24
721 757 3.623510 GGAACATCTAGGCAGCAACTAAC 59.376 47.826 0.00 0.00 0.00 2.34
722 758 3.263170 TGGAACATCTAGGCAGCAACTAA 59.737 43.478 0.00 0.00 0.00 2.24
723 759 2.837591 TGGAACATCTAGGCAGCAACTA 59.162 45.455 0.00 0.00 0.00 2.24
724 760 1.630369 TGGAACATCTAGGCAGCAACT 59.370 47.619 0.00 0.00 0.00 3.16
725 761 2.113860 TGGAACATCTAGGCAGCAAC 57.886 50.000 0.00 0.00 0.00 4.17
726 762 2.877097 TTGGAACATCTAGGCAGCAA 57.123 45.000 0.00 0.00 39.30 3.91
727 763 2.877097 TTTGGAACATCTAGGCAGCA 57.123 45.000 0.00 0.00 39.30 4.41
728 764 3.674410 GCTTTTTGGAACATCTAGGCAGC 60.674 47.826 0.00 0.00 39.30 5.25
729 765 3.119352 GGCTTTTTGGAACATCTAGGCAG 60.119 47.826 0.00 0.00 39.30 4.85
730 766 2.825532 GGCTTTTTGGAACATCTAGGCA 59.174 45.455 0.00 0.00 39.30 4.75
731 767 2.166459 GGGCTTTTTGGAACATCTAGGC 59.834 50.000 0.00 0.00 39.30 3.93
732 768 2.760650 GGGGCTTTTTGGAACATCTAGG 59.239 50.000 0.00 0.00 39.30 3.02
733 769 3.445096 CAGGGGCTTTTTGGAACATCTAG 59.555 47.826 0.00 0.00 39.30 2.43
734 770 3.181423 ACAGGGGCTTTTTGGAACATCTA 60.181 43.478 0.00 0.00 39.30 1.98
735 771 2.250924 CAGGGGCTTTTTGGAACATCT 58.749 47.619 0.00 0.00 39.30 2.90
736 772 1.970640 ACAGGGGCTTTTTGGAACATC 59.029 47.619 0.00 0.00 39.30 3.06
737 773 2.101640 ACAGGGGCTTTTTGGAACAT 57.898 45.000 0.00 0.00 39.30 2.71
738 774 2.757894 TACAGGGGCTTTTTGGAACA 57.242 45.000 0.00 0.00 0.00 3.18
739 775 3.161866 TCATACAGGGGCTTTTTGGAAC 58.838 45.455 0.00 0.00 0.00 3.62
740 776 3.534357 TCATACAGGGGCTTTTTGGAA 57.466 42.857 0.00 0.00 0.00 3.53
741 777 3.756082 ATCATACAGGGGCTTTTTGGA 57.244 42.857 0.00 0.00 0.00 3.53
742 778 4.824479 AAATCATACAGGGGCTTTTTGG 57.176 40.909 0.00 0.00 0.00 3.28
773 809 4.771577 TGTGATCACATACATGGGCTTTTT 59.228 37.500 24.56 0.00 36.21 1.94
774 810 4.158394 GTGTGATCACATACATGGGCTTTT 59.842 41.667 30.10 0.00 43.97 2.27
775 811 3.696051 GTGTGATCACATACATGGGCTTT 59.304 43.478 30.10 0.00 43.97 3.51
776 812 3.282021 GTGTGATCACATACATGGGCTT 58.718 45.455 30.10 0.00 43.97 4.35
777 813 2.742856 CGTGTGATCACATACATGGGCT 60.743 50.000 30.10 0.00 43.97 5.19
778 814 1.599071 CGTGTGATCACATACATGGGC 59.401 52.381 30.10 14.22 43.97 5.36
779 815 2.905075 ACGTGTGATCACATACATGGG 58.095 47.619 30.10 15.49 43.97 4.00
780 816 6.603237 AAATACGTGTGATCACATACATGG 57.397 37.500 30.10 17.00 43.97 3.66
781 817 6.411782 GCAAAATACGTGTGATCACATACATG 59.588 38.462 30.10 21.18 43.97 3.21
782 818 6.458206 GGCAAAATACGTGTGATCACATACAT 60.458 38.462 30.10 19.33 43.97 2.29
783 819 5.163804 GGCAAAATACGTGTGATCACATACA 60.164 40.000 30.10 18.04 43.97 2.29
