Multiple sequence alignment - TraesCS5A01G236700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G236700 chr5A 100.000 4155 0 0 1 4155 452121848 452126002 0.000000e+00 7673.0
1 TraesCS5A01G236700 chr5A 83.673 147 24 0 3624 3770 227026877 227027023 5.600000e-29 139.0
2 TraesCS5A01G236700 chr5D 91.693 2528 125 34 676 3155 351802058 351804548 0.000000e+00 3426.0
3 TraesCS5A01G236700 chr5D 77.346 746 130 18 3249 3992 198949666 198950374 5.000000e-109 405.0
4 TraesCS5A01G236700 chr5B 94.508 1402 62 10 1662 3050 417339756 417338357 0.000000e+00 2148.0
5 TraesCS5A01G236700 chr5B 94.858 914 35 7 505 1413 417343618 417342712 0.000000e+00 1417.0
6 TraesCS5A01G236700 chr5B 92.593 216 12 2 1 216 417344524 417344313 1.450000e-79 307.0
7 TraesCS5A01G236700 chr5B 90.041 241 16 2 1414 1652 417340081 417339847 5.220000e-79 305.0
8 TraesCS5A01G236700 chr5B 83.706 313 43 7 3644 3952 209859544 209859236 5.260000e-74 289.0
9 TraesCS5A01G236700 chr5B 90.476 210 18 2 229 437 417344329 417344121 4.090000e-70 276.0
10 TraesCS5A01G236700 chr5B 97.917 48 0 1 431 477 270441004 270440957 9.570000e-12 82.4
11 TraesCS5A01G236700 chr5B 92.727 55 2 2 424 477 480252598 480252651 1.240000e-10 78.7
12 TraesCS5A01G236700 chr5B 87.879 66 2 5 417 477 227830937 227831001 5.760000e-09 73.1
13 TraesCS5A01G236700 chr7D 77.241 725 142 18 3280 3993 622541513 622542225 1.800000e-108 403.0
14 TraesCS5A01G236700 chr7D 79.926 538 84 15 3479 4012 509202653 509202136 1.410000e-99 374.0
15 TraesCS5A01G236700 chr1D 75.197 762 161 16 3252 4012 59303710 59302976 6.660000e-88 335.0
16 TraesCS5A01G236700 chr7A 78.544 522 89 15 3475 3992 579735047 579734545 5.180000e-84 322.0
17 TraesCS5A01G236700 chr3D 79.943 349 54 12 3647 3992 14090467 14090802 4.150000e-60 243.0
18 TraesCS5A01G236700 chr3D 97.059 34 0 1 3123 3155 8263642 8263675 5.800000e-04 56.5
19 TraesCS5A01G236700 chr3A 82.326 215 35 3 3782 3995 661665899 661665687 2.550000e-42 183.0
20 TraesCS5A01G236700 chr3A 89.831 59 4 2 421 478 41180753 41180810 1.600000e-09 75.0
21 TraesCS5A01G236700 chr3A 100.000 31 0 0 4017 4047 661785560 661785530 1.610000e-04 58.4
22 TraesCS5A01G236700 chr6D 88.889 144 14 2 2169 2310 411734184 411734041 4.270000e-40 176.0
23 TraesCS5A01G236700 chr6D 78.528 163 32 3 3478 3639 346243393 346243233 2.040000e-18 104.0
24 TraesCS5A01G236700 chr6D 94.340 53 1 2 427 477 457728155 457728103 3.440000e-11 80.5
25 TraesCS5A01G236700 chr6D 97.619 42 1 0 2207 2248 411733883 411733842 5.760000e-09 73.1
26 TraesCS5A01G236700 chr2B 82.822 163 27 1 3644 3806 644843188 644843349 1.200000e-30 145.0
27 TraesCS5A01G236700 chr2A 97.959 49 0 1 430 477 775020187 775020235 2.660000e-12 84.2
28 TraesCS5A01G236700 chr6B 92.857 56 3 1 423 477 239602833 239602778 3.440000e-11 80.5
29 TraesCS5A01G236700 chr2D 92.727 55 2 2 424 477 166808221 166808274 1.240000e-10 78.7
30 TraesCS5A01G236700 chr7B 88.710 62 3 4 418 477 512653831 512653772 5.760000e-09 73.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G236700 chr5A 452121848 452126002 4154 False 7673.0 7673 100.0000 1 4155 1 chr5A.!!$F2 4154
1 TraesCS5A01G236700 chr5D 351802058 351804548 2490 False 3426.0 3426 91.6930 676 3155 1 chr5D.!!$F2 2479
2 TraesCS5A01G236700 chr5D 198949666 198950374 708 False 405.0 405 77.3460 3249 3992 1 chr5D.!!$F1 743
3 TraesCS5A01G236700 chr5B 417338357 417344524 6167 True 890.6 2148 92.4952 1 3050 5 chr5B.!!$R3 3049
4 TraesCS5A01G236700 chr7D 622541513 622542225 712 False 403.0 403 77.2410 3280 3993 1 chr7D.!!$F1 713
5 TraesCS5A01G236700 chr7D 509202136 509202653 517 True 374.0 374 79.9260 3479 4012 1 chr7D.!!$R1 533
6 TraesCS5A01G236700 chr1D 59302976 59303710 734 True 335.0 335 75.1970 3252 4012 1 chr1D.!!$R1 760
7 TraesCS5A01G236700 chr7A 579734545 579735047 502 True 322.0 322 78.5440 3475 3992 1 chr7A.!!$R1 517

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
929 1442 0.179225 CCGAACGGTCAAAAGATGCG 60.179 55.0 0.0 0.0 0.0 4.73 F
1632 4779 0.389166 CCGAGCAGACAGTTCAGACC 60.389 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2541 5770 0.107508 GTTCAGATGCTGCAGGGCTA 60.108 55.0 17.12 0.0 0.00 3.93 R
3209 6465 0.108662 GCATGTTTAGTTGCCCCAGC 60.109 55.0 0.00 0.0 40.48 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
75 76 1.952296 ACTGAGCAAGCAAGAGGTTTG 59.048 47.619 0.00 0.00 40.33 2.93
80 81 1.136891 GCAAGCAAGAGGTTTGTTGGT 59.863 47.619 0.00 0.00 39.64 3.67
81 82 2.418609 GCAAGCAAGAGGTTTGTTGGTT 60.419 45.455 0.00 0.00 45.61 3.67
108 109 7.417797 GGCCCATGTGAATGTTATAGAAACAAT 60.418 37.037 0.00 0.00 33.42 2.71
140 141 2.991250 ACATGGAATAGGCTCACACAC 58.009 47.619 0.00 0.00 0.00 3.82
176 177 2.682856 CACTAAGGCCGCAATGTGTATT 59.317 45.455 0.00 0.00 0.00 1.89
177 178 2.682856 ACTAAGGCCGCAATGTGTATTG 59.317 45.455 0.00 0.00 45.17 1.90
179 180 1.832883 AGGCCGCAATGTGTATTGAA 58.167 45.000 0.00 0.00 45.21 2.69
180 181 1.472480 AGGCCGCAATGTGTATTGAAC 59.528 47.619 0.00 0.00 45.21 3.18
181 182 1.201181 GGCCGCAATGTGTATTGAACA 59.799 47.619 4.33 0.00 45.21 3.18
195 196 3.584406 TTGAACACCACAACCACAAAG 57.416 42.857 0.00 0.00 0.00 2.77
207 208 2.858745 ACCACAAAGCCGAACAACTAT 58.141 42.857 0.00 0.00 0.00 2.12
216 217 7.390718 ACAAAGCCGAACAACTATATTCTCTTT 59.609 33.333 0.00 0.00 31.40 2.52
218 219 7.923414 AGCCGAACAACTATATTCTCTTTTT 57.077 32.000 0.00 0.00 0.00 1.94
241 242 6.380095 TTTTGCGGTTAACAACTACATTCT 57.620 33.333 8.10 0.00 0.00 2.40
242 243 5.600908 TTGCGGTTAACAACTACATTCTC 57.399 39.130 8.10 0.00 0.00 2.87
243 244 4.890088 TGCGGTTAACAACTACATTCTCT 58.110 39.130 8.10 0.00 0.00 3.10
244 245 5.302360 TGCGGTTAACAACTACATTCTCTT 58.698 37.500 8.10 0.00 0.00 2.85
245 246 5.407387 TGCGGTTAACAACTACATTCTCTTC 59.593 40.000 8.10 0.00 0.00 2.87
246 247 5.638234 GCGGTTAACAACTACATTCTCTTCT 59.362 40.000 8.10 0.00 0.00 2.85
247 248 6.183360 GCGGTTAACAACTACATTCTCTTCTC 60.183 42.308 8.10 0.00 0.00 2.87
248 249 6.866770 CGGTTAACAACTACATTCTCTTCTCA 59.133 38.462 8.10 0.00 0.00 3.27
