Multiple sequence alignment - TraesCS5A01G237100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G237100 chr5A 100.000 3485 0 0 1 3485 452686075 452689559 0.000000e+00 6436.0
1 TraesCS5A01G237100 chr5A 90.789 76 7 0 2 77 34442877 34442952 6.150000e-18 102.0
2 TraesCS5A01G237100 chr5A 88.158 76 9 0 2 77 441018026 441018101 1.330000e-14 91.6
3 TraesCS5A01G237100 chr5D 89.407 3087 180 65 476 3485 353077781 353074765 0.000000e+00 3753.0
4 TraesCS5A01G237100 chr5D 79.787 188 27 2 2 178 320579649 320579462 3.650000e-25 126.0
5 TraesCS5A01G237100 chr5D 85.057 87 12 1 93 178 111371177 111371091 1.720000e-13 87.9
6 TraesCS5A01G237100 chr5B 90.228 2855 165 40 685 3483 416161122 416158326 0.000000e+00 3622.0
7 TraesCS5A01G237100 chr5B 86.916 107 9 5 770 872 416161224 416161119 7.900000e-22 115.0
8 TraesCS5A01G237100 chr6A 88.190 525 38 14 1654 2178 555421086 555420586 3.850000e-169 604.0
9 TraesCS5A01G237100 chr6A 77.717 184 28 8 2 173 176383309 176383127 2.210000e-17 100.0
10 TraesCS5A01G237100 chr6A 85.542 83 11 1 91 172 464454002 464454084 6.200000e-13 86.1
11 TraesCS5A01G237100 chr3A 88.494 478 52 1 1517 1994 12434043 12434517 3.020000e-160 575.0
12 TraesCS5A01G237100 chr3A 91.549 142 12 0 281 422 642346077 642345936 2.740000e-46 196.0
13 TraesCS5A01G237100 chr2B 87.166 187 24 0 280 466 99280593 99280779 2.720000e-51 213.0
14 TraesCS5A01G237100 chr2B 90.789 76 7 0 2 77 265076693 265076618 6.150000e-18 102.0
15 TraesCS5A01G237100 chr4B 94.624 93 5 0 1517 1609 429345446 429345354 1.010000e-30 145.0
16 TraesCS5A01G237100 chr4B 77.005 187 32 6 3 178 377980458 377980272 2.860000e-16 97.1
17 TraesCS5A01G237100 chr4B 88.158 76 9 0 2 77 337798084 337798009 1.330000e-14 91.6
18 TraesCS5A01G237100 chr1B 78.689 183 27 6 2 172 502755865 502756047 1.020000e-20 111.0
19 TraesCS5A01G237100 chr1B 78.191 188 30 2 2 178 150892875 150892688 3.680000e-20 110.0
20 TraesCS5A01G237100 chr1B 76.374 182 31 6 2 172 46242945 46243125 1.720000e-13 87.9
21 TraesCS5A01G237100 chr1B 100.000 33 0 0 1567 1599 328649739 328649771 1.040000e-05 62.1
22 TraesCS5A01G237100 chr1B 94.595 37 2 0 1839 1875 640400562 640400526 1.350000e-04 58.4
23 TraesCS5A01G237100 chr3B 77.778 189 31 2 2 179 223290005 223289817 4.760000e-19 106.0
24 TraesCS5A01G237100 chr7D 77.596 183 29 6 2 173 545061796 545061615 2.210000e-17 100.0
25 TraesCS5A01G237100 chr7A 76.442 208 36 6 2 196 275661506 275661713 2.210000e-17 100.0
26 TraesCS5A01G237100 chr1D 89.474 76 8 0 2 77 230764104 230764179 2.860000e-16 97.1
27 TraesCS5A01G237100 chr1D 94.595 37 2 0 1839 1875 464166958 464166922 1.350000e-04 58.4
28 TraesCS5A01G237100 chr2A 77.174 184 29 8 2 173 599238629 599238811 1.030000e-15 95.3
29 TraesCS5A01G237100 chr6D 88.158 76 9 0 2 77 96593720 96593795 1.330000e-14 91.6
30 TraesCS5A01G237100 chr7B 82.857 70 11 1 191 259 237998726 237998795 1.040000e-05 62.1
31 TraesCS5A01G237100 chr1A 94.595 37 2 0 1839 1875 556449689 556449653 1.350000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G237100 chr5A 452686075 452689559 3484 False 6436.0 6436 100.000 1 3485 1 chr5A.!!$F3 3484
1 TraesCS5A01G237100 chr5D 353074765 353077781 3016 True 3753.0 3753 89.407 476 3485 1 chr5D.!!$R3 3009
2 TraesCS5A01G237100 chr5B 416158326 416161224 2898 True 1868.5 3622 88.572 685 3483 2 chr5B.!!$R1 2798
3 TraesCS5A01G237100 chr6A 555420586 555421086 500 True 604.0 604 88.190 1654 2178 1 chr6A.!!$R2 524

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
794 803 0.030101 CGATCAGCGTCTCCTCTTCC 59.97 60.0 0.0 0.0 34.64 3.46 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2510 2539 0.534203 TTCTGGGGCGTTGTGTTCTC 60.534 55.0 0.0 0.0 0.0 2.87 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 2.187685 CAGCTCATAGCCACCGCA 59.812 61.111 0.00 0.00 43.77 5.69
27 28 2.176273 CAGCTCATAGCCACCGCAC 61.176 63.158 0.00 0.00 43.77 5.34
29 30 1.884926 GCTCATAGCCACCGCACTC 60.885 63.158 0.00 0.00 34.48 3.51
30 31 1.227380 CTCATAGCCACCGCACTCC 60.227 63.158 0.00 0.00 37.52 3.85
31 32 2.203070 CATAGCCACCGCACTCCC 60.203 66.667 0.00 0.00 37.52 4.30
33 34 2.735772 ATAGCCACCGCACTCCCTG 61.736 63.158 0.00 0.00 37.52 4.45
34 35 3.897681 TAGCCACCGCACTCCCTGA 62.898 63.158 0.00 0.00 37.52 3.86
36 37 4.742201 CCACCGCACTCCCTGACG 62.742 72.222 0.00 0.00 0.00 4.35
49 50 2.525629 TGACGGGGTCCTTGCTGA 60.526 61.111 0.00 0.00 0.00 4.26
50 51 2.111999 CTGACGGGGTCCTTGCTGAA 62.112 60.000 0.00 0.00 0.00 3.02
54 55 1.308069 CGGGGTCCTTGCTGAATGTG 61.308 60.000 0.00 0.00 0.00 3.21
55 56 0.251341 GGGGTCCTTGCTGAATGTGT 60.251 55.000 0.00 0.00 0.00 3.72
56 57 0.883833 GGGTCCTTGCTGAATGTGTG 59.116 55.000 0.00 0.00 0.00 3.82
58 59 0.883833 GTCCTTGCTGAATGTGTGGG 59.116 55.000 0.00 0.00 0.00 4.61
59 60 0.251297 TCCTTGCTGAATGTGTGGGG 60.251 55.000 0.00 0.00 0.00 4.96
60 61 0.540365 CCTTGCTGAATGTGTGGGGT 60.540 55.000 0.00 0.00 0.00 4.95
62 63 1.688197 CTTGCTGAATGTGTGGGGTTT 59.312 47.619 0.00 0.00 0.00 3.27
63 64 1.327303 TGCTGAATGTGTGGGGTTTC 58.673 50.000 0.00 0.00 0.00 2.78
64 65 0.240945 GCTGAATGTGTGGGGTTTCG 59.759 55.000 0.00 0.00 0.00 3.46
65 66 0.881118 CTGAATGTGTGGGGTTTCGG 59.119 55.000 0.00 0.00 0.00 4.30
67 68 0.538746 GAATGTGTGGGGTTTCGGGT 60.539 55.000 0.00 0.00 0.00 5.28
68 69 0.538746 AATGTGTGGGGTTTCGGGTC 60.539 55.000 0.00 0.00 0.00 4.46
69 70 2.281970 GTGTGGGGTTTCGGGTCC 60.282 66.667 0.00 0.00 0.00 4.46
70 71 2.448931 TGTGGGGTTTCGGGTCCT 60.449 61.111 0.00 0.00 0.00 3.85
71 72 2.350134 GTGGGGTTTCGGGTCCTC 59.650 66.667 0.00 0.00 0.00 3.71
72 73 2.122324 TGGGGTTTCGGGTCCTCA 60.122 61.111 0.00 0.00 0.00 3.86
73 74 1.770927 TGGGGTTTCGGGTCCTCAA 60.771 57.895 0.00 0.00 30.53 3.02
74 75 1.354168 TGGGGTTTCGGGTCCTCAAA 61.354 55.000 0.00 0.00 30.53 2.69
76 77 1.244816 GGGTTTCGGGTCCTCAAAAG 58.755 55.000 0.00 0.00 0.00 2.27
77 78 1.478105 GGGTTTCGGGTCCTCAAAAGT 60.478 52.381 0.00 0.00 0.00 2.66
78 79 2.304092 GGTTTCGGGTCCTCAAAAGTT 58.696 47.619 0.00 0.00 0.00 2.66
79 80 2.691526 GGTTTCGGGTCCTCAAAAGTTT 59.308 45.455 0.00 0.00 0.00 2.66
81 82 4.357142 GTTTCGGGTCCTCAAAAGTTTTC 58.643 43.478 0.00 0.00 0.00 2.29
82 83 2.578786 TCGGGTCCTCAAAAGTTTTCC 58.421 47.619 0.00 0.00 0.00 3.13
83 84 2.173996 TCGGGTCCTCAAAAGTTTTCCT 59.826 45.455 0.00 0.00 0.00 3.36
85 86 3.296854 GGGTCCTCAAAAGTTTTCCTGT 58.703 45.455 0.00 0.00 0.00 4.00
86 87 3.068165 GGGTCCTCAAAAGTTTTCCTGTG 59.932 47.826 0.00 0.00 0.00 3.66
88 89 3.951680 GTCCTCAAAAGTTTTCCTGTGGA 59.048 43.478 0.00 1.99 0.00 4.02
89 90 4.584743 GTCCTCAAAAGTTTTCCTGTGGAT 59.415 41.667 11.01 0.00 34.83 3.41
91 92 4.584325 CCTCAAAAGTTTTCCTGTGGATCA 59.416 41.667 0.00 0.00 0.00 2.92
93 94 4.036262 TCAAAAGTTTTCCTGTGGATCACG 59.964 41.667 0.00 0.00 37.14 4.35
95 96 1.072331 AGTTTTCCTGTGGATCACGCT 59.928 47.619 0.00 0.00 37.14 5.07
96 97 1.880027 GTTTTCCTGTGGATCACGCTT 59.120 47.619 0.00 0.00 37.14 4.68
97 98 1.808411 TTTCCTGTGGATCACGCTTC 58.192 50.000 0.00 0.00 37.14 3.86
99 100 0.247460 TCCTGTGGATCACGCTTCAG 59.753 55.000 0.00 0.00 37.14 3.02
110 111 2.267324 GCTTCAGGCGAGGCTTCT 59.733 61.111 0.00 0.00 40.93 2.85
111 112 1.376553 GCTTCAGGCGAGGCTTCTT 60.377 57.895 0.00 0.00 40.93 2.52
112 113 0.108138 GCTTCAGGCGAGGCTTCTTA 60.108 55.000 0.00 0.00 40.93 2.10
113 114 1.676014 GCTTCAGGCGAGGCTTCTTAA 60.676 52.381 0.00 0.00 40.93 1.85
114 115 2.699954 CTTCAGGCGAGGCTTCTTAAA 58.300 47.619 0.00 0.00 0.00 1.52
115 116 2.094762 TCAGGCGAGGCTTCTTAAAC 57.905 50.000 0.00 0.00 0.00 2.01
116 117 0.721718 CAGGCGAGGCTTCTTAAACG 59.278 55.000 0.00 0.00 0.00 3.60
117 118 0.320697 AGGCGAGGCTTCTTAAACGT 59.679 50.000 0.00 0.00 0.00 3.99
118 119 0.442699 GGCGAGGCTTCTTAAACGTG 59.557 55.000 0.00 0.00 0.00 4.49
119 120 1.425412 GCGAGGCTTCTTAAACGTGA 58.575 50.000 0.00 0.00 0.00 4.35
120 121 1.390463 GCGAGGCTTCTTAAACGTGAG 59.610 52.381 0.00 0.00 0.00 3.51
121 122 1.390463 CGAGGCTTCTTAAACGTGAGC 59.610 52.381 0.00 0.00 0.00 4.26
122 123 2.689646 GAGGCTTCTTAAACGTGAGCT 58.310 47.619 0.00 0.00 0.00 4.09
123 124 3.672511 CGAGGCTTCTTAAACGTGAGCTA 60.673 47.826 0.00 0.00 0.00 3.32
124 125 4.434520 GAGGCTTCTTAAACGTGAGCTAT 58.565 43.478 0.00 0.00 0.00 2.97
125 126 4.184629 AGGCTTCTTAAACGTGAGCTATG 58.815 43.478 0.00 0.00 0.00 2.23
