Multiple sequence alignment - TraesCS5A01G237300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G237300 chr5A 100.000 5670 0 0 1 5670 453008056 453002387 0.000000e+00 10471.0
1 TraesCS5A01G237300 chr5D 90.638 4924 267 77 1 4842 352823229 352828040 0.000000e+00 6360.0
2 TraesCS5A01G237300 chr5D 80.645 341 22 22 5369 5670 352829301 352829636 2.060000e-54 224.0
3 TraesCS5A01G237300 chr5D 95.833 48 1 1 5325 5371 422034956 422035003 6.090000e-10 76.8
4 TraesCS5A01G237300 chr5B 90.308 4798 260 81 130 4842 415794917 415799594 0.000000e+00 6095.0
5 TraesCS5A01G237300 chr5B 81.493 335 23 20 5370 5670 415800699 415801028 7.340000e-59 239.0
6 TraesCS5A01G237300 chr6B 97.778 45 1 0 5326 5370 229522214 229522258 1.690000e-10 78.7
7 TraesCS5A01G237300 chr3A 97.778 45 1 0 5325 5369 744438519 744438475 1.690000e-10 78.7
8 TraesCS5A01G237300 chr1B 97.727 44 1 0 5326 5369 325271811 325271768 6.090000e-10 76.8
9 TraesCS5A01G237300 chr1B 93.478 46 3 0 5324 5369 643566250 643566295 1.020000e-07 69.4
10 TraesCS5A01G237300 chr6D 97.619 42 1 0 5328 5369 58245375 58245416 7.880000e-09 73.1
11 TraesCS5A01G237300 chr6A 97.619 42 1 0 5328 5369 73561992 73562033 7.880000e-09 73.1
12 TraesCS5A01G237300 chr7B 93.478 46 3 0 5324 5369 668450276 668450231 1.020000e-07 69.4
13 TraesCS5A01G237300 chr1D 100.000 36 0 0 5334 5369 467003808 467003773 3.670000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G237300 chr5A 453002387 453008056 5669 True 10471 10471 100.0000 1 5670 1 chr5A.!!$R1 5669
1 TraesCS5A01G237300 chr5D 352823229 352829636 6407 False 3292 6360 85.6415 1 5670 2 chr5D.!!$F2 5669
2 TraesCS5A01G237300 chr5B 415794917 415801028 6111 False 3167 6095 85.9005 130 5670 2 chr5B.!!$F1 5540

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
324 360 0.179029 AACCTGAACCTGAACCACCG 60.179 55.0 0.00 0.00 0.0 4.94 F
1383 1472 0.108396 TGACCACACACCACATGAGG 59.892 55.0 7.74 7.74 0.0 3.86 F
2159 2262 0.536460 TTTCTCCGGGCTTTGTGGTC 60.536 55.0 0.00 0.00 0.0 4.02 F
2689 2792 0.546122 ACAAGTGGAACAGCTGGTGA 59.454 50.0 19.93 0.00 41.8 4.02 F
3907 4012 0.340208 AGTAAGAGCCCTACTGCCCT 59.660 55.0 0.00 0.00 0.0 5.19 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2177 2280 0.249911 ACGACACAAGTCCCTTGCTC 60.250 55.0 3.96 0.0 44.43 4.26 R
3162 3265 0.170561 TACGAACTCAGCCTCTTCGC 59.829 55.0 0.00 0.0 40.34 4.70 R
3813 3918 0.098376 GCTTCTGAATTGCAGCCTCG 59.902 55.0 0.00 0.0 44.52 4.63 R
4573 4687 0.593128 CCTTCCTGCAAAGGTGTTCG 59.407 55.0 8.77 0.0 40.86 3.95 R
5576 6637 0.040336 CGGAGGTCCATACGATGACG 60.040 60.0 0.00 0.0 39.84 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 2.106938 GGTCGCCATCATCGCTCA 59.893 61.111 0.00 0.00 0.00 4.26
26 27 1.521457 GGTCGCCATCATCGCTCAA 60.521 57.895 0.00 0.00 0.00 3.02
27 28 1.089481 GGTCGCCATCATCGCTCAAA 61.089 55.000 0.00 0.00 0.00 2.69
28 29 0.726827 GTCGCCATCATCGCTCAAAA 59.273 50.000 0.00 0.00 0.00 2.44
29 30 0.726827 TCGCCATCATCGCTCAAAAC 59.273 50.000 0.00 0.00 0.00 2.43
30 31 0.729116 CGCCATCATCGCTCAAAACT 59.271 50.000 0.00 0.00 0.00 2.66
31 32 1.267732 CGCCATCATCGCTCAAAACTC 60.268 52.381 0.00 0.00 0.00 3.01
43 51 3.814945 CTCAAAACTCTGCACGGATTTC 58.185 45.455 0.00 0.00 0.00 2.17
47 55 2.479566 ACTCTGCACGGATTTCATGT 57.520 45.000 0.00 0.00 0.00 3.21
52 60 4.323417 TCTGCACGGATTTCATGTTTAGT 58.677 39.130 0.00 0.00 0.00 2.24
59 67 7.627513 GCACGGATTTCATGTTTAGTCCATTTA 60.628 37.037 0.00 0.00 0.00 1.40
60 68 8.405531 CACGGATTTCATGTTTAGTCCATTTAT 58.594 33.333 0.00 0.00 0.00 1.40
92 102 8.601243 AAGATTCGCTAAATACGATTTGTTTG 57.399 30.769 0.00 0.00 39.65 2.93
94 104 4.654015 TCGCTAAATACGATTTGTTTGGC 58.346 39.130 0.00 0.00 36.40 4.52
96 106 3.789224 GCTAAATACGATTTGTTTGGCCG 59.211 43.478 0.00 0.00 34.51 6.13
98 108 2.116827 ATACGATTTGTTTGGCCGGA 57.883 45.000 5.05 0.00 0.00 5.14
99 109 1.158434 TACGATTTGTTTGGCCGGAC 58.842 50.000 5.05 0.56 0.00 4.79
102 112 0.898326 GATTTGTTTGGCCGGACCCT 60.898 55.000 3.83 0.00 37.83 4.34
103 113 1.184970 ATTTGTTTGGCCGGACCCTG 61.185 55.000 3.83 0.00 37.83 4.45
104 114 3.801068 TTGTTTGGCCGGACCCTGG 62.801 63.158 3.83 0.00 37.83 4.45
123 137 1.779025 GCAGCATAGCATGTGACGGG 61.779 60.000 0.00 0.00 0.00 5.28
125 139 1.153168 GCATAGCATGTGACGGGGT 60.153 57.895 0.00 0.00 0.00 4.95
140 154 1.827789 GGGTGAGCTTTGGTGCACA 60.828 57.895 20.43 1.62 33.09 4.57
173 187 2.736995 CCACCGAACGACGCACAT 60.737 61.111 0.00 0.00 41.07 3.21
174 188 2.726691 CCACCGAACGACGCACATC 61.727 63.158 0.00 0.00 41.07 3.06
175 189 2.431942 ACCGAACGACGCACATCC 60.432 61.111 0.00 0.00 41.07 3.51
195 219 2.124507 TACACCCCAAGCTCTGTGCC 62.125 60.000 0.00 0.00 44.23 5.01
315 351 1.077265 CCCCATGCAACCTGAACCT 59.923 57.895 0.00 0.00 0.00 3.50
316 352 1.252904 CCCCATGCAACCTGAACCTG 61.253 60.000 0.00 0.00 0.00 4.00
317 353 0.251297 CCCATGCAACCTGAACCTGA 60.251 55.000 0.00 0.00 0.00 3.86
319 355 1.270550 CCATGCAACCTGAACCTGAAC 59.729 52.381 0.00 0.00 0.00 3.18
320 356 1.270550 CATGCAACCTGAACCTGAACC 59.729 52.381 0.00 0.00 0.00 3.62
321 357 0.257328 TGCAACCTGAACCTGAACCA 59.743 50.000 0.00 0.00 0.00 3.67
322 358 0.668535 GCAACCTGAACCTGAACCAC 59.331 55.000 0.00 0.00 0.00 4.16
323 359 1.318576 CAACCTGAACCTGAACCACC 58.681 55.000 0.00 0.00 0.00 4.61
324 360 0.179029 AACCTGAACCTGAACCACCG 60.179 55.000 0.00 0.00 0.00 4.94
325 361 1.342672 ACCTGAACCTGAACCACCGT 61.343 55.000 0.00 0.00 0.00 4.83
326 362 0.602905 CCTGAACCTGAACCACCGTC 60.603 60.000 0.00 0.00 0.00 4.79
345 381 0.527817 CGTTCCACCGCAGTAGATCC 60.528 60.000 0.00 0.00 0.00 3.36
387 423 4.374702 CGCTGAAACTGCGCGCTT 62.375 61.111 33.29 18.89 43.70 4.68
388 424 2.798262 GCTGAAACTGCGCGCTTG 60.798 61.111 33.29 25.60 0.00 4.01
389 425 2.798262 CTGAAACTGCGCGCTTGC 60.798 61.111 33.29 18.40 0.00 4.01
390 426 3.525844 CTGAAACTGCGCGCTTGCA 62.526 57.895 33.29 22.11 43.95 4.08
410 446 4.838486 CAGAGAGGTCGCCGTCGC 62.838 72.222 0.00 0.00 35.26 5.19
462 498 4.115199 GGACCCCGCTCCTGCATT 62.115 66.667 0.00 0.00 39.64 3.56
463 499 2.825836 GACCCCGCTCCTGCATTG 60.826 66.667 0.00 0.00 39.64 2.82
464 500 3.628646 GACCCCGCTCCTGCATTGT 62.629 63.158 0.00 0.00 39.64 2.71
465 501 2.361610 CCCCGCTCCTGCATTGTT 60.362 61.111 0.00 0.00 39.64 2.83
476 512 1.080569 GCATTGTTTCACGCCTGGG 60.081 57.895 0.00 0.00 0.00 4.45
531 567 1.070038 GCCATTGCCATTGTTTCACG 58.930 50.000 0.00 0.00 0.00 4.35
565 613 1.656095 GTCACGAGACAACTATGCTGC 59.344 52.381 8.20 0.00 44.34 5.25
566 614 1.272212 TCACGAGACAACTATGCTGCA 59.728 47.619 4.13 4.13 0.00 4.41
570 618 3.056821 ACGAGACAACTATGCTGCAGTAA 60.057 43.478 16.64 4.48 0.00 2.24
571 619 4.115516 CGAGACAACTATGCTGCAGTAAT 58.884 43.478 16.64 12.06 0.00 1.89
572 620 5.163550 ACGAGACAACTATGCTGCAGTAATA 60.164 40.000 16.64 12.55 0.00 0.98
573 621 5.748630 CGAGACAACTATGCTGCAGTAATAA 59.251 40.000 16.64 0.06 0.00 1.40
574 622 6.255670 CGAGACAACTATGCTGCAGTAATAAA 59.744 38.462 16.64 0.00 0.00 1.40
575 623 7.308782 AGACAACTATGCTGCAGTAATAAAC 57.691 36.000 16.64 0.00 0.00 2.01