281 282 3.118454 CTAGCGGCACCCAACACG 61.118 66.667 1.45 0.00 0.00 4.49
283 284 2.852495 CTAGCGGCACCCAACACGAT 62.852 60.000 1.45 0.00 0.00 3.73
292 293 0.660005 CCCAACACGATGTGCAAACG 60.660 55.000 0.00 0.00 36.98 3.60
293 294 1.268113 CCAACACGATGTGCAAACGC 61.268 55.000 8.04 0.00 36.98 4.84
334 335 8.360132 GCGAACATAATTAAAACCTAACAAACG 58.640 33.333 0.00 0.00 0.00 3.60
412 414 7.755822 AGACTTAATCTCATGAGTAAACGACAC 59.244 37.037 21.92 7.93 33.23 3.67
444 446 9.548631 AGTGCATGTATTTAGTATATACTCCCT 57.451 33.333 18.68 7.33 37.73 4.20
445 447 9.804758 GTGCATGTATTTAGTATATACTCCCTC 57.195 37.037 18.68 8.01 37.73 4.30
446 448 8.978472 TGCATGTATTTAGTATATACTCCCTCC 58.022 37.037 18.68 6.73 37.73 4.30
447 449 8.136165 GCATGTATTTAGTATATACTCCCTCCG 58.864 40.741 18.68 4.19 37.73 4.63
448 450 9.186837 CATGTATTTAGTATATACTCCCTCCGT 57.813 37.037 18.68 4.99 37.73 4.69
449 451 9.765295 ATGTATTTAGTATATACTCCCTCCGTT 57.235 33.333 18.68 0.00 37.73 4.44
450 452 9.236006 TGTATTTAGTATATACTCCCTCCGTTC 57.764 37.037 18.68 3.78 37.73 3.95
451 453 7.715266 ATTTAGTATATACTCCCTCCGTTCC 57.285 40.000 18.68 0.00 37.73 3.62
452 454 4.736611 AGTATATACTCCCTCCGTTCCA 57.263 45.455 9.71 0.00 0.00 3.53
453 455 5.070823 AGTATATACTCCCTCCGTTCCAA 57.929 43.478 9.71 0.00 0.00 3.53
454 456 5.461327 AGTATATACTCCCTCCGTTCCAAA 58.539 41.667 9.71 0.00 0.00 3.28
455 457 5.901276 AGTATATACTCCCTCCGTTCCAAAA 59.099 40.000 9.71 0.00 0.00 2.44
456 458 5.906772 ATATACTCCCTCCGTTCCAAAAT 57.093 39.130 0.00 0.00 0.00 1.82
457 459 7.731688 AGTATATACTCCCTCCGTTCCAAAATA 59.268 37.037 9.71 0.00 0.00 1.40
458 460 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
459 461 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
460 462 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
461 463 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
462 464 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
463 465 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
464 466 4.384208 CCCTCCGTTCCAAAATAGATGACT 60.384 45.833 0.00 0.00 0.00 3.41
465 467 4.811557 CCTCCGTTCCAAAATAGATGACTC 59.188 45.833 0.00 0.00 0.00 3.36
466 468 5.414789 TCCGTTCCAAAATAGATGACTCA 57.585 39.130 0.00 0.00 0.00 3.41
467 469 5.800296 TCCGTTCCAAAATAGATGACTCAA 58.200 37.500 0.00 0.00 0.00 3.02
468 470 5.642063 TCCGTTCCAAAATAGATGACTCAAC 59.358 40.000 0.00 0.00 0.00 3.18
469 471 5.643777 CCGTTCCAAAATAGATGACTCAACT 59.356 40.000 0.00 0.00 0.00 3.16
470 472 6.149474 CCGTTCCAAAATAGATGACTCAACTT 59.851 38.462 0.00 0.00 0.00 2.66
471 473 7.017645 CGTTCCAAAATAGATGACTCAACTTG 58.982 38.462 0.00 0.00 0.00 3.16
472 474 7.307989 CGTTCCAAAATAGATGACTCAACTTGT 60.308 37.037 0.00 0.00 0.00 3.16
473 475 8.999431 GTTCCAAAATAGATGACTCAACTTGTA 58.001 33.333 0.00 0.00 0.00 2.41
474 476 8.547967 TCCAAAATAGATGACTCAACTTGTAC 57.452 34.615 0.00 0.00 0.00 2.90
475 477 8.375506 TCCAAAATAGATGACTCAACTTGTACT 58.624 33.333 0.00 0.00 0.00 2.73
476 478 9.653287 CCAAAATAGATGACTCAACTTGTACTA 57.347 33.333 0.00 0.00 0.00 1.82
481 483 7.633193 AGATGACTCAACTTGTACTAGTAGG 57.367 40.000 10.43 6.56 0.00 3.18
482 484 7.403671 AGATGACTCAACTTGTACTAGTAGGA 58.596 38.462 10.43 10.15 0.00 2.94
483 485 7.554835 AGATGACTCAACTTGTACTAGTAGGAG 59.445 40.741 24.22 24.22 36.51 3.69
484 486 6.540995 TGACTCAACTTGTACTAGTAGGAGT 58.459 40.000 28.08 28.08 41.60 3.85
499 501 8.524487 ACTAGTAGGAGTAAGAAACAACATGAG 58.476 37.037 0.00 0.00 0.00 2.90
500 502 6.166982 AGTAGGAGTAAGAAACAACATGAGC 58.833 40.000 0.00 0.00 0.00 4.26
502 504 4.999950 AGGAGTAAGAAACAACATGAGCAG 59.000 41.667 0.00 0.00 0.00 4.24
503 505 4.378874 GGAGTAAGAAACAACATGAGCAGC 60.379 45.833 0.00 0.00 0.00 5.25
545 1029 3.093278 CGAAGCATCGCCCTGTTC 58.907 61.111 0.00 0.00 42.96 3.18
551 1035 0.674895 GCATCGCCCTGTTCTCTGTT 60.675 55.000 0.00 0.00 0.00 3.16
554 1038 0.242825 TCGCCCTGTTCTCTGTTACG 59.757 55.000 0.00 0.00 0.00 3.18
623 1107 5.639757 CATAAATTTCACGTGATGGAAGCA 58.360 37.500 20.80 0.00 0.00 3.91
788 1272 4.880120 TCTAGAGAGCTTTGATTTGGCATG 59.120 41.667 0.00 0.00 0.00 4.06
848 1359 0.693049 AGCGGATCAAAGAACCCACT 59.307 50.000 0.00 0.00 0.00 4.00
929 1442 0.179225 CCGAACGGTCAAAAGATGCG 60.179 55.000 0.00 0.00 0.00 4.73
983 1496 3.463944 CTTCTCCGTATAAAATGGCGGT 58.536 45.455 0.00 0.00 44.07 5.68
1005 1521 4.181010 CACGGCCAGCCCAGCTAT 62.181 66.667 2.24 0.00 36.40 2.97
1006 1522 3.866582 ACGGCCAGCCCAGCTATC 61.867 66.667 2.24 0.00 36.40 2.08
1007 1523 4.632974 CGGCCAGCCCAGCTATCC 62.633 72.222 2.24 0.00 36.40 2.59
1008 1524 3.174265 GGCCAGCCCAGCTATCCT 61.174 66.667 0.00 0.00 36.40 3.24
1031 1547 4.715523 TCCAAGCGGCCGGGAAAG 62.716 66.667 29.38 0.00 0.00 2.62
1048 1564 2.202810 GCACGGAGAGCTAGCACC 60.203 66.667 18.83 15.48 41.95 5.01
1049 1565 3.006756 GCACGGAGAGCTAGCACCA 62.007 63.158 18.83 0.00 41.95 4.17
1050 1566 1.140589 CACGGAGAGCTAGCACCAG 59.859 63.158 18.83 14.31 0.00 4.00
1051 1567 2.105930 CGGAGAGCTAGCACCAGC 59.894 66.667 18.83 3.18 42.12 4.85
1096 1613 3.206150 AGCAAACTGATCGTGACACTTT 58.794 40.909 3.68 0.00 0.00 2.66
1099 1616 4.766007 CAAACTGATCGTGACACTTTCAG 58.234 43.478 22.90 22.90 39.70 3.02
1100 1617 3.735237 ACTGATCGTGACACTTTCAGT 57.265 42.857 23.83 23.83 41.53 3.41
1101 1618 4.848562 ACTGATCGTGACACTTTCAGTA 57.151 40.909 26.24 2.43 43.77 2.74
1387 1904 1.060698 GGTACGCAAAGAATCGCACTC 59.939 52.381 0.00 0.00 0.00 3.51
1437 4584 2.559698 TTTGCTTCTTGGGTCGATCA 57.440 45.000 0.00 0.00 0.00 2.92
1601 4748 7.040686 GGAGTGCAAACTAACAAGAGGAAAATA 60.041 37.037 0.00 0.00 0.00 1.40
1632 4779 0.389166 CCGAGCAGACAGTTCAGACC 60.389 60.000 0.00 0.00 0.00 3.85
1644 4791 2.047844 CAGACCACGCCTGACCAG 60.048 66.667 0.00 0.00 33.65 4.00
1646 4793 2.048127 GACCACGCCTGACCAGAC 60.048 66.667 0.00 0.00 0.00 3.51
1655 4802 0.668706 CCTGACCAGACTTCTGTGCG 60.669 60.000 5.53 0.00 42.27 5.34
1674 4902 1.001815 CGGCGGCCATTATTTCGATTT 60.002 47.619 20.71 0.00 0.00 2.17
1676 4904 2.034053 GGCGGCCATTATTTCGATTTCA 59.966 45.455 15.62 0.00 0.00 2.69