126 127 3.309954 GGCTTCTTAAACGTGAGCTATGG 59.690 47.826 0.00 0.00 0.00 2.74
127 128 3.933332 GCTTCTTAAACGTGAGCTATGGT 59.067 43.478 0.00 0.00 0.00 3.55
128 129 4.201724 GCTTCTTAAACGTGAGCTATGGTG 60.202 45.833 0.00 0.00 0.00 4.17
129 130 3.259064 TCTTAAACGTGAGCTATGGTGC 58.741 45.455 0.00 0.00 0.00 5.01
130 131 2.753055 TAAACGTGAGCTATGGTGCA 57.247 45.000 0.00 0.00 34.99 4.57
131 132 1.156736 AAACGTGAGCTATGGTGCAC 58.843 50.000 8.80 8.80 34.99 4.57
132 133 0.673644 AACGTGAGCTATGGTGCACC 60.674 55.000 29.67 29.67 34.99 5.01
141 142 2.842462 TGGTGCACCACTCTCGGT 60.842 61.111 34.74 0.00 42.01 4.69
147 148 4.288234 ACCACTCTCGGTGTTGGA 57.712 55.556 0.00 0.00 43.94 3.53
148 149 2.050269 ACCACTCTCGGTGTTGGAG 58.950 57.895 0.00 0.00 43.94 3.86
149 150 1.293498 CCACTCTCGGTGTTGGAGG 59.707 63.158 0.00 0.00 43.94 4.30
150 151 1.472662 CCACTCTCGGTGTTGGAGGT 61.473 60.000 0.00 0.00 43.94 3.85
151 152 1.254026 CACTCTCGGTGTTGGAGGTA 58.746 55.000 0.00 0.00 40.79 3.08
152 153 1.067776 CACTCTCGGTGTTGGAGGTAC 60.068 57.143 0.00 0.00 40.79 3.34
153 154 1.254026 CTCTCGGTGTTGGAGGTACA 58.746 55.000 0.00 0.00 32.34 2.90
154 155 0.963962 TCTCGGTGTTGGAGGTACAC 59.036 55.000 0.00 0.00 43.96 2.90
155 156 0.388134 CTCGGTGTTGGAGGTACACG 60.388 60.000 0.00 0.00 45.27 4.49
156 157 1.373748 CGGTGTTGGAGGTACACGG 60.374 63.158 0.00 0.00 45.27 4.94
157 158 1.750297 GGTGTTGGAGGTACACGGT 59.250 57.895 0.00 0.00 45.27 4.83
158 159 0.601841 GGTGTTGGAGGTACACGGTG 60.602 60.000 6.58 6.58 45.27 4.94
159 160 0.390124 GTGTTGGAGGTACACGGTGA 59.610 55.000 16.29 0.00 36.84 4.02
160 161 1.001633 GTGTTGGAGGTACACGGTGAT 59.998 52.381 16.29 1.80 36.84 3.06
161 162 1.001520 TGTTGGAGGTACACGGTGATG 59.998 52.381 16.29 0.00 0.00 3.07
162 163 1.001633 GTTGGAGGTACACGGTGATGT 59.998 52.381 16.29 0.00 36.56 3.06
163 164 0.606096 TGGAGGTACACGGTGATGTG 59.394 55.000 16.29 0.00 45.41 3.21
170 171 2.600388 CACGGTGATGTGTTCGTGT 58.400 52.632 0.74 0.00 45.15 4.49
171 172 0.232046 CACGGTGATGTGTTCGTGTG 59.768 55.000 0.74 0.00 45.15 3.82
172 173 0.179094 ACGGTGATGTGTTCGTGTGT 60.179 50.000 0.00 0.00 34.40 3.72
173 174 0.232046 CGGTGATGTGTTCGTGTGTG 59.768 55.000 0.00 0.00 0.00 3.82
174 175 1.577468 GGTGATGTGTTCGTGTGTGA 58.423 50.000 0.00 0.00 0.00 3.58
175 176 1.526887 GGTGATGTGTTCGTGTGTGAG 59.473 52.381 0.00 0.00 0.00 3.51
176 177 1.070577 GTGATGTGTTCGTGTGTGAGC 60.071 52.381 0.00 0.00 0.00 4.26
177 178 1.217001 GATGTGTTCGTGTGTGAGCA 58.783 50.000 0.00 0.00 0.00 4.26
178 179 1.597195 GATGTGTTCGTGTGTGAGCAA 59.403 47.619 0.00 0.00 30.63 3.91
179 180 1.443802 TGTGTTCGTGTGTGAGCAAA 58.556 45.000 0.00 0.00 30.63 3.68
180 181 1.807142 TGTGTTCGTGTGTGAGCAAAA 59.193 42.857 0.00 0.00 30.63 2.44
181 182 2.421775 TGTGTTCGTGTGTGAGCAAAAT 59.578 40.909 0.00 0.00 30.63 1.82
182 183 3.035942 GTGTTCGTGTGTGAGCAAAATC 58.964 45.455 0.00 0.00 30.63 2.17
183 184 2.680339 TGTTCGTGTGTGAGCAAAATCA 59.320 40.909 0.00 0.00 0.00 2.57
184 185 3.314913 TGTTCGTGTGTGAGCAAAATCAT 59.685 39.130 0.00 0.00 0.00 2.45
185 186 4.513318 TGTTCGTGTGTGAGCAAAATCATA 59.487 37.500 0.00 0.00 0.00 2.15
186 187 5.181056 TGTTCGTGTGTGAGCAAAATCATAT 59.819 36.000 0.00 0.00 0.00 1.78
187 188 6.370166 TGTTCGTGTGTGAGCAAAATCATATA 59.630 34.615 0.00 0.00 0.00 0.86
188 189 7.065683 TGTTCGTGTGTGAGCAAAATCATATAT 59.934 33.333 0.00 0.00 0.00 0.86
189 190 8.547894 GTTCGTGTGTGAGCAAAATCATATATA 58.452 33.333 0.00 0.00 0.00 0.86
190 191 8.831715 TCGTGTGTGAGCAAAATCATATATAT 57.168 30.769 0.00 0.00 0.00 0.86
191 192 9.271828 TCGTGTGTGAGCAAAATCATATATATT 57.728 29.630 0.00 0.00 0.00 1.28
192 193 9.882996 CGTGTGTGAGCAAAATCATATATATTT 57.117 29.630 0.00 0.00 0.00 1.40
217 218 9.620259 TTTTGCCAAAATTTAGATTAAAGTGGT 57.380 25.926 0.00 0.00 33.74 4.16
219 220 9.921637 TTGCCAAAATTTAGATTAAAGTGGTAG 57.078 29.630 0.00 0.00 33.74 3.18
220 221 8.032451 TGCCAAAATTTAGATTAAAGTGGTAGC 58.968 33.333 0.00 0.00 33.74 3.58
221 222 7.491372 GCCAAAATTTAGATTAAAGTGGTAGCC 59.509 37.037 0.00 0.00 33.74 3.93
222 223 8.749354 CCAAAATTTAGATTAAAGTGGTAGCCT 58.251 33.333 0.00 0.00 0.00 4.58
227 228 8.700439 TTTAGATTAAAGTGGTAGCCTTTTGT 57.300 30.769 11.80 4.19 34.20 2.83
228 229 8.700439 TTAGATTAAAGTGGTAGCCTTTTGTT 57.300 30.769 11.80 1.51 34.20 2.83
229 230 6.981722 AGATTAAAGTGGTAGCCTTTTGTTG 58.018 36.000 11.80 0.00 34.20 3.33
230 231 6.775629 AGATTAAAGTGGTAGCCTTTTGTTGA 59.224 34.615 11.80 0.00 34.20 3.18
231 232 4.649088 AAAGTGGTAGCCTTTTGTTGAC 57.351 40.909 3.47 0.00 0.00 3.18
232 233 2.218603 AGTGGTAGCCTTTTGTTGACG 58.781 47.619 0.00 0.00 0.00 4.35
233 234 1.944709 GTGGTAGCCTTTTGTTGACGT 59.055 47.619 0.00 0.00 0.00 4.34
234 235 2.356695 GTGGTAGCCTTTTGTTGACGTT 59.643 45.455 0.00 0.00 0.00 3.99
235 236 3.018149 TGGTAGCCTTTTGTTGACGTTT 58.982 40.909 0.00 0.00 0.00 3.60
236 237 3.444388 TGGTAGCCTTTTGTTGACGTTTT 59.556 39.130 0.00 0.00 0.00 2.43
237 238 3.794564 GGTAGCCTTTTGTTGACGTTTTG 59.205 43.478 0.00 0.00 0.00 2.44
238 239 3.859411 AGCCTTTTGTTGACGTTTTGA 57.141 38.095 0.00 0.00 0.00 2.69
239 240 4.181309 AGCCTTTTGTTGACGTTTTGAA 57.819 36.364 0.00 0.00 0.00 2.69
240 241 4.561105 AGCCTTTTGTTGACGTTTTGAAA 58.439 34.783 0.00 0.00 0.00 2.69
241 242 4.625311 AGCCTTTTGTTGACGTTTTGAAAG 59.375 37.500 0.00 0.00 0.00 2.62
242 243 4.387559 GCCTTTTGTTGACGTTTTGAAAGT 59.612 37.500 0.00 0.00 0.00 2.66
243 244 5.667644 GCCTTTTGTTGACGTTTTGAAAGTG 60.668 40.000 0.00 0.00 0.00 3.16
244 245 5.164002 CCTTTTGTTGACGTTTTGAAAGTGG 60.164 40.000 0.00 0.00 0.00 4.00
245 246 4.506886 TTGTTGACGTTTTGAAAGTGGT 57.493 36.364 0.00 0.00 0.00 4.16
246 247 5.624344 TTGTTGACGTTTTGAAAGTGGTA 57.376 34.783 0.00 0.00 0.00 3.25
247 248 5.224562 TGTTGACGTTTTGAAAGTGGTAG 57.775 39.130 0.00 0.00 0.00 3.18
248 249 4.696402 TGTTGACGTTTTGAAAGTGGTAGT 59.304 37.500 0.00 0.00 0.00 2.73
249 250 5.181622 TGTTGACGTTTTGAAAGTGGTAGTT 59.818 36.000 0.00 0.00 0.00 2.24
250 251 5.473796 TGACGTTTTGAAAGTGGTAGTTC 57.526 39.130 0.00 0.00 0.00 3.01
251 252 4.936411 TGACGTTTTGAAAGTGGTAGTTCA 59.064 37.500 0.00 0.00 31.99 3.18
252 253 5.064198 TGACGTTTTGAAAGTGGTAGTTCAG 59.936 40.000 0.00 0.00 35.29 3.02
253 254 4.939439 ACGTTTTGAAAGTGGTAGTTCAGT 59.061 37.500 0.00 0.00 35.29 3.41
254 255 5.163794 ACGTTTTGAAAGTGGTAGTTCAGTG 60.164 40.000 0.00 0.00 35.29 3.66
255 256 5.578776 GTTTTGAAAGTGGTAGTTCAGTGG 58.421 41.667 0.00 0.00 35.29 4.00
256 257 3.485463 TGAAAGTGGTAGTTCAGTGGG 57.515 47.619 0.00 0.00 30.41 4.61
257 258 3.042682 TGAAAGTGGTAGTTCAGTGGGA 58.957 45.455 0.00 0.00 30.41 4.37
258 259 3.650942 TGAAAGTGGTAGTTCAGTGGGAT 59.349 43.478 0.00 0.00 30.41 3.85
259 260 4.841813 TGAAAGTGGTAGTTCAGTGGGATA 59.158 41.667 0.00 0.00 30.41 2.59
260 261 4.820894 AAGTGGTAGTTCAGTGGGATAC 57.179 45.455 0.00 0.00 0.00 2.24
261 262 3.786553 AGTGGTAGTTCAGTGGGATACA 58.213 45.455 0.00 0.00 39.74 2.29
262 263 4.164981 AGTGGTAGTTCAGTGGGATACAA 58.835 43.478 0.00 0.00 39.74 2.41
263 264 4.020485 AGTGGTAGTTCAGTGGGATACAAC 60.020 45.833 0.00 0.00 39.74 3.32
264 265 3.262405 TGGTAGTTCAGTGGGATACAACC 59.738 47.826 0.00 0.00 39.74 3.77
265 266 2.762535 AGTTCAGTGGGATACAACCG 57.237 50.000 0.00 0.00 39.74 4.44
266 267 1.975680 AGTTCAGTGGGATACAACCGT 59.024 47.619 0.00 0.00 39.74 4.83
267 268 2.073816 GTTCAGTGGGATACAACCGTG 58.926 52.381 0.00 0.00 39.74 4.94
268 269 1.634960 TCAGTGGGATACAACCGTGA 58.365 50.000 0.00 0.00 39.74 4.35
269 270 1.972075 TCAGTGGGATACAACCGTGAA 59.028 47.619 0.00 0.00 39.74 3.18
270 271 2.569853 TCAGTGGGATACAACCGTGAAT 59.430 45.455 0.00 0.00 39.74 2.57
271 272 2.677836 CAGTGGGATACAACCGTGAATG 59.322 50.000 0.00 0.00 39.74 2.67
272 273 2.304761 AGTGGGATACAACCGTGAATGT 59.695 45.455 0.00 0.00 39.74 2.71
273 274 2.418628 GTGGGATACAACCGTGAATGTG 59.581 50.000 0.00 0.00 39.74 3.21
274 275 2.303311 TGGGATACAACCGTGAATGTGA 59.697 45.455 0.00 0.00 39.74 3.58
275 276 3.054728 TGGGATACAACCGTGAATGTGAT 60.055 43.478 0.00 0.00 39.74 3.06
276 277 3.945285 GGGATACAACCGTGAATGTGATT 59.055 43.478 0.00 0.00 39.74 2.57
277 278 5.120399 GGGATACAACCGTGAATGTGATTA 58.880 41.667 0.00 0.00 39.74 1.75
278 279 5.763204 GGGATACAACCGTGAATGTGATTAT 59.237 40.000 0.00 0.00 39.74 1.28
279 280 6.262273 GGGATACAACCGTGAATGTGATTATT 59.738 38.462 0.00 0.00 39.74 1.40