576 624 6.316390 AGACAACTATGCTGCAGTAATAAACC 59.684 38.462 16.64 0.00 0.00 3.27
577 625 5.064707 ACAACTATGCTGCAGTAATAAACCG 59.935 40.000 16.64 5.08 0.00 4.44
578 626 5.018539 ACTATGCTGCAGTAATAAACCGA 57.981 39.130 16.64 0.00 0.00 4.69
579 627 4.809426 ACTATGCTGCAGTAATAAACCGAC 59.191 41.667 16.64 0.00 0.00 4.79
580 628 1.996898 TGCTGCAGTAATAAACCGACG 59.003 47.619 16.64 0.00 0.00 5.12
581 629 1.997606 GCTGCAGTAATAAACCGACGT 59.002 47.619 16.64 0.00 0.00 4.34
582 630 2.222729 GCTGCAGTAATAAACCGACGTG 60.223 50.000 16.64 0.00 0.00 4.49
643 691 2.153401 TGGGTGGAGTTGGTGAGGG 61.153 63.158 0.00 0.00 0.00 4.30
679 729 2.031870 GGGGCAGAAGAAACAACAAGT 58.968 47.619 0.00 0.00 0.00 3.16
680 730 2.223805 GGGGCAGAAGAAACAACAAGTG 60.224 50.000 0.00 0.00 0.00 3.16
754 818 3.777925 CCGCGCACGTTCTTGGAG 61.778 66.667 8.75 0.00 37.70 3.86
755 819 4.430423 CGCGCACGTTCTTGGAGC 62.430 66.667 8.75 0.00 33.53 4.70
756 820 3.044305 GCGCACGTTCTTGGAGCT 61.044 61.111 0.30 0.00 0.00 4.09
758 822 2.720758 CGCACGTTCTTGGAGCTCG 61.721 63.158 7.83 0.00 0.00 5.03
759 823 3.016474 GCACGTTCTTGGAGCTCGC 62.016 63.158 7.83 1.18 0.00 5.03
830 894 4.162690 GTCCCAATCCGCTCGGCT 62.163 66.667 2.96 0.00 34.68 5.52
833 897 2.125147 CCAATCCGCTCGGCTTCA 60.125 61.111 2.96 0.00 34.68 3.02
928 992 3.007920 AGGGGGAGAGCACAGCAG 61.008 66.667 0.00 0.00 0.00 4.24
977 1041 1.153349 GACGGCAGGTGGGATTCTC 60.153 63.158 0.00 0.00 0.00 2.87
1005 1070 4.803088 TCTTGTTTTTGAGACAAAATGCGG 59.197 37.500 9.82 3.62 36.64 5.69
1030 1095 1.817099 GGTGATTGCGAGCTGGAGG 60.817 63.158 0.00 0.00 0.00 4.30
1051 1119 4.581093 GGGGCGTAATGGGGGAGC 62.581 72.222 0.00 0.00 0.00 4.70
1058 1126 0.694444 GTAATGGGGGAGCAGGAGGA 60.694 60.000 0.00 0.00 0.00 3.71
1128 1202 4.796231 CGTCGGTGGGGAAGAGCG 62.796 72.222 0.00 0.00 35.67 5.03
1158 1232 2.716864 GGCTACTCGACGAGCTCC 59.283 66.667 24.38 17.76 38.79 4.70
1159 1233 2.113433 GGCTACTCGACGAGCTCCA 61.113 63.158 24.38 6.81 38.79 3.86
1160 1234 1.062845 GCTACTCGACGAGCTCCAC 59.937 63.158 24.38 6.50 35.73 4.02
1161 1235 1.348938 CTACTCGACGAGCTCCACG 59.651 63.158 24.38 17.35 32.04 4.94
1162 1236 2.037913 CTACTCGACGAGCTCCACGG 62.038 65.000 24.38 15.77 32.04 4.94
1163 1237 4.180946 CTCGACGAGCTCCACGGG 62.181 72.222 21.20 16.76 34.93 5.28
1233 1308 3.151022 CTCGCCCCTCTCCTCCAC 61.151 72.222 0.00 0.00 0.00 4.02
1234 1309 4.779733 TCGCCCCTCTCCTCCACC 62.780 72.222 0.00 0.00 0.00 4.61
1238 1313 2.689034 CCCTCTCCTCCACCACCC 60.689 72.222 0.00 0.00 0.00 4.61
1239 1314 2.122729 CCTCTCCTCCACCACCCA 59.877 66.667 0.00 0.00 0.00 4.51
1240 1315 1.307343 CCTCTCCTCCACCACCCAT 60.307 63.158 0.00 0.00 0.00 4.00
1241 1316 0.916358 CCTCTCCTCCACCACCCATT 60.916 60.000 0.00 0.00 0.00 3.16
1242 1317 0.254178 CTCTCCTCCACCACCCATTG 59.746 60.000 0.00 0.00 0.00 2.82
1245 1320 1.679977 CCTCCACCACCCATTGCTG 60.680 63.158 0.00 0.00 0.00 4.41
1247 1322 3.751246 CCACCACCCATTGCTGCG 61.751 66.667 0.00 0.00 0.00 5.18
1250 1325 2.268076 ACCACCCATTGCTGCGTTC 61.268 57.895 0.00 0.00 0.00 3.95
1251 1326 2.568090 CACCCATTGCTGCGTTCC 59.432 61.111 0.00 0.00 0.00 3.62
1252 1327 1.973281 CACCCATTGCTGCGTTCCT 60.973 57.895 0.00 0.00 0.00 3.36
1253 1328 1.228552 ACCCATTGCTGCGTTCCTT 60.229 52.632 0.00 0.00 0.00 3.36
1255 1330 1.213537 CCATTGCTGCGTTCCTTGG 59.786 57.895 0.00 0.00 0.00 3.61
1257 1332 2.639327 ATTGCTGCGTTCCTTGGCC 61.639 57.895 0.00 0.00 0.00 5.36
1258 1333 3.790416 TTGCTGCGTTCCTTGGCCT 62.790 57.895 3.32 0.00 0.00 5.19
1259 1334 3.435186 GCTGCGTTCCTTGGCCTC 61.435 66.667 3.32 0.00 0.00 4.70
1275 1364 2.415512 GGCCTCGATTAATATTCGCACC 59.584 50.000 0.00 0.00 36.56 5.01
1280 1369 6.030849 CCTCGATTAATATTCGCACCTAGAG 58.969 44.000 0.00 0.00 36.56 2.43
1286 1375 5.699097 AATATTCGCACCTAGAGTCTCTC 57.301 43.478 5.39 0.00 0.00 3.20
1287 1376 2.491675 TTCGCACCTAGAGTCTCTCA 57.508 50.000 5.39 0.00 32.06 3.27
1288 1377 2.031258 TCGCACCTAGAGTCTCTCAG 57.969 55.000 5.39 1.48 32.06 3.35
1290 1379 1.468985 GCACCTAGAGTCTCTCAGCA 58.531 55.000 5.39 0.00 32.06 4.41
1291 1380 2.031120 GCACCTAGAGTCTCTCAGCAT 58.969 52.381 5.39 0.00 32.06 3.79
1292 1381 2.430332 GCACCTAGAGTCTCTCAGCATT 59.570 50.000 5.39 0.00 32.06 3.56
1293 1382 3.737663 GCACCTAGAGTCTCTCAGCATTG 60.738 52.174 5.39 0.00 32.06 2.82
1294 1383 2.430332 ACCTAGAGTCTCTCAGCATTGC 59.570 50.000 5.39 0.00 32.06 3.56
1295 1384 2.543445 CCTAGAGTCTCTCAGCATTGCG 60.543 54.545 5.39 0.00 32.06 4.85
1296 1385 1.180907 AGAGTCTCTCAGCATTGCGA 58.819 50.000 2.38 3.22 32.06 5.10
1297 1386 1.134753 AGAGTCTCTCAGCATTGCGAG 59.865 52.381 18.33 18.33 37.47 5.03
1298 1387 0.459934 AGTCTCTCAGCATTGCGAGC 60.460 55.000 19.13 10.11 36.36 5.03
1299 1388 0.459934 GTCTCTCAGCATTGCGAGCT 60.460 55.000 19.13 0.00 44.62 4.09
1304 1393 3.437795 AGCATTGCGAGCTGTGGC 61.438 61.111 2.38 0.00 41.61 5.01
1305 1394 3.740397 GCATTGCGAGCTGTGGCA 61.740 61.111 0.00 0.00 41.70 4.92
1317 1406 4.517815 GTGGCAATGGCATGGGCG 62.518 66.667 21.92 3.31 43.71 6.13
1372 1461 1.956170 CTGTCGCAGGTGACCACAC 60.956 63.158 3.63 0.00 45.27 3.82
1383 1472 0.108396 TGACCACACACCACATGAGG 59.892 55.000 7.74 7.74 0.00 3.86
1390 1479 0.606401 ACACCACATGAGGCTTTCCG 60.606 55.000 9.34 0.00 37.47 4.30
1406 1495 1.272807 TCCGGAAAGTGGAGGGTAAG 58.727 55.000 0.00 0.00 0.00 2.34
1505 1597 2.483106 CACCATCATCGCCATCTTGATC 59.517 50.000 0.00 0.00 0.00 2.92
1582 1674 0.983378 CCCTGGGATTCTCTCCGGTT 60.983 60.000 7.01 0.00 46.01 4.44
1713 1805 2.514824 GGCCGCCACTTCATCCTC 60.515 66.667 3.91 0.00 0.00 3.71
1714 1806 2.514824 GCCGCCACTTCATCCTCC 60.515 66.667 0.00 0.00 0.00 4.30
1715 1807 2.989639 CCGCCACTTCATCCTCCA 59.010 61.111 0.00 0.00 0.00 3.86
1716 1808 1.153289 CCGCCACTTCATCCTCCAG 60.153 63.158 0.00 0.00 0.00 3.86
1717 1809 1.599047 CGCCACTTCATCCTCCAGT 59.401 57.895 0.00 0.00 0.00 4.00
1718 1810 0.742281 CGCCACTTCATCCTCCAGTG 60.742 60.000 0.00 0.00 38.14 3.66
1798 1898 1.831736 GAGCTCCACTTTACAGCCCTA 59.168 52.381 0.87 0.00 33.28 3.53
1804 1904 5.396436 GCTCCACTTTACAGCCCTATTAAGA 60.396 44.000 0.00 0.00 0.00 2.10
1828 1928 4.847444 GCGCTCCCTGAAGCCTCC 62.847 72.222 0.00 0.00 39.17 4.30
1891 1994 2.125350 GCGAAGGGAGAGTGGCAG 60.125 66.667 0.00 0.00 0.00 4.85
1906 2009 2.747855 CAGGAACCGGCCAAGAGC 60.748 66.667 0.00 0.00 42.60 4.09
1953 2056 3.545624 CGAGGTACGTACGAGATTTCCAG 60.546 52.174 24.41 8.63 37.22 3.86
1956 2059 2.935481 ACGTACGAGATTTCCAGGTC 57.065 50.000 24.41 0.00 0.00 3.85
1960 2063 0.976641 ACGAGATTTCCAGGTCTGCA 59.023 50.000 0.00 0.00 0.00 4.41
1963 2066 1.734465 GAGATTTCCAGGTCTGCAACG 59.266 52.381 0.00 0.00 0.00 4.10
1964 2067 1.072331 AGATTTCCAGGTCTGCAACGT 59.928 47.619 0.00 0.00 0.00 3.99
1965 2068 2.301870 AGATTTCCAGGTCTGCAACGTA 59.698 45.455 0.00 0.00 0.00 3.57
2159 2262 0.536460 TTTCTCCGGGCTTTGTGGTC 60.536 55.000 0.00 0.00 0.00 4.02
2165 2268 3.056328 GGCTTTGTGGTCGGAGGC 61.056 66.667 0.00 0.00 0.00 4.70
2371 2474 2.159282 GCATGGCATTTCCTCTCAACAG 60.159 50.000 0.00 0.00 35.26 3.16