784 820 5.163804 TGGCAAAATACGTGTGATCACATAC 60.164 40.000 30.10 17.70 43.97 2.39
785 821 4.938226 TGGCAAAATACGTGTGATCACATA 59.062 37.500 30.10 19.84 43.97 2.29
786 822 3.755905 TGGCAAAATACGTGTGATCACAT 59.244 39.130 30.10 18.31 43.97 3.21
787 823 3.142174 TGGCAAAATACGTGTGATCACA 58.858 40.909 24.56 24.56 44.02 3.58
788 824 3.822594 TGGCAAAATACGTGTGATCAC 57.177 42.857 19.27 19.27 40.79 3.06
789 825 4.006319 TGATGGCAAAATACGTGTGATCA 58.994 39.130 0.00 0.00 0.00 2.92
790 826 4.614555 TGATGGCAAAATACGTGTGATC 57.385 40.909 0.00 0.00 0.00 2.92
791 827 4.142403 CCTTGATGGCAAAATACGTGTGAT 60.142 41.667 0.00 0.00 32.73 3.06
792 828 3.190327 CCTTGATGGCAAAATACGTGTGA 59.810 43.478 0.00 0.00 32.73 3.58
793 829 3.500982 CCTTGATGGCAAAATACGTGTG 58.499 45.455 0.00 0.00 32.73 3.82
794 830 3.848272 CCTTGATGGCAAAATACGTGT 57.152 42.857 0.00 0.00 32.73 4.49
821 857 1.302993 TTTACGGGCCTCTTGGTGC 60.303 57.895 0.84 0.00 35.27 5.01
822 858 1.305930 GCTTTACGGGCCTCTTGGTG 61.306 60.000 0.84 0.00 35.27 4.17
823 859 1.002502 GCTTTACGGGCCTCTTGGT 60.003 57.895 0.84 0.00 35.27 3.67
824 860 1.749258 GGCTTTACGGGCCTCTTGG 60.749 63.158 0.84 0.00 45.57 3.61
825 861 3.905249 GGCTTTACGGGCCTCTTG 58.095 61.111 0.84 0.00 45.57 3.02
831 867 2.571757 GCTTTGGGCTTTACGGGC 59.428 61.111 0.00 0.00 38.06 6.13
832 868 2.348104 GGGCTTTGGGCTTTACGGG 61.348 63.158 0.00 0.00 41.46 5.28
833 869 0.970427 ATGGGCTTTGGGCTTTACGG 60.970 55.000 0.00 0.00 41.46 4.02
834 870 0.455815 GATGGGCTTTGGGCTTTACG 59.544 55.000 0.00 0.00 41.46 3.18
835 871 0.824109 GGATGGGCTTTGGGCTTTAC 59.176 55.000 0.00 0.00 41.46 2.01
836 872 0.709992 AGGATGGGCTTTGGGCTTTA 59.290 50.000 0.00 0.00 41.46 1.85
837 873 0.709992 TAGGATGGGCTTTGGGCTTT 59.290 50.000 0.00 0.00 41.46 3.51
838 874 0.709992 TTAGGATGGGCTTTGGGCTT 59.290 50.000 0.00 0.00 41.46 4.35
839 875 0.033109 GTTAGGATGGGCTTTGGGCT 60.033 55.000 0.00 0.00 41.46 5.19
840 876 1.043116 GGTTAGGATGGGCTTTGGGC 61.043 60.000 0.00 0.00 40.90 5.36
841 877 0.751643 CGGTTAGGATGGGCTTTGGG 60.752 60.000 0.00 0.00 0.00 4.12
842 878 0.254747 TCGGTTAGGATGGGCTTTGG 59.745 55.000 0.00 0.00 0.00 3.28
843 879 1.339631 TGTCGGTTAGGATGGGCTTTG 60.340 52.381 0.00 0.00 0.00 2.77
844 880 0.988832 TGTCGGTTAGGATGGGCTTT 59.011 50.000 0.00 0.00 0.00 3.51
845 881 1.141053 GATGTCGGTTAGGATGGGCTT 59.859 52.381 0.00 0.00 0.00 4.35
846 882 0.759346 GATGTCGGTTAGGATGGGCT 59.241 55.000 0.00 0.00 0.00 5.19
847 883 0.600255 CGATGTCGGTTAGGATGGGC 60.600 60.000 0.00 0.00 35.37 5.36