1683 4911 7.301054 GGCCATTATTTCGATTTCAGATACTG 58.699 38.462 0.00 0.00 0.00 2.74
1695 4923 3.214328 TCAGATACTGATACAGCAGCGA 58.786 45.455 0.00 0.00 39.51 4.93
1817 5045 3.735725 CCCACGTTCCTGGGGTAT 58.264 61.111 0.76 0.00 46.76 2.73
2125 5353 7.864686 TCTTCCTTCGTAATGCATATGATTTG 58.135 34.615 6.97 1.40 29.71 2.32
2138 5366 5.058856 GCATATGATTTGCATTGATCGAACG 59.941 40.000 6.97 0.00 39.90 3.95
2143 5371 2.834618 GCATTGATCGAACGGGGGC 61.835 63.158 0.00 0.00 0.00 5.80
2148 5376 3.843117 GATCGAACGGGGGCGCTAG 62.843 68.421 7.64 0.00 0.00 3.42
2156 5384 1.523938 GGGGGCGCTAGCTAAACTG 60.524 63.158 13.93 0.00 44.37 3.16
2168 5396 2.880890 AGCTAAACTGGTGTTCTGCTTG 59.119 45.455 0.00 0.00 39.64 4.01
2231 5460 4.381718 GGCGACAGATTCCTTGTAAGTACT 60.382 45.833 0.00 0.00 0.00 2.73
2233 5462 5.742926 GCGACAGATTCCTTGTAAGTACTAC 59.257 44.000 0.00 0.00 0.00 2.73
2234 5463 6.404513 GCGACAGATTCCTTGTAAGTACTACT 60.405 42.308 0.00 0.00 0.00 2.57
2235 5464 7.188157 CGACAGATTCCTTGTAAGTACTACTC 58.812 42.308 0.00 0.00 0.00 2.59
2256 5485 6.276847 ACTCCTATATGCTTTCTTCTGTTCG 58.723 40.000 0.00 0.00 0.00 3.95
2307 5536 4.216472 GGTTGACTGGATTTTCTGAACCTC 59.784 45.833 0.00 0.00 30.91 3.85
2386 5615 3.797353 CACCTCATCCCCACCCCG 61.797 72.222 0.00 0.00 0.00 5.73
2410 5639 2.266627 GCAGTGCAGCAAGCCTCTT 61.267 57.895 11.09 0.00 44.83 2.85
2558 5787 0.108019 CATAGCCCTGCAGCATCTGA 59.892 55.000 8.66 0.00 32.44 3.27
2559 5788 0.841961 ATAGCCCTGCAGCATCTGAA 59.158 50.000 8.66 0.00 32.44 3.02
2570 5812 3.251729 GCAGCATCTGAACTGAACTGAAA 59.748 43.478 13.42 0.00 35.90 2.69
2588 5830 2.438868 AATCCGTTTGCTCTTTTGCC 57.561 45.000 0.00 0.00 0.00 4.52
2595 5837 3.309410 CGTTTGCTCTTTTGCCAAAATGT 59.691 39.130 2.58 0.00 0.00 2.71
2605 5847 4.333913 TTGCCAAAATGTGTGTGCTTAT 57.666 36.364 0.00 0.00 0.00 1.73
2670 5912 4.373116 TGGGGACTCTTCACGCGC 62.373 66.667 5.73 0.00 0.00 6.86
2776 6018 7.913789 TGGACTGTGAGTATTTTACCTACATT 58.086 34.615 0.00 0.00 0.00 2.71
2802 6044 7.959689 TTATGGTTTGTGATTTTCATTGGTG 57.040 32.000 0.00 0.00 0.00 4.17
2832 6075 6.729690 TTTGGGAGAATTCTGAAACAATGT 57.270 33.333 14.00 0.00 0.00 2.71
2833 6076 5.964958 TGGGAGAATTCTGAAACAATGTC 57.035 39.130 14.00 0.00 0.00 3.06
2835 6078 6.070656 TGGGAGAATTCTGAAACAATGTCTT 58.929 36.000 14.00 0.00 0.00 3.01
2871 6114 2.743718 CGGTGGAACTCCTGCTGT 59.256 61.111 0.00 0.00 40.32 4.40
2929 6172 6.239036 CCTTTCCGGAACTTCAAGAGAAAAAT 60.239 38.462 18.64 0.00 30.85 1.82
2931 6174 7.996098 TTCCGGAACTTCAAGAGAAAAATAT 57.004 32.000 14.35 0.00 32.35 1.28
2932 6175 7.377766 TCCGGAACTTCAAGAGAAAAATATG 57.622 36.000 0.00 0.00 32.35 1.78
2963 6210 6.775939 ATTGACATCGCATAATCAGTAGTG 57.224 37.500 0.00 0.00 0.00 2.74
2972 6219 5.698089 CGCATAATCAGTAGTGGATTGATGT 59.302 40.000 0.00 0.00 34.88 3.06
2990 6237 6.055231 TGATGTTTGTAACAGTTTTCCTCG 57.945 37.500 0.00 0.00 45.95 4.63
3033 6280 8.279970 ACCGATTGATGAAATTTGTCATTAGA 57.720 30.769 0.00 0.00 38.38 2.10
3039 6286 9.859427 TTGATGAAATTTGTCATTAGATTGGTC 57.141 29.630 0.00 0.00 38.38 4.02
3071 6326 7.412672 GGTTCCAAACAATAGTTACTTAGCGAG 60.413 40.741 0.00 0.00 36.84 5.03
3076 6331 8.587950 CAAACAATAGTTACTTAGCGAGAAGAG 58.412 37.037 3.98 0.00 36.84 2.85
3094 6349 2.604046 AGTGGTTCACAGTCACACTC 57.396 50.000 0.78 0.00 37.86 3.51
3097 6352 1.686587 TGGTTCACAGTCACACTCGAT 59.313 47.619 0.00 0.00 0.00 3.59
3107 6362 2.673368 GTCACACTCGATGGAACCATTC 59.327 50.000 7.79 1.45 36.70 2.67
3120 6375 4.342665 TGGAACCATTCAAAGTTTGTACCC 59.657 41.667 15.08 8.59 0.00 3.69
3121 6376 4.342665 GGAACCATTCAAAGTTTGTACCCA 59.657 41.667 15.08 0.00 0.00 4.51
3138 6394 3.551846 ACCCATCAAAACAGTCTTTCGT 58.448 40.909 0.00 0.00 0.00 3.85
3140 6396 3.058224 CCCATCAAAACAGTCTTTCGTCC 60.058 47.826 0.00 0.00 0.00 4.79
3150 6406 4.178540 CAGTCTTTCGTCCCGCTTTATAA 58.821 43.478 0.00 0.00 0.00 0.98
3151 6407 4.809426 CAGTCTTTCGTCCCGCTTTATAAT 59.191 41.667 0.00 0.00 0.00 1.28
3152 6408 5.981315 CAGTCTTTCGTCCCGCTTTATAATA 59.019 40.000 0.00 0.00 0.00 0.98
3156 6412 8.340443 GTCTTTCGTCCCGCTTTATAATAAAAT 58.660 33.333 0.00 0.00 0.00 1.82
3157 6413 9.545105 TCTTTCGTCCCGCTTTATAATAAAATA 57.455 29.630 0.00 0.00 0.00 1.40
3161 6417 9.491675 TCGTCCCGCTTTATAATAAAATAATCA 57.508 29.630 0.00 0.00 0.00 2.57
3176 6432 6.500684 AAATAATCATCATGTCCATACGGC 57.499 37.500 0.00 0.00 0.00 5.68
3177 6433 3.490439 AATCATCATGTCCATACGGCA 57.510 42.857 0.00 0.00 0.00 5.69
3178 6434 2.998316 TCATCATGTCCATACGGCAA 57.002 45.000 0.00 0.00 0.00 4.52
3179 6435 2.837498 TCATCATGTCCATACGGCAAG 58.163 47.619 0.00 0.00 0.00 4.01
3180 6436 2.170397 TCATCATGTCCATACGGCAAGT 59.830 45.455 0.00 0.00 0.00 3.16
3181 6437 2.779755 TCATGTCCATACGGCAAGTT 57.220 45.000 0.00 0.00 0.00 2.66
3182 6438 3.066291 TCATGTCCATACGGCAAGTTT 57.934 42.857 0.00 0.00 0.00 2.66
3183 6439 4.209307 TCATGTCCATACGGCAAGTTTA 57.791 40.909 0.00 0.00 0.00 2.01
3184 6440 4.580868 TCATGTCCATACGGCAAGTTTAA 58.419 39.130 0.00 0.00 0.00 1.52
3185 6441 4.634004 TCATGTCCATACGGCAAGTTTAAG 59.366 41.667 0.00 0.00 0.00 1.85
3186 6442 3.340034 TGTCCATACGGCAAGTTTAAGG 58.660 45.455 0.00 0.00 0.00 2.69
3187 6443 2.096980 GTCCATACGGCAAGTTTAAGGC 59.903 50.000 0.00 0.00 0.00 4.35
3188 6444 2.088423 CCATACGGCAAGTTTAAGGCA 58.912 47.619 0.00 0.00 0.00 4.75
3189 6445 2.490115 CCATACGGCAAGTTTAAGGCAA 59.510 45.455 0.00 0.00 0.00 4.52
3190 6446 3.427503 CCATACGGCAAGTTTAAGGCAAG 60.428 47.826 0.00 0.00 0.00 4.01
3191 6447 0.313987 ACGGCAAGTTTAAGGCAAGC 59.686 50.000 0.00 0.00 0.00 4.01
3192 6448 0.388520 CGGCAAGTTTAAGGCAAGCC 60.389 55.000 2.02 2.02 37.32 4.35
3193 6449 0.678950 GGCAAGTTTAAGGCAAGCCA 59.321 50.000 14.40 0.00 40.29 4.75
3194 6450 1.337167 GGCAAGTTTAAGGCAAGCCAG 60.337 52.381 14.40 0.00 40.29 4.85
3195 6451 1.341209 GCAAGTTTAAGGCAAGCCAGT 59.659 47.619 14.40 3.16 38.92 4.00
3196 6452 2.556622 GCAAGTTTAAGGCAAGCCAGTA 59.443 45.455 14.40 2.13 38.92 2.74
3197 6453 3.611766 GCAAGTTTAAGGCAAGCCAGTAC 60.612 47.826 14.40 5.79 38.92 2.73