2382 2485 2.494073 CCTCTCAACAGTAGGAGGACAC 59.506 54.545 9.56 0.00 45.79 3.67
2429 2532 2.305927 GAGGTGGATCTTCAGTCCCAAA 59.694 50.000 0.00 0.00 34.76 3.28
2436 2539 4.142600 GGATCTTCAGTCCCAAATCAAACG 60.143 45.833 0.00 0.00 0.00 3.60
2555 2658 8.584157 GGACAGTATTCATCTGTATCTTCATCT 58.416 37.037 0.00 0.00 44.68 2.90
2558 2661 9.409312 CAGTATTCATCTGTATCTTCATCTGTC 57.591 37.037 0.00 0.00 0.00 3.51
2636 2739 4.678309 GCTGGAGTACTGATACCTGAACAC 60.678 50.000 0.00 0.00 30.88 3.32
2669 2772 4.142752 GCGAAAAGTAATGTTGGGAGGTAC 60.143 45.833 0.00 0.00 0.00 3.34
2672 2775 4.986054 AAGTAATGTTGGGAGGTACACA 57.014 40.909 0.00 0.00 0.00 3.72
2689 2792 0.546122 ACAAGTGGAACAGCTGGTGA 59.454 50.000 19.93 0.00 41.80 4.02
2690 2793 1.143684 ACAAGTGGAACAGCTGGTGAT 59.856 47.619 19.93 0.61 41.80 3.06
2693 2796 1.002888 AGTGGAACAGCTGGTGATGAG 59.997 52.381 19.93 0.00 41.80 2.90
2730 2833 1.142097 GGCGGGTCTTCTCTAGCAC 59.858 63.158 0.00 0.00 0.00 4.40
2749 2852 2.828520 CACATATCGGGTCTCCTGCTAT 59.171 50.000 0.00 0.00 0.00 2.97
2750 2853 2.828520 ACATATCGGGTCTCCTGCTATG 59.171 50.000 13.54 13.54 41.85 2.23
2761 2864 3.906218 TCTCCTGCTATGCAATCTACCAT 59.094 43.478 0.00 0.00 38.41 3.55
2787 2890 1.065102 GCCGACGACTAGATACTGCAA 59.935 52.381 0.00 0.00 0.00 4.08
2801 2904 2.786777 ACTGCAATTGAGTCATCTGCA 58.213 42.857 21.80 21.80 40.54 4.41
2915 3018 9.530633 GTCTACAAAGTATAAACATGTAGAGGG 57.469 37.037 17.30 0.00 46.57 4.30
2916 3019 8.202137 TCTACAAAGTATAAACATGTAGAGGGC 58.798 37.037 0.00 0.00 44.15 5.19
2995 3098 2.026542 TGAAGCTCCTCATGAGTTGCAT 60.027 45.455 27.55 20.67 43.48 3.96
3004 3107 7.320443 TCCTCATGAGTTGCATTATAAACAC 57.680 36.000 21.11 0.00 34.15 3.32
3033 3136 5.652994 TTGGCATTTGGTATCTTGGTAAC 57.347 39.130 0.00 0.00 0.00 2.50
3034 3137 4.929479 TGGCATTTGGTATCTTGGTAACT 58.071 39.130 0.00 0.00 37.61 2.24
3035 3138 5.329399 TGGCATTTGGTATCTTGGTAACTT 58.671 37.500 0.00 0.00 37.61 2.66
3036 3139 5.184864 TGGCATTTGGTATCTTGGTAACTTG 59.815 40.000 0.00 0.00 37.61 3.16
3037 3140 5.394115 GGCATTTGGTATCTTGGTAACTTGG 60.394 44.000 0.00 0.00 37.61 3.61
3038 3141 5.185056 GCATTTGGTATCTTGGTAACTTGGT 59.815 40.000 0.00 0.00 37.61 3.67
3039 3142 6.376018 GCATTTGGTATCTTGGTAACTTGGTA 59.624 38.462 0.00 0.00 37.61 3.25
3040 3143 7.094118 GCATTTGGTATCTTGGTAACTTGGTAA 60.094 37.037 0.00 0.00 37.61 2.85
3041 3144 7.748691 TTTGGTATCTTGGTAACTTGGTAAC 57.251 36.000 0.00 0.00 37.61 2.50
3061 3164 8.892723 TGGTAACTGATTTTATCATAGCACTTG 58.107 33.333 0.00 0.00 38.85 3.16
3062 3165 7.857885 GGTAACTGATTTTATCATAGCACTTGC 59.142 37.037 0.00 0.00 38.85 4.01
3073 3176 5.128205 TCATAGCACTTGCAAGCTGAATAT 58.872 37.500 26.27 18.44 45.16 1.28
3092 3195 9.775854 CTGAATATCACCAGAAGTTGATCTTAT 57.224 33.333 0.00 0.00 36.40 1.73
3094 3197 7.976135 ATATCACCAGAAGTTGATCTTATGC 57.024 36.000 0.00 0.00 42.12 3.14
3106 3209 8.494016 AGTTGATCTTATGCTTTTACTGTACC 57.506 34.615 0.00 0.00 0.00 3.34
3113 3216 9.817809 TCTTATGCTTTTACTGTACCTAATGAG 57.182 33.333 0.00 0.00 0.00 2.90
3136 3239 9.155975 TGAGAATTAAGTAAATCTTCAGCTGAC 57.844 33.333 18.03 3.32 37.56 3.51
3141 3244 3.681897 AGTAAATCTTCAGCTGACGCTTG 59.318 43.478 18.03 4.79 46.47 4.01
3162 3265 6.146021 GCTTGTTTGTTTGGTTTCATATCAGG 59.854 38.462 0.00 0.00 0.00 3.86
3201 3304 0.749049 GAAGATTCAGCCCCCATTGC 59.251 55.000 0.00 0.00 0.00 3.56
3213 3316 1.432807 CCCCATTGCCACCCCTATAAT 59.567 52.381 0.00 0.00 0.00 1.28
3232 3335 3.644966 ATTTCAAGGAAGGATACCGCA 57.355 42.857 0.00 0.00 37.17 5.69
3295 3398 1.000274 GCAAGGCCTTCATTTGTTCGT 60.000 47.619 17.29 0.00 0.00 3.85
3376 3479 1.164662 ATGTGCAGATGGATGAGCGC 61.165 55.000 0.00 0.00 37.95 5.92
3417 3520 4.976116 GTCCAAGAAACATGTAACACAAGC 59.024 41.667 0.00 0.00 0.00 4.01
3494 3597 7.037297 ACTCTAAATCTTCTTCCTGGGAATCAA 60.037 37.037 2.28 0.00 33.28 2.57
3496 3599 4.934797 ATCTTCTTCCTGGGAATCAACA 57.065 40.909 2.28 0.00 33.28 3.33
3502 3605 3.874383 TCCTGGGAATCAACAGAAACA 57.126 42.857 5.88 0.00 36.86 2.83
3527 3630 4.374689 TGCACATTAAAGTAAGGGACCA 57.625 40.909 0.00 0.00 0.00 4.02
3588 3691 6.775629 ACCTCTGCTATTTTAAACCACTTTCA 59.224 34.615 0.00 0.00 0.00 2.69
3590 3693 8.956426 CCTCTGCTATTTTAAACCACTTTCATA 58.044 33.333 0.00 0.00 0.00 2.15
3603 3706 9.787435 AAACCACTTTCATACAGTAATACTTGA 57.213 29.630 0.00 0.00 0.00 3.02
3652 3756 8.988064 AATATATAACGTGACCTGCTTATCTG 57.012 34.615 0.00 0.00 0.00 2.90
3658 3762 3.181475 CGTGACCTGCTTATCTGGTATGT 60.181 47.826 0.00 0.00 45.63 2.29
3854 3959 4.098044 GCTAGTGGTATGTGCTTCAGACTA 59.902 45.833 7.05 0.00 38.23 2.59
3855 3960 5.221342 GCTAGTGGTATGTGCTTCAGACTAT 60.221 44.000 7.05 0.00 38.23 2.12
3856 3961 5.683876 AGTGGTATGTGCTTCAGACTATT 57.316 39.130 7.05 0.00 38.23 1.73
3857 3962 6.054860 AGTGGTATGTGCTTCAGACTATTT 57.945 37.500 7.05 0.00 38.23 1.40
3858 3963 6.109359 AGTGGTATGTGCTTCAGACTATTTC 58.891 40.000 7.05 0.00 38.23 2.17
3859 3964 5.874810 GTGGTATGTGCTTCAGACTATTTCA 59.125 40.000 7.05 0.00 38.23 2.69
3860 3965 6.540189 GTGGTATGTGCTTCAGACTATTTCAT 59.460 38.462 7.05 0.00 38.23 2.57
3861 3966 7.710907 GTGGTATGTGCTTCAGACTATTTCATA 59.289 37.037 7.05 0.00 38.23 2.15
3900 4005 6.801718 TTTATGTAAGCAGTAAGAGCCCTA 57.198 37.500 0.00 0.00 0.00 3.53
3901 4006 4.674281 ATGTAAGCAGTAAGAGCCCTAC 57.326 45.455 0.00 0.00 0.00 3.18
3902 4007 3.709587 TGTAAGCAGTAAGAGCCCTACT 58.290 45.455 0.00 0.00 0.00 2.57
3903 4008 3.447586 TGTAAGCAGTAAGAGCCCTACTG 59.552 47.826 11.33 11.33 42.84 2.74
3906 4011 0.466124 CAGTAAGAGCCCTACTGCCC 59.534 60.000 4.95 0.00 35.43 5.36
3907 4012 0.340208 AGTAAGAGCCCTACTGCCCT 59.660 55.000 0.00 0.00 0.00 5.19
3908 4013 1.574339 AGTAAGAGCCCTACTGCCCTA 59.426 52.381 0.00 0.00 0.00 3.53
3924 4029 9.262358 CTACTGCCCTACTGAAATATTTTACTC 57.738 37.037 1.43 0.00 0.00 2.59
3995 4101 6.783708 ACTAAGCAAGTCTAGCTACAGAAT 57.216 37.500 0.00 0.00 42.53 2.40
4041 4147 0.620556 TTGGCATCCTCTTCCTCCAC 59.379 55.000 0.00 0.00 0.00 4.02
4043 4149 1.144936 GCATCCTCTTCCTCCACCG 59.855 63.158 0.00 0.00 0.00 4.94
4072 4178 5.916318 AGCATGTGAGAACATTTTCCAAAA 58.084 33.333 0.00 0.00 31.28 2.44
4185 4296 8.180267 CAGACAGTCTTTTTCCAGCTATATTTG 58.820 37.037 0.00 0.00 0.00 2.32
4221 4332 6.072286 CCATATCAAAACATACATCTCCAGCC 60.072 42.308 0.00 0.00 0.00 4.85
4297 4411 6.800543 CAGTATGAACTGTAGCATGTCTACT 58.199 40.000 20.56 7.60 46.76 2.57
4319 4433 5.523916 ACTTGTAACTGTTGTCTCATGTCAC 59.476 40.000 2.69 0.00 0.00 3.67
4362 4476 5.972107 ATCTTTATGTGCTCATATTGGGC 57.028 39.130 9.17 0.00 46.11 5.36
4387 4501 7.186128 CGTGATGCTTGCATTATTTACTGTAA 58.814 34.615 9.59 0.00 0.00 2.41
4405 4519 7.346751 ACTGTAAGATGGTTCATTGTTTTGT 57.653 32.000 0.00 0.00 37.43 2.83
4407 4521 8.257306 ACTGTAAGATGGTTCATTGTTTTGTTT 58.743 29.630 0.00 0.00 37.43 2.83
4441 4555 5.163581 GCCGTCTAGTTGACCTTCTATTGTA 60.164 44.000 0.00 0.00 42.49 2.41
4492 4606 5.348997 ACTCGAGAAGAAACGATCATTTTCC 59.651 40.000 21.68 1.08 37.86 3.13
4573 4687 0.318445 CAGCAACAGCAAGCCAAGAC 60.318 55.000 0.00 0.00 0.00 3.01