848 884 1.000163 CTCGATGTCGGTTAGGATGGG 60.000 57.143 2.25 0.00 40.29 4.00
855 891 1.404391 GAGGCTTCTCGATGTCGGTTA 59.596 52.381 2.25 0.00 40.29 2.85
912 954 0.036022 TTGCGATGGATGTGTGTGGA 59.964 50.000 0.00 0.00 0.00 4.02
919 961 0.461135 GGGCAATTTGCGATGGATGT 59.539 50.000 14.83 0.00 46.21 3.06
935 977 4.048470 GGGGGAACAGAGGTGGGC 62.048 72.222 0.00 0.00 0.00 5.36
949 991 0.032615 TTGGGGATTCGATTTGGGGG 60.033 55.000 0.00 0.00 0.00 5.40
993 1038 3.545481 GTGCGAGACATGGCGACG 61.545 66.667 14.92 14.92 31.83 5.12
1386 1467 0.390735 TGAGATCCTCGTCGTCGTCA 60.391 55.000 1.33 0.00 38.33 4.35
1536 1617 0.633921 CCTTCTCCTCCTCCTCCTCA 59.366 60.000 0.00 0.00 0.00 3.86
1537 1618 0.930726 TCCTTCTCCTCCTCCTCCTC 59.069 60.000 0.00 0.00 0.00 3.71
1538 1619 0.634465 GTCCTTCTCCTCCTCCTCCT 59.366 60.000 0.00 0.00 0.00 3.69
1539 1620 0.336737 TGTCCTTCTCCTCCTCCTCC 59.663 60.000 0.00 0.00 0.00 4.30
1552 1633 1.340114 GGGCGATTCCTTCTTGTCCTT 60.340 52.381 0.00 0.00 34.39 3.36
1557 1638 2.113860 TCTTGGGCGATTCCTTCTTG 57.886 50.000 0.00 0.00 34.39 3.02
1572 1653 5.653507 CTCTTCTCAGATGACTCCTTCTTG 58.346 45.833 0.00 0.00 0.00 3.02
1581 1662 3.550639 CCTCATCGCTCTTCTCAGATGAC 60.551 52.174 3.22 0.00 42.89 3.06
1601 1682 2.498078 GACGAATCCTTGTTCTCCTCCT 59.502 50.000 0.00 0.00 0.00 3.69
1679 1760 3.819337 ACGCCCTTTCTTTTTCTTCCTAC 59.181 43.478 0.00 0.00 0.00 3.18
1728 1809 2.176546 CGATGGGCACGCTTGTTG 59.823 61.111 0.00 0.00 0.00 3.33
1730 1811 2.742372 GACGATGGGCACGCTTGT 60.742 61.111 0.00 0.00 0.00 3.16
1765 1846 3.908476 TGCTATCACTCTCACTCTCCAT 58.092 45.455 0.00 0.00 0.00 3.41
1813 1894 6.916360 ATCCCTAGAATCTTCAGAGTCATC 57.084 41.667 7.01 0.00 41.18 2.92
1841 1922 0.873743 CCGCGATCTCTTGCTCCTTC 60.874 60.000 8.23 0.00 0.00 3.46
1842 1923 1.142748 CCGCGATCTCTTGCTCCTT 59.857 57.895 8.23 0.00 0.00 3.36
1857 1938 0.246635 TAGACTTCTTGTGCCTCCGC 59.753 55.000 0.00 0.00 0.00 5.54
1888 1969 1.953686 CTTCTTCCTCCTAGAGCTCCG 59.046 57.143 10.93 1.40 0.00 4.63
1929 2010 2.025155 TCCTCGGAGCTAACATCAGAC 58.975 52.381 0.00 0.00 0.00 3.51
1944 2025 0.818296 CTAACACCTCCACCTCCTCG 59.182 60.000 0.00 0.00 0.00 4.63
2208 2289 5.547666 ACCACCATAGCTAATATGACCATCA 59.452 40.000 0.00 0.00 43.54 3.07
2403 2484 5.836358 TGCACTATAAACCTGGTTTTCCTTT 59.164 36.000 28.10 7.25 41.38 3.11
2547 2628 3.623703 TGTAGCAGCAAATGGATCATGT 58.376 40.909 0.00 0.00 0.00 3.21
2563 2644 9.757227 AGAAATAATTACTCAGTCATCTGTAGC 57.243 33.333 0.00 0.00 41.91 3.58
2620 2701 8.807948 ACTACAGGAAAAACATGCATAACTAT 57.192 30.769 0.00 0.00 33.22 2.12