3198 6454 3.502123 AGTTTAAGGCAAGCCAGTACA 57.498 42.857 14.40 0.00 38.92 2.90
3199 6455 3.827722 AGTTTAAGGCAAGCCAGTACAA 58.172 40.909 14.40 0.00 38.92 2.41
3200 6456 4.211920 AGTTTAAGGCAAGCCAGTACAAA 58.788 39.130 14.40 3.13 38.92 2.83
3201 6457 4.647399 AGTTTAAGGCAAGCCAGTACAAAA 59.353 37.500 14.40 1.81 38.92 2.44
3202 6458 5.304357 AGTTTAAGGCAAGCCAGTACAAAAT 59.696 36.000 14.40 2.56 38.92 1.82
3203 6459 6.492087 AGTTTAAGGCAAGCCAGTACAAAATA 59.508 34.615 14.40 0.00 38.92 1.40
3204 6460 6.902771 TTAAGGCAAGCCAGTACAAAATAA 57.097 33.333 14.40 0.00 38.92 1.40
3205 6461 5.391312 AAGGCAAGCCAGTACAAAATAAG 57.609 39.130 14.40 0.00 38.92 1.73
3206 6462 3.193479 AGGCAAGCCAGTACAAAATAAGC 59.807 43.478 14.40 0.00 38.92 3.09
3207 6463 3.511699 GCAAGCCAGTACAAAATAAGCC 58.488 45.455 0.00 0.00 0.00 4.35
3208 6464 3.193479 GCAAGCCAGTACAAAATAAGCCT 59.807 43.478 0.00 0.00 0.00 4.58
3209 6465 4.737054 CAAGCCAGTACAAAATAAGCCTG 58.263 43.478 0.00 0.00 0.00 4.85
3210 6466 2.755103 AGCCAGTACAAAATAAGCCTGC 59.245 45.455 0.00 0.00 0.00 4.85
3211 6467 2.755103 GCCAGTACAAAATAAGCCTGCT 59.245 45.455 0.00 0.00 0.00 4.24
3212 6468 3.428045 GCCAGTACAAAATAAGCCTGCTG 60.428 47.826 0.00 0.00 0.00 4.41
3213 6469 3.129287 CCAGTACAAAATAAGCCTGCTGG 59.871 47.826 5.03 5.03 35.64 4.85
3214 6470 3.129287 CAGTACAAAATAAGCCTGCTGGG 59.871 47.826 12.06 1.66 38.36 4.45
3215 6471 1.560505 ACAAAATAAGCCTGCTGGGG 58.439 50.000 12.06 0.00 35.12 4.96
3226 6482 3.763931 TGCTGGGGCAACTAAACAT 57.236 47.368 0.00 0.00 46.36 2.71
3227 6483 1.255882 TGCTGGGGCAACTAAACATG 58.744 50.000 0.00 0.00 46.36 3.21
3228 6484 0.108662 GCTGGGGCAACTAAACATGC 60.109 55.000 0.00 0.00 38.54 4.06
3229 6485 1.255882 CTGGGGCAACTAAACATGCA 58.744 50.000 0.00 0.00 0.00 3.96
3230 6486 1.826720 CTGGGGCAACTAAACATGCAT 59.173 47.619 0.00 0.00 0.00 3.96
3231 6487 2.234414 CTGGGGCAACTAAACATGCATT 59.766 45.455 0.00 0.00 0.00 3.56
3232 6488 3.435275 TGGGGCAACTAAACATGCATTA 58.565 40.909 0.00 0.00 0.00 1.90
3233 6489 3.834813 TGGGGCAACTAAACATGCATTAA 59.165 39.130 0.00 0.00 0.00 1.40
3234 6490 4.081752 TGGGGCAACTAAACATGCATTAAG 60.082 41.667 0.00 0.00 0.00 1.85
3235 6491 4.159506 GGGGCAACTAAACATGCATTAAGA 59.840 41.667 0.00 0.00 0.00 2.10
3236 6492 5.337169 GGGGCAACTAAACATGCATTAAGAA 60.337 40.000 0.00 0.00 0.00 2.52
3237 6493 6.340522 GGGCAACTAAACATGCATTAAGAAT 58.659 36.000 0.00 0.00 0.00 2.40
3238 6494 7.417342 GGGGCAACTAAACATGCATTAAGAATA 60.417 37.037 0.00 0.00 0.00 1.75
3239 6495 7.978975 GGGCAACTAAACATGCATTAAGAATAA 59.021 33.333 0.00 0.00 0.00 1.40
3240 6496 9.364989 GGCAACTAAACATGCATTAAGAATAAA 57.635 29.630 0.00 0.00 0.00 1.40
3247 6503 9.469807 AAACATGCATTAAGAATAAAAACGTCA 57.530 25.926 0.00 0.00 0.00 4.35
3250 6506 7.441890 TGCATTAAGAATAAAAACGTCAGGA 57.558 32.000 0.00 0.00 0.00 3.86
3262 6518 2.764128 TCAGGAGATGACCCCCGC 60.764 66.667 0.00 0.00 31.12 6.13
3274 6530 3.771160 CCCCGCGTAGGCTCAAGT 61.771 66.667 4.92 0.00 39.21 3.16
3277 6533 1.065928 CCGCGTAGGCTCAAGTAGG 59.934 63.158 4.92 0.00 36.88 3.18
3328 6584 0.537371 CAACTCCCTCAAACCGGCTT 60.537 55.000 0.00 0.00 0.00 4.35
3329 6585 0.185175 AACTCCCTCAAACCGGCTTT 59.815 50.000 0.00 0.00 0.00 3.51
3337 6593 0.887387 CAAACCGGCTTTCCCTTCGA 60.887 55.000 0.00 0.00 0.00 3.71
3346 6602 4.689549 TCCCTTCGACCGGCTCCA 62.690 66.667 0.00 0.00 0.00 3.86
3408 6664 2.018727 CTTGCAACAACCAGCAGCCA 62.019 55.000 0.00 0.00 42.39 4.75
3410 6666 2.492773 GCAACAACCAGCAGCCAGT 61.493 57.895 0.00 0.00 0.00 4.00
3418 6674 3.177884 AGCAGCCAGTGGGGTCAA 61.178 61.111 12.15 0.00 44.97 3.18
3431 6687 0.958822 GGGTCAACGCCTGTCAAATT 59.041 50.000 0.00 0.00 0.00 1.82
3443 6699 3.188460 CCTGTCAAATTCAACCGTACCAG 59.812 47.826 0.00 0.00 0.00 4.00
3446 6702 2.159382 CAAATTCAACCGTACCAGGCT 58.841 47.619 0.00 0.00 33.69 4.58
3447 6703 3.008157 TCAAATTCAACCGTACCAGGCTA 59.992 43.478 0.00 0.00 33.69 3.93
3448 6704 2.685850 ATTCAACCGTACCAGGCTAC 57.314 50.000 0.00 0.00 33.69 3.58
3449 6705 0.609662 TTCAACCGTACCAGGCTACC 59.390 55.000 0.00 0.00 33.69 3.18
3450 6706 0.542467 TCAACCGTACCAGGCTACCA 60.542 55.000 0.00 0.00 33.69 3.25
3451 6707 0.108329 CAACCGTACCAGGCTACCAG 60.108 60.000 0.00 0.00 33.69 4.00
3455 6711 0.178068 CGTACCAGGCTACCAGCAAT 59.822 55.000 0.00 0.00 44.75 3.56
3466 6722 3.243907 GCTACCAGCAATAGGAACGAGAT 60.244 47.826 0.00 0.00 41.89 2.75
3473 6729 3.181475 GCAATAGGAACGAGATGTCTCCA 60.181 47.826 4.54 0.00 39.79 3.86
3476 6732 2.248248 AGGAACGAGATGTCTCCAACA 58.752 47.619 4.54 0.00 43.51 3.33
3500 6757 0.108138 GGAGAGCGTGGCTACAATGT 60.108 55.000 0.00 0.00 39.88 2.71
3506 6763 1.447140 GTGGCTACAATGTCGCCGA 60.447 57.895 21.44 9.95 45.65 5.54
3512 6769 2.798499 GCTACAATGTCGCCGATACTGT 60.798 50.000 3.08 3.08 0.00 3.55
3519 6776 1.153901 CGCCGATACTGTTGACCGT 60.154 57.895 0.00 0.00 0.00 4.83
3533 6790 2.889617 CCGTGACGGCCTACATCA 59.110 61.111 12.53 0.00 41.17 3.07
3535 6792 1.663379 CCGTGACGGCCTACATCAGA 61.663 60.000 12.53 0.00 41.17 3.27
3547 6804 3.157252 ATCAGAGCGGCCCGACAT 61.157 61.111 7.68 0.00 0.00 3.06
3557 6814 0.392461 GGCCCGACATTGTAGAAGCA 60.392 55.000 11.72 0.00 0.00 3.91
3560 6817 2.743183 GCCCGACATTGTAGAAGCATCT 60.743 50.000 0.00 0.00 39.82 2.90
3574 6831 4.047125 ATCTTGCCACCCACCCCG 62.047 66.667 0.00 0.00 0.00 5.73
3597 6854 1.738099 GCCACAGTCTACGTGCCAG 60.738 63.158 0.00 0.00 32.85 4.85
3601 6874 2.165641 CCACAGTCTACGTGCCAGAATA 59.834 50.000 0.00 0.00 32.85 1.75
3606 6879 3.119101 AGTCTACGTGCCAGAATACCAAG 60.119 47.826 0.00 0.00 0.00 3.61
3611 6884 0.038021 TGCCAGAATACCAAGCAGCA 59.962 50.000 0.00 0.00 0.00 4.41
3692 6965 3.092511 GGAGGCCAGGGATGCTGA 61.093 66.667 5.01 0.00 0.00 4.26
3702 6975 2.668632 GATGCTGACAACGGGGGA 59.331 61.111 0.00 0.00 0.00 4.81
3759 7032 1.245732 CCCGAGTATAAGACCTCCCG 58.754 60.000 0.00 0.00 0.00 5.14
3794 7069 0.472471 GGGGGTCGGCTCATTCATTA 59.528 55.000 0.00 0.00 0.00 1.90
3795 7070 1.133915 GGGGGTCGGCTCATTCATTAA 60.134 52.381 0.00 0.00 0.00 1.40