280 281 7.201785 GGGATACAACCGTGAATGTGATTATTT 60.202 37.037 0.00 0.00 39.74 1.40
281 282 8.188139 GGATACAACCGTGAATGTGATTATTTT 58.812 33.333 0.00 0.00 0.00 1.82
282 283 9.567848 GATACAACCGTGAATGTGATTATTTTT 57.432 29.630 0.00 0.00 0.00 1.94
306 307 8.887036 TTTCTCAAATACGCATGAGTATATGT 57.113 30.769 20.51 8.18 42.86 2.29
307 308 9.974980 TTTCTCAAATACGCATGAGTATATGTA 57.025 29.630 20.51 7.76 42.86 2.29
309 310 9.788960 TCTCAAATACGCATGAGTATATGTATC 57.211 33.333 20.51 0.00 42.86 2.24
310 311 9.573133 CTCAAATACGCATGAGTATATGTATCA 57.427 33.333 20.51 0.00 38.57 2.15
317 318 8.876790 ACGCATGAGTATATGTATCATTCATTG 58.123 33.333 0.00 0.00 31.38 2.82
318 319 8.876790 CGCATGAGTATATGTATCATTCATTGT 58.123 33.333 0.00 0.00 31.38 2.71
329 330 8.292444 TGTATCATTCATTGTAAAAGGAAGGG 57.708 34.615 5.00 0.00 29.72 3.95
330 331 6.796785 ATCATTCATTGTAAAAGGAAGGGG 57.203 37.500 5.00 0.00 29.72 4.79
331 332 5.898120 TCATTCATTGTAAAAGGAAGGGGA 58.102 37.500 5.00 0.00 29.72 4.81
332 333 6.318913 TCATTCATTGTAAAAGGAAGGGGAA 58.681 36.000 5.00 0.00 29.72 3.97
333 334 6.437162 TCATTCATTGTAAAAGGAAGGGGAAG 59.563 38.462 5.00 0.00 29.72 3.46
334 335 5.592587 TCATTGTAAAAGGAAGGGGAAGA 57.407 39.130 0.00 0.00 0.00 2.87
335 336 5.959512 TCATTGTAAAAGGAAGGGGAAGAA 58.040 37.500 0.00 0.00 0.00 2.52
336 337 6.010219 TCATTGTAAAAGGAAGGGGAAGAAG 58.990 40.000 0.00 0.00 0.00 2.85
337 338 3.763057 TGTAAAAGGAAGGGGAAGAAGC 58.237 45.455 0.00 0.00 0.00 3.86
338 339 3.397955 TGTAAAAGGAAGGGGAAGAAGCT 59.602 43.478 0.00 0.00 0.00 3.74
339 340 2.889170 AAAGGAAGGGGAAGAAGCTC 57.111 50.000 0.00 0.00 0.00 4.09
340 341 0.995803 AAGGAAGGGGAAGAAGCTCC 59.004 55.000 0.00 0.00 34.41 4.70
346 347 2.904131 GGAAGAAGCTCCCCGAGG 59.096 66.667 0.00 0.00 0.00 4.63
347 348 1.990614 GGAAGAAGCTCCCCGAGGT 60.991 63.158 0.00 0.00 42.52 3.85
348 349 1.518302 GAAGAAGCTCCCCGAGGTC 59.482 63.158 0.00 0.00 39.62 3.85
349 350 1.229209 AAGAAGCTCCCCGAGGTCA 60.229 57.895 0.00 0.00 39.62 4.02
350 351 1.545706 AAGAAGCTCCCCGAGGTCAC 61.546 60.000 0.00 0.00 39.62 3.67
351 352 2.203788 AAGCTCCCCGAGGTCACA 60.204 61.111 0.00 0.00 39.62 3.58
352 353 1.613630 AAGCTCCCCGAGGTCACAT 60.614 57.895 0.00 0.00 39.62 3.21
353 354 1.201429 AAGCTCCCCGAGGTCACATT 61.201 55.000 0.00 0.00 39.62 2.71
354 355 1.201429 AGCTCCCCGAGGTCACATTT 61.201 55.000 0.00 0.00 35.30 2.32
355 356 0.539986 GCTCCCCGAGGTCACATTTA 59.460 55.000 0.00 0.00 0.00 1.40
356 357 1.742750 GCTCCCCGAGGTCACATTTAC 60.743 57.143 0.00 0.00 0.00 2.01
357 358 1.553248 CTCCCCGAGGTCACATTTACA 59.447 52.381 0.00 0.00 0.00 2.41
358 359 1.979308 TCCCCGAGGTCACATTTACAA 59.021 47.619 0.00 0.00 0.00 2.41
359 360 2.574369 TCCCCGAGGTCACATTTACAAT 59.426 45.455 0.00 0.00 0.00 2.71
360 361 2.682856 CCCCGAGGTCACATTTACAATG 59.317 50.000 0.00 0.00 0.00 2.82
361 362 3.343617 CCCGAGGTCACATTTACAATGT 58.656 45.455 0.00 0.00 0.00 2.71
362 363 3.756434 CCCGAGGTCACATTTACAATGTT 59.244 43.478 0.00 0.00 0.00 2.71
363 364 4.217550 CCCGAGGTCACATTTACAATGTTT 59.782 41.667 0.00 0.00 0.00 2.83
364 365 5.413213 CCCGAGGTCACATTTACAATGTTTA 59.587 40.000 0.00 0.00 0.00 2.01
365 366 6.094881 CCCGAGGTCACATTTACAATGTTTAT 59.905 38.462 0.00 0.00 0.00 1.40
366 367 7.362574 CCCGAGGTCACATTTACAATGTTTATT 60.363 37.037 0.00 0.00 0.00 1.40
367 368 8.026607 CCGAGGTCACATTTACAATGTTTATTT 58.973 33.333 0.00 0.00 0.00 1.40
368 369 9.061610 CGAGGTCACATTTACAATGTTTATTTC 57.938 33.333 0.00 0.00 0.00 2.17
369 370 9.353999 GAGGTCACATTTACAATGTTTATTTCC 57.646 33.333 0.00 0.00 0.00 3.13
370 371 8.865090 AGGTCACATTTACAATGTTTATTTCCA 58.135 29.630 0.00 0.00 0.00 3.53
371 372 9.651913 GGTCACATTTACAATGTTTATTTCCAT 57.348 29.630 0.00 0.00 0.00 3.41
388 389 6.924913 TTTCCATGTGAAATTTATCCCACA 57.075 33.333 11.50 11.50 42.71 4.17
389 390 5.913137 TCCATGTGAAATTTATCCCACAC 57.087 39.130 11.37 5.74 41.56 3.82
390 391 4.709397 TCCATGTGAAATTTATCCCACACC 59.291 41.667 11.37 0.00 41.56 4.16
391 392 4.465660 CCATGTGAAATTTATCCCACACCA 59.534 41.667 11.37 0.00 41.56 4.17
392 393 5.410067 CATGTGAAATTTATCCCACACCAC 58.590 41.667 11.37 3.90 41.56 4.16
393 394 3.829601 TGTGAAATTTATCCCACACCACC 59.170 43.478 6.39 0.00 34.96 4.61
394 395 3.194755 GTGAAATTTATCCCACACCACCC 59.805 47.826 0.00 0.00 0.00 4.61
395 396 3.181417 TGAAATTTATCCCACACCACCCA 60.181 43.478 0.00 0.00 0.00 4.51
396 397 3.551635 AATTTATCCCACACCACCCAA 57.448 42.857 0.00 0.00 0.00 4.12
397 398 2.595750 TTTATCCCACACCACCCAAG 57.404 50.000 0.00 0.00 0.00 3.61
398 399 0.039035 TTATCCCACACCACCCAAGC 59.961 55.000 0.00 0.00 0.00 4.01
399 400 0.844661 TATCCCACACCACCCAAGCT 60.845 55.000 0.00 0.00 0.00 3.74
400 401 1.729267 ATCCCACACCACCCAAGCTT 61.729 55.000 0.00 0.00 0.00 3.74
401 402 1.903404 CCCACACCACCCAAGCTTC 60.903 63.158 0.00 0.00 0.00 3.86
402 403 1.151450 CCACACCACCCAAGCTTCT 59.849 57.895 0.00 0.00 0.00 2.85
403 404 0.400213 CCACACCACCCAAGCTTCTA 59.600 55.000 0.00 0.00 0.00 2.10
404 405 1.523758 CACACCACCCAAGCTTCTAC 58.476 55.000 0.00 0.00 0.00 2.59
405 406 1.072331 CACACCACCCAAGCTTCTACT 59.928 52.381 0.00 0.00 0.00 2.57
406 407 2.301870 CACACCACCCAAGCTTCTACTA 59.698 50.000 0.00 0.00 0.00 1.82
407 408 2.302157 ACACCACCCAAGCTTCTACTAC 59.698 50.000 0.00 0.00 0.00 2.73
408 409 1.549170 ACCACCCAAGCTTCTACTACG 59.451 52.381 0.00 0.00 0.00 3.51
409 410 1.134788 CCACCCAAGCTTCTACTACGG 60.135 57.143 0.00 0.00 0.00 4.02
410 411 1.822990 CACCCAAGCTTCTACTACGGA 59.177 52.381 0.00 0.00 0.00 4.69
411 412 1.823610 ACCCAAGCTTCTACTACGGAC 59.176 52.381 0.00 0.00 0.00 4.79
412 413 2.100989 CCCAAGCTTCTACTACGGACT 58.899 52.381 0.00 0.00 0.00 3.85
413 414 3.285484 CCCAAGCTTCTACTACGGACTA 58.715 50.000 0.00 0.00 0.00 2.59
414 415 3.066481 CCCAAGCTTCTACTACGGACTAC 59.934 52.174 0.00 0.00 0.00 2.73
415 416 3.946558 CCAAGCTTCTACTACGGACTACT 59.053 47.826 0.00 0.00 0.00 2.57
416 417 4.201930 CCAAGCTTCTACTACGGACTACTG 60.202 50.000 0.00 0.00 0.00 2.74
417 418 2.944349 AGCTTCTACTACGGACTACTGC 59.056 50.000 0.00 0.00 0.00 4.40
418 419 2.033174 GCTTCTACTACGGACTACTGCC 59.967 54.545 0.00 0.00 0.00 4.85
419 420 3.543665 CTTCTACTACGGACTACTGCCT 58.456 50.000 0.00 0.00 0.00 4.75
420 421 3.191078 TCTACTACGGACTACTGCCTC 57.809 52.381 0.00 0.00 0.00 4.70
421 422 2.502947 TCTACTACGGACTACTGCCTCA 59.497 50.000 0.00 0.00 0.00 3.86
422 423 2.438800 ACTACGGACTACTGCCTCAT 57.561 50.000 0.00 0.00 0.00 2.90
423 424 2.736347 ACTACGGACTACTGCCTCATT 58.264 47.619 0.00 0.00 0.00 2.57
424 425 2.427453 ACTACGGACTACTGCCTCATTG 59.573 50.000 0.00 0.00 0.00 2.82
425 426 0.108138 ACGGACTACTGCCTCATTGC 60.108 55.000 0.00 0.00 0.00 3.56
426 427 0.811616 CGGACTACTGCCTCATTGCC 60.812 60.000 0.00 0.00 0.00 4.52
427 428 0.464554 GGACTACTGCCTCATTGCCC 60.465 60.000 0.00 0.00 0.00 5.36
428 429 0.253044 GACTACTGCCTCATTGCCCA 59.747 55.000 0.00 0.00 0.00 5.36
429 430 0.035056 ACTACTGCCTCATTGCCCAC 60.035 55.000 0.00 0.00 0.00 4.61
430 431 0.254178 CTACTGCCTCATTGCCCACT 59.746 55.000 0.00 0.00 0.00 4.00
431 432 0.253044 TACTGCCTCATTGCCCACTC 59.747 55.000 0.00 0.00 0.00 3.51
432 433 1.302285 CTGCCTCATTGCCCACTCT 59.698 57.895 0.00 0.00 0.00 3.24
433 434 0.543277 CTGCCTCATTGCCCACTCTA 59.457 55.000 0.00 0.00 0.00 2.43
434 435 0.253044 TGCCTCATTGCCCACTCTAC 59.747 55.000 0.00 0.00 0.00 2.59
435 436 0.464554 GCCTCATTGCCCACTCTACC 60.465 60.000 0.00 0.00 0.00 3.18
436 437 0.179073 CCTCATTGCCCACTCTACCG 60.179 60.000 0.00 0.00 0.00 4.02
437 438 0.179073 CTCATTGCCCACTCTACCGG 60.179 60.000 0.00 0.00 0.00 5.28
438 439 1.153168 CATTGCCCACTCTACCGGG 60.153 63.158 6.32 0.00 46.15 5.73
439 440 1.615424 ATTGCCCACTCTACCGGGT 60.615 57.895 6.32 4.46 45.07 5.28
440 441 1.623542 ATTGCCCACTCTACCGGGTC 61.624 60.000 6.32 0.00 45.07 4.46
441 442 2.363925 GCCCACTCTACCGGGTCT 60.364 66.667 6.32 0.00 45.07 3.85
442 443 1.076485 GCCCACTCTACCGGGTCTA 60.076 63.158 6.32 0.00 45.07 2.59
443 444 1.390383 GCCCACTCTACCGGGTCTAC 61.390 65.000 6.32 0.00 45.07 2.59
444 445 0.033796 CCCACTCTACCGGGTCTACA 60.034 60.000 6.32 0.00 37.70 2.74
445 446 1.411216 CCCACTCTACCGGGTCTACAT 60.411 57.143 6.32 0.00 37.70 2.29
446 447 1.955080 CCACTCTACCGGGTCTACATC 59.045 57.143 6.32 0.00 0.00 3.06
447 448 1.955080 CACTCTACCGGGTCTACATCC 59.045 57.143 6.32 0.00 0.00 3.51
448 449 1.567649 ACTCTACCGGGTCTACATCCA 59.432 52.381 6.32 0.00 0.00 3.41