2804 2896 7.040409 GGCCATTCTATCTTATCGTTGGAAAAT 60.040 37.037 0.00 0.00 0.00 1.82
2808 2900 4.346709 TGGCCATTCTATCTTATCGTTGGA 59.653 41.667 0.00 0.00 0.00 3.53
2809 2901 4.641396 TGGCCATTCTATCTTATCGTTGG 58.359 43.478 0.00 0.00 0.00 3.77
2978 3084 7.201617 GGAGGGAGTAGATGTTAACAAAATTCG 60.202 40.741 13.23 0.00 0.00 3.34
3008 4593 1.373590 CCGCCGGTCACCTATTTTGG 61.374 60.000 1.90 0.00 0.00 3.28
3009 4594 0.675522 ACCGCCGGTCACCTATTTTG 60.676 55.000 1.02 0.00 0.00 2.44
3010 4595 0.675522 CACCGCCGGTCACCTATTTT 60.676 55.000 5.41 0.00 31.02 1.82
3018 6779 3.687102 CTACCACACCGCCGGTCA 61.687 66.667 5.41 0.00 36.69 4.02
3021 6782 4.143333 CCTCTACCACACCGCCGG 62.143 72.222 0.00 0.00 0.00 6.13
3093 6859 3.438781 ACAAATACAAGGGCACACATACG 59.561 43.478 0.00 0.00 0.00 3.06
3140 6906 5.251764 AGCTAACTGACAATGATTTGAGCT 58.748 37.500 0.00 0.00 36.64 4.09
3141 6907 5.557891 AGCTAACTGACAATGATTTGAGC 57.442 39.130 0.00 0.00 36.64 4.26
3157 6939 4.727235 AAAAACGAGCACAGTAGCTAAC 57.273 40.909 0.00 0.00 46.75 2.34
3184 6966 3.782244 GACCAGAGCGCTTGCGTG 61.782 66.667 13.26 7.22 45.69 5.34
3193 6975 3.106407 GCGTGACGTGACCAGAGC 61.106 66.667 6.91 0.00 0.00 4.09
3229 7018 6.245115 TCACATTTGCTGTCTGAATAGTTG 57.755 37.500 0.00 0.00 35.29 3.16
3240 7029 8.213518 AGTATATTTTCGATCACATTTGCTGT 57.786 30.769 0.00 0.00 39.20 4.40
3254 7043 5.671140 CGTTCGCAAAGGAAGTATATTTTCG 59.329 40.000 0.00 0.00 0.00 3.46
3261 7050 2.410730 CGAACGTTCGCAAAGGAAGTAT 59.589 45.455 34.54 0.00 44.26 2.12
3262 7051 1.788308 CGAACGTTCGCAAAGGAAGTA 59.212 47.619 34.54 0.00 44.26 2.24
3263 7052 0.580104 CGAACGTTCGCAAAGGAAGT 59.420 50.000 34.54 0.00 44.26 3.01
3264 7053 3.345087 CGAACGTTCGCAAAGGAAG 57.655 52.632 34.54 8.59 44.26 3.46
3274 7063 2.095252 GCCCTCTCAGCGAACGTTC 61.095 63.158 18.47 18.47 0.00 3.95
3275 7064 1.248785 TAGCCCTCTCAGCGAACGTT 61.249 55.000 0.00 0.00 34.64 3.99
3276 7065 1.248785 TTAGCCCTCTCAGCGAACGT 61.249 55.000 0.00 0.00 34.64 3.99
3277 7066 0.526524 CTTAGCCCTCTCAGCGAACG 60.527 60.000 0.00 0.00 34.64 3.95
3278 7067 0.179097 CCTTAGCCCTCTCAGCGAAC 60.179 60.000 0.00 0.00 34.64 3.95
3279 7068 1.961180 GCCTTAGCCCTCTCAGCGAA 61.961 60.000 0.00 0.00 34.64 4.70
3280 7069 2.427245 GCCTTAGCCCTCTCAGCGA 61.427 63.158 0.00 0.00 34.64 4.93
3281 7070 2.107953 GCCTTAGCCCTCTCAGCG 59.892 66.667 0.00 0.00 34.64 5.18
3292 7081 1.819632 AATCCAAGCGCGGCCTTAG 60.820 57.895 8.83 0.00 0.00 2.18
3293 7082 2.112198 CAATCCAAGCGCGGCCTTA 61.112 57.895 8.83 0.00 0.00 2.69