3798 7073 3.279434 GGGTCGGCTCATTCATTAAACT 58.721 45.455 0.00 0.00 0.00 2.66
3806 7081 6.183360 CGGCTCATTCATTAAACTACACACAT 60.183 38.462 0.00 0.00 0.00 3.21
3807 7082 7.538575 GGCTCATTCATTAAACTACACACATT 58.461 34.615 0.00 0.00 0.00 2.71
3896 7180 5.412286 TCATGTACACCTTGTGTTCATCATG 59.588 40.000 14.13 16.22 46.22 3.07
3902 7186 4.410099 ACCTTGTGTTCATCATGGTGATT 58.590 39.130 10.04 0.00 40.29 2.57
3921 7205 0.116342 TCTTGCAGGAGTAGGGGTGA 59.884 55.000 0.00 0.00 0.00 4.02
3995 7279 0.387929 GTGTCTAATCCCGCATCCGA 59.612 55.000 0.00 0.00 36.29 4.55
3997 7281 1.691976 TGTCTAATCCCGCATCCGAAT 59.308 47.619 0.00 0.00 36.29 3.34
3999 7283 1.691976 TCTAATCCCGCATCCGAATGT 59.308 47.619 0.00 0.00 35.18 2.71
4005 7289 1.585261 CGCATCCGAATGTCGTCGA 60.585 57.895 0.00 0.00 43.86 4.20
4012 7296 1.063412 CGAATGTCGTCGACGCTCAA 61.063 55.000 32.19 17.21 43.86 3.02
4013 7297 0.635731 GAATGTCGTCGACGCTCAAG 59.364 55.000 32.19 6.30 39.60 3.02
4014 7298 0.240145 AATGTCGTCGACGCTCAAGA 59.760 50.000 32.19 14.67 39.60 3.02
4015 7299 0.452184 ATGTCGTCGACGCTCAAGAT 59.548 50.000 32.19 16.33 39.60 2.40
4016 7300 1.081094 TGTCGTCGACGCTCAAGATA 58.919 50.000 32.19 10.45 39.60 1.98
4017 7301 1.669265 TGTCGTCGACGCTCAAGATAT 59.331 47.619 32.19 0.00 39.60 1.63
4018 7302 2.286242 TGTCGTCGACGCTCAAGATATC 60.286 50.000 32.19 11.81 39.60 1.63
4019 7303 1.263484 TCGTCGACGCTCAAGATATCC 59.737 52.381 32.19 0.00 39.60 2.59
4020 7304 1.663445 CGTCGACGCTCAAGATATCCC 60.663 57.143 26.59 0.00 0.00 3.85
4021 7305 1.337071 GTCGACGCTCAAGATATCCCA 59.663 52.381 0.00 0.00 0.00 4.37
4022 7306 2.029828 GTCGACGCTCAAGATATCCCAT 60.030 50.000 0.00 0.00 0.00 4.00
4023 7307 2.029918 TCGACGCTCAAGATATCCCATG 60.030 50.000 0.00 0.00 0.00 3.66
4024 7308 2.693069 GACGCTCAAGATATCCCATGG 58.307 52.381 4.14 4.14 0.00 3.66
4025 7309 1.271054 ACGCTCAAGATATCCCATGGC 60.271 52.381 6.09 0.00 0.00 4.40
4026 7310 1.271001 CGCTCAAGATATCCCATGGCA 60.271 52.381 6.09 0.00 0.00 4.92
4027 7311 2.617276 CGCTCAAGATATCCCATGGCAT 60.617 50.000 6.09 0.00 0.00 4.40
4028 7312 3.015327 GCTCAAGATATCCCATGGCATC 58.985 50.000 6.09 8.57 0.00 3.91
4029 7313 3.308259 GCTCAAGATATCCCATGGCATCT 60.308 47.826 6.09 10.77 0.00 2.90
4030 7314 4.262617 CTCAAGATATCCCATGGCATCTG 58.737 47.826 17.60 13.16 29.16 2.90
4031 7315 2.753452 CAAGATATCCCATGGCATCTGC 59.247 50.000 17.60 0.00 41.14 4.26
4043 7327 2.144482 GCATCTGCCATGCAAATACC 57.856 50.000 11.85 0.00 44.00 2.73
4044 7328 1.409790 GCATCTGCCATGCAAATACCA 59.590 47.619 11.85 0.00 44.00 3.25
4045 7329 2.800629 GCATCTGCCATGCAAATACCAC 60.801 50.000 11.85 0.00 44.00 4.16
4046 7330 1.093972 TCTGCCATGCAAATACCACG 58.906 50.000 0.00 0.00 38.41 4.94
4047 7331 0.101040 CTGCCATGCAAATACCACGG 59.899 55.000 0.00 0.00 38.41 4.94
4048 7332 1.318886 TGCCATGCAAATACCACGGG 61.319 55.000 0.00 0.00 34.76 5.28
4049 7333 1.034838 GCCATGCAAATACCACGGGA 61.035 55.000 0.00 0.00 0.00 5.14
4050 7334 1.468985 CCATGCAAATACCACGGGAA 58.531 50.000 0.00 0.00 0.00 3.97
4051 7335 1.821753 CCATGCAAATACCACGGGAAA 59.178 47.619 0.00 0.00 0.00 3.13
4052 7336 2.232452 CCATGCAAATACCACGGGAAAA 59.768 45.455 0.00 0.00 0.00 2.29
4053 7337 3.306364 CCATGCAAATACCACGGGAAAAA 60.306 43.478 0.00 0.00 0.00 1.94
4083 7367 2.753849 GCCACCAAGCGGCCAATA 60.754 61.111 2.24 0.00 44.22 1.90
4084 7368 2.774799 GCCACCAAGCGGCCAATAG 61.775 63.158 2.24 0.00 44.22 1.73
4085 7369 1.077787 CCACCAAGCGGCCAATAGA 60.078 57.895 2.24 0.00 34.57 1.98
4086 7370 0.466189 CCACCAAGCGGCCAATAGAT 60.466 55.000 2.24 0.00 34.57 1.98
4087 7371 0.947244 CACCAAGCGGCCAATAGATC 59.053 55.000 2.24 0.00 34.57 2.75
4088 7372 0.546122 ACCAAGCGGCCAATAGATCA 59.454 50.000 2.24 0.00 34.57 2.92
4089 7373 1.233019 CCAAGCGGCCAATAGATCAG 58.767 55.000 2.24 0.00 0.00 2.90
4090 7374 1.202687 CCAAGCGGCCAATAGATCAGA 60.203 52.381 2.24 0.00 0.00 3.27
4091 7375 2.141517 CAAGCGGCCAATAGATCAGAG 58.858 52.381 2.24 0.00 0.00 3.35
4092 7376 0.683973 AGCGGCCAATAGATCAGAGG 59.316 55.000 2.24 0.00 0.00 3.69
4093 7377 0.952984 GCGGCCAATAGATCAGAGGC 60.953 60.000 2.24 9.25 44.48 4.70
4094 7378 0.683973 CGGCCAATAGATCAGAGGCT 59.316 55.000 2.24 0.00 44.60 4.58
4095 7379 1.895798 CGGCCAATAGATCAGAGGCTA 59.104 52.381 2.24 0.00 44.60 3.93
4096 7380 2.499289 CGGCCAATAGATCAGAGGCTAT 59.501 50.000 2.24 0.00 44.60 2.97
4097 7381 3.678252 CGGCCAATAGATCAGAGGCTATG 60.678 52.174 2.24 1.88 44.60 2.23
4098 7382 3.269178 GCCAATAGATCAGAGGCTATGC 58.731 50.000 3.77 0.00 42.01 3.14
4116 7400 4.192000 CGCGAGGCAAGATGACTT 57.808 55.556 0.00 0.00 34.53 3.01
4125 7409 0.524862 CAAGATGACTTGCTGCCACC 59.475 55.000 0.00 0.00 45.19 4.61
4126 7410 0.957395 AAGATGACTTGCTGCCACCG 60.957 55.000 0.00 0.00 34.80 4.94
4127 7411 1.672356 GATGACTTGCTGCCACCGT 60.672 57.895 0.00 0.00 0.00 4.83
4128 7412 1.639298 GATGACTTGCTGCCACCGTC 61.639 60.000 0.00 0.00 0.00 4.79
4129 7413 2.280797 GACTTGCTGCCACCGTCA 60.281 61.111 0.00 0.00 0.00 4.35
4130 7414 1.672356 GACTTGCTGCCACCGTCAT 60.672 57.895 0.00 0.00 0.00 3.06
4131 7415 1.639298 GACTTGCTGCCACCGTCATC 61.639 60.000 0.00 0.00 0.00 2.92
4132 7416 1.672030 CTTGCTGCCACCGTCATCA 60.672 57.895 0.00 0.00 0.00 3.07
4133 7417 1.915614 CTTGCTGCCACCGTCATCAC 61.916 60.000 0.00 0.00 0.00 3.06
4134 7418 3.490759 GCTGCCACCGTCATCACG 61.491 66.667 0.00 0.00 46.29 4.35
4135 7419 2.048222 CTGCCACCGTCATCACGT 60.048 61.111 0.00 0.00 45.17 4.49
4136 7420 2.048597 TGCCACCGTCATCACGTC 60.049 61.111 0.00 0.00 45.17 4.34
4137 7421 2.813908 GCCACCGTCATCACGTCC 60.814 66.667 0.00 0.00 45.17 4.79
4138 7422 2.654289 CCACCGTCATCACGTCCA 59.346 61.111 0.00 0.00 45.17 4.02
4139 7423 1.218047 CCACCGTCATCACGTCCAT 59.782 57.895 0.00 0.00 45.17 3.41
4140 7424 0.806102 CCACCGTCATCACGTCCATC 60.806 60.000 0.00 0.00 45.17 3.51
4141 7425 0.108851 CACCGTCATCACGTCCATCA 60.109 55.000 0.00 0.00 45.17 3.07
4142 7426 0.824109 ACCGTCATCACGTCCATCAT 59.176 50.000 0.00 0.00 45.17 2.45
4143 7427 2.028876 ACCGTCATCACGTCCATCATA 58.971 47.619 0.00 0.00 45.17 2.15