449 450 2.024655 ACTCTACCGGGTCTACATCCAA 60.025 50.000 6.32 0.00 0.00 3.53
450 451 2.361438 CTCTACCGGGTCTACATCCAAC 59.639 54.545 6.32 0.00 0.00 3.77
451 452 1.411612 CTACCGGGTCTACATCCAACC 59.588 57.143 6.32 0.00 0.00 3.77
456 457 1.751437 GGTCTACATCCAACCCTTGC 58.249 55.000 0.00 0.00 0.00 4.01
457 458 1.369625 GTCTACATCCAACCCTTGCG 58.630 55.000 0.00 0.00 0.00 4.85
458 459 0.392461 TCTACATCCAACCCTTGCGC 60.392 55.000 0.00 0.00 0.00 6.09
459 460 1.376609 CTACATCCAACCCTTGCGCC 61.377 60.000 4.18 0.00 0.00 6.53
460 461 1.847798 TACATCCAACCCTTGCGCCT 61.848 55.000 4.18 0.00 0.00 5.52
461 462 2.044946 ATCCAACCCTTGCGCCTC 60.045 61.111 4.18 0.00 0.00 4.70
462 463 3.976701 ATCCAACCCTTGCGCCTCG 62.977 63.158 4.18 0.00 0.00 4.63
476 477 4.263572 CTCGCCCACACCACCCAA 62.264 66.667 0.00 0.00 0.00 4.12
477 478 3.567579 CTCGCCCACACCACCCAAT 62.568 63.158 0.00 0.00 0.00 3.16
478 479 3.372730 CGCCCACACCACCCAATG 61.373 66.667 0.00 0.00 0.00 2.82
479 480 2.203625 GCCCACACCACCCAATGT 60.204 61.111 0.00 0.00 0.00 2.71
480 481 2.573083 GCCCACACCACCCAATGTG 61.573 63.158 0.00 0.00 44.79 3.21
514 515 9.677567 TTTCTTGTTAATCACATGTTAAGCTTC 57.322 29.630 0.00 0.00 34.43 3.86
522 523 4.074970 CACATGTTAAGCTTCCCTCTTGT 58.925 43.478 0.00 4.31 0.00 3.16
575 578 4.822350 TGACCTCACGATCTTCTACCATAG 59.178 45.833 0.00 0.00 0.00 2.23
602 605 4.160635 CCCGCGATTTGACGTGCC 62.161 66.667 8.23 0.00 41.50 5.01
604 607 2.749865 CCGCGATTTGACGTGCCAT 61.750 57.895 8.23 0.00 41.50 4.40
607 610 1.006832 GCGATTTGACGTGCCATACT 58.993 50.000 0.00 0.00 35.59 2.12
622 625 6.090088 CGTGCCATACTAAAATATCTGAGCTC 59.910 42.308 6.82 6.82 0.00 4.09
625 631 6.593382 GCCATACTAAAATATCTGAGCTCCTG 59.407 42.308 12.15 4.27 0.00 3.86
636 642 0.514691 GAGCTCCTGTTGTTCGCAAG 59.485 55.000 0.87 0.00 37.85 4.01
652 658 2.545526 CGCAAGAAAACAGAGCAGAGAA 59.454 45.455 0.00 0.00 43.02 2.87
674 680 2.038952 TCTGGTTTCATGACCTGTCCAG 59.961 50.000 17.40 17.40 40.47 3.86
694 701 7.870445 TGTCCAGTTTTGTTAGCCATTAAATTC 59.130 33.333 0.00 0.00 0.00 2.17
742 751 6.072728 TGCTAATACAAACCAGTTGATCACAC 60.073 38.462 0.00 0.00 39.87 3.82
786 795 1.508545 CTGACACCGATCAGCGTCT 59.491 57.895 0.00 0.00 39.77 4.18
794 803 0.030101 CGATCAGCGTCTCCTCTTCC 59.970 60.000 0.00 0.00 34.64 3.46
795 804 1.107114 GATCAGCGTCTCCTCTTCCA 58.893 55.000 0.00 0.00 0.00 3.53
796 805 0.820871 ATCAGCGTCTCCTCTTCCAC 59.179 55.000 0.00 0.00 0.00 4.02
798 807 0.605589 CAGCGTCTCCTCTTCCACTT 59.394 55.000 0.00 0.00 0.00 3.16
892 902 0.689080 GGCAGGACCTCAGATCTCCA 60.689 60.000 0.00 0.00 34.51 3.86
894 904 1.556911 GCAGGACCTCAGATCTCCAAA 59.443 52.381 0.00 0.00 0.00 3.28
942 952 1.679898 CAGACTTGTCCTCCACCCC 59.320 63.158 0.00 0.00 0.00 4.95
1015 1029 4.493747 GTCCGCCCGTCTCCTTCG 62.494 72.222 0.00 0.00 0.00 3.79
1021 1035 1.751162 CCCGTCTCCTTCGCTCTCT 60.751 63.158 0.00 0.00 0.00 3.10
1034 1048 1.802069 GCTCTCTGCCGTTTTTCTCT 58.198 50.000 0.00 0.00 35.15 3.10
1042 1056 1.071605 CCGTTTTTCTCTGCCTCTCG 58.928 55.000 0.00 0.00 0.00 4.04
1044 1058 0.440371 GTTTTTCTCTGCCTCTCGCG 59.560 55.000 0.00 0.00 42.08 5.87
1045 1059 1.291877 TTTTTCTCTGCCTCTCGCGC 61.292 55.000 0.00 0.00 42.08 6.86
1046 1060 2.434658 TTTTCTCTGCCTCTCGCGCA 62.435 55.000 8.75 0.00 42.08 6.09
1047 1061 3.633094 TTCTCTGCCTCTCGCGCAC 62.633 63.158 8.75 0.00 42.08 5.34
1073 1087 2.749839 CGCTCCCCGCATCCAAAA 60.750 61.111 0.00 0.00 39.08 2.44
1086 1100 1.007387 CCAAAAGCCAAGACGCACC 60.007 57.895 0.00 0.00 0.00 5.01
1331 1345 4.468689 GTCCTCCCGGGGCTTTCG 62.469 72.222 23.50 1.63 36.61 3.46
1619 1633 2.811317 CTGGTGCCGCTCTTCGAC 60.811 66.667 0.00 0.00 41.67 4.20
1745 1759 2.579738 GAGTCGTCCTTCCAGCCC 59.420 66.667 0.00 0.00 0.00 5.19
1910 1924 1.710919 CGACTCGTCGTCCTCTGAG 59.289 63.158 11.05 0.00 46.99 3.35
1931 1945 1.884464 CTCCACCGCATCCACATCG 60.884 63.158 0.00 0.00 0.00 3.84
2063 2077 2.659063 CGAGATGGTGGAGGTGGCA 61.659 63.158 0.00 0.00 0.00 4.92
2282 2296 2.586357 GAGATCGCCGCCAAGGTC 60.586 66.667 0.00 0.00 43.70 3.85
2331 2345 2.279120 GACCAGCTGATCTCGCCG 60.279 66.667 17.39 0.00 0.00 6.46
2332 2346 3.781770 GACCAGCTGATCTCGCCGG 62.782 68.421 17.39 0.00 0.00 6.13
2333 2347 3.531207 CCAGCTGATCTCGCCGGA 61.531 66.667 17.39 0.00 0.00 5.14
2388 2404 0.105039 CTCGAAGGAGGGGGAAATCG 59.895 60.000 0.00 0.00 36.61 3.34
2389 2405 0.324923 TCGAAGGAGGGGGAAATCGA 60.325 55.000 0.00 0.00 37.02 3.59
2390 2406 0.759346 CGAAGGAGGGGGAAATCGAT 59.241 55.000 0.00 0.00 32.38 3.59
2417 2434 8.065407 TCGATTAAACAACAACACTTGTATGTC 58.935 33.333 0.00 0.00 44.59 3.06
2444 2461 9.890352 ACTACTACTAAGTGAGAAAAGTAAACG 57.110 33.333 0.00 0.00 36.36 3.60
2455 2472 4.215613 AGAAAAGTAAACGAGGCCATGTTC 59.784 41.667 5.01 0.00 0.00 3.18
2456 2473 1.722011 AGTAAACGAGGCCATGTTCG 58.278 50.000 5.01 8.25 42.26 3.95
2457 2474 0.096454 GTAAACGAGGCCATGTTCGC 59.904 55.000 11.69 5.38 40.32 4.70
2458 2475 1.355796 TAAACGAGGCCATGTTCGCG 61.356 55.000 11.69 0.00 40.32 5.87
2482 2511 3.413558 CGCAAGTAAATTAAGCCGTGTC 58.586 45.455 0.00 0.00 0.00 3.67
2500 2529 0.459411 TCCACGTGCATGATGTACCG 60.459 55.000 14.17 6.10 28.65 4.02
2509 2538 2.097304 GCATGATGTACCGTCAATTGCA 59.903 45.455 14.28 0.00 36.20 4.08
2510 2539 3.789791 GCATGATGTACCGTCAATTGCAG 60.790 47.826 14.28 0.00 36.20 4.41
2515 2544 3.064207 TGTACCGTCAATTGCAGAGAAC 58.936 45.455 0.00 0.00 0.00 3.01
2522 2551 2.046313 CAATTGCAGAGAACACAACGC 58.954 47.619 0.00 0.00 0.00 4.84
2526 2555 1.227823 CAGAGAACACAACGCCCCA 60.228 57.895 0.00 0.00 0.00 4.96
2547 2576 4.394795 CAGAAATTAACGCTGTTCTTCCG 58.605 43.478 0.00 0.00 0.00 4.30
2552 2581 1.469335 AACGCTGTTCTTCCGAGGGA 61.469 55.000 0.00 0.00 0.00 4.20
2553 2582 1.258445 ACGCTGTTCTTCCGAGGGAT 61.258 55.000 0.00 0.00 0.00 3.85
2554 2583 0.528684 CGCTGTTCTTCCGAGGGATC 60.529 60.000 0.00 0.00 0.00 3.36
2555 2584 0.179070 GCTGTTCTTCCGAGGGATCC 60.179 60.000 1.92 1.92 0.00 3.36
2580 2609 1.074951 CCCTTGTGTTCCCCTCCAC 59.925 63.158 0.00 0.00 0.00 4.02
2602 2641 3.211865 GGATGGACGGTATCTTTTTCCC 58.788 50.000 0.00 0.00 0.00 3.97
2614 2653 0.387202 TTTTTCCCGTGTGCATGTGG 59.613 50.000 0.00 0.00 0.00 4.17
2618 2657 2.281414 CCGTGTGCATGTGGTGGA 60.281 61.111 0.00 0.00 0.00 4.02
2620 2659 0.392327 CCGTGTGCATGTGGTGGATA 60.392 55.000 0.00 0.00 0.00 2.59
2621 2660 0.726827 CGTGTGCATGTGGTGGATAC 59.273 55.000 0.00 0.00 37.01 2.24
2645 2689 2.757077 GTTAGGGCCTGGCTGTGT 59.243 61.111 18.53 3.33 0.00 3.72
2673 2717 8.519799 AATCTTATTCATTTACCAACCACGAT 57.480 30.769 0.00 0.00 0.00 3.73
2714 2758 4.162592 TGCCTTTGCAGTCACTGG 57.837 55.556 7.00 0.00 44.23 4.00
2715 2759 1.227102 TGCCTTTGCAGTCACTGGT 59.773 52.632 7.00 0.00 44.23 4.00
2716 2760 0.472044 TGCCTTTGCAGTCACTGGTA 59.528 50.000 7.00 0.00 44.23 3.25
2718 2762 1.470098 GCCTTTGCAGTCACTGGTATG 59.530 52.381 7.00 0.00 37.47 2.39
2720 2764 2.086869 CTTTGCAGTCACTGGTATGGG 58.913 52.381 7.00 0.00 31.21 4.00
2721 2765 1.064003 TTGCAGTCACTGGTATGGGT 58.936 50.000 7.00 0.00 31.21 4.51
2722 2766 1.945580 TGCAGTCACTGGTATGGGTA 58.054 50.000 7.00 0.00 31.21 3.69
2737 2784 8.975925 TGGTATGGGTATATAGTATCCACAAA 57.024 34.615 0.00 0.00 0.00 2.83
2779 2826 2.945080 ACTTCGATGCATCCATCCAT 57.055 45.000 20.87 0.00 44.00 3.41
2780 2827 2.775890 ACTTCGATGCATCCATCCATC 58.224 47.619 20.87 0.00 44.00 3.51
2781 2828 2.082231 CTTCGATGCATCCATCCATCC 58.918 52.381 20.87 0.00 44.00 3.51
2782 2829 1.058284 TCGATGCATCCATCCATCCA 58.942 50.000 20.87 0.00 44.00 3.41
2783 2830 1.420891 TCGATGCATCCATCCATCCAA 59.579 47.619 20.87 0.00 44.00 3.53
2784 2831 2.040679 TCGATGCATCCATCCATCCAAT 59.959 45.455 20.87 0.00 44.00 3.16
2796 2843 1.677576 CCATCCAATGATCCAACCGTG 59.322 52.381 0.00 0.00 0.00 4.94
2798 2845 2.401583 TCCAATGATCCAACCGTGAG 57.598 50.000 0.00 0.00 0.00 3.51
2813 2860 0.802607 GTGAGGGATCACGCGAGAAC 60.803 60.000 15.93 9.64 0.00 3.01
2832 2883 1.202973 CTTACAGGATCACGCGCTCG 61.203 60.000 5.73 0.00 42.43 5.03
2833 2884 3.751401 TACAGGATCACGCGCTCGC 62.751 63.158 5.73 3.90 39.84 5.03
2854 2905 1.883209 GCTTTACAACGGCTAACCCCA 60.883 52.381 0.00 0.00 0.00 4.96
2855 2906 2.718563 CTTTACAACGGCTAACCCCAT 58.281 47.619 0.00 0.00 0.00 4.00
2856 2907 2.883122 TTACAACGGCTAACCCCATT 57.117 45.000 0.00 0.00 0.00 3.16