3294 7083 3.443045 CAATCCAAGCGCGGCCTT 61.443 61.111 8.83 0.00 0.00 4.35
3295 7084 4.722700 ACAATCCAAGCGCGGCCT 62.723 61.111 8.83 0.00 0.00 5.19
3296 7085 4.179579 GACAATCCAAGCGCGGCC 62.180 66.667 8.83 0.00 0.00 6.13
3297 7086 4.520846 CGACAATCCAAGCGCGGC 62.521 66.667 8.83 0.00 0.00 6.53
3298 7087 2.182614 AAACGACAATCCAAGCGCGG 62.183 55.000 8.83 0.00 0.00 6.46
3299 7088 0.385473 AAAACGACAATCCAAGCGCG 60.385 50.000 0.00 0.00 0.00 6.86
3300 7089 1.327507 GAAAACGACAATCCAAGCGC 58.672 50.000 0.00 0.00 0.00 5.92
3301 7090 1.265635 TGGAAAACGACAATCCAAGCG 59.734 47.619 0.00 0.00 40.19 4.68
3302 7091 2.922335 GCTGGAAAACGACAATCCAAGC 60.922 50.000 0.00 0.43 42.41 4.01
3303 7092 2.665519 CGCTGGAAAACGACAATCCAAG 60.666 50.000 0.00 0.00 42.41 3.61
3304 7093 1.265635 CGCTGGAAAACGACAATCCAA 59.734 47.619 0.00 0.00 42.41 3.53
3305 7094 0.871722 CGCTGGAAAACGACAATCCA 59.128 50.000 0.00 0.00 40.84 3.41
3306 7095 0.168128 CCGCTGGAAAACGACAATCC 59.832 55.000 0.00 0.00 0.00 3.01
3307 7096 0.872388 ACCGCTGGAAAACGACAATC 59.128 50.000 1.50 0.00 0.00 2.67
3308 7097 1.314730 AACCGCTGGAAAACGACAAT 58.685 45.000 1.50 0.00 0.00 2.71
3309 7098 1.096416 AAACCGCTGGAAAACGACAA 58.904 45.000 1.50 0.00 0.00 3.18
3310 7099 1.598601 GTAAACCGCTGGAAAACGACA 59.401 47.619 1.50 0.00 0.00 4.35
3311 7100 1.598601 TGTAAACCGCTGGAAAACGAC 59.401 47.619 1.50 0.00 0.00 4.34
3312 7101 1.598601 GTGTAAACCGCTGGAAAACGA 59.401 47.619 1.50 0.00 0.00 3.85
3313 7102 1.658094 CGTGTAAACCGCTGGAAAACG 60.658 52.381 1.50 1.12 0.00 3.60
3314 7103 2.026915 CGTGTAAACCGCTGGAAAAC 57.973 50.000 1.50 0.00 0.00 2.43
3323 7112 0.307146 TTTTTCCCGCGTGTAAACCG 59.693 50.000 4.92 0.00 0.00 4.44
3324 7113 2.710220 ATTTTTCCCGCGTGTAAACC 57.290 45.000 4.92 0.00 0.00 3.27
3325 7114 3.155243 CGTATTTTTCCCGCGTGTAAAC 58.845 45.455 4.92 0.00 0.00 2.01
3326 7115 2.412585 GCGTATTTTTCCCGCGTGTAAA 60.413 45.455 4.92 0.00 37.89 2.01
3327 7116 1.128321 GCGTATTTTTCCCGCGTGTAA 59.872 47.619 4.92 0.00 37.89 2.41
3328 7117 0.720590 GCGTATTTTTCCCGCGTGTA 59.279 50.000 4.92 0.00 37.89 2.90
3329 7118 1.498611 GCGTATTTTTCCCGCGTGT 59.501 52.632 4.92 0.00 37.89 4.49
3330 7119 4.353218 GCGTATTTTTCCCGCGTG 57.647 55.556 4.92 0.00 37.89 5.34
3335 7124 2.083002 TGTTACGGGCGTATTTTTCCC 58.917 47.619 0.00 0.00 36.68 3.97
3336 7125 3.828060 TTGTTACGGGCGTATTTTTCC 57.172 42.857 0.00 0.00 0.00 3.13
3337 7126 5.107913 GGTTTTTGTTACGGGCGTATTTTTC 60.108 40.000 0.00 0.00 0.00 2.29
3338 7127 4.744137 GGTTTTTGTTACGGGCGTATTTTT 59.256 37.500 0.00 0.00 0.00 1.94