4144 7428 2.223735 ACCGTCATCACGTCCATCATAC 60.224 50.000 0.00 0.00 45.17 2.39
4145 7429 2.034685 CCGTCATCACGTCCATCATACT 59.965 50.000 0.00 0.00 45.17 2.12
4146 7430 3.252458 CCGTCATCACGTCCATCATACTA 59.748 47.826 0.00 0.00 45.17 1.82
4147 7431 4.219802 CGTCATCACGTCCATCATACTAC 58.780 47.826 0.00 0.00 41.42 2.73
4148 7432 4.547532 GTCATCACGTCCATCATACTACC 58.452 47.826 0.00 0.00 0.00 3.18
4149 7433 4.037565 GTCATCACGTCCATCATACTACCA 59.962 45.833 0.00 0.00 0.00 3.25
4150 7434 4.647399 TCATCACGTCCATCATACTACCAA 59.353 41.667 0.00 0.00 0.00 3.67
4151 7435 4.649088 TCACGTCCATCATACTACCAAG 57.351 45.455 0.00 0.00 0.00 3.61
4152 7436 3.123804 CACGTCCATCATACTACCAAGC 58.876 50.000 0.00 0.00 0.00 4.01
4153 7437 3.031736 ACGTCCATCATACTACCAAGCT 58.968 45.455 0.00 0.00 0.00 3.74
4154 7438 3.181475 ACGTCCATCATACTACCAAGCTG 60.181 47.826 0.00 0.00 0.00 4.24
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 2.476320 GGCTCCCTGCTTCAATCGC 61.476 63.158 0.00 0.00 42.39 4.58
38 39 1.302511 GTTCGGCTCCCTGCTTCAA 60.303 57.895 0.00 0.00 42.39 2.69
55 56 1.952296 CAAACCTCTTGCTTGCTCAGT 59.048 47.619 0.00 0.00 0.00 3.41
80 81 5.122707 TCTATAACATTCACATGGGCCAA 57.877 39.130 11.89 0.00 34.27 4.52
81 82 4.787135 TCTATAACATTCACATGGGCCA 57.213 40.909 9.61 9.61 34.27 5.36
108 109 6.667414 AGCCTATTCCATGTTAAAACCATCAA 59.333 34.615 0.00 0.00 0.00 2.57
112 113 5.417580 GTGAGCCTATTCCATGTTAAAACCA 59.582 40.000 0.00 0.00 0.00 3.67
140 141 4.437239 CCTTAGTGTCAGCTAGTGATTGG 58.563 47.826 0.00 0.00 37.56 3.16
176 177 1.203523 GCTTTGTGGTTGTGGTGTTCA 59.796 47.619 0.00 0.00 0.00 3.18
177 178 1.470805 GGCTTTGTGGTTGTGGTGTTC 60.471 52.381 0.00 0.00 0.00 3.18
179 180 1.662438 CGGCTTTGTGGTTGTGGTGT 61.662 55.000 0.00 0.00 0.00 4.16
180 181 1.065600 CGGCTTTGTGGTTGTGGTG 59.934 57.895 0.00 0.00 0.00 4.17
181 182 0.681564 TTCGGCTTTGTGGTTGTGGT 60.682 50.000 0.00 0.00 0.00 4.16
182 183 0.248866 GTTCGGCTTTGTGGTTGTGG 60.249 55.000 0.00 0.00 0.00 4.17
218 219 6.261381 AGAGAATGTAGTTGTTAACCGCAAAA 59.739 34.615 2.48 0.00 0.00 2.44
219 220 5.761234 AGAGAATGTAGTTGTTAACCGCAAA 59.239 36.000 2.48 0.00 0.00 3.68
220 221 5.302360 AGAGAATGTAGTTGTTAACCGCAA 58.698 37.500 2.48 0.00 0.00 4.85
221 222 4.890088 AGAGAATGTAGTTGTTAACCGCA 58.110 39.130 2.48 0.00 0.00 5.69
222 223 5.638234 AGAAGAGAATGTAGTTGTTAACCGC 59.362 40.000 2.48 0.00 0.00 5.68
223 224 6.866770 TGAGAAGAGAATGTAGTTGTTAACCG 59.133 38.462 2.48 0.00 0.00 4.44
224 225 8.088981 TCTGAGAAGAGAATGTAGTTGTTAACC 58.911 37.037 2.48 0.00 0.00 2.85
225 226 9.477484 TTCTGAGAAGAGAATGTAGTTGTTAAC 57.523 33.333 0.00 0.00 0.00 2.01
226 227 9.477484 GTTCTGAGAAGAGAATGTAGTTGTTAA 57.523 33.333 0.00 0.00 34.50 2.01
227 228 8.638873 TGTTCTGAGAAGAGAATGTAGTTGTTA 58.361 33.333 0.00 0.00 34.50 2.41
228 229 7.500992 TGTTCTGAGAAGAGAATGTAGTTGTT 58.499 34.615 0.00 0.00 34.50 2.83
229 230 7.055667 TGTTCTGAGAAGAGAATGTAGTTGT 57.944 36.000 0.00 0.00 34.50 3.32
230 231 7.953158 TTGTTCTGAGAAGAGAATGTAGTTG 57.047 36.000 0.00 0.00 34.50 3.16
234 235 9.140286 CGTTAATTGTTCTGAGAAGAGAATGTA 57.860 33.333 0.00 0.00 34.50 2.29
235 236 7.657761 ACGTTAATTGTTCTGAGAAGAGAATGT 59.342 33.333 0.00 0.00 34.50 2.71
236 237 8.023050 ACGTTAATTGTTCTGAGAAGAGAATG 57.977 34.615 0.00 0.00 34.50 2.67
237 238 8.091449 AGACGTTAATTGTTCTGAGAAGAGAAT 58.909 33.333 0.00 0.00 34.50 2.40
238 239 7.434492 AGACGTTAATTGTTCTGAGAAGAGAA 58.566 34.615 0.00 0.00 0.00 2.87
239 240 6.982852 AGACGTTAATTGTTCTGAGAAGAGA 58.017 36.000 0.00 0.00 0.00 3.10
240 241 7.087639 AGAGACGTTAATTGTTCTGAGAAGAG 58.912 38.462 0.00 0.00 0.00 2.85
241 242 6.982852 AGAGACGTTAATTGTTCTGAGAAGA 58.017 36.000 0.00 0.00 0.00 2.87
242 243 7.008810 GCTAGAGACGTTAATTGTTCTGAGAAG 59.991 40.741 0.00 0.00 0.00 2.85
243 244 6.807230 GCTAGAGACGTTAATTGTTCTGAGAA 59.193 38.462 0.00 0.00 0.00 2.87
244 245 6.323266 GCTAGAGACGTTAATTGTTCTGAGA 58.677 40.000 0.00 0.00 0.00 3.27
245 246 5.228220 CGCTAGAGACGTTAATTGTTCTGAG 59.772 44.000 0.00 0.00 0.00 3.35
246 247 5.093457 CGCTAGAGACGTTAATTGTTCTGA 58.907 41.667 0.00 0.00 0.00 3.27
247 248 4.265556 CCGCTAGAGACGTTAATTGTTCTG 59.734 45.833 0.00 0.00 0.00 3.02
248 249 4.421948 CCGCTAGAGACGTTAATTGTTCT 58.578 43.478 0.00 0.00 0.00 3.01
308 309 8.360132 CGTTTGTTAGGTTTTAATTATGTTCGC 58.640 33.333 0.00 0.00 0.00 4.70
309 310 9.596677 TCGTTTGTTAGGTTTTAATTATGTTCG 57.403 29.630 0.00 0.00 0.00 3.95
369 370 9.397280 GATTAAGTCTTTTTCCTATAGCAGGTT 57.603 33.333 0.00 0.00 45.71 3.50
412 414 6.749216 ATACTAAATACATGCACTTCGTCG 57.251 37.500 0.00 0.00 0.00 5.12
420 422 8.978472 GGAGGGAGTATATACTAAATACATGCA 58.022 37.037 15.42 0.00 36.50 3.96
423 425 9.765295 AACGGAGGGAGTATATACTAAATACAT 57.235 33.333 15.42 2.29 36.50 2.29
424 426 9.236006 GAACGGAGGGAGTATATACTAAATACA 57.764 37.037 15.42 0.00 36.50 2.29
434 436 5.906772 ATTTTGGAACGGAGGGAGTATAT 57.093 39.130 0.00 0.00 0.00 0.86
437 439 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
438 440 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
439 441 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
440 442 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
441 443 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
442 444 4.770795 AGTCATCTATTTTGGAACGGAGG 58.229 43.478 0.00 0.00 0.00 4.30
443 445 5.419542 TGAGTCATCTATTTTGGAACGGAG 58.580 41.667 0.00 0.00 0.00 4.63
444 446 5.414789 TGAGTCATCTATTTTGGAACGGA 57.585 39.130 0.00 0.00 0.00 4.69
445 447 5.643777 AGTTGAGTCATCTATTTTGGAACGG 59.356 40.000 1.70 0.00 0.00 4.44
446 448 6.727824 AGTTGAGTCATCTATTTTGGAACG 57.272 37.500 1.70 0.00 0.00 3.95
447 449 7.875971 ACAAGTTGAGTCATCTATTTTGGAAC 58.124 34.615 10.54 0.00 0.00 3.62
448 450 8.999431 GTACAAGTTGAGTCATCTATTTTGGAA 58.001 33.333 10.54 0.00 0.00 3.53
449 451 8.375506 AGTACAAGTTGAGTCATCTATTTTGGA 58.624 33.333 10.54 0.00 0.00 3.53
450 452 8.553459 AGTACAAGTTGAGTCATCTATTTTGG 57.447 34.615 10.54 0.00 0.00 3.28
455 457 9.344772 CCTACTAGTACAAGTTGAGTCATCTAT 57.655 37.037 10.54 0.00 0.00 1.98