2857 2908 2.883122 TACAACGGCTAACCCCATTT 57.117 45.000 0.00 0.00 0.00 2.32
2858 2909 1.253100 ACAACGGCTAACCCCATTTG 58.747 50.000 0.00 0.00 0.00 2.32
2859 2910 0.108851 CAACGGCTAACCCCATTTGC 60.109 55.000 0.00 0.00 38.21 3.68
2860 2911 0.540830 AACGGCTAACCCCATTTGCA 60.541 50.000 0.00 0.00 40.40 4.08
2861 2912 0.324275 ACGGCTAACCCCATTTGCAT 60.324 50.000 0.00 0.00 40.40 3.96
2863 2914 2.028130 CGGCTAACCCCATTTGCATTA 58.972 47.619 0.00 0.00 40.40 1.90
2943 2994 1.444895 GCGTGCATGCTTTCCTTGG 60.445 57.895 23.72 0.28 0.00 3.61
2947 2998 1.079612 GCATGCTTTCCTTGGGTGC 60.080 57.895 11.37 0.00 0.00 5.01
2955 3006 0.609957 TTCCTTGGGTGCTCAGCATG 60.610 55.000 0.54 0.00 41.91 4.06
2962 3013 1.818785 GTGCTCAGCATGCTCCTCC 60.819 63.158 19.68 7.22 41.91 4.30
2963 3014 1.993948 TGCTCAGCATGCTCCTCCT 60.994 57.895 19.68 0.00 34.76 3.69
2964 3015 1.227615 GCTCAGCATGCTCCTCCTC 60.228 63.158 19.68 0.07 34.76 3.71
2968 3019 0.464013 CAGCATGCTCCTCCTCCAAG 60.464 60.000 19.68 0.00 0.00 3.61
3005 3056 3.243501 TGCAAACCAAGCAAGAACATCTC 60.244 43.478 0.00 0.00 39.39 2.75
3009 3060 3.554934 ACCAAGCAAGAACATCTCAACA 58.445 40.909 0.00 0.00 0.00 3.33
3016 3067 4.340263 CAAGAACATCTCAACATGCATCG 58.660 43.478 0.00 0.00 0.00 3.84
3018 3069 3.373130 AGAACATCTCAACATGCATCGTG 59.627 43.478 0.00 0.00 0.00 4.35
3045 3096 2.502538 AGTGGCTGGCGGTAACTAATTA 59.497 45.455 0.00 0.00 0.00 1.40
3046 3097 2.870411 GTGGCTGGCGGTAACTAATTAG 59.130 50.000 11.05 11.05 0.00 1.73
3050 3101 3.739810 GCTGGCGGTAACTAATTAGTAGC 59.260 47.826 18.31 16.43 34.99 3.58
3065 3116 2.114670 TAGCAAGCAATCGCCCTGC 61.115 57.895 0.00 0.00 44.18 4.85
3090 3141 7.042456 GCTTTTCTTTTCTTTTCTTAAGCAGGG 60.042 37.037 0.00 0.00 36.42 4.45
3114 3165 0.178947 AGGGACATCGGGAGAGGATC 60.179 60.000 0.00 0.00 44.82 3.36
3115 3166 1.528292 GGGACATCGGGAGAGGATCG 61.528 65.000 0.00 0.00 44.82 3.69
3118 3169 1.228583 CATCGGGAGAGGATCGGGA 60.229 63.158 0.00 0.00 44.82 5.14
3119 3170 1.075836 ATCGGGAGAGGATCGGGAG 59.924 63.158 0.00 0.00 45.48 4.30
3144 3217 1.377333 CCGTCCCTTTCCTTGCCTC 60.377 63.158 0.00 0.00 0.00 4.70
3403 3499 0.109597 CGATGGACAGCTTTGTTGCC 60.110 55.000 0.00 0.00 0.00 4.52
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 1.676384 GGCTATGAGCTGCCCTAGG 59.324 63.158 0.06 0.06 43.11 3.02
8 9 3.275338 GCGGTGGCTATGAGCTGC 61.275 66.667 0.00 0.00 41.99 5.25
9 10 2.176273 GTGCGGTGGCTATGAGCTG 61.176 63.158 0.00 0.00 41.99 4.24
10 11 2.187946 GTGCGGTGGCTATGAGCT 59.812 61.111 0.00 0.00 41.99 4.09
11 12 1.884926 GAGTGCGGTGGCTATGAGC 60.885 63.158 0.00 0.00 41.46 4.26
12 13 1.227380 GGAGTGCGGTGGCTATGAG 60.227 63.158 0.00 0.00 40.82 2.90
13 14 2.731571 GGGAGTGCGGTGGCTATGA 61.732 63.158 0.00 0.00 40.82 2.15
14 15 2.203070 GGGAGTGCGGTGGCTATG 60.203 66.667 0.00 0.00 40.82 2.23
15 16 2.365635 AGGGAGTGCGGTGGCTAT 60.366 61.111 0.00 0.00 40.82 2.97
16 17 3.390521 CAGGGAGTGCGGTGGCTA 61.391 66.667 0.00 0.00 40.82 3.93
20 21 4.742201 CCGTCAGGGAGTGCGGTG 62.742 72.222 0.00 0.00 39.55 4.94
30 31 3.322466 AGCAAGGACCCCGTCAGG 61.322 66.667 0.00 0.00 33.68 3.86
31 32 2.046892 CAGCAAGGACCCCGTCAG 60.047 66.667 0.00 0.00 33.68 3.51
33 34 1.026718 CATTCAGCAAGGACCCCGTC 61.027 60.000 0.00 0.00 0.00 4.79
34 35 1.002134 CATTCAGCAAGGACCCCGT 60.002 57.895 0.00 0.00 0.00 5.28
36 37 0.251341 ACACATTCAGCAAGGACCCC 60.251 55.000 0.00 0.00 0.00 4.95
37 38 0.883833 CACACATTCAGCAAGGACCC 59.116 55.000 0.00 0.00 0.00 4.46
38 39 0.883833 CCACACATTCAGCAAGGACC 59.116 55.000 0.00 0.00 0.00 4.46
39 40 0.883833 CCCACACATTCAGCAAGGAC 59.116 55.000 0.00 0.00 0.00 3.85
42 43 1.331214 AACCCCACACATTCAGCAAG 58.669 50.000 0.00 0.00 0.00 4.01
43 44 1.686052 GAAACCCCACACATTCAGCAA 59.314 47.619 0.00 0.00 0.00 3.91
44 45 1.327303 GAAACCCCACACATTCAGCA 58.673 50.000 0.00 0.00 0.00 4.41
45 46 0.240945 CGAAACCCCACACATTCAGC 59.759 55.000 0.00 0.00 0.00 4.26
49 50 0.538746 GACCCGAAACCCCACACATT 60.539 55.000 0.00 0.00 0.00 2.71
50 51 1.074248 GACCCGAAACCCCACACAT 59.926 57.895 0.00 0.00 0.00 3.21
54 55 2.059345 TTGAGGACCCGAAACCCCAC 62.059 60.000 0.00 0.00 0.00 4.61
55 56 1.354168 TTTGAGGACCCGAAACCCCA 61.354 55.000 0.00 0.00 0.00 4.96
56 57 0.178984 TTTTGAGGACCCGAAACCCC 60.179 55.000 0.00 0.00 0.00 4.95
58 59 1.977056 ACTTTTGAGGACCCGAAACC 58.023 50.000 0.00 0.00 0.00 3.27
59 60 4.357142 GAAAACTTTTGAGGACCCGAAAC 58.643 43.478 0.00 0.00 0.00 2.78
60 61 3.382227 GGAAAACTTTTGAGGACCCGAAA 59.618 43.478 0.00 0.00 0.00 3.46
62 63 2.173996 AGGAAAACTTTTGAGGACCCGA 59.826 45.455 0.00 0.00 0.00 5.14
63 64 2.293399 CAGGAAAACTTTTGAGGACCCG 59.707 50.000 0.00 0.00 0.00 5.28
64 65 3.068165 CACAGGAAAACTTTTGAGGACCC 59.932 47.826 0.00 0.00 0.00 4.46
65 66 3.068165 CCACAGGAAAACTTTTGAGGACC 59.932 47.826 0.00 0.00 0.00 4.46
67 68 4.243793 TCCACAGGAAAACTTTTGAGGA 57.756 40.909 0.00 0.00 0.00 3.71
68 69 4.584325 TGATCCACAGGAAAACTTTTGAGG 59.416 41.667 0.00 0.00 34.34 3.86
69 70 5.523369 GTGATCCACAGGAAAACTTTTGAG 58.477 41.667 0.00 0.00 34.34 3.02
70 71 4.036262 CGTGATCCACAGGAAAACTTTTGA 59.964 41.667 0.00 0.00 34.34 2.69
71 72 4.290155 CGTGATCCACAGGAAAACTTTTG 58.710 43.478 0.00 0.00 34.34 2.44
72 73 3.243401 GCGTGATCCACAGGAAAACTTTT 60.243 43.478 0.00 0.00 34.34 2.27
73 74 2.293399 GCGTGATCCACAGGAAAACTTT 59.707 45.455 0.00 0.00 34.34 2.66
74 75 1.880027 GCGTGATCCACAGGAAAACTT 59.120 47.619 0.00 0.00 34.34 2.66
76 77 1.523758 AGCGTGATCCACAGGAAAAC 58.476 50.000 0.00 0.00 34.34 2.43
77 78 2.151202 GAAGCGTGATCCACAGGAAAA 58.849 47.619 0.00 0.00 34.34 2.29
78 79 1.071542 TGAAGCGTGATCCACAGGAAA 59.928 47.619 0.00 0.00 34.34 3.13
79 80 0.684535 TGAAGCGTGATCCACAGGAA 59.315 50.000 0.00 0.00 34.34 3.36
81 82 0.742281 CCTGAAGCGTGATCCACAGG 60.742 60.000 0.00 0.00 38.77 4.00
82 83 1.364626 GCCTGAAGCGTGATCCACAG 61.365 60.000 0.00 0.00 33.40 3.66
83 84 1.375908 GCCTGAAGCGTGATCCACA 60.376 57.895 0.00 0.00 33.40 4.17
93 94 0.108138 TAAGAAGCCTCGCCTGAAGC 60.108 55.000 0.00 0.00 38.52 3.86
95 96 2.423577 GTTTAAGAAGCCTCGCCTGAA 58.576 47.619 0.00 0.00 0.00 3.02
96 97 1.671850 CGTTTAAGAAGCCTCGCCTGA 60.672 52.381 0.00 0.00 0.00 3.86
97 98 0.721718 CGTTTAAGAAGCCTCGCCTG 59.278 55.000 0.00 0.00 0.00 4.85
99 100 0.442699 CACGTTTAAGAAGCCTCGCC 59.557 55.000 0.00 0.00 0.00 5.54
102 103 2.689646 AGCTCACGTTTAAGAAGCCTC 58.310 47.619 0.00 0.00 0.00 4.70
103 104 2.841442 AGCTCACGTTTAAGAAGCCT 57.159 45.000 0.00 0.00 0.00 4.58
104 105 3.309954 CCATAGCTCACGTTTAAGAAGCC 59.690 47.826 0.00 0.00 0.00 4.35
106 107 4.201724 GCACCATAGCTCACGTTTAAGAAG 60.202 45.833 0.00 0.00 0.00 2.85
107 108 3.682858 GCACCATAGCTCACGTTTAAGAA 59.317 43.478 0.00 0.00 0.00 2.52
108 109 3.259064 GCACCATAGCTCACGTTTAAGA 58.741 45.455 0.00 0.00 0.00 2.10
109 110 3.000041 TGCACCATAGCTCACGTTTAAG 59.000 45.455 0.00 0.00 34.99 1.85
110 111 2.739913 GTGCACCATAGCTCACGTTTAA 59.260 45.455 5.22 0.00 34.99 1.52
111 112 2.343101 GTGCACCATAGCTCACGTTTA 58.657 47.619 5.22 0.00 34.99 2.01
112 113 1.156736 GTGCACCATAGCTCACGTTT 58.843 50.000 5.22 0.00 34.99 3.60
113 114 0.673644 GGTGCACCATAGCTCACGTT 60.674 55.000 31.23 0.00 35.64 3.99
114 115 1.079127 GGTGCACCATAGCTCACGT 60.079 57.895 31.23 0.00 35.64 4.49
115 116 1.079197 TGGTGCACCATAGCTCACG 60.079 57.895 34.74 0.00 42.01 4.35
124 125 2.842462 ACCGAGAGTGGTGCACCA 60.842 61.111 34.74 34.74 41.85 4.17
133 134 1.254954 GTACCTCCAACACCGAGAGT 58.745 55.000 0.00 0.00 0.00 3.24
134 135 1.067776 GTGTACCTCCAACACCGAGAG 60.068 57.143 0.00 0.00 41.10 3.20
135 136 0.963962 GTGTACCTCCAACACCGAGA 59.036 55.000 0.00 0.00 41.10 4.04
136 137 0.388134 CGTGTACCTCCAACACCGAG 60.388 60.000 1.11 0.00 43.46 4.63
137 138 1.661480 CGTGTACCTCCAACACCGA 59.339 57.895 1.11 0.00 43.46 4.69
138 139 1.373748 CCGTGTACCTCCAACACCG 60.374 63.158 1.11 0.00 43.46 4.94
139 140 0.601841 CACCGTGTACCTCCAACACC 60.602 60.000 1.11 0.00 43.46 4.16
140 141 0.390124 TCACCGTGTACCTCCAACAC 59.610 55.000 0.00 0.00 43.04 3.32
141 142 1.001520 CATCACCGTGTACCTCCAACA 59.998 52.381 0.00 0.00 0.00 3.33
142 143 1.001633 ACATCACCGTGTACCTCCAAC 59.998 52.381 0.00 0.00 0.00 3.77
143 144 1.001520 CACATCACCGTGTACCTCCAA 59.998 52.381 0.00 0.00 32.00 3.53
144 145 0.606096 CACATCACCGTGTACCTCCA 59.394 55.000 0.00 0.00 32.00 3.86
145 146 3.436001 CACATCACCGTGTACCTCC 57.564 57.895 0.00 0.00 32.00 4.30