4579 4693 0.040958 CAGCAAGCCAAGACGAACAC 60.041 55.000 0.00 0.00 0.00 3.32
4609 4723 3.552890 GGAAGGCCAAAAAGACATCACAC 60.553 47.826 5.01 0.00 0.00 3.82
4654 4768 2.042464 TCTCTGAGTGGCTGTTTCACT 58.958 47.619 4.32 0.00 46.82 3.41
4769 4885 9.693739 TCTAGTGATTTAGATGCCCATTTTTAA 57.306 29.630 0.00 0.00 0.00 1.52
4806 4922 5.654317 TCTATACTACGCTCTTTCTGTCG 57.346 43.478 0.00 0.00 0.00 4.35
4812 4928 1.284657 CGCTCTTTCTGTCGCATCAT 58.715 50.000 0.00 0.00 0.00 2.45
4857 4987 6.418057 AATTGCCAGTATTGTCCTTGAAAA 57.582 33.333 0.00 0.00 0.00 2.29
4859 4989 7.716799 ATTGCCAGTATTGTCCTTGAAAATA 57.283 32.000 0.00 0.00 0.00 1.40
4860 4990 6.757897 TGCCAGTATTGTCCTTGAAAATAG 57.242 37.500 0.00 0.00 0.00 1.73
4861 4991 6.245408 TGCCAGTATTGTCCTTGAAAATAGT 58.755 36.000 0.00 0.00 28.55 2.12
4862 4992 6.374333 TGCCAGTATTGTCCTTGAAAATAGTC 59.626 38.462 0.00 0.00 26.64 2.59
4863 4993 6.374333 GCCAGTATTGTCCTTGAAAATAGTCA 59.626 38.462 0.00 0.00 26.64 3.41
4865 4995 8.400947 CCAGTATTGTCCTTGAAAATAGTCATG 58.599 37.037 0.00 0.00 26.64 3.07
4866 4996 8.950210 CAGTATTGTCCTTGAAAATAGTCATGT 58.050 33.333 0.00 0.00 26.64 3.21
4889 5331 7.140705 TGTTTAATTATATGCTGCAGTGATGC 58.859 34.615 16.64 1.04 0.00 3.91
4912 5354 6.375174 TGCTTGCAGTTCATAATTATGTCACT 59.625 34.615 21.89 20.37 35.26 3.41
4913 5355 6.909357 GCTTGCAGTTCATAATTATGTCACTC 59.091 38.462 21.89 17.14 35.26 3.51
4930 5372 3.612423 TCACTCAATTTAGCGTGTCGATG 59.388 43.478 0.00 0.00 0.00 3.84
4949 5391 4.260497 CGATGGCTCTTATGTTCACACATG 60.260 45.833 0.00 0.00 43.92 3.21
4952 5394 5.255687 TGGCTCTTATGTTCACACATGAAT 58.744 37.500 0.00 0.00 46.43 2.57
5008 5453 4.150897 TCCTGTAACATGTTCCATAGGC 57.849 45.455 15.85 0.00 0.00 3.93
5011 5456 4.336433 CCTGTAACATGTTCCATAGGCTTG 59.664 45.833 15.85 0.00 0.00 4.01
5013 5458 4.941263 TGTAACATGTTCCATAGGCTTGTC 59.059 41.667 15.85 0.00 0.00 3.18
5014 5459 3.719268 ACATGTTCCATAGGCTTGTCA 57.281 42.857 0.00 0.00 0.00 3.58
5015 5460 3.347216 ACATGTTCCATAGGCTTGTCAC 58.653 45.455 0.00 0.00 0.00 3.67
5018 5463 3.411446 TGTTCCATAGGCTTGTCACTTG 58.589 45.455 0.00 0.00 0.00 3.16
5044 5759 6.998074 TGACTGTGTTGATCCTTTAAGAACAT 59.002 34.615 0.00 0.00 0.00 2.71
5080 5795 0.106268 TTTGAGGCAGGTTGAGGCAA 60.106 50.000 0.00 0.00 0.00 4.52
5085 5800 0.681175 GGCAGGTTGAGGCAACATTT 59.319 50.000 11.83 0.00 45.11 2.32
5102 5817 5.046910 ACATTTGTAGCATTGGAACTTCG 57.953 39.130 0.00 0.00 0.00 3.79
5114 5829 3.206964 TGGAACTTCGTGCAACATGTTA 58.793 40.909 11.53 0.00 35.74 2.41
5120 5835 4.994852 ACTTCGTGCAACATGTTACATACT 59.005 37.500 14.44 0.00 35.74 2.12
5121 5836 5.468746 ACTTCGTGCAACATGTTACATACTT 59.531 36.000 14.44 0.00 35.74 2.24
5122 5837 6.647481 ACTTCGTGCAACATGTTACATACTTA 59.353 34.615 14.44 0.00 35.74 2.24
5123 5838 6.397831 TCGTGCAACATGTTACATACTTAC 57.602 37.500 14.44 0.42 35.74 2.34
5124 5839 5.927115 TCGTGCAACATGTTACATACTTACA 59.073 36.000 14.44 0.00 35.74 2.41
5125 5840 6.592220 TCGTGCAACATGTTACATACTTACAT 59.408 34.615 14.44 0.00 35.74 2.29
5126 5841 7.760340 TCGTGCAACATGTTACATACTTACATA 59.240 33.333 14.44 0.00 35.74 2.29
5127 5842 8.055986 CGTGCAACATGTTACATACTTACATAG 58.944 37.037 14.44 0.00 35.74 2.23
5128 5843 8.335356 GTGCAACATGTTACATACTTACATAGG 58.665 37.037 14.44 0.00 36.32 2.57
5129 5844 7.011950 TGCAACATGTTACATACTTACATAGGC 59.988 37.037 11.53 5.18 31.64 3.93
5130 5845 7.226720 GCAACATGTTACATACTTACATAGGCT 59.773 37.037 11.53 0.00 31.64 4.58
5136 5851 8.206189 TGTTACATACTTACATAGGCTTAACCC 58.794 37.037 0.00 0.00 40.58 4.11
5140 5855 5.169992 ACTTACATAGGCTTAACCCGTTT 57.830 39.130 0.00 0.00 40.58 3.60
5141 5856 5.181009 ACTTACATAGGCTTAACCCGTTTC 58.819 41.667 0.00 0.00 40.58 2.78
5168 5883 5.372343 ACATGTTCCATAGGCTAATCACA 57.628 39.130 0.00 0.00 0.00 3.58
5177 5892 6.782494 TCCATAGGCTAATCACATCTAGTTGA 59.218 38.462 7.81 1.30 0.00 3.18
5180 5895 4.965532 AGGCTAATCACATCTAGTTGAGGT 59.034 41.667 7.81 0.00 40.68 3.85
5187 5902 5.664457 TCACATCTAGTTGAGGTAGCATTG 58.336 41.667 7.81 0.00 37.63 2.82
5197 5912 5.080969 TGAGGTAGCATTGTAACCTGTAC 57.919 43.478 14.44 4.22 43.69 2.90
5202 5917 4.524316 AGCATTGTAACCTGTACGTGTA 57.476 40.909 0.00 0.00 0.00 2.90
5204 5920 4.021719 AGCATTGTAACCTGTACGTGTACT 60.022 41.667 11.14 0.00 37.00 2.73
5207 5923 5.512753 TTGTAACCTGTACGTGTACTGAA 57.487 39.130 15.88 2.58 37.23 3.02
5221 5937 5.458015 GTGTACTGAACTTGTAAATTGCCC 58.542 41.667 0.00 0.00 0.00 5.36
5224 5940 5.606348 ACTGAACTTGTAAATTGCCCAAA 57.394 34.783 0.00 0.00 0.00 3.28
5228 5944 5.994668 TGAACTTGTAAATTGCCCAAAATCC 59.005 36.000 0.00 0.00 0.00 3.01
5229 5945 4.905429 ACTTGTAAATTGCCCAAAATCCC 58.095 39.130 0.00 0.00 0.00 3.85
5230 5946 4.597075 ACTTGTAAATTGCCCAAAATCCCT 59.403 37.500 0.00 0.00 0.00 4.20
5232 5948 6.271159 ACTTGTAAATTGCCCAAAATCCCTTA 59.729 34.615 0.00 0.00 0.00 2.69
5239 5955 2.492088 GCCCAAAATCCCTTACACTGTC 59.508 50.000 0.00 0.00 0.00 3.51
5243 5959 5.424757 CCAAAATCCCTTACACTGTCGATA 58.575 41.667 0.00 0.00 0.00 2.92
5252 5968 6.201044 CCCTTACACTGTCGATAAATAAGCAG 59.799 42.308 0.00 0.00 0.00 4.24
5253 5969 6.757010 CCTTACACTGTCGATAAATAAGCAGT 59.243 38.462 0.00 0.00 37.63 4.40
5259 5975 8.942338 ACTGTCGATAAATAAGCAGTGATTAA 57.058 30.769 4.72 0.00 36.07 1.40
5288 6004 6.928348 TCACAATTCAGACCTAAGAACCTA 57.072 37.500 0.00 0.00 0.00 3.08
5291 6007 6.369065 CACAATTCAGACCTAAGAACCTACAC 59.631 42.308 0.00 0.00 0.00 2.90
5307 6023 7.730332 AGAACCTACACTATCATCCATACATGA 59.270 37.037 0.00 0.00 37.20 3.07
5308 6024 8.441311 AACCTACACTATCATCCATACATGAT 57.559 34.615 0.00 1.76 44.28 2.45
5310 6027 8.972127 ACCTACACTATCATCCATACATGATAC 58.028 37.037 0.00 0.00 40.99 2.24
5314 6031 9.039165 ACACTATCATCCATACATGATACATGA 57.961 33.333 16.86 0.74 40.99 3.07
5321 6038 8.501580 CATCCATACATGATACATGAACTGTTC 58.498 37.037 16.86 13.49 39.39 3.18
5329 6046 7.108841 TGATACATGAACTGTTCCCTACTAC 57.891 40.000 17.26 5.22 39.39 2.73
5330 6047 6.666113 TGATACATGAACTGTTCCCTACTACA 59.334 38.462 17.26 7.43 39.39 2.74
5331 6048 7.344612 TGATACATGAACTGTTCCCTACTACAT 59.655 37.037 17.26 0.16 39.39 2.29
5333 6050 5.104900 ACATGAACTGTTCCCTACTACATCC 60.105 44.000 17.26 0.00 32.90 3.51
5337 6054 4.282496 ACTGTTCCCTACTACATCCTCTG 58.718 47.826 0.00 0.00 0.00 3.35
5338 6055 4.264442 ACTGTTCCCTACTACATCCTCTGT 60.264 45.833 0.00 0.00 42.13 3.41
5341 6058 3.912248 TCCCTACTACATCCTCTGTTCC 58.088 50.000 0.00 0.00 39.39 3.62
5342 6059 3.532232 TCCCTACTACATCCTCTGTTCCT 59.468 47.826 0.00 0.00 39.39 3.36
5343 6060 4.730392 TCCCTACTACATCCTCTGTTCCTA 59.270 45.833 0.00 0.00 39.39 2.94
5345 6062 5.897824 CCCTACTACATCCTCTGTTCCTAAA 59.102 44.000 0.00 0.00 39.39 1.85
5346 6063 6.555360 CCCTACTACATCCTCTGTTCCTAAAT 59.445 42.308 0.00 0.00 39.39 1.40
5347 6064 7.728981 CCCTACTACATCCTCTGTTCCTAAATA 59.271 40.741 0.00 0.00 39.39 1.40
5348 6065 9.315363 CCTACTACATCCTCTGTTCCTAAATAT 57.685 37.037 0.00 0.00 39.39 1.28
5361 6078 9.736023 CTGTTCCTAAATATAAGATGTTTTGGC 57.264 33.333 4.92 0.00 36.65 4.52
5363 6080 9.736023 GTTCCTAAATATAAGATGTTTTGGCAG 57.264 33.333 4.92 0.00 36.65 4.85