3339 7128 4.037803 AGGTTTTTGTTACGGGCGTATTTT 59.962 37.500 0.00 0.00 0.00 1.82
3340 7129 3.569277 AGGTTTTTGTTACGGGCGTATTT 59.431 39.130 0.00 0.00 0.00 1.40
3341 7130 3.148412 AGGTTTTTGTTACGGGCGTATT 58.852 40.909 0.00 0.00 0.00 1.89
3342 7131 2.781923 AGGTTTTTGTTACGGGCGTAT 58.218 42.857 0.00 0.00 0.00 3.06
3343 7132 2.252976 AGGTTTTTGTTACGGGCGTA 57.747 45.000 0.00 0.00 0.00 4.42
3344 7133 2.252976 TAGGTTTTTGTTACGGGCGT 57.747 45.000 0.00 0.00 0.00 5.68
3345 7134 3.622627 TTTAGGTTTTTGTTACGGGCG 57.377 42.857 0.00 0.00 0.00 6.13
3346 7135 5.775686 AGATTTTAGGTTTTTGTTACGGGC 58.224 37.500 0.00 0.00 0.00 6.13
3347 7136 9.747293 TTTAAGATTTTAGGTTTTTGTTACGGG 57.253 29.630 0.00 0.00 0.00 5.28
3356 7145 8.279800 GCGTGCATTTTTAAGATTTTAGGTTTT 58.720 29.630 0.00 0.00 0.00 2.43
3357 7146 7.358848 CGCGTGCATTTTTAAGATTTTAGGTTT 60.359 33.333 0.00 0.00 0.00 3.27
3358 7147 6.088883 CGCGTGCATTTTTAAGATTTTAGGTT 59.911 34.615 0.00 0.00 0.00 3.50
3359 7148 5.571357 CGCGTGCATTTTTAAGATTTTAGGT 59.429 36.000 0.00 0.00 0.00 3.08
3360 7149 5.498542 GCGCGTGCATTTTTAAGATTTTAGG 60.499 40.000 17.66 0.00 42.15 2.69
3361 7150 5.471962 GCGCGTGCATTTTTAAGATTTTAG 58.528 37.500 17.66 0.00 42.15 1.85
3362 7151 5.428793 GCGCGTGCATTTTTAAGATTTTA 57.571 34.783 17.66 0.00 42.15 1.52
3363 7152 4.306417 GCGCGTGCATTTTTAAGATTTT 57.694 36.364 17.66 0.00 42.15 1.82
3364 7153 3.970828 GCGCGTGCATTTTTAAGATTT 57.029 38.095 17.66 0.00 42.15 2.17
3377 7166 2.576847 GCCAAATAGTGCGCGTGC 60.577 61.111 15.48 15.48 43.20 5.34
3378 7167 0.794229 CTTGCCAAATAGTGCGCGTG 60.794 55.000 8.43 0.00 0.00 5.34
3379 7168 0.953471 TCTTGCCAAATAGTGCGCGT 60.953 50.000 8.43 0.00 0.00 6.01
3380 7169 0.521242 GTCTTGCCAAATAGTGCGCG 60.521 55.000 0.00 0.00 0.00 6.86
3381 7170 0.179163 GGTCTTGCCAAATAGTGCGC 60.179 55.000 0.00 0.00 37.17 6.09
3382 7171 0.096976 CGGTCTTGCCAAATAGTGCG 59.903 55.000 0.00 0.00 36.97 5.34
3383 7172 1.398390 CTCGGTCTTGCCAAATAGTGC 59.602 52.381 0.00 0.00 36.97 4.40
3384 7173 1.398390 GCTCGGTCTTGCCAAATAGTG 59.602 52.381 0.00 0.00 36.97 2.74
3385 7174 1.739067 GCTCGGTCTTGCCAAATAGT 58.261 50.000 0.00 0.00 36.97 2.12
3386 7175 0.652592 CGCTCGGTCTTGCCAAATAG 59.347 55.000 0.00 0.00 36.97 1.73
3387 7176 0.742990 CCGCTCGGTCTTGCCAAATA 60.743 55.000 0.00 0.00 36.97 1.40
3388 7177 2.040544 CCGCTCGGTCTTGCCAAAT 61.041 57.895 0.00 0.00 36.97 2.32
3389 7178 2.668212 CCGCTCGGTCTTGCCAAA 60.668 61.111 0.00 0.00 36.97 3.28
3410 7199 2.355244 GATCGTGCGGCTAGGAGC 60.355 66.667 0.00 0.00 41.46 4.70