153 154 0.179094 ACACACGAACACATCACCGT 60.179 50.000 0.00 0.00 35.46 4.83
154 155 0.232046 CACACACGAACACATCACCG 59.768 55.000 0.00 0.00 0.00 4.94
155 156 1.526887 CTCACACACGAACACATCACC 59.473 52.381 0.00 0.00 0.00 4.02
156 157 1.070577 GCTCACACACGAACACATCAC 60.071 52.381 0.00 0.00 0.00 3.06
157 158 1.217001 GCTCACACACGAACACATCA 58.783 50.000 0.00 0.00 0.00 3.07
158 159 1.217001 TGCTCACACACGAACACATC 58.783 50.000 0.00 0.00 0.00 3.06
159 160 1.662517 TTGCTCACACACGAACACAT 58.337 45.000 0.00 0.00 0.00 3.21
160 161 1.443802 TTTGCTCACACACGAACACA 58.556 45.000 0.00 0.00 0.00 3.72
161 162 2.535934 TTTTGCTCACACACGAACAC 57.464 45.000 0.00 0.00 0.00 3.32
162 163 2.680339 TGATTTTGCTCACACACGAACA 59.320 40.909 0.00 0.00 0.00 3.18
163 164 3.332761 TGATTTTGCTCACACACGAAC 57.667 42.857 0.00 0.00 0.00 3.95
164 165 5.878332 ATATGATTTTGCTCACACACGAA 57.122 34.783 0.00 0.00 0.00 3.85
165 166 8.831715 ATATATATGATTTTGCTCACACACGA 57.168 30.769 0.00 0.00 0.00 4.35
166 167 9.882996 AAATATATATGATTTTGCTCACACACG 57.117 29.630 0.00 0.00 0.00 4.49
191 192 9.620259 ACCACTTTAATCTAAATTTTGGCAAAA 57.380 25.926 25.94 25.94 30.74 2.44
193 194 9.921637 CTACCACTTTAATCTAAATTTTGGCAA 57.078 29.630 0.00 0.00 30.74 4.52
194 195 8.032451 GCTACCACTTTAATCTAAATTTTGGCA 58.968 33.333 0.00 0.00 30.74 4.92
195 196 7.491372 GGCTACCACTTTAATCTAAATTTTGGC 59.509 37.037 0.00 0.00 30.74 4.52
196 197 8.749354 AGGCTACCACTTTAATCTAAATTTTGG 58.251 33.333 0.00 0.00 32.46 3.28
201 202 9.309224 ACAAAAGGCTACCACTTTAATCTAAAT 57.691 29.630 0.00 0.00 37.18 1.40
202 203 8.700439 ACAAAAGGCTACCACTTTAATCTAAA 57.300 30.769 0.00 0.00 37.18 1.85
203 204 8.573035 CAACAAAAGGCTACCACTTTAATCTAA 58.427 33.333 0.00 0.00 37.18 2.10
204 205 7.940137 TCAACAAAAGGCTACCACTTTAATCTA 59.060 33.333 0.00 0.00 37.18 1.98
205 206 6.775629 TCAACAAAAGGCTACCACTTTAATCT 59.224 34.615 0.00 0.00 37.18 2.40
206 207 6.861572 GTCAACAAAAGGCTACCACTTTAATC 59.138 38.462 0.00 0.00 37.18 1.75
207 208 6.514376 CGTCAACAAAAGGCTACCACTTTAAT 60.514 38.462 0.00 0.00 37.18 1.40
208 209 5.220892 CGTCAACAAAAGGCTACCACTTTAA 60.221 40.000 0.00 0.00 37.18 1.52
209 210 4.273969 CGTCAACAAAAGGCTACCACTTTA 59.726 41.667 0.00 0.00 37.18 1.85
210 211 3.066203 CGTCAACAAAAGGCTACCACTTT 59.934 43.478 0.00 0.00 39.69 2.66
211 212 2.616842 CGTCAACAAAAGGCTACCACTT 59.383 45.455 0.00 0.00 0.00 3.16
212 213 2.218603 CGTCAACAAAAGGCTACCACT 58.781 47.619 0.00 0.00 0.00 4.00
213 214 1.944709 ACGTCAACAAAAGGCTACCAC 59.055 47.619 0.00 0.00 0.00 4.16
214 215 2.335316 ACGTCAACAAAAGGCTACCA 57.665 45.000 0.00 0.00 0.00 3.25
215 216 3.703286 AAACGTCAACAAAAGGCTACC 57.297 42.857 0.00 0.00 0.00 3.18
216 217 4.664188 TCAAAACGTCAACAAAAGGCTAC 58.336 39.130 0.00 0.00 0.00 3.58
217 218 4.966965 TCAAAACGTCAACAAAAGGCTA 57.033 36.364 0.00 0.00 0.00 3.93
218 219 3.859411 TCAAAACGTCAACAAAAGGCT 57.141 38.095 0.00 0.00 0.00 4.58
219 220 4.387559 ACTTTCAAAACGTCAACAAAAGGC 59.612 37.500 12.18 0.00 0.00 4.35
220 221 5.164002 CCACTTTCAAAACGTCAACAAAAGG 60.164 40.000 12.18 2.97 0.00 3.11
221 222 5.404066 ACCACTTTCAAAACGTCAACAAAAG 59.596 36.000 0.00 0.00 0.00 2.27
222 223 5.290386 ACCACTTTCAAAACGTCAACAAAA 58.710 33.333 0.00 0.00 0.00 2.44
223 224 4.872664 ACCACTTTCAAAACGTCAACAAA 58.127 34.783 0.00 0.00 0.00 2.83
224 225 4.506886 ACCACTTTCAAAACGTCAACAA 57.493 36.364 0.00 0.00 0.00 2.83
225 226 4.696402 ACTACCACTTTCAAAACGTCAACA 59.304 37.500 0.00 0.00 0.00 3.33
226 227 5.225899 ACTACCACTTTCAAAACGTCAAC 57.774 39.130 0.00 0.00 0.00 3.18
227 228 5.411977 TGAACTACCACTTTCAAAACGTCAA 59.588 36.000 0.00 0.00 0.00 3.18
228 229 4.936411 TGAACTACCACTTTCAAAACGTCA 59.064 37.500 0.00 0.00 0.00 4.35
229 230 5.064325 ACTGAACTACCACTTTCAAAACGTC 59.936 40.000 0.00 0.00 31.41 4.34
230 231 4.939439 ACTGAACTACCACTTTCAAAACGT 59.061 37.500 0.00 0.00 31.41 3.99
231 232 5.263185 CACTGAACTACCACTTTCAAAACG 58.737 41.667 0.00 0.00 31.41 3.60
232 233 5.449999 CCCACTGAACTACCACTTTCAAAAC 60.450 44.000 0.00 0.00 31.41 2.43
233 234 4.642885 CCCACTGAACTACCACTTTCAAAA 59.357 41.667 0.00 0.00 31.41 2.44
234 235 4.080243 TCCCACTGAACTACCACTTTCAAA 60.080 41.667 0.00 0.00 31.41 2.69
235 236 3.456644 TCCCACTGAACTACCACTTTCAA 59.543 43.478 0.00 0.00 31.41 2.69
236 237 3.042682 TCCCACTGAACTACCACTTTCA 58.957 45.455 0.00 0.00 0.00 2.69
237 238 3.764237 TCCCACTGAACTACCACTTTC 57.236 47.619 0.00 0.00 0.00 2.62
238 239 4.595781 TGTATCCCACTGAACTACCACTTT 59.404 41.667 0.00 0.00 0.00 2.66
239 240 4.164981 TGTATCCCACTGAACTACCACTT 58.835 43.478 0.00 0.00 0.00 3.16
240 241 3.786553 TGTATCCCACTGAACTACCACT 58.213 45.455 0.00 0.00 0.00 4.00
241 242 4.251268 GTTGTATCCCACTGAACTACCAC 58.749 47.826 0.00 0.00 0.00 4.16
242 243 3.262405 GGTTGTATCCCACTGAACTACCA 59.738 47.826 0.00 0.00 37.58 3.25
243 244 3.677976 CGGTTGTATCCCACTGAACTACC 60.678 52.174 0.00 0.00 35.33 3.18
244 245 3.056322 ACGGTTGTATCCCACTGAACTAC 60.056 47.826 0.00 0.00 0.00 2.73
245 246 3.056393 CACGGTTGTATCCCACTGAACTA 60.056 47.826 0.00 0.00 0.00 2.24
246 247 1.975680 ACGGTTGTATCCCACTGAACT 59.024 47.619 0.00 0.00 0.00 3.01
247 248 2.073816 CACGGTTGTATCCCACTGAAC 58.926 52.381 0.00 0.00 0.00 3.18
248 249 1.972075 TCACGGTTGTATCCCACTGAA 59.028 47.619 0.00 0.00 0.00 3.02
249 250 1.634960 TCACGGTTGTATCCCACTGA 58.365 50.000 0.00 0.00 0.00 3.41
250 251 2.465860 TTCACGGTTGTATCCCACTG 57.534 50.000 0.00 0.00 0.00 3.66
251 252 2.304761 ACATTCACGGTTGTATCCCACT 59.695 45.455 0.00 0.00 0.00 4.00
252 253 2.418628 CACATTCACGGTTGTATCCCAC 59.581 50.000 0.00 0.00 0.00 4.61
253 254 2.303311 TCACATTCACGGTTGTATCCCA 59.697 45.455 0.00 0.00 0.00 4.37
254 255 2.980568 TCACATTCACGGTTGTATCCC 58.019 47.619 0.00 0.00 0.00 3.85
255 256 6.861065 ATAATCACATTCACGGTTGTATCC 57.139 37.500 0.00 0.00 0.00 2.59
256 257 9.567848 AAAAATAATCACATTCACGGTTGTATC 57.432 29.630 0.00 0.00 0.00 2.24
280 281 9.325198 ACATATACTCATGCGTATTTGAGAAAA 57.675 29.630 24.14 3.96 41.53 2.29
281 282 8.887036 ACATATACTCATGCGTATTTGAGAAA 57.113 30.769 24.14 4.55 41.53 2.52
283 284 9.788960 GATACATATACTCATGCGTATTTGAGA 57.211 33.333 24.14 15.41 41.53 3.27
284 285 9.573133 TGATACATATACTCATGCGTATTTGAG 57.427 33.333 24.14 11.60 43.97 3.02
291 292 8.876790 CAATGAATGATACATATACTCATGCGT 58.123 33.333 0.00 0.00 28.94 5.24
292 293 8.876790 ACAATGAATGATACATATACTCATGCG 58.123 33.333 0.00 0.00 28.94 4.73
303 304 8.917088 CCCTTCCTTTTACAATGAATGATACAT 58.083 33.333 0.00 0.00 0.00 2.29
304 305 7.341769 CCCCTTCCTTTTACAATGAATGATACA 59.658 37.037 0.00 0.00 0.00 2.29
305 306 7.559897 TCCCCTTCCTTTTACAATGAATGATAC 59.440 37.037 0.00 0.00 0.00 2.24
306 307 7.647827 TCCCCTTCCTTTTACAATGAATGATA 58.352 34.615 0.00 0.00 0.00 2.15
307 308 6.502138 TCCCCTTCCTTTTACAATGAATGAT 58.498 36.000 0.00 0.00 0.00 2.45
308 309 5.898120 TCCCCTTCCTTTTACAATGAATGA 58.102 37.500 0.00 0.00 0.00 2.57
309 310 6.437162 TCTTCCCCTTCCTTTTACAATGAATG 59.563 38.462 0.00 0.00 0.00 2.67
310 311 6.561294 TCTTCCCCTTCCTTTTACAATGAAT 58.439 36.000 0.00 0.00 0.00 2.57
311 312 5.959512 TCTTCCCCTTCCTTTTACAATGAA 58.040 37.500 0.00 0.00 0.00 2.57
312 313 5.592587 TCTTCCCCTTCCTTTTACAATGA 57.407 39.130 0.00 0.00 0.00 2.57
313 314 5.336770 GCTTCTTCCCCTTCCTTTTACAATG 60.337 44.000 0.00 0.00 0.00 2.82
314 315 4.772624 GCTTCTTCCCCTTCCTTTTACAAT 59.227 41.667 0.00 0.00 0.00 2.71
315 316 4.141018 AGCTTCTTCCCCTTCCTTTTACAA 60.141 41.667 0.00 0.00 0.00 2.41
316 317 3.397955 AGCTTCTTCCCCTTCCTTTTACA 59.602 43.478 0.00 0.00 0.00 2.41
317 318 4.011023 GAGCTTCTTCCCCTTCCTTTTAC 58.989 47.826 0.00 0.00 0.00 2.01
318 319 3.010250 GGAGCTTCTTCCCCTTCCTTTTA 59.990 47.826 0.00 0.00 0.00 1.52
319 320 2.225142 GGAGCTTCTTCCCCTTCCTTTT 60.225 50.000 0.00 0.00 0.00 2.27
320 321 1.356059 GGAGCTTCTTCCCCTTCCTTT 59.644 52.381 0.00 0.00 0.00 3.11
321 322 0.995803 GGAGCTTCTTCCCCTTCCTT 59.004 55.000 0.00 0.00 0.00 3.36
322 323 2.703405 GGAGCTTCTTCCCCTTCCT 58.297 57.895 0.00 0.00 0.00 3.36
329 330 1.962321 GACCTCGGGGAGCTTCTTCC 61.962 65.000 9.33 0.00 36.46 3.46
330 331 1.258445 TGACCTCGGGGAGCTTCTTC 61.258 60.000 9.33 0.00 36.25 2.87
331 332 1.229209 TGACCTCGGGGAGCTTCTT 60.229 57.895 9.33 0.00 36.25 2.52
332 333 1.985116 GTGACCTCGGGGAGCTTCT 60.985 63.158 9.33 0.00 36.25 2.85
333 334 1.617947 ATGTGACCTCGGGGAGCTTC 61.618 60.000 9.33 0.00 36.25 3.86