5364 6081 9.474313 TTCCTAAATATAAGATGTTTTGGCAGT 57.526 29.630 4.92 0.00 36.65 4.40
5365 6082 9.474313 TCCTAAATATAAGATGTTTTGGCAGTT 57.526 29.630 4.92 0.00 36.65 3.16
5372 6403 8.986477 ATAAGATGTTTTGGCAGTTCAAATAC 57.014 30.769 0.00 0.00 36.63 1.89
5386 6417 5.301551 AGTTCAAATACATCAAGCACCACAA 59.698 36.000 0.00 0.00 0.00 3.33
5388 6419 5.527951 TCAAATACATCAAGCACCACAAAC 58.472 37.500 0.00 0.00 0.00 2.93
5389 6420 5.068329 TCAAATACATCAAGCACCACAAACA 59.932 36.000 0.00 0.00 0.00 2.83
5390 6421 4.771590 ATACATCAAGCACCACAAACAG 57.228 40.909 0.00 0.00 0.00 3.16
5411 6442 3.377485 AGCATGCTTTAGCTCTTGACATG 59.623 43.478 16.30 10.61 42.66 3.21
5421 6452 3.072184 AGCTCTTGACATGAGGACTTGTT 59.928 43.478 17.42 0.00 35.14 2.83
5422 6453 3.188048 GCTCTTGACATGAGGACTTGTTG 59.812 47.826 17.42 0.00 35.14 3.33
5466 6503 1.818642 CCTTCAGCAGGGAAGTTCAG 58.181 55.000 5.01 0.00 42.14 3.02
5467 6504 1.349026 CCTTCAGCAGGGAAGTTCAGA 59.651 52.381 5.01 0.00 42.14 3.27
5468 6505 2.614987 CCTTCAGCAGGGAAGTTCAGAG 60.615 54.545 5.01 0.00 42.14 3.35
5469 6506 2.015456 TCAGCAGGGAAGTTCAGAGA 57.985 50.000 5.01 0.00 0.00 3.10
5470 6507 1.620819 TCAGCAGGGAAGTTCAGAGAC 59.379 52.381 5.01 0.00 0.00 3.36
5471 6508 1.622811 CAGCAGGGAAGTTCAGAGACT 59.377 52.381 5.01 0.00 0.00 3.24
5472 6509 1.899142 AGCAGGGAAGTTCAGAGACTC 59.101 52.381 5.01 0.00 0.00 3.36
5473 6510 1.620819 GCAGGGAAGTTCAGAGACTCA 59.379 52.381 5.02 0.00 0.00 3.41
5474 6511 2.611722 GCAGGGAAGTTCAGAGACTCAC 60.612 54.545 5.02 0.00 0.00 3.51
5475 6512 2.896685 CAGGGAAGTTCAGAGACTCACT 59.103 50.000 5.02 0.00 0.00 3.41
5476 6513 3.056891 CAGGGAAGTTCAGAGACTCACTC 60.057 52.174 5.02 0.00 45.22 3.51
5495 6544 3.260380 ACTCTGTCAGTGAAGAATCCAGG 59.740 47.826 8.87 0.00 32.26 4.45
5506 6555 3.010200 AGAATCCAGGCAATCCTCAAC 57.990 47.619 0.00 0.00 41.93 3.18
5507 6556 2.027385 GAATCCAGGCAATCCTCAACC 58.973 52.381 0.00 0.00 41.93 3.77
5508 6557 0.107017 ATCCAGGCAATCCTCAACCG 60.107 55.000 0.00 0.00 41.93 4.44
5509 6558 1.198094 TCCAGGCAATCCTCAACCGA 61.198 55.000 0.00 0.00 41.93 4.69
5543 6604 2.569059 TCAGAAGAATATGCTGCTGCC 58.431 47.619 13.60 0.00 40.71 4.85
5583 6644 3.545481 GTGCGCTGTCCGTCATCG 61.545 66.667 9.73 0.00 39.71 3.84
5594 6661 0.314302 CCGTCATCGTATGGACCTCC 59.686 60.000 0.00 0.00 35.01 4.30
5616 6683 0.038744 ACAATCTGCCAAGGGGACAG 59.961 55.000 0.00 0.00 38.73 3.51
5627 6694 0.332972 AGGGGACAGGAGAAAATGGC 59.667 55.000 0.00 0.00 0.00 4.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 3.569701 ACATGAAATCCGTGCAGAGTTTT 59.430 39.130 0.00 0.00 35.17 2.43
26 27 3.149196 ACATGAAATCCGTGCAGAGTTT 58.851 40.909 0.00 0.00 35.17 2.66
27 28 2.783135 ACATGAAATCCGTGCAGAGTT 58.217 42.857 0.00 0.00 35.17 3.01
28 29 2.479566 ACATGAAATCCGTGCAGAGT 57.520 45.000 0.00 0.00 35.17 3.24
29 30 3.837213 AAACATGAAATCCGTGCAGAG 57.163 42.857 0.00 0.00 35.17 3.35
30 31 4.323417 ACTAAACATGAAATCCGTGCAGA 58.677 39.130 0.00 0.00 35.17 4.26
31 32 4.437390 GGACTAAACATGAAATCCGTGCAG 60.437 45.833 0.00 0.00 35.17 4.41
59 67 6.984474 TCGTATTTAGCGAATCTTTTCTCCAT 59.016 34.615 0.00 0.00 35.28 3.41
60 68 6.334989 TCGTATTTAGCGAATCTTTTCTCCA 58.665 36.000 0.00 0.00 35.28 3.86
67 75 7.696453 CCAAACAAATCGTATTTAGCGAATCTT 59.304 33.333 0.00 0.00 41.84 2.40
69 77 6.075572 GCCAAACAAATCGTATTTAGCGAATC 60.076 38.462 0.00 0.00 41.84 2.52
94 104 3.466791 CTATGCTGCCAGGGTCCGG 62.467 68.421 0.00 0.00 0.00 5.14
96 106 2.203266 GCTATGCTGCCAGGGTCC 60.203 66.667 0.00 0.00 0.00 4.46
98 108 1.152819 CATGCTATGCTGCCAGGGT 60.153 57.895 0.00 0.00 0.00 4.34
99 109 1.152819 ACATGCTATGCTGCCAGGG 60.153 57.895 0.00 0.00 0.00 4.45
102 112 1.091197 CGTCACATGCTATGCTGCCA 61.091 55.000 0.00 0.00 0.00 4.92
103 113 1.645455 CGTCACATGCTATGCTGCC 59.355 57.895 0.00 0.00 0.00 4.85
104 114 1.645455 CCGTCACATGCTATGCTGC 59.355 57.895 0.00 0.00 0.00 5.25
123 137 1.103398 ACTGTGCACCAAAGCTCACC 61.103 55.000 15.69 0.00 34.66 4.02
125 139 1.543208 CCTACTGTGCACCAAAGCTCA 60.543 52.381 15.69 0.00 36.66 4.26
173 187 0.178903 ACAGAGCTTGGGGTGTAGGA 60.179 55.000 0.00 0.00 0.00 2.94
174 188 0.036010 CACAGAGCTTGGGGTGTAGG 60.036 60.000 0.00 0.00 0.00 3.18
175 189 0.674895 GCACAGAGCTTGGGGTGTAG 60.675 60.000 0.00 0.00 41.15 2.74
253 277 1.738099 GGAGCACGGTAGCAGTGTG 60.738 63.158 14.94 6.46 41.36 3.82
297 333 1.077265 AGGTTCAGGTTGCATGGGG 59.923 57.895 0.00 0.00 0.00 4.96
315 351 1.227321 GTGGAACGACGGTGGTTCA 60.227 57.895 28.89 16.79 44.29 3.18
316 352 1.957695 GGTGGAACGACGGTGGTTC 60.958 63.158 22.84 22.84 42.32 3.62
317 353 2.109593 GGTGGAACGACGGTGGTT 59.890 61.111 8.31 8.31 38.12 3.67
320 356 4.953868 TGCGGTGGAACGACGGTG 62.954 66.667 0.00 0.00 38.12 4.94
321 357 4.657824 CTGCGGTGGAACGACGGT 62.658 66.667 0.00 0.00 38.12 4.83
322 358 3.271706 TACTGCGGTGGAACGACGG 62.272 63.158 8.92 0.00 38.12 4.79
323 359 1.800315 CTACTGCGGTGGAACGACG 60.800 63.158 8.92 0.00 38.12 5.12
324 360 0.172803 ATCTACTGCGGTGGAACGAC 59.827 55.000 16.33 0.00 38.12 4.34
325 361 0.454600 GATCTACTGCGGTGGAACGA 59.545 55.000 16.33 1.23 38.12 3.85
326 362 0.527817 GGATCTACTGCGGTGGAACG 60.528 60.000 16.33 0.00 38.12 3.95
345 381 1.027357 GGCTAACCATGGAGCATGTG 58.973 55.000 21.47 2.19 39.94 3.21
386 422 1.669115 GCGACCTCTCTGCTTGCAA 60.669 57.895 0.00 0.00 0.00 4.08
387 423 2.047844 GCGACCTCTCTGCTTGCA 60.048 61.111 0.00 0.00 0.00 4.08
388 424 2.817396 GGCGACCTCTCTGCTTGC 60.817 66.667 0.00 0.00 0.00 4.01
389 425 2.507992 CGGCGACCTCTCTGCTTG 60.508 66.667 0.00 0.00 0.00 4.01
390 426 2.992114 ACGGCGACCTCTCTGCTT 60.992 61.111 16.62 0.00 0.00 3.91
454 490 0.537143 AGGCGTGAAACAATGCAGGA 60.537 50.000 0.00 0.00 35.74 3.86
457 493 1.659233 CCAGGCGTGAAACAATGCA 59.341 52.632 8.24 0.00 35.74 3.96
460 496 3.365535 GCCCAGGCGTGAAACAAT 58.634 55.556 8.24 0.00 35.74 2.71
476 512 0.390472 CCTGGTCGAGGAGTGAAAGC 60.390 60.000 0.00 0.00 46.33 3.51
504 540 1.153529 ATGGCAATGGCATGCAACG 60.154 52.632 21.71 4.32 46.89 4.10
531 567 4.651008 TGACGACGGTCGGTTGCC 62.651 66.667 31.19 16.02 46.49 4.52
534 570 3.245948 CTCGTGACGACGGTCGGTT 62.246 63.158 31.19 14.08 46.49 4.44
556 604 4.809426 GTCGGTTTATTACTGCAGCATAGT 59.191 41.667 15.27 0.00 32.85 2.12
558 606 3.799963 CGTCGGTTTATTACTGCAGCATA 59.200 43.478 15.27 7.90 32.85 3.14
565 613 3.059834 CGGTTCACGTCGGTTTATTACTG 59.940 47.826 0.00 0.00 37.93 2.74
566 614 3.057596 TCGGTTCACGTCGGTTTATTACT 60.058 43.478 0.00 0.00 44.69 2.24
570 618 1.270550 ACTCGGTTCACGTCGGTTTAT 59.729 47.619 0.00 0.00 44.69 1.40
571 619 0.667993 ACTCGGTTCACGTCGGTTTA 59.332 50.000 0.00 0.00 44.69 2.01
572 620 0.667993 TACTCGGTTCACGTCGGTTT 59.332 50.000 0.00 0.00 44.69 3.27
573 621 0.040067 GTACTCGGTTCACGTCGGTT 60.040 55.000 0.00 0.00 44.69 4.44
574 622 1.576421 GTACTCGGTTCACGTCGGT 59.424 57.895 0.00 0.00 44.69 4.69
575 623 1.510623 CGTACTCGGTTCACGTCGG 60.511 63.158 0.00 0.00 44.69 4.79
576 624 4.032080 CGTACTCGGTTCACGTCG 57.968 61.111 0.00 0.00 44.69 5.12
679 729 2.048597 GTCCATGTCGGTGTCGCA 60.049 61.111 0.00 0.00 36.13 5.10