456 458 8.546322 TCCTACTAGTACAAGTTGAGTCATCTA 58.454 37.037 10.54 2.48 0.00 1.98
457 459 7.403671 TCCTACTAGTACAAGTTGAGTCATCT 58.596 38.462 10.54 0.00 0.00 2.90
458 460 7.337436 ACTCCTACTAGTACAAGTTGAGTCATC 59.663 40.741 10.54 0.00 36.46 2.92
459 461 7.176490 ACTCCTACTAGTACAAGTTGAGTCAT 58.824 38.462 10.54 0.00 36.46 3.06
460 462 6.540995 ACTCCTACTAGTACAAGTTGAGTCA 58.459 40.000 10.54 0.00 36.46 3.41
461 463 8.558973 TTACTCCTACTAGTACAAGTTGAGTC 57.441 38.462 10.54 0.00 39.31 3.36
462 464 8.381636 TCTTACTCCTACTAGTACAAGTTGAGT 58.618 37.037 10.54 5.03 40.52 3.41
463 465 8.789825 TCTTACTCCTACTAGTACAAGTTGAG 57.210 38.462 10.54 12.98 35.18 3.02
464 466 9.578576 TTTCTTACTCCTACTAGTACAAGTTGA 57.421 33.333 10.54 11.46 31.73 3.18
465 467 9.623350 GTTTCTTACTCCTACTAGTACAAGTTG 57.377 37.037 14.53 0.00 31.73 3.16
466 468 9.359653 TGTTTCTTACTCCTACTAGTACAAGTT 57.640 33.333 14.53 3.82 31.73 2.66
467 469 8.930846 TGTTTCTTACTCCTACTAGTACAAGT 57.069 34.615 14.01 14.01 31.73 3.16
468 470 9.623350 GTTGTTTCTTACTCCTACTAGTACAAG 57.377 37.037 0.00 2.11 31.73 3.16
469 471 9.135189 TGTTGTTTCTTACTCCTACTAGTACAA 57.865 33.333 0.00 0.00 31.73 2.41
470 472 8.696043 TGTTGTTTCTTACTCCTACTAGTACA 57.304 34.615 0.00 0.00 31.73 2.90
471 473 9.570488 CATGTTGTTTCTTACTCCTACTAGTAC 57.430 37.037 0.00 0.00 31.73 2.73
472 474 9.524496 TCATGTTGTTTCTTACTCCTACTAGTA 57.476 33.333 1.89 1.89 0.00 1.82
473 475 8.418597 TCATGTTGTTTCTTACTCCTACTAGT 57.581 34.615 0.00 0.00 0.00 2.57
474 476 7.489757 GCTCATGTTGTTTCTTACTCCTACTAG 59.510 40.741 0.00 0.00 0.00 2.57
475 477 7.039293 TGCTCATGTTGTTTCTTACTCCTACTA 60.039 37.037 0.00 0.00 0.00 1.82
476 478 6.166982 GCTCATGTTGTTTCTTACTCCTACT 58.833 40.000 0.00 0.00 0.00 2.57
477 479 5.932303 TGCTCATGTTGTTTCTTACTCCTAC 59.068 40.000 0.00 0.00 0.00 3.18
478 480 6.109156 TGCTCATGTTGTTTCTTACTCCTA 57.891 37.500 0.00 0.00 0.00 2.94
479 481 4.973168 TGCTCATGTTGTTTCTTACTCCT 58.027 39.130 0.00 0.00 0.00 3.69
480 482 4.378874 GCTGCTCATGTTGTTTCTTACTCC 60.379 45.833 0.00 0.00 0.00 3.85
481 483 4.667668 CGCTGCTCATGTTGTTTCTTACTC 60.668 45.833 0.00 0.00 0.00 2.59
482 484 3.187227 CGCTGCTCATGTTGTTTCTTACT 59.813 43.478 0.00 0.00 0.00 2.24
483 485 3.058914 ACGCTGCTCATGTTGTTTCTTAC 60.059 43.478 0.00 0.00 0.00 2.34
484 486 3.058983 CACGCTGCTCATGTTGTTTCTTA 60.059 43.478 0.00 0.00 0.00 2.10
518 1002 1.148310 CGATGCTTCGTTGGTCAGTT 58.852 50.000 13.46 0.00 40.53 3.16
539 1023 3.246619 GAGAAGCGTAACAGAGAACAGG 58.753 50.000 0.00 0.00 0.00 4.00
544 1028 1.199327 CACGGAGAAGCGTAACAGAGA 59.801 52.381 0.00 0.00 0.00 3.10
545 1029 1.618861 CACGGAGAAGCGTAACAGAG 58.381 55.000 0.00 0.00 0.00 3.35
551 1035 0.384309 CTATGGCACGGAGAAGCGTA 59.616 55.000 0.00 0.00 33.48 4.42
554 1038 1.134670 AGTTCTATGGCACGGAGAAGC 60.135 52.381 8.20 5.04 33.33 3.86
604 1088 2.228822 GGTGCTTCCATCACGTGAAATT 59.771 45.455 24.13 2.74 35.39 1.82
623 1107 5.959583 TCCAACACCTTAAATTTTTGGGT 57.040 34.783 14.24 9.41 35.26 4.51
630 1114 6.739331 TTTGACCATCCAACACCTTAAATT 57.261 33.333 0.00 0.00 0.00 1.82
631 1115 6.098982 TGTTTTGACCATCCAACACCTTAAAT 59.901 34.615 0.00 0.00 0.00 1.40
788 1272 3.242316 CCTGCTTAATTTTACTCGCCGAC 60.242 47.826 0.00 0.00 0.00 4.79
848 1359 0.882484 TGCGGAACTGCGTTTCATCA 60.882 50.000 1.19 0.00 37.81 3.07
929 1442 3.712881 GTTGCCCGTCGTGCTCAC 61.713 66.667 0.47 0.00 0.00 3.51
1031 1547 2.202810 GGTGCTAGCTCTCCGTGC 60.203 66.667 17.23 0.00 0.00 5.34
1039 1555 1.673665 GTTGCTGCTGGTGCTAGCT 60.674 57.895 17.23 0.00 44.01 3.32
1045 1561 2.337532 GGCAAGTTGCTGCTGGTG 59.662 61.111 26.16 0.00 44.28 4.17
1046 1562 3.289834 CGGCAAGTTGCTGCTGGT 61.290 61.111 26.16 0.00 43.46 4.00
1099 1616 4.620937 GATTCCCCCGCCGGCTAC 62.621 72.222 26.68 0.00 0.00 3.58
1142 1659 1.448922 CGTAGAGGAAGCTCGGGAGG 61.449 65.000 0.00 0.00 0.00 4.30
1387 1904 4.566426 AGGGGAGATTCTCAAACAGAAG 57.434 45.455 15.36 0.00 44.71 2.85
1437 4584 0.320697 CGGAAGAAAAGTCCTCCCGT 59.679 55.000 0.00 0.00 31.35 5.28
1601 4748 4.009675 TGTCTGCTCGGCTAATTGATTTT 58.990 39.130 0.00 0.00 0.00 1.82
1632 4779 0.668706 CAGAAGTCTGGTCAGGCGTG 60.669 60.000 0.00 0.00 40.20 5.34
1655 4802 2.034053 TGAAATCGAAATAATGGCCGCC 59.966 45.455 1.04 1.04 0.00 6.13
1674 4902 3.214328 TCGCTGCTGTATCAGTATCTGA 58.786 45.455 0.00 1.92 44.99 3.27
1676 4904 4.655762 TTTCGCTGCTGTATCAGTATCT 57.344 40.909 0.00 0.00 36.49 1.98
1683 4911 4.521943 GATCATGTTTTCGCTGCTGTATC 58.478 43.478 0.00 0.00 0.00 2.24
2094 5322 2.475487 GCATTACGAAGGAAGATACGCC 59.525 50.000 0.00 0.00 0.00 5.68
2125 5353 2.834618 GCCCCCGTTCGATCAATGC 61.835 63.158 0.00 0.00 0.00 3.56
2138 5366 1.523938 CAGTTTAGCTAGCGCCCCC 60.524 63.158 9.55 0.00 36.60 5.40
2143 5371 2.668457 CAGAACACCAGTTTAGCTAGCG 59.332 50.000 9.55 0.00 38.30 4.26
2148 5376 2.618709 ACAAGCAGAACACCAGTTTAGC 59.381 45.455 0.00 0.00 38.30 3.09
2156 5384 1.268743 GCAGTTCACAAGCAGAACACC 60.269 52.381 8.54 0.00 45.93 4.16
2168 5396 0.590195 CTGAACAGCCTGCAGTTCAC 59.410 55.000 21.43 3.29 43.88 3.18
2231 5460 7.284716 TCGAACAGAAGAAAGCATATAGGAGTA 59.715 37.037 0.00 0.00 0.00 2.59
2233 5462 6.507900 TCGAACAGAAGAAAGCATATAGGAG 58.492 40.000 0.00 0.00 0.00 3.69
2234 5463 6.465439 TCGAACAGAAGAAAGCATATAGGA 57.535 37.500 0.00 0.00 0.00 2.94
2235 5464 7.721286 ATTCGAACAGAAGAAAGCATATAGG 57.279 36.000 0.00 0.00 42.92 2.57
2280 5509 4.566004 TCAGAAAATCCAGTCAACCTACG 58.434 43.478 0.00 0.00 0.00 3.51
2293 5522 2.552315 TGCAACCGAGGTTCAGAAAATC 59.448 45.455 4.25 0.00 36.00 2.17
2307 5536 0.448990 CATCATGGTGTCTGCAACCG 59.551 55.000 0.00 0.00 0.00 4.44
2386 5615 1.874562 CTTGCTGCACTGCTCCTTC 59.125 57.895 0.00 0.00 0.00 3.46
2538 5767 0.889638 CAGATGCTGCAGGGCTATGG 60.890 60.000 17.12 0.00 0.00 2.74
2539 5768 0.108019 TCAGATGCTGCAGGGCTATG 59.892 55.000 17.12 0.00 0.00 2.23
2540 5769 0.841961 TTCAGATGCTGCAGGGCTAT 59.158 50.000 17.12 0.00 0.00 2.97
2541 5770 0.107508 GTTCAGATGCTGCAGGGCTA 60.108 55.000 17.12 0.00 0.00 3.93
2558 5787 3.632145 AGCAAACGGATTTCAGTTCAGTT 59.368 39.130 0.00 0.00 33.29 3.16