334 335 1.201429 AATGTGACCTCGGGGAGCTT 61.201 55.000 9.33 0.00 36.25 3.74
335 336 1.201429 AAATGTGACCTCGGGGAGCT 61.201 55.000 9.33 0.00 36.25 4.09
336 337 0.539986 TAAATGTGACCTCGGGGAGC 59.460 55.000 9.33 0.00 36.25 4.70
337 338 1.553248 TGTAAATGTGACCTCGGGGAG 59.447 52.381 9.33 0.00 36.25 4.30
338 339 1.646912 TGTAAATGTGACCTCGGGGA 58.353 50.000 9.33 0.00 36.25 4.81
339 340 2.483014 TTGTAAATGTGACCTCGGGG 57.517 50.000 0.00 0.00 38.88 5.73
340 341 3.343617 ACATTGTAAATGTGACCTCGGG 58.656 45.455 4.86 0.00 0.00 5.14
341 342 5.371115 AAACATTGTAAATGTGACCTCGG 57.629 39.130 6.39 0.00 31.80 4.63
342 343 8.964420 AAATAAACATTGTAAATGTGACCTCG 57.036 30.769 6.39 0.00 31.80 4.63
343 344 9.353999 GGAAATAAACATTGTAAATGTGACCTC 57.646 33.333 6.39 1.68 31.80 3.85
344 345 8.865090 TGGAAATAAACATTGTAAATGTGACCT 58.135 29.630 6.39 0.00 31.80 3.85
345 346 9.651913 ATGGAAATAAACATTGTAAATGTGACC 57.348 29.630 6.39 5.43 31.80 4.02
366 367 5.186797 GGTGTGGGATAAATTTCACATGGAA 59.813 40.000 12.07 0.00 41.33 3.53
367 368 4.709397 GGTGTGGGATAAATTTCACATGGA 59.291 41.667 12.07 0.00 41.33 3.41
368 369 4.465660 TGGTGTGGGATAAATTTCACATGG 59.534 41.667 12.07 0.00 41.33 3.66
369 370 5.410067 GTGGTGTGGGATAAATTTCACATG 58.590 41.667 12.07 0.00 41.33 3.21
370 371 4.466015 GGTGGTGTGGGATAAATTTCACAT 59.534 41.667 12.07 0.00 41.33 3.21
371 372 3.829601 GGTGGTGTGGGATAAATTTCACA 59.170 43.478 6.39 6.39 37.73 3.58
372 373 3.194755 GGGTGGTGTGGGATAAATTTCAC 59.805 47.826 0.00 0.00 0.00 3.18
373 374 3.181417 TGGGTGGTGTGGGATAAATTTCA 60.181 43.478 0.00 0.00 0.00 2.69
374 375 3.436243 TGGGTGGTGTGGGATAAATTTC 58.564 45.455 0.00 0.00 0.00 2.17
375 376 3.551635 TGGGTGGTGTGGGATAAATTT 57.448 42.857 0.00 0.00 0.00 1.82
376 377 3.440127 CTTGGGTGGTGTGGGATAAATT 58.560 45.455 0.00 0.00 0.00 1.82
377 378 2.888069 GCTTGGGTGGTGTGGGATAAAT 60.888 50.000 0.00 0.00 0.00 1.40
378 379 1.549037 GCTTGGGTGGTGTGGGATAAA 60.549 52.381 0.00 0.00 0.00 1.40
379 380 0.039035 GCTTGGGTGGTGTGGGATAA 59.961 55.000 0.00 0.00 0.00 1.75
380 381 0.844661 AGCTTGGGTGGTGTGGGATA 60.845 55.000 0.00 0.00 0.00 2.59
381 382 1.729267 AAGCTTGGGTGGTGTGGGAT 61.729 55.000 0.00 0.00 0.00 3.85
382 383 2.351924 GAAGCTTGGGTGGTGTGGGA 62.352 60.000 2.10 0.00 0.00 4.37
383 384 1.903404 GAAGCTTGGGTGGTGTGGG 60.903 63.158 2.10 0.00 0.00 4.61
384 385 0.400213 TAGAAGCTTGGGTGGTGTGG 59.600 55.000 2.10 0.00 0.00 4.17
385 386 1.072331 AGTAGAAGCTTGGGTGGTGTG 59.928 52.381 2.10 0.00 0.00 3.82
386 387 1.435256 AGTAGAAGCTTGGGTGGTGT 58.565 50.000 2.10 0.00 0.00 4.16
387 388 2.674177 CGTAGTAGAAGCTTGGGTGGTG 60.674 54.545 2.10 0.00 0.00 4.17
388 389 1.549170 CGTAGTAGAAGCTTGGGTGGT 59.451 52.381 2.10 0.00 0.00 4.16
389 390 1.134788 CCGTAGTAGAAGCTTGGGTGG 60.135 57.143 2.10 0.00 0.00 4.61
390 391 1.822990 TCCGTAGTAGAAGCTTGGGTG 59.177 52.381 2.10 0.00 0.00 4.61
391 392 1.823610 GTCCGTAGTAGAAGCTTGGGT 59.176 52.381 2.10 0.00 0.00 4.51
392 393 2.100989 AGTCCGTAGTAGAAGCTTGGG 58.899 52.381 2.10 0.00 0.00 4.12
393 394 3.946558 AGTAGTCCGTAGTAGAAGCTTGG 59.053 47.826 2.10 0.00 0.00 3.61
394 395 4.731193 GCAGTAGTCCGTAGTAGAAGCTTG 60.731 50.000 2.10 0.00 0.00 4.01
395 396 3.377798 GCAGTAGTCCGTAGTAGAAGCTT 59.622 47.826 0.00 0.00 0.00 3.74
396 397 2.944349 GCAGTAGTCCGTAGTAGAAGCT 59.056 50.000 0.00 0.00 0.00 3.74
397 398 2.033174 GGCAGTAGTCCGTAGTAGAAGC 59.967 54.545 0.00 0.00 0.00 3.86
398 399 3.543665 AGGCAGTAGTCCGTAGTAGAAG 58.456 50.000 0.00 0.00 0.00 2.85
399 400 3.054875 TGAGGCAGTAGTCCGTAGTAGAA 60.055 47.826 0.00 0.00 0.00 2.10
400 401 2.502947 TGAGGCAGTAGTCCGTAGTAGA 59.497 50.000 0.00 0.00 0.00 2.59
401 402 2.915349 TGAGGCAGTAGTCCGTAGTAG 58.085 52.381 0.00 0.00 0.00 2.57
402 403 3.572632 ATGAGGCAGTAGTCCGTAGTA 57.427 47.619 0.00 0.00 0.00 1.82
403 404 2.427453 CAATGAGGCAGTAGTCCGTAGT 59.573 50.000 0.00 0.00 0.00 2.73
404 405 2.799917 GCAATGAGGCAGTAGTCCGTAG 60.800 54.545 0.00 0.00 0.00 3.51
405 406 1.136305 GCAATGAGGCAGTAGTCCGTA 59.864 52.381 0.00 0.00 0.00 4.02
406 407 0.108138 GCAATGAGGCAGTAGTCCGT 60.108 55.000 0.00 0.00 0.00 4.69
407 408 0.811616 GGCAATGAGGCAGTAGTCCG 60.812 60.000 0.00 0.00 43.51 4.79
408 409 0.464554 GGGCAATGAGGCAGTAGTCC 60.465 60.000 0.00 0.00 46.44 3.85
409 410 0.253044 TGGGCAATGAGGCAGTAGTC 59.747 55.000 0.00 0.00 46.44 2.59
410 411 0.035056 GTGGGCAATGAGGCAGTAGT 60.035 55.000 0.00 0.00 46.44 2.73
411 412 0.254178 AGTGGGCAATGAGGCAGTAG 59.746 55.000 0.00 0.00 46.44 2.57
412 413 0.253044 GAGTGGGCAATGAGGCAGTA 59.747 55.000 0.00 0.00 46.44 2.74
413 414 1.001641 GAGTGGGCAATGAGGCAGT 60.002 57.895 0.00 0.00 46.44 4.40
414 415 0.543277 TAGAGTGGGCAATGAGGCAG 59.457 55.000 0.00 0.00 46.44 4.85
415 416 0.253044 GTAGAGTGGGCAATGAGGCA 59.747 55.000 0.00 0.00 46.44 4.75
416 417 0.464554 GGTAGAGTGGGCAATGAGGC 60.465 60.000 0.00 0.00 43.27 4.70
417 418 0.179073 CGGTAGAGTGGGCAATGAGG 60.179 60.000 0.00 0.00 0.00 3.86
418 419 0.179073 CCGGTAGAGTGGGCAATGAG 60.179 60.000 0.00 0.00 0.00 2.90
419 420 1.622607 CCCGGTAGAGTGGGCAATGA 61.623 60.000 0.00 0.00 38.90 2.57
420 421 1.153168 CCCGGTAGAGTGGGCAATG 60.153 63.158 0.00 0.00 38.90 2.82
421 422 3.320359 CCCGGTAGAGTGGGCAAT 58.680 61.111 0.00 0.00 38.90 3.56
426 427 1.955080 GATGTAGACCCGGTAGAGTGG 59.045 57.143 0.00 0.00 0.00 4.00
427 428 1.955080 GGATGTAGACCCGGTAGAGTG 59.045 57.143 0.00 0.00 0.00 3.51
428 429 1.567649 TGGATGTAGACCCGGTAGAGT 59.432 52.381 0.00 0.00 0.00 3.24
429 430 2.359981 TGGATGTAGACCCGGTAGAG 57.640 55.000 0.00 0.00 0.00 2.43
430 431 2.381911 GTTGGATGTAGACCCGGTAGA 58.618 52.381 0.00 0.00 0.00 2.59
431 432 1.411612 GGTTGGATGTAGACCCGGTAG 59.588 57.143 0.00 0.00 0.00 3.18
432 433 1.488390 GGTTGGATGTAGACCCGGTA 58.512 55.000 0.00 0.00 0.00 4.02
433 434 1.269703 GGGTTGGATGTAGACCCGGT 61.270 60.000 0.00 0.00 43.25 5.28
434 435 1.525442 GGGTTGGATGTAGACCCGG 59.475 63.158 0.00 0.00 43.25 5.73
437 438 1.751437 GCAAGGGTTGGATGTAGACC 58.249 55.000 0.00 0.00 0.00 3.85
438 439 1.369625 CGCAAGGGTTGGATGTAGAC 58.630 55.000 0.00 0.00 0.00 2.59
439 440 0.392461 GCGCAAGGGTTGGATGTAGA 60.392 55.000 0.30 0.00 38.28 2.59
440 441 1.376609 GGCGCAAGGGTTGGATGTAG 61.377 60.000 10.83 0.00 38.28 2.74
441 442 1.377987 GGCGCAAGGGTTGGATGTA 60.378 57.895 10.83 0.00 38.28 2.29
442 443 2.676471 GGCGCAAGGGTTGGATGT 60.676 61.111 10.83 0.00 38.28 3.06
443 444 2.361610 AGGCGCAAGGGTTGGATG 60.362 61.111 10.83 0.00 38.28 3.51
444 445 2.044946 GAGGCGCAAGGGTTGGAT 60.045 61.111 10.83 0.00 38.28 3.41
445 446 4.697756 CGAGGCGCAAGGGTTGGA 62.698 66.667 10.83 0.00 38.28 3.53
459 460 3.567579 ATTGGGTGGTGTGGGCGAG 62.568 63.158 0.00 0.00 0.00 5.03
460 461 3.575247 ATTGGGTGGTGTGGGCGA 61.575 61.111 0.00 0.00 0.00 5.54
461 462 3.372730 CATTGGGTGGTGTGGGCG 61.373 66.667 0.00 0.00 0.00 6.13
462 463 2.203625 ACATTGGGTGGTGTGGGC 60.204 61.111 0.00 0.00 0.00 5.36
463 464 3.776158 CACATTGGGTGGTGTGGG 58.224 61.111 0.00 0.00 44.04 4.61
514 515 5.163519 ACAAATTGTTTGAGTCACAAGAGGG 60.164 40.000 9.21 0.00 43.26 4.30
581 584 0.094046 CACGTCAAATCGCGGGTAAC 59.906 55.000 6.13 0.00 0.00 2.50
602 605 8.986847 CAACAGGAGCTCAGATATTTTAGTATG 58.013 37.037 17.19 0.00 0.00 2.39
604 607 8.079211 ACAACAGGAGCTCAGATATTTTAGTA 57.921 34.615 17.19 0.00 0.00 1.82
607 610 6.535150 CGAACAACAGGAGCTCAGATATTTTA 59.465 38.462 17.19 0.00 0.00 1.52
622 625 3.108144 CTGTTTTCTTGCGAACAACAGG 58.892 45.455 10.06 0.00 40.19 4.00
625 631 2.783832 GCTCTGTTTTCTTGCGAACAAC 59.216 45.455 0.00 0.00 35.54 3.32
636 642 4.322567 ACCAGATTCTCTGCTCTGTTTTC 58.677 43.478 0.00 0.00 42.98 2.29
637 643 4.363991 ACCAGATTCTCTGCTCTGTTTT 57.636 40.909 0.00 0.00 42.98 2.43
648 654 4.583871 ACAGGTCATGAAACCAGATTCTC 58.416 43.478 0.00 0.00 42.12 2.87
652 658 2.644299 TGGACAGGTCATGAAACCAGAT 59.356 45.455 0.00 0.00 42.12 2.90
656 662 2.568623 ACTGGACAGGTCATGAAACC 57.431 50.000 0.00 0.00 39.80 3.27
674 680 5.220135 CGCCGAATTTAATGGCTAACAAAAC 60.220 40.000 5.05 0.00 46.67 2.43
694 701 2.950433 TCTGTCTACTTTTTACCGCCG 58.050 47.619 0.00 0.00 0.00 6.46
808 818 3.158676 AGAGGACGCTATAATCCAGACC 58.841 50.000 0.00 0.00 37.47 3.85
819 829 1.610363 CTCCAGCATAGAGGACGCTA 58.390 55.000 0.00 0.00 33.82 4.26
916 926 2.360475 GACAAGTCTGGGCCCAGC 60.360 66.667 42.34 34.79 43.31 4.85