680 730 3.179265 CGTCCATGTCGGTGTCGC 61.179 66.667 0.00 0.00 36.13 5.19
830 894 1.174078 TAGACGTGTCAGGCGGTGAA 61.174 55.000 0.00 0.00 36.74 3.18
833 897 1.466856 TAATAGACGTGTCAGGCGGT 58.533 50.000 0.00 0.00 0.00 5.68
928 992 1.214062 CCTGCCTCGTCAGTGAGTC 59.786 63.158 0.00 0.00 34.04 3.36
960 1024 2.990479 GAGAATCCCACCTGCCGT 59.010 61.111 0.00 0.00 0.00 5.68
961 1025 2.202932 CGAGAATCCCACCTGCCG 60.203 66.667 0.00 0.00 0.00 5.69
962 1026 2.514824 GCGAGAATCCCACCTGCC 60.515 66.667 0.00 0.00 0.00 4.85
963 1027 0.678048 AAAGCGAGAATCCCACCTGC 60.678 55.000 0.00 0.00 0.00 4.85
964 1028 1.065854 AGAAAGCGAGAATCCCACCTG 60.066 52.381 0.00 0.00 0.00 4.00
965 1029 1.280457 AGAAAGCGAGAATCCCACCT 58.720 50.000 0.00 0.00 0.00 4.00
966 1030 1.740025 CAAGAAAGCGAGAATCCCACC 59.260 52.381 0.00 0.00 0.00 4.61
977 1041 6.388259 TTTTGTCTCAAAAACAAGAAAGCG 57.612 33.333 5.37 0.00 37.86 4.68
1030 1095 4.557385 CCCCATTACGCCCCGGAC 62.557 72.222 0.73 0.00 0.00 4.79
1136 1210 2.433145 TCGTCGAGTAGCCGTCGT 60.433 61.111 0.00 0.00 40.67 4.34
1224 1299 1.852157 GCAATGGGTGGTGGAGGAGA 61.852 60.000 0.00 0.00 0.00 3.71
1233 1308 2.568090 GAACGCAGCAATGGGTGG 59.432 61.111 0.58 0.00 42.72 4.61
1234 1309 1.526575 AAGGAACGCAGCAATGGGTG 61.527 55.000 0.00 0.00 45.24 4.61
1235 1310 1.228552 AAGGAACGCAGCAATGGGT 60.229 52.632 0.00 0.00 36.50 4.51
1238 1313 1.444895 GCCAAGGAACGCAGCAATG 60.445 57.895 0.00 0.00 0.00 2.82
1239 1314 2.639327 GGCCAAGGAACGCAGCAAT 61.639 57.895 0.00 0.00 0.00 3.56
1240 1315 3.294493 GGCCAAGGAACGCAGCAA 61.294 61.111 0.00 0.00 0.00 3.91
1241 1316 4.269523 AGGCCAAGGAACGCAGCA 62.270 61.111 5.01 0.00 0.00 4.41
1242 1317 3.435186 GAGGCCAAGGAACGCAGC 61.435 66.667 5.01 0.00 0.00 5.25
1245 1320 0.461339 TAATCGAGGCCAAGGAACGC 60.461 55.000 5.01 0.00 0.00 4.84
1247 1322 5.107065 CGAATATTAATCGAGGCCAAGGAAC 60.107 44.000 5.01 0.00 42.76 3.62
1250 1325 3.125316 GCGAATATTAATCGAGGCCAAGG 59.875 47.826 5.01 0.00 42.76 3.61
1251 1326 3.745975 TGCGAATATTAATCGAGGCCAAG 59.254 43.478 5.01 0.00 42.76 3.61
1252 1327 3.496884 GTGCGAATATTAATCGAGGCCAA 59.503 43.478 5.01 0.00 42.76 4.52
1253 1328 3.064207 GTGCGAATATTAATCGAGGCCA 58.936 45.455 5.01 0.00 42.76 5.36
1255 1330 3.326747 AGGTGCGAATATTAATCGAGGC 58.673 45.455 5.35 0.00 42.76 4.70
1257 1332 6.613233 ACTCTAGGTGCGAATATTAATCGAG 58.387 40.000 5.35 0.00 42.76 4.04
1258 1333 6.430308 AGACTCTAGGTGCGAATATTAATCGA 59.570 38.462 5.35 0.00 42.76 3.59
1259 1334 6.613233 AGACTCTAGGTGCGAATATTAATCG 58.387 40.000 0.00 0.00 42.99 3.34
1275 1364 2.357323 TCGCAATGCTGAGAGACTCTAG 59.643 50.000 4.57 4.96 0.00 2.43
1287 1376 3.437795 GCCACAGCTCGCAATGCT 61.438 61.111 2.94 0.00 42.06 3.79
1288 1377 3.271706 TTGCCACAGCTCGCAATGC 62.272 57.895 8.02 0.00 39.96 3.56
1292 1381 3.057548 CCATTGCCACAGCTCGCA 61.058 61.111 0.00 0.00 40.80 5.10
1293 1382 4.487412 GCCATTGCCACAGCTCGC 62.487 66.667 0.00 0.00 40.80 5.03
1294 1383 2.412323 ATGCCATTGCCACAGCTCG 61.412 57.895 0.00 0.00 40.80 5.03
1295 1384 1.141019 CATGCCATTGCCACAGCTC 59.859 57.895 0.00 0.00 40.80 4.09
1296 1385 2.355986 CCATGCCATTGCCACAGCT 61.356 57.895 0.00 0.00 40.80 4.24
1297 1386 2.185867 CCATGCCATTGCCACAGC 59.814 61.111 0.00 0.00 40.48 4.40
1298 1387 2.897207 CCCATGCCATTGCCACAG 59.103 61.111 0.00 0.00 36.33 3.66
1299 1388 3.392243 GCCCATGCCATTGCCACA 61.392 61.111 0.00 0.00 36.33 4.17
1302 1391 4.517815 CACGCCCATGCCATTGCC 62.518 66.667 0.00 0.00 36.33 4.52
1303 1392 4.517815 CCACGCCCATGCCATTGC 62.518 66.667 0.00 0.00 38.26 3.56
1304 1393 4.517815 GCCACGCCCATGCCATTG 62.518 66.667 0.00 0.00 0.00 2.82
1317 1406 1.226686 CTAGATCTGCATGGCGCCAC 61.227 60.000 35.50 21.61 41.33 5.01
1329 1418 1.063341 TGGTGCTCTCTGGCTAGATCT 60.063 52.381 0.00 0.00 31.21 2.75
1372 1461 1.308069 CCGGAAAGCCTCATGTGGTG 61.308 60.000 15.01 0.00 0.00 4.17
1373 1462 1.002134 CCGGAAAGCCTCATGTGGT 60.002 57.895 15.01 0.00 0.00 4.16
1390 1479 2.783609 GGTCTTACCCTCCACTTTCC 57.216 55.000 0.00 0.00 30.04 3.13
1406 1495 3.817647 GCTAATCATGTCATTCCTGGGTC 59.182 47.826 0.00 0.00 0.00 4.46
1413 1502 5.973651 TTCACTCGCTAATCATGTCATTC 57.026 39.130 0.00 0.00 0.00 2.67
1472 1564 3.406764 GATGATGGTGCCTATCCTCAAC 58.593 50.000 0.00 0.00 0.00 3.18
1505 1597 3.207669 GAGGGCGATGCTGCAAGG 61.208 66.667 6.36 2.32 36.28 3.61
1582 1674 5.789643 AAGTTAATCTTGCAAAGCTGGAA 57.210 34.783 0.00 0.00 45.70 3.53
1713 1805 2.670934 GCTCACCACTGGCACTGG 60.671 66.667 11.13 11.13 34.62 4.00
1714 1806 2.111669 TGCTCACCACTGGCACTG 59.888 61.111 0.00 0.00 0.00 3.66
1798 1898 2.237392 AGGGAGCGCAAACTCTCTTAAT 59.763 45.455 11.47 0.00 45.53 1.40
1804 1904 0.321122 CTTCAGGGAGCGCAAACTCT 60.321 55.000 11.47 2.49 36.87 3.24
1870 1973 4.148825 CACTCTCCCTTCGCCCCG 62.149 72.222 0.00 0.00 0.00 5.73
1875 1978 1.544825 TTCCTGCCACTCTCCCTTCG 61.545 60.000 0.00 0.00 0.00 3.79
1953 2056 2.751806 ACCTAGTACTACGTTGCAGACC 59.248 50.000 0.00 0.00 0.00 3.85
1956 2059 2.490903 ACCACCTAGTACTACGTTGCAG 59.509 50.000 0.00 0.00 0.00 4.41
1960 2063 3.754965 TCACACCACCTAGTACTACGTT 58.245 45.455 0.00 0.00 0.00 3.99
1963 2066 3.694926 ACCTCACACCACCTAGTACTAC 58.305 50.000 0.00 0.00 0.00 2.73
1964 2067 4.393239 AACCTCACACCACCTAGTACTA 57.607 45.455 1.89 1.89 0.00 1.82
1965 2068 2.994957 ACCTCACACCACCTAGTACT 57.005 50.000 0.00 0.00 0.00 2.73
2176 2279 1.284982 CGACACAAGTCCCTTGCTCG 61.285 60.000 3.96 6.98 44.43 5.03
2177 2280 0.249911 ACGACACAAGTCCCTTGCTC 60.250 55.000 3.96 0.00 44.43 4.26
2279 2382 2.683933 TCCGAGCTCCACCCCTTC 60.684 66.667 8.47 0.00 0.00 3.46
2371 2474 4.463043 AGGGCAGTGTCCTCCTAC 57.537 61.111 11.55 0.00 27.34 3.18
2382 2485 2.892025 CCTCCCATTTTGAGGGCAG 58.108 57.895 0.00 0.00 46.36 4.85
2429 2532 3.876198 GCATCGCCGGCGTTTGAT 61.876 61.111 44.16 29.60 40.74 2.57
2486 2589 3.704800 AGAGGACCACTTTTAGCCTTC 57.295 47.619 0.00 0.00 0.00 3.46
2492 2595 1.074889 GGCCCAAGAGGACCACTTTTA 59.925 52.381 0.81 0.00 37.96 1.52
2555 2658 3.054728 TCCCACTGTCAAACAAAGAGACA 60.055 43.478 0.00 0.00 39.74 3.41
2558 2661 3.808728 TCTCCCACTGTCAAACAAAGAG 58.191 45.455 0.00 0.00 0.00 2.85
2636 2739 2.702592 TACTTTTCGCCCCACCATAG 57.297 50.000 0.00 0.00 0.00 2.23
2669 2772 0.664761 CACCAGCTGTTCCACTTGTG 59.335 55.000 13.81 7.01 0.00 3.33
2672 2775 1.421268 TCATCACCAGCTGTTCCACTT 59.579 47.619 13.81 0.00 0.00 3.16
2689 2792 4.689612 ACTATGCCAATACCGAACTCAT 57.310 40.909 0.00 0.00 0.00 2.90
2690 2793 4.188462 CAACTATGCCAATACCGAACTCA 58.812 43.478 0.00 0.00 0.00 3.41
2693 2796 2.032924 GCCAACTATGCCAATACCGAAC 59.967 50.000 0.00 0.00 0.00 3.95
2715 2818 3.057174 CCGATATGTGCTAGAGAAGACCC 60.057 52.174 0.00 0.00 0.00 4.46
2730 2833 2.417924 GCATAGCAGGAGACCCGATATG 60.418 54.545 5.30 5.30 37.85 1.78
2749 2852 1.375853 GCGCACCATGGTAGATTGCA 61.376 55.000 19.28 0.00 32.51 4.08
2750 2853 1.356624 GCGCACCATGGTAGATTGC 59.643 57.895 19.28 15.58 0.00 3.56
2761 2864 4.111016 CTAGTCGTCGGCGCACCA 62.111 66.667 10.83 0.00 38.14 4.17