3411 7200 1.169661 AGAGATCGTGCGGCTAGGAG 61.170 60.000 0.00 0.00 0.00 3.69
3412 7201 1.152943 AGAGATCGTGCGGCTAGGA 60.153 57.895 0.00 0.00 0.00 2.94
3413 7202 1.284408 GAGAGATCGTGCGGCTAGG 59.716 63.158 0.00 0.00 0.00 3.02
3414 7203 1.082431 CGAGAGATCGTGCGGCTAG 60.082 63.158 0.00 0.00 0.00 3.42
3415 7204 2.543802 CCGAGAGATCGTGCGGCTA 61.544 63.158 9.58 0.00 37.08 3.93
3416 7205 3.893763 CCGAGAGATCGTGCGGCT 61.894 66.667 9.58 0.00 37.08 5.52
3419 7208 1.583967 GACACCGAGAGATCGTGCG 60.584 63.158 0.00 0.00 0.00 5.34
3420 7209 1.583967 CGACACCGAGAGATCGTGC 60.584 63.158 0.00 0.00 38.22 5.34
3421 7210 1.794864 ACGACACCGAGAGATCGTG 59.205 57.895 0.00 0.00 45.50 4.35
3422 7211 4.298009 ACGACACCGAGAGATCGT 57.702 55.556 0.00 0.00 42.66 3.73
3423 7212 1.352404 GGACGACACCGAGAGATCG 59.648 63.158 0.00 0.00 40.39 3.69
3424 7213 1.030488 TGGGACGACACCGAGAGATC 61.030 60.000 0.00 0.00 39.50 2.75
3425 7214 1.001269 TGGGACGACACCGAGAGAT 60.001 57.895 0.00 0.00 39.50 2.75
3426 7215 1.970114 GTGGGACGACACCGAGAGA 60.970 63.158 0.00 0.00 39.50 3.10
3427 7216 2.567049 GTGGGACGACACCGAGAG 59.433 66.667 0.00 0.00 39.50 3.20
3433 7222 2.357517 CTGCAGGTGGGACGACAC 60.358 66.667 5.57 0.00 40.60 3.67
3434 7223 3.625897 CCTGCAGGTGGGACGACA 61.626 66.667 25.53 0.00 0.00 4.35
3444 7233 0.674895 GACCAAGTAGCACCTGCAGG 60.675 60.000 31.60 31.60 45.16 4.85
3445 7234 1.016130 CGACCAAGTAGCACCTGCAG 61.016 60.000 6.78 6.78 45.16 4.41
3446 7235 1.005037 CGACCAAGTAGCACCTGCA 60.005 57.895 0.00 0.00 45.16 4.41
3447 7236 1.741770 CCGACCAAGTAGCACCTGC 60.742 63.158 0.00 0.00 42.49 4.85
3448 7237 1.079127 CCCGACCAAGTAGCACCTG 60.079 63.158 0.00 0.00 0.00 4.00
3449 7238 2.291043 CCCCGACCAAGTAGCACCT 61.291 63.158 0.00 0.00 0.00 4.00
3450 7239 2.267961 CCCCGACCAAGTAGCACC 59.732 66.667 0.00 0.00 0.00 5.01
3451 7240 2.240162 CTCCCCCGACCAAGTAGCAC 62.240 65.000 0.00 0.00 0.00 4.40
3452 7241 1.987855 CTCCCCCGACCAAGTAGCA 60.988 63.158 0.00 0.00 0.00 3.49
3453 7242 1.684734 TCTCCCCCGACCAAGTAGC 60.685 63.158 0.00 0.00 0.00 3.58
3454 7243 0.613853 TGTCTCCCCCGACCAAGTAG 60.614 60.000 0.00 0.00 32.97 2.57
3455 7244 0.901580 GTGTCTCCCCCGACCAAGTA 60.902 60.000 0.00 0.00 32.97 2.24
3456 7245 2.203182 TGTCTCCCCCGACCAAGT 59.797 61.111 0.00 0.00 32.97 3.16
3457 7246 1.889530 GAGTGTCTCCCCCGACCAAG 61.890 65.000 0.00 0.00 32.97 3.61
3458 7247 1.911766 GAGTGTCTCCCCCGACCAA 60.912 63.158 0.00 0.00 32.97 3.67
3459 7248 2.283676 GAGTGTCTCCCCCGACCA 60.284 66.667 0.00 0.00 32.97 4.02
3460 7249 3.450115 CGAGTGTCTCCCCCGACC 61.450 72.222 0.00 0.00 32.97 4.79