984 998 2.047939 GGACACGGTGGTAACGGG 60.048 66.667 13.48 0.00 41.32 5.28
1015 1029 1.462670 CAGAGAAAAACGGCAGAGAGC 59.537 52.381 0.00 0.00 44.65 4.09
1021 1035 0.108585 AGAGGCAGAGAAAAACGGCA 59.891 50.000 0.00 0.00 0.00 5.69
1045 1059 4.452733 GGGAGCGGGGAGTTCGTG 62.453 72.222 0.00 0.00 0.00 4.35
1119 1133 4.891727 ATCCACCATCGCGACGGC 62.892 66.667 23.04 0.00 0.00 5.68
1328 1342 2.786495 GGCGAGCTCCATCTCCGAA 61.786 63.158 8.47 0.00 0.00 4.30
1331 1345 4.292178 CGGGCGAGCTCCATCTCC 62.292 72.222 8.47 1.77 0.00 3.71
1427 1441 4.821589 GAGCGCCAGTCCGGGAAG 62.822 72.222 2.29 0.00 34.06 3.46
1745 1759 1.050988 ACGGGGAGGAGATGTCCATG 61.051 60.000 12.14 0.00 46.80 3.66
1907 1921 3.785859 GATGCGGTGGAGGCCTCA 61.786 66.667 33.29 17.15 0.00 3.86
1931 1945 2.813042 GAGCAGCAGCCTGACGAC 60.813 66.667 0.00 0.00 41.77 4.34
2063 2077 3.066190 TCGAACATCCCCGACGCT 61.066 61.111 0.00 0.00 0.00 5.07
2331 2345 3.728279 ATTAACCGCCGACGCCTCC 62.728 63.158 0.00 0.00 38.22 4.30
2332 2346 2.202837 ATTAACCGCCGACGCCTC 60.203 61.111 0.00 0.00 38.22 4.70
2333 2347 2.202837 GATTAACCGCCGACGCCT 60.203 61.111 0.00 0.00 38.22 5.52
2343 2357 8.088981 GGGGAAAAGAAAGAAGAAAGATTAACC 58.911 37.037 0.00 0.00 0.00 2.85
2386 2402 6.533819 AGTGTTGTTGTTTAATCGAATCGA 57.466 33.333 8.12 8.12 41.13 3.59
2387 2403 6.631238 ACAAGTGTTGTTGTTTAATCGAATCG 59.369 34.615 0.00 0.00 42.22 3.34
2388 2404 7.908193 ACAAGTGTTGTTGTTTAATCGAATC 57.092 32.000 0.00 0.00 42.22 2.52
2389 2405 9.393249 CATACAAGTGTTGTTGTTTAATCGAAT 57.607 29.630 0.00 0.00 42.22 3.34
2390 2406 8.399425 ACATACAAGTGTTGTTGTTTAATCGAA 58.601 29.630 0.00 0.00 42.22 3.71
2444 2461 2.514013 CGTACGCGAACATGGCCTC 61.514 63.158 15.93 0.00 41.33 4.70
2455 2472 3.017576 GCTTAATTTACTTGCGTACGCG 58.982 45.455 32.65 22.58 45.51 6.01
2456 2473 3.348309 GGCTTAATTTACTTGCGTACGC 58.652 45.455 32.49 32.49 42.35 4.42
2457 2474 3.061161 ACGGCTTAATTTACTTGCGTACG 59.939 43.478 11.84 11.84 0.00 3.67
2458 2475 4.143052 ACACGGCTTAATTTACTTGCGTAC 60.143 41.667 0.00 0.00 0.00 3.67
2482 2511 0.739462 ACGGTACATCATGCACGTGG 60.739 55.000 18.88 0.08 32.90 4.94
2490 2519 3.872696 TCTGCAATTGACGGTACATCAT 58.127 40.909 10.34 0.00 23.23 2.45
2500 2529 3.291585 CGTTGTGTTCTCTGCAATTGAC 58.708 45.455 10.34 1.02 0.00 3.18
2509 2538 1.071471 CTGGGGCGTTGTGTTCTCT 59.929 57.895 0.00 0.00 0.00 3.10
2510 2539 0.534203 TTCTGGGGCGTTGTGTTCTC 60.534 55.000 0.00 0.00 0.00 2.87
2515 2544 2.667171 CGTTAATTTCTGGGGCGTTGTG 60.667 50.000 0.00 0.00 0.00 3.33
2522 2551 3.081804 AGAACAGCGTTAATTTCTGGGG 58.918 45.455 6.55 0.00 32.42 4.96
2526 2555 4.312443 TCGGAAGAACAGCGTTAATTTCT 58.688 39.130 0.00 0.00 37.03 2.52
2547 2576 2.951690 AGGGTTGGATGGATCCCTC 58.048 57.895 9.90 9.10 46.22 4.30
2552 2581 2.557452 GGAACACAAGGGTTGGATGGAT 60.557 50.000 0.00 0.00 34.12 3.41
2553 2582 1.203001 GGAACACAAGGGTTGGATGGA 60.203 52.381 0.00 0.00 34.12 3.41
2554 2583 1.256812 GGAACACAAGGGTTGGATGG 58.743 55.000 0.00 0.00 34.12 3.51
2555 2584 1.256812 GGGAACACAAGGGTTGGATG 58.743 55.000 0.00 0.00 34.12 3.51
2580 2609 2.870411 GGAAAAAGATACCGTCCATCCG 59.130 50.000 0.00 0.00 0.00 4.18
2602 2641 0.726827 GTATCCACCACATGCACACG 59.273 55.000 0.00 0.00 0.00 4.49
2614 2653 2.289257 GCCCTAACGGTATGGTATCCAC 60.289 54.545 3.60 0.00 35.80 4.02
2618 2657 1.975680 CAGGCCCTAACGGTATGGTAT 59.024 52.381 0.00 0.00 0.00 2.73
2620 2659 1.342672 CCAGGCCCTAACGGTATGGT 61.343 60.000 0.00 0.00 35.62 3.55
2621 2660 1.450211 CCAGGCCCTAACGGTATGG 59.550 63.158 0.00 0.00 34.31 2.74
2622 2661 1.227853 GCCAGGCCCTAACGGTATG 60.228 63.158 0.00 0.00 0.00 2.39
2645 2689 7.148154 CGTGGTTGGTAAATGAATAAGATTCCA 60.148 37.037 0.00 0.00 0.00 3.53
2700 2744 2.086869 CCCATACCAGTGACTGCAAAG 58.913 52.381 7.16 0.00 0.00 2.77
2711 2755 8.603898 TTGTGGATACTATATACCCATACCAG 57.396 38.462 0.00 0.00 37.61 4.00
2713 2757 9.263446 TCTTTGTGGATACTATATACCCATACC 57.737 37.037 0.00 0.00 37.61 2.73
2716 2760 9.790297 ATCTCTTTGTGGATACTATATACCCAT 57.210 33.333 0.00 0.00 37.61 4.00
2737 2784 3.300388 TCGCAGGATCTGGTTAATCTCT 58.700 45.455 0.00 0.00 31.21 3.10
2768 2815 2.758979 GGATCATTGGATGGATGGATGC 59.241 50.000 0.00 0.00 32.67 3.91
2779 2826 1.065491 CCTCACGGTTGGATCATTGGA 60.065 52.381 0.00 0.00 0.00 3.53
2780 2827 1.382522 CCTCACGGTTGGATCATTGG 58.617 55.000 0.00 0.00 0.00 3.16
2781 2828 1.065491 TCCCTCACGGTTGGATCATTG 60.065 52.381 0.00 0.00 0.00 2.82
2782 2829 1.285280 TCCCTCACGGTTGGATCATT 58.715 50.000 0.00 0.00 0.00 2.57
2783 2830 1.511613 ATCCCTCACGGTTGGATCAT 58.488 50.000 0.00 0.00 33.61 2.45
2784 2831 3.006061 ATCCCTCACGGTTGGATCA 57.994 52.632 0.00 0.00 33.61 2.92
2796 2843 0.173708 AAGTTCTCGCGTGATCCCTC 59.826 55.000 12.14 1.53 0.00 4.30
2798 2845 1.135199 TGTAAGTTCTCGCGTGATCCC 60.135 52.381 12.14 3.56 0.00 3.85
2801 2848 1.816835 TCCTGTAAGTTCTCGCGTGAT 59.183 47.619 12.14 0.00 0.00 3.06
2802 2849 1.241165 TCCTGTAAGTTCTCGCGTGA 58.759 50.000 5.77 6.33 0.00 4.35
2803 2850 2.186076 GATCCTGTAAGTTCTCGCGTG 58.814 52.381 5.77 3.13 0.00 5.34
2804 2851 1.816835 TGATCCTGTAAGTTCTCGCGT 59.183 47.619 5.77 0.00 0.00 6.01
2805 2852 2.186076 GTGATCCTGTAAGTTCTCGCG 58.814 52.381 0.00 0.00 0.00 5.87
2806 2853 2.186076 CGTGATCCTGTAAGTTCTCGC 58.814 52.381 0.00 0.00 29.23 5.03
2807 2854 2.186076 GCGTGATCCTGTAAGTTCTCG 58.814 52.381 0.00 0.00 35.59 4.04
2808 2855 2.186076 CGCGTGATCCTGTAAGTTCTC 58.814 52.381 0.00 0.00 0.00 2.87
2810 2857 0.645868 GCGCGTGATCCTGTAAGTTC 59.354 55.000 8.43 0.00 0.00 3.01
2813 2860 1.202973 CGAGCGCGTGATCCTGTAAG 61.203 60.000 8.43 0.00 0.00 2.34
2832 2883 0.179207 GGTTAGCCGTTGTAAAGCGC 60.179 55.000 0.00 0.00 0.00 5.92
2833 2884 0.445043 GGGTTAGCCGTTGTAAAGCG 59.555 55.000 0.00 0.00 34.97 4.68
2854 2905 7.067094 GTTGGTCAACTGATGCTAATGCAAAT 61.067 38.462 6.59 0.00 43.99 2.32
2855 2906 5.793248 GTTGGTCAACTGATGCTAATGCAAA 60.793 40.000 6.59 0.00 43.99 3.68
2856 2907 4.321156 GTTGGTCAACTGATGCTAATGCAA 60.321 41.667 6.59 0.00 43.99 4.08
2857 2908 3.191162 GTTGGTCAACTGATGCTAATGCA 59.809 43.478 6.59 0.00 44.44 3.96
2858 2909 3.762779 GTTGGTCAACTGATGCTAATGC 58.237 45.455 6.59 0.00 38.25 3.56
2881 2932 1.810030 CGTAGCCCGAACTCTTGGC 60.810 63.158 0.00 0.00 45.70 4.52
2943 2994 1.818785 GAGGAGCATGCTGAGCACC 60.819 63.158 28.27 19.58 43.04 5.01
2947 2998 1.335882 TGGAGGAGGAGCATGCTGAG 61.336 60.000 28.27 0.00 36.27 3.35
2955 3006 0.034670 ATGCAACTTGGAGGAGGAGC 60.035 55.000 0.00 0.00 0.00 4.70
3005 3056 1.581912 GAGCGCACGATGCATGTTG 60.582 57.895 11.47 1.21 45.36 3.33
3009 3060 2.125391 ACTGAGCGCACGATGCAT 60.125 55.556 11.47 0.00 45.36 3.96
3022 3073 0.901114 TAGTTACCGCCAGCCACTGA 60.901 55.000 0.00 0.00 32.44 3.41
3023 3074 0.036765 TTAGTTACCGCCAGCCACTG 60.037 55.000 0.00 0.00 0.00 3.66
3045 3096 0.745845 CAGGGCGATTGCTTGCTACT 60.746 55.000 4.59 0.00 42.25 2.57
3046 3097 1.723870 CAGGGCGATTGCTTGCTAC 59.276 57.895 4.59 0.00 42.25 3.58
3065 3116 7.439356 CCCCTGCTTAAGAAAAGAAAAGAAAAG 59.561 37.037 6.67 0.00 0.00 2.27
3066 3117 7.272244 CCCCTGCTTAAGAAAAGAAAAGAAAA 58.728 34.615 6.67 0.00 0.00 2.29
3067 3118 6.183360 CCCCCTGCTTAAGAAAAGAAAAGAAA 60.183 38.462 6.67 0.00 0.00 2.52
3068 3119 5.304357 CCCCCTGCTTAAGAAAAGAAAAGAA 59.696 40.000 6.67 0.00 0.00 2.52
3069 3120 4.832823 CCCCCTGCTTAAGAAAAGAAAAGA 59.167 41.667 6.67 0.00 0.00 2.52
3090 3141 0.981277 TCTCCCGATGTCCCTTTCCC 60.981 60.000 0.00 0.00 0.00 3.97
3160 3239 3.737172 CCTTTTGGGGCGAGCACG 61.737 66.667 0.00 0.00 38.08 5.34
3161 3240 1.866853 CTTCCTTTTGGGGCGAGCAC 61.867 60.000 0.00 0.00 40.87 4.40
3162 3241 1.603455 CTTCCTTTTGGGGCGAGCA 60.603 57.895 0.00 0.00 40.87 4.26
3163 3242 2.343426 CCTTCCTTTTGGGGCGAGC 61.343 63.158 0.00 0.00 40.87 5.03
3164 3243 2.343426 GCCTTCCTTTTGGGGCGAG 61.343 63.158 0.00 0.00 37.22 5.03
3165 3244 2.282887 GCCTTCCTTTTGGGGCGA 60.283 61.111 0.00 0.00 37.22 5.54
3210 3289 3.376078 AGCCATGCAAGTTGCCCG 61.376 61.111 24.59 15.01 44.23 6.13
3321 3413 0.602638 CCAGCCTTGTTCACGTAGCA 60.603 55.000 0.00 0.00 0.00 3.49
3322 3414 1.912371 GCCAGCCTTGTTCACGTAGC 61.912 60.000 0.00 0.00 0.00 3.58
3323 3415 1.626654 CGCCAGCCTTGTTCACGTAG 61.627 60.000 0.00 0.00 0.00 3.51
3403 3499 0.861837 GCACAGAACTCAAGTGACCG 59.138 55.000 0.00 0.00 35.33 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.