2801 2904 0.974010 CTTGGGTGCTGGGCAATGAT 60.974 55.000 0.00 0.00 41.47 2.45
2810 2913 3.057969 TGTACAGATTCTTGGGTGCTG 57.942 47.619 0.00 0.00 0.00 4.41
2846 2949 6.490040 GCAATAGGCTAAAAATGATGGGTAGA 59.510 38.462 0.00 0.00 40.25 2.59
2915 3018 3.777556 CCCCAAACAGAGGGTTGC 58.222 61.111 0.00 0.00 45.28 4.17
2920 3023 1.659794 CGCAAACCCCAAACAGAGG 59.340 57.895 0.00 0.00 0.00 3.69
2963 3066 5.947228 TGAGGAGCTTCACAATTTAACAG 57.053 39.130 0.00 0.00 0.00 3.16
2995 3098 9.482627 CCAAATGCCAAAAACTAGTGTTTATAA 57.517 29.630 10.75 0.38 44.70 0.98
3004 3107 6.813152 CCAAGATACCAAATGCCAAAAACTAG 59.187 38.462 0.00 0.00 0.00 2.57
3033 3136 9.113838 AGTGCTATGATAAAATCAGTTACCAAG 57.886 33.333 0.00 0.00 43.53 3.61
3034 3137 9.461312 AAGTGCTATGATAAAATCAGTTACCAA 57.539 29.630 0.00 0.00 43.53 3.67
3035 3138 8.892723 CAAGTGCTATGATAAAATCAGTTACCA 58.107 33.333 0.00 0.00 43.53 3.25
3036 3139 7.857885 GCAAGTGCTATGATAAAATCAGTTACC 59.142 37.037 0.00 0.00 39.39 2.85
3037 3140 8.397906 TGCAAGTGCTATGATAAAATCAGTTAC 58.602 33.333 4.69 0.00 41.58 2.50
3038 3141 8.504812 TGCAAGTGCTATGATAAAATCAGTTA 57.495 30.769 4.69 0.00 41.58 2.24
3039 3142 7.395190 TGCAAGTGCTATGATAAAATCAGTT 57.605 32.000 4.69 0.00 41.58 3.16
3040 3143 7.395190 TTGCAAGTGCTATGATAAAATCAGT 57.605 32.000 4.69 0.00 41.58 3.41
3041 3144 6.417044 GCTTGCAAGTGCTATGATAAAATCAG 59.583 38.462 26.55 0.00 41.58 2.90
3061 3164 3.944015 ACTTCTGGTGATATTCAGCTTGC 59.056 43.478 8.04 0.00 44.58 4.01
3062 3165 5.645067 TCAACTTCTGGTGATATTCAGCTTG 59.355 40.000 8.04 4.41 44.58 4.01
3073 3176 5.426689 AGCATAAGATCAACTTCTGGTGA 57.573 39.130 0.00 0.00 40.24 4.02
3113 3216 6.902417 GCGTCAGCTGAAGATTTACTTAATTC 59.098 38.462 30.34 6.78 38.54 2.17
3136 3239 5.689514 TGATATGAAACCAAACAAACAAGCG 59.310 36.000 0.00 0.00 0.00 4.68
3141 3244 4.621034 CGCCTGATATGAAACCAAACAAAC 59.379 41.667 0.00 0.00 0.00 2.93
3162 3265 0.170561 TACGAACTCAGCCTCTTCGC 59.829 55.000 0.00 0.00 40.34 4.70
3201 3304 5.103686 TCCTTCCTTGAAATTATAGGGGTGG 60.104 44.000 0.00 0.00 0.00 4.61
3213 3316 3.078837 GTTGCGGTATCCTTCCTTGAAA 58.921 45.455 0.00 0.00 0.00 2.69
3232 3335 7.784470 ACTTAGATCTGGACTAGTTTGAGTT 57.216 36.000 5.18 0.00 0.00 3.01
3277 3380 2.955660 TGAACGAACAAATGAAGGCCTT 59.044 40.909 20.65 20.65 0.00 4.35
3295 3398 3.321396 TGGCTTGTTGCATTGAGAATGAA 59.679 39.130 0.40 0.00 45.15 2.57
3494 3597 9.593134 TTACTTTAATGTGCATTTTGTTTCTGT 57.407 25.926 2.56 0.00 32.50 3.41
3496 3599 9.260002 CCTTACTTTAATGTGCATTTTGTTTCT 57.740 29.630 2.56 0.00 32.50 2.52
3502 3605 6.268847 TGGTCCCTTACTTTAATGTGCATTTT 59.731 34.615 2.56 0.00 32.50 1.82
3527 3630 3.535561 AGCAGCATTTATCGTAAGCACT 58.464 40.909 0.00 0.00 37.18 4.40
3603 3706 9.875691 ATTTTCACTTTTTCAGAAGTTAAGCTT 57.124 25.926 3.48 3.48 37.76 3.74
3637 3741 4.408182 ACATACCAGATAAGCAGGTCAC 57.592 45.455 0.00 0.00 37.58 3.67
3652 3756 8.491331 AAAATTGGATATTTGCACAACATACC 57.509 30.769 0.00 0.00 0.00 2.73
3682 3787 3.952535 ACTTTGCAGAGTTTTAGCAACG 58.047 40.909 3.61 0.00 46.69 4.10
3730 3835 6.985188 TTTAACAATGGTAGAGTGATCAGC 57.015 37.500 0.00 0.00 0.00 4.26
3813 3918 0.098376 GCTTCTGAATTGCAGCCTCG 59.902 55.000 0.00 0.00 44.52 4.63
3895 4000 0.909623 TTTCAGTAGGGCAGTAGGGC 59.090 55.000 0.00 0.00 42.44 5.19
3900 4005 7.630082 TGAGTAAAATATTTCAGTAGGGCAGT 58.370 34.615 0.10 0.00 0.00 4.40
3901 4006 8.682936 ATGAGTAAAATATTTCAGTAGGGCAG 57.317 34.615 0.10 0.00 0.00 4.85
3902 4007 7.719633 GGATGAGTAAAATATTTCAGTAGGGCA 59.280 37.037 0.10 0.00 0.00 5.36
3903 4008 7.719633 TGGATGAGTAAAATATTTCAGTAGGGC 59.280 37.037 0.10 0.00 0.00 5.19
3904 4009 9.799106 ATGGATGAGTAAAATATTTCAGTAGGG 57.201 33.333 0.10 0.00 0.00 3.53
3950 4056 4.591321 TCACTATTTGGATCCTTTGGCT 57.409 40.909 14.23 0.00 0.00 4.75
4041 4147 4.944962 TGTTCTCACATGCTTATTTCGG 57.055 40.909 0.00 0.00 0.00 4.30
4043 4149 7.814107 TGGAAAATGTTCTCACATGCTTATTTC 59.186 33.333 0.00 0.00 43.34 2.17
4185 4296 5.537188 TGTTTTGATATGGTTCCTGCAAAC 58.463 37.500 0.00 0.00 0.00 2.93
4297 4411 5.523552 CAGTGACATGAGACAACAGTTACAA 59.476 40.000 0.00 0.00 0.00 2.41
4344 4458 2.877786 CACGCCCAATATGAGCACATAA 59.122 45.455 7.96 0.00 41.46 1.90
4361 4475 4.438797 CAGTAAATAATGCAAGCATCACGC 59.561 41.667 8.14 0.00 42.91 5.34
4362 4476 5.572211 ACAGTAAATAATGCAAGCATCACG 58.428 37.500 8.14 0.00 35.31 4.35
4363 4477 8.397906 TCTTACAGTAAATAATGCAAGCATCAC 58.602 33.333 8.14 2.54 35.31 3.06
4387 4501 8.260114 AGAGAAAAACAAAACAATGAACCATCT 58.740 29.630 0.00 0.00 0.00 2.90
4405 4519 6.367969 GTCAACTAGACGGCAATAGAGAAAAA 59.632 38.462 0.00 0.00 37.53 1.94
4407 4521 5.408356 GTCAACTAGACGGCAATAGAGAAA 58.592 41.667 0.00 0.00 37.53 2.52
4492 4606 3.005791 GGGTGTTCAAAATTCTGTCCAGG 59.994 47.826 0.00 0.00 0.00 4.45
4573 4687 0.593128 CCTTCCTGCAAAGGTGTTCG 59.407 55.000 8.77 0.00 40.86 3.95
4609 4723 3.689161 TGATCTGGCCATTCTTTGTAACG 59.311 43.478 5.51 0.00 0.00 3.18
4654 4768 4.276678 GCATGATACTAGAAAGCATGGCAA 59.723 41.667 21.18 0.00 37.42 4.52
4740 4856 8.593945 AAATGGGCATCTAAATCACTAGAAAA 57.406 30.769 0.00 0.00 31.76 2.29
4741 4857 8.593945 AAAATGGGCATCTAAATCACTAGAAA 57.406 30.769 0.00 0.00 31.76 2.52
4769 4885 7.628794 GCGTAGTATAGATGCTACTGGCTTTAT 60.629 40.741 13.64 0.00 41.80 1.40
4806 4922 7.482743 CACGGTTTATATTATTCTGCATGATGC 59.517 37.037 11.12 11.12 45.29 3.91
4812 4928 9.729023 CAATTTCACGGTTTATATTATTCTGCA 57.271 29.630 0.00 0.00 0.00 4.41
4859 4989 8.347771 CACTGCAGCATATAATTAAACATGACT 58.652 33.333 15.27 0.00 0.00 3.41
4860 4990 8.344831 TCACTGCAGCATATAATTAAACATGAC 58.655 33.333 15.27 2.52 0.00 3.06
4861 4991 8.449251 TCACTGCAGCATATAATTAAACATGA 57.551 30.769 15.27 0.69 0.00 3.07
4862 4992 9.124807 CATCACTGCAGCATATAATTAAACATG 57.875 33.333 15.27 0.00 0.00 3.21
4883 5325 7.198390 ACATAATTATGAACTGCAAGCATCAC 58.802 34.615 28.13 0.00 36.16 3.06
4889 5331 7.977904 TGAGTGACATAATTATGAACTGCAAG 58.022 34.615 27.83 7.40 35.70 4.01
4912 5354 1.663643 GCCATCGACACGCTAAATTGA 59.336 47.619 0.00 0.00 0.00 2.57
4913 5355 1.665679 AGCCATCGACACGCTAAATTG 59.334 47.619 1.11 0.00 0.00 2.32
4921 5363 2.209838 ACATAAGAGCCATCGACACG 57.790 50.000 0.00 0.00 0.00 4.49
4930 5372 5.824904 ATTCATGTGTGAACATAAGAGCC 57.175 39.130 0.00 0.00 46.43 4.70
4961 5403 8.280258 AGTTCCATAATCCTGGAGATTTGATA 57.720 34.615 1.52 0.00 45.80 2.15
4967 5409 5.230759 AGGAAGTTCCATAATCCTGGAGAT 58.769 41.667 23.87 0.00 45.80 2.75
5013 5458 3.470709 AGGATCAACACAGTCACAAGTG 58.529 45.455 0.00 0.00 41.40 3.16
5014 5459 3.845781 AGGATCAACACAGTCACAAGT 57.154 42.857 0.00 0.00 0.00 3.16
5015 5460 6.483307 TCTTAAAGGATCAACACAGTCACAAG 59.517 38.462 0.00 0.00 0.00 3.16
5018 5463 6.260050 TGTTCTTAAAGGATCAACACAGTCAC 59.740 38.462 0.00 0.00 0.00 3.67
5052 5767 4.219070 TCAACCTGCCTCAAATCATTTCTG 59.781 41.667 0.00 0.00 0.00 3.02
5080 5795 4.518970 ACGAAGTTCCAATGCTACAAATGT 59.481 37.500 0.00 0.00 37.78 2.71
5085 5800 1.804151 GCACGAAGTTCCAATGCTACA 59.196 47.619 12.08 0.00 41.61 2.74
5102 5817 8.335356 CCTATGTAAGTATGTAACATGTTGCAC 58.665 37.037 28.27 17.88 37.97 4.57