3461 7250 4.131088 GCGAGTGTCTCCCCCGAC 62.131 72.222 0.00 0.00 34.52 4.79
3462 7251 2.975265 TAGCGAGTGTCTCCCCCGA 61.975 63.158 0.00 0.00 0.00 5.14
3463 7252 2.439701 TAGCGAGTGTCTCCCCCG 60.440 66.667 0.00 0.00 0.00 5.73
3464 7253 2.772691 CGTAGCGAGTGTCTCCCCC 61.773 68.421 0.00 0.00 0.00 5.40
3465 7254 2.799371 CGTAGCGAGTGTCTCCCC 59.201 66.667 0.00 0.00 0.00 4.81
3482 7271 2.047769 GAGAGAGTAATCGCATGTCGC 58.952 52.381 0.00 0.00 38.27 5.19
3483 7272 2.286477 ACGAGAGAGTAATCGCATGTCG 60.286 50.000 0.00 0.00 42.61 4.35
3484 7273 3.293262 GACGAGAGAGTAATCGCATGTC 58.707 50.000 0.00 0.24 42.61 3.06
3485 7274 2.033550 GGACGAGAGAGTAATCGCATGT 59.966 50.000 0.00 0.00 42.61 3.21
3486 7275 2.292016 AGGACGAGAGAGTAATCGCATG 59.708 50.000 0.00 0.00 42.61 4.06
3487 7276 2.577700 AGGACGAGAGAGTAATCGCAT 58.422 47.619 0.00 0.00 42.61 4.73
3488 7277 2.039818 AGGACGAGAGAGTAATCGCA 57.960 50.000 0.00 0.00 42.61 5.10
3489 7278 3.423996 AAAGGACGAGAGAGTAATCGC 57.576 47.619 0.00 0.00 42.61 4.58
3508 7297 3.307480 GGGAGGGAATCAGTCGAGAAAAA 60.307 47.826 0.00 0.00 0.00 1.94
3509 7298 2.236395 GGGAGGGAATCAGTCGAGAAAA 59.764 50.000 0.00 0.00 0.00 2.29
3510 7299 1.831736 GGGAGGGAATCAGTCGAGAAA 59.168 52.381 0.00 0.00 0.00 2.52
3511 7300 1.486211 GGGAGGGAATCAGTCGAGAA 58.514 55.000 0.00 0.00 0.00 2.87
3512 7301 0.752009 CGGGAGGGAATCAGTCGAGA 60.752 60.000 0.00 0.00 0.00 4.04
3513 7302 1.736586 CGGGAGGGAATCAGTCGAG 59.263 63.158 0.00 0.00 0.00 4.04
3514 7303 2.423898 GCGGGAGGGAATCAGTCGA 61.424 63.158 0.00 0.00 0.00 4.20
3515 7304 2.107141 GCGGGAGGGAATCAGTCG 59.893 66.667 0.00 0.00 0.00 4.18
3546 7335 1.222113 GGGGAAGGAAGGCGAGAAG 59.778 63.158 0.00 0.00 0.00 2.85
3547 7336 0.914417 ATGGGGAAGGAAGGCGAGAA 60.914 55.000 0.00 0.00 0.00 2.87
3548 7337 1.306997 ATGGGGAAGGAAGGCGAGA 60.307 57.895 0.00 0.00 0.00 4.04
3549 7338 1.153086 CATGGGGAAGGAAGGCGAG 60.153 63.158 0.00 0.00 0.00 5.03
3550 7339 2.679342 CCATGGGGAAGGAAGGCGA 61.679 63.158 2.85 0.00 35.59 5.54
3551 7340 2.124151 CCATGGGGAAGGAAGGCG 60.124 66.667 2.85 0.00 35.59 5.52
3552 7341 1.380380 CACCATGGGGAAGGAAGGC 60.380 63.158 18.09 0.00 38.05 4.35
3553 7342 1.380380 GCACCATGGGGAAGGAAGG 60.380 63.158 21.28 0.00 38.05 3.46
3554 7343 1.380380 GGCACCATGGGGAAGGAAG 60.380 63.158 21.28 0.00 38.05 3.46
3555 7344 2.770130 GGCACCATGGGGAAGGAA 59.230 61.111 21.28 0.00 38.05 3.36
3556 7345 3.727258 CGGCACCATGGGGAAGGA 61.727 66.667 21.28 0.00 38.05 3.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.