5114 5829 5.364735 ACGGGTTAAGCCTATGTAAGTATGT 59.635 40.000 20.90 4.59 37.43 2.29
5120 5835 5.180271 CAGAAACGGGTTAAGCCTATGTAA 58.820 41.667 20.90 0.00 37.43 2.41
5121 5836 4.761975 CAGAAACGGGTTAAGCCTATGTA 58.238 43.478 20.90 0.00 37.43 2.29
5122 5837 3.606687 CAGAAACGGGTTAAGCCTATGT 58.393 45.455 20.90 9.28 37.43 2.29
5123 5838 2.354821 GCAGAAACGGGTTAAGCCTATG 59.645 50.000 20.90 11.19 37.43 2.23
5124 5839 2.026636 TGCAGAAACGGGTTAAGCCTAT 60.027 45.455 20.90 6.81 37.43 2.57
5125 5840 1.348366 TGCAGAAACGGGTTAAGCCTA 59.652 47.619 20.90 0.00 37.43 3.93
5126 5841 0.109723 TGCAGAAACGGGTTAAGCCT 59.890 50.000 20.90 2.75 37.43 4.58
5127 5842 0.955905 TTGCAGAAACGGGTTAAGCC 59.044 50.000 13.92 13.92 0.00 4.35
5128 5843 1.335496 TGTTGCAGAAACGGGTTAAGC 59.665 47.619 0.00 0.00 42.10 3.09
5129 5844 3.004315 ACATGTTGCAGAAACGGGTTAAG 59.996 43.478 0.00 0.00 42.10 1.85
5130 5845 2.952978 ACATGTTGCAGAAACGGGTTAA 59.047 40.909 0.00 0.00 42.10 2.01
5136 5851 2.772568 TGGAACATGTTGCAGAAACG 57.227 45.000 26.64 0.00 42.10 3.60
5168 5883 6.384305 AGGTTACAATGCTACCTCAACTAGAT 59.616 38.462 0.00 0.00 37.78 1.98
5177 5892 3.512724 ACGTACAGGTTACAATGCTACCT 59.487 43.478 1.56 1.56 42.92 3.08
5180 5895 4.524316 ACACGTACAGGTTACAATGCTA 57.476 40.909 0.00 0.00 0.00 3.49
5187 5902 5.113502 AGTTCAGTACACGTACAGGTTAC 57.886 43.478 9.85 2.55 38.48 2.50
5197 5912 5.144359 GGCAATTTACAAGTTCAGTACACG 58.856 41.667 0.00 0.00 0.00 4.49
5202 5917 5.606348 TTTGGGCAATTTACAAGTTCAGT 57.394 34.783 0.00 0.00 0.00 3.41
5204 5920 5.994668 GGATTTTGGGCAATTTACAAGTTCA 59.005 36.000 0.00 0.00 0.00 3.18
5207 5923 4.597075 AGGGATTTTGGGCAATTTACAAGT 59.403 37.500 0.00 0.00 0.00 3.16
5221 5937 6.978343 TTATCGACAGTGTAAGGGATTTTG 57.022 37.500 0.00 0.00 0.00 2.44
5224 5940 7.441458 GCTTATTTATCGACAGTGTAAGGGATT 59.559 37.037 0.00 0.00 0.00 3.01
5228 5944 6.757010 ACTGCTTATTTATCGACAGTGTAAGG 59.243 38.462 0.00 0.00 37.02 2.69
5229 5945 7.613146 CACTGCTTATTTATCGACAGTGTAAG 58.387 38.462 16.24 9.83 46.14 2.34
5230 5946 7.520119 CACTGCTTATTTATCGACAGTGTAA 57.480 36.000 16.24 0.00 46.14 2.41
5259 5975 9.606631 GTTCTTAGGTCTGAATTGTGATTAGAT 57.393 33.333 0.00 0.00 0.00 1.98
5269 5985 6.936968 AGTGTAGGTTCTTAGGTCTGAATT 57.063 37.500 0.00 0.00 0.00 2.17
5270 5986 7.839705 TGATAGTGTAGGTTCTTAGGTCTGAAT 59.160 37.037 0.00 0.00 0.00 2.57
5277 5993 6.978674 TGGATGATAGTGTAGGTTCTTAGG 57.021 41.667 0.00 0.00 0.00 2.69
5278 5994 9.078990 TGTATGGATGATAGTGTAGGTTCTTAG 57.921 37.037 0.00 0.00 0.00 2.18
5281 5997 7.730332 TCATGTATGGATGATAGTGTAGGTTCT 59.270 37.037 0.00 0.00 0.00 3.01
5288 6004 9.039165 TCATGTATCATGTATGGATGATAGTGT 57.961 33.333 9.13 0.00 43.07 3.55
5307 6023 7.202011 GGATGTAGTAGGGAACAGTTCATGTAT 60.202 40.741 15.36 0.82 43.00 2.29
5308 6024 6.097839 GGATGTAGTAGGGAACAGTTCATGTA 59.902 42.308 15.36 0.56 43.00 2.29
5310 6027 5.129485 AGGATGTAGTAGGGAACAGTTCATG 59.871 44.000 15.36 0.00 0.00 3.07
5314 6031 4.712337 CAGAGGATGTAGTAGGGAACAGTT 59.288 45.833 0.00 0.00 0.00 3.16
5321 6038 3.917300 AGGAACAGAGGATGTAGTAGGG 58.083 50.000 0.00 0.00 43.00 3.53
5337 6054 9.736023 CTGCCAAAACATCTTATATTTAGGAAC 57.264 33.333 0.00 0.00 0.00 3.62
5338 6055 9.474313 ACTGCCAAAACATCTTATATTTAGGAA 57.526 29.630 0.00 0.00 0.00 3.36
5343 6060 9.995003 TTTGAACTGCCAAAACATCTTATATTT 57.005 25.926 0.00 0.00 33.56 1.40
5347 6064 8.584157 TGTATTTGAACTGCCAAAACATCTTAT 58.416 29.630 0.00 0.00 39.20 1.73
5348 6065 7.946207 TGTATTTGAACTGCCAAAACATCTTA 58.054 30.769 0.00 0.00 39.20 2.10
5349 6066 6.815089 TGTATTTGAACTGCCAAAACATCTT 58.185 32.000 0.00 0.00 39.20 2.40
5350 6067 6.403866 TGTATTTGAACTGCCAAAACATCT 57.596 33.333 0.00 0.00 39.20 2.90
5351 6068 6.867816 TGATGTATTTGAACTGCCAAAACATC 59.132 34.615 22.63 22.63 43.39 3.06
5352 6069 6.757237 TGATGTATTTGAACTGCCAAAACAT 58.243 32.000 15.09 15.09 39.20 2.71
5355 6072 5.695816 GCTTGATGTATTTGAACTGCCAAAA 59.304 36.000 0.00 0.00 39.20 2.44
5356 6073 5.221402 TGCTTGATGTATTTGAACTGCCAAA 60.221 36.000 0.00 0.00 39.93 3.28
5357 6074 4.280425 TGCTTGATGTATTTGAACTGCCAA 59.720 37.500 0.00 0.00 0.00 4.52
5358 6075 3.825585 TGCTTGATGTATTTGAACTGCCA 59.174 39.130 0.00 0.00 0.00 4.92
5359 6076 4.168760 GTGCTTGATGTATTTGAACTGCC 58.831 43.478 0.00 0.00 0.00 4.85
5360 6077 4.168760 GGTGCTTGATGTATTTGAACTGC 58.831 43.478 0.00 0.00 0.00 4.40
5361 6078 5.156355 GTGGTGCTTGATGTATTTGAACTG 58.844 41.667 0.00 0.00 0.00 3.16
5363 6080 5.119931 TGTGGTGCTTGATGTATTTGAAC 57.880 39.130 0.00 0.00 0.00 3.18
5364 6081 5.781210 TTGTGGTGCTTGATGTATTTGAA 57.219 34.783 0.00 0.00 0.00 2.69
5365 6082 5.068329 TGTTTGTGGTGCTTGATGTATTTGA 59.932 36.000 0.00 0.00 0.00 2.69
5367 6084 5.528043 TGTTTGTGGTGCTTGATGTATTT 57.472 34.783 0.00 0.00 0.00 1.40
5368 6085 4.559300 GCTGTTTGTGGTGCTTGATGTATT 60.559 41.667 0.00 0.00 0.00 1.89
5372 6403 1.067364 TGCTGTTTGTGGTGCTTGATG 59.933 47.619 0.00 0.00 0.00 3.07
5386 6417 3.190118 GTCAAGAGCTAAAGCATGCTGTT 59.810 43.478 23.48 18.73 42.29 3.16
5388 6419 2.745821 TGTCAAGAGCTAAAGCATGCTG 59.254 45.455 23.48 10.32 45.16 4.41
5389 6420 3.063510 TGTCAAGAGCTAAAGCATGCT 57.936 42.857 16.30 16.30 45.16 3.79
5390 6421 3.376234 TCATGTCAAGAGCTAAAGCATGC 59.624 43.478 10.51 10.51 45.16 4.06
5411 6442 6.072452 CCCTGAAGATAAAACAACAAGTCCTC 60.072 42.308 0.00 0.00 0.00 3.71
5421 6452 5.104360 CCTCCAGATCCCTGAAGATAAAACA 60.104 44.000 0.00 0.00 43.02 2.83
5422 6453 5.372373 CCTCCAGATCCCTGAAGATAAAAC 58.628 45.833 0.00 0.00 43.02 2.43
5473 6510 3.260380 CCTGGATTCTTCACTGACAGAGT 59.740 47.826 10.08 0.00 34.02 3.24
5474 6511 3.859443 CCTGGATTCTTCACTGACAGAG 58.141 50.000 10.08 0.55 0.00 3.35
5475 6512 2.027745 GCCTGGATTCTTCACTGACAGA 60.028 50.000 10.08 0.00 0.00 3.41
5476 6513 2.289882 TGCCTGGATTCTTCACTGACAG 60.290 50.000 0.00 0.00 0.00 3.51
5477 6514 1.699083 TGCCTGGATTCTTCACTGACA 59.301 47.619 0.00 0.00 0.00 3.58
5478 6515 2.479566 TGCCTGGATTCTTCACTGAC 57.520 50.000 0.00 0.00 0.00 3.51
5479 6516 3.614092 GATTGCCTGGATTCTTCACTGA 58.386 45.455 0.00 0.00 0.00 3.41
5480 6517 2.686915 GGATTGCCTGGATTCTTCACTG 59.313 50.000 0.00 0.00 0.00 3.66
5481 6518 2.579860 AGGATTGCCTGGATTCTTCACT 59.420 45.455 0.00 0.00 44.90 3.41
5482 6519 3.010200 AGGATTGCCTGGATTCTTCAC 57.990 47.619 0.00 0.00 44.90 3.18
5495 6544 1.749258 GGGGTCGGTTGAGGATTGC 60.749 63.158 0.00 0.00 0.00 3.56
5508 6557 0.672401 TCTGAAAATGCGACGGGGTC 60.672 55.000 0.00 0.00 0.00 4.46
5509 6558 0.250553 TTCTGAAAATGCGACGGGGT 60.251 50.000 0.00 0.00 0.00 4.95
5574 6635 1.315690 GAGGTCCATACGATGACGGA 58.684 55.000 0.00 0.00 44.46 4.69
5576 6637 0.040336 CGGAGGTCCATACGATGACG 60.040 60.000 0.00 0.00 39.84 4.35
5581 6642 1.252215 TTGTGCGGAGGTCCATACGA 61.252 55.000 4.34 0.00 35.14 3.43
5583 6644 1.139058 AGATTGTGCGGAGGTCCATAC 59.861 52.381 0.00 0.00 35.14 2.39
5616 6683 2.885113 GGTGGCGCCATTTTCTCC 59.115 61.111 35.23 24.09 37.17 3.71
5627 6694 2.125512 CTCCTTTCCTCGGTGGCG 60.126 66.667 0.00 0.00 35.26 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.