2559 5788 3.214328 AGCAAACGGATTTCAGTTCAGT 58.786 40.909 0.00 0.00 33.29 3.41
2570 5812 1.327303 TGGCAAAAGAGCAAACGGAT 58.673 45.000 0.00 0.00 35.83 4.18
2588 5830 7.567409 GCAACAGTAATAAGCACACACATTTTG 60.567 37.037 0.00 0.00 0.00 2.44
2595 5837 4.452114 CAGAGCAACAGTAATAAGCACACA 59.548 41.667 0.00 0.00 0.00 3.72
2605 5847 4.645535 AGAAATCAGCAGAGCAACAGTAA 58.354 39.130 0.00 0.00 0.00 2.24
2776 6018 8.834465 CACCAATGAAAATCACAAACCATAAAA 58.166 29.630 0.00 0.00 0.00 1.52
2802 6044 7.176690 TGTTTCAGAATTCTCCCAAAAGATACC 59.823 37.037 4.57 0.00 0.00 2.73
2832 6075 3.244044 GGTTGTTGGCCTGCAAAATAAGA 60.244 43.478 3.32 0.00 0.00 2.10
2833 6076 3.066380 GGTTGTTGGCCTGCAAAATAAG 58.934 45.455 3.32 0.00 0.00 1.73
2835 6078 1.000283 CGGTTGTTGGCCTGCAAAATA 60.000 47.619 3.32 0.00 0.00 1.40
2871 6114 1.228862 GCTTCTTCCCTTGGGGCAA 60.229 57.895 5.78 0.00 43.94 4.52
2940 6187 5.698089 CCACTACTGATTATGCGATGTCAAT 59.302 40.000 0.00 0.00 0.00 2.57
2957 6204 7.224297 ACTGTTACAAACATCAATCCACTACT 58.776 34.615 0.00 0.00 41.26 2.57
2963 6210 7.433680 AGGAAAACTGTTACAAACATCAATCC 58.566 34.615 0.00 1.11 41.26 3.01
2972 6219 3.065648 GTGCCGAGGAAAACTGTTACAAA 59.934 43.478 0.00 0.00 0.00 2.83
3033 6280 6.739331 TTGTTTGGAACCTTAATGACCAAT 57.261 33.333 0.00 0.00 39.75 3.16
3071 6326 2.866762 GTGTGACTGTGAACCACTCTTC 59.133 50.000 0.00 0.00 35.11 2.87
3076 6331 1.202371 TCGAGTGTGACTGTGAACCAC 60.202 52.381 0.00 0.00 34.56 4.16
3094 6349 4.870363 ACAAACTTTGAATGGTTCCATCG 58.130 39.130 8.55 0.00 0.00 3.84
3097 6352 4.342665 GGGTACAAACTTTGAATGGTTCCA 59.657 41.667 8.55 0.00 0.00 3.53
3107 6362 6.337356 ACTGTTTTGATGGGTACAAACTTTG 58.663 36.000 0.00 0.00 37.05 2.77
3120 6375 4.147219 GGGACGAAAGACTGTTTTGATG 57.853 45.455 0.00 0.00 0.00 3.07
3150 6406 8.677300 GCCGTATGGACATGATGATTATTTTAT 58.323 33.333 4.73 0.00 37.49 1.40
3151 6407 7.663493 TGCCGTATGGACATGATGATTATTTTA 59.337 33.333 4.73 0.00 37.49 1.52
3152 6408 6.489700 TGCCGTATGGACATGATGATTATTTT 59.510 34.615 4.73 0.00 37.49 1.82
3156 6412 4.615588 TGCCGTATGGACATGATGATTA 57.384 40.909 4.73 0.00 37.49 1.75
3157 6413 3.490439 TGCCGTATGGACATGATGATT 57.510 42.857 4.73 0.00 37.49 2.57
3158 6414 3.181451 ACTTGCCGTATGGACATGATGAT 60.181 43.478 4.73 0.00 37.49 2.45
3159 6415 2.170397 ACTTGCCGTATGGACATGATGA 59.830 45.455 4.73 0.00 37.49 2.92
3160 6416 2.564771 ACTTGCCGTATGGACATGATG 58.435 47.619 4.73 0.00 37.49 3.07
3161 6417 3.281727 AACTTGCCGTATGGACATGAT 57.718 42.857 4.73 0.00 37.49 2.45
3162 6418 2.779755 AACTTGCCGTATGGACATGA 57.220 45.000 4.73 0.00 37.49 3.07
3163 6419 4.201910 CCTTAAACTTGCCGTATGGACATG 60.202 45.833 4.73 7.35 37.49 3.21
3164 6420 3.945285 CCTTAAACTTGCCGTATGGACAT 59.055 43.478 4.73 0.00 37.49 3.06
3165 6421 3.340034 CCTTAAACTTGCCGTATGGACA 58.660 45.455 4.73 0.00 37.49 4.02
3166 6422 2.096980 GCCTTAAACTTGCCGTATGGAC 59.903 50.000 4.73 0.00 37.49 4.02
3167 6423 2.290387 TGCCTTAAACTTGCCGTATGGA 60.290 45.455 4.73 0.00 37.49 3.41
3168 6424 2.088423 TGCCTTAAACTTGCCGTATGG 58.912 47.619 0.00 0.00 38.77 2.74
3169 6425 3.758300 CTTGCCTTAAACTTGCCGTATG 58.242 45.455 0.00 0.00 0.00 2.39
3170 6426 2.163613 GCTTGCCTTAAACTTGCCGTAT 59.836 45.455 0.00 0.00 0.00 3.06
3171 6427 1.538075 GCTTGCCTTAAACTTGCCGTA 59.462 47.619 0.00 0.00 0.00 4.02
3172 6428 0.313987 GCTTGCCTTAAACTTGCCGT 59.686 50.000 0.00 0.00 0.00 5.68
3173 6429 0.388520 GGCTTGCCTTAAACTTGCCG 60.389 55.000 4.11 0.00 0.00 5.69
3174 6430 0.678950 TGGCTTGCCTTAAACTTGCC 59.321 50.000 13.18 0.00 39.33 4.52
3175 6431 1.341209 ACTGGCTTGCCTTAAACTTGC 59.659 47.619 13.18 0.00 0.00 4.01
3176 6432 3.568007 TGTACTGGCTTGCCTTAAACTTG 59.432 43.478 13.18 0.00 0.00 3.16
3177 6433 3.827722 TGTACTGGCTTGCCTTAAACTT 58.172 40.909 13.18 0.00 0.00 2.66
3178 6434 3.502123 TGTACTGGCTTGCCTTAAACT 57.498 42.857 13.18 0.00 0.00 2.66
3179 6435 4.577834 TTTGTACTGGCTTGCCTTAAAC 57.422 40.909 13.18 6.62 0.00 2.01
3180 6436 5.799827 ATTTTGTACTGGCTTGCCTTAAA 57.200 34.783 13.18 4.69 0.00 1.52
3181 6437 6.571537 GCTTATTTTGTACTGGCTTGCCTTAA 60.572 38.462 13.18 0.00 0.00 1.85
3182 6438 5.105917 GCTTATTTTGTACTGGCTTGCCTTA 60.106 40.000 13.18 1.69 0.00 2.69
3183 6439 4.321974 GCTTATTTTGTACTGGCTTGCCTT 60.322 41.667 13.18 2.65 0.00 4.35
3184 6440 3.193479 GCTTATTTTGTACTGGCTTGCCT 59.807 43.478 13.18 0.00 0.00 4.75
3185 6441 3.511699 GCTTATTTTGTACTGGCTTGCC 58.488 45.455 4.43 4.43 0.00 4.52
3186 6442 3.193479 AGGCTTATTTTGTACTGGCTTGC 59.807 43.478 0.00 0.00 0.00 4.01
3187 6443 4.737054 CAGGCTTATTTTGTACTGGCTTG 58.263 43.478 0.00 0.00 0.00 4.01
3188 6444 3.193479 GCAGGCTTATTTTGTACTGGCTT 59.807 43.478 0.00 0.00 0.00 4.35
3189 6445 2.755103 GCAGGCTTATTTTGTACTGGCT 59.245 45.455 0.00 0.00 0.00 4.75
3190 6446 2.755103 AGCAGGCTTATTTTGTACTGGC 59.245 45.455 0.00 0.00 0.00 4.85
3191 6447 3.129287 CCAGCAGGCTTATTTTGTACTGG 59.871 47.826 0.00 0.00 36.53 4.00
3192 6448 3.129287 CCCAGCAGGCTTATTTTGTACTG 59.871 47.826 0.00 0.00 0.00 2.74
3193 6449 3.356290 CCCAGCAGGCTTATTTTGTACT 58.644 45.455 0.00 0.00 0.00 2.73
3194 6450 2.427095 CCCCAGCAGGCTTATTTTGTAC 59.573 50.000 0.00 0.00 0.00 2.90
3195 6451 2.733956 CCCCAGCAGGCTTATTTTGTA 58.266 47.619 0.00 0.00 0.00 2.41
3196 6452 1.560505 CCCCAGCAGGCTTATTTTGT 58.439 50.000 0.00 0.00 0.00 2.83
3209 6465 0.108662 GCATGTTTAGTTGCCCCAGC 60.109 55.000 0.00 0.00 40.48 4.85
3210 6466 1.255882 TGCATGTTTAGTTGCCCCAG 58.744 50.000 0.00 0.00 38.08 4.45
3211 6467 1.935799 ATGCATGTTTAGTTGCCCCA 58.064 45.000 0.00 0.00 38.08 4.96
3212 6468 4.159506 TCTTAATGCATGTTTAGTTGCCCC 59.840 41.667 0.00 0.00 38.08 5.80
3213 6469 5.323371 TCTTAATGCATGTTTAGTTGCCC 57.677 39.130 0.00 0.00 38.08 5.36
3214 6470 8.925161 TTATTCTTAATGCATGTTTAGTTGCC 57.075 30.769 0.00 0.00 38.08 4.52
3221 6477 9.469807 TGACGTTTTTATTCTTAATGCATGTTT 57.530 25.926 0.00 0.00 0.00 2.83
3222 6478 9.128107 CTGACGTTTTTATTCTTAATGCATGTT 57.872 29.630 0.00 0.00 0.00 2.71
3223 6479 7.754924 CCTGACGTTTTTATTCTTAATGCATGT 59.245 33.333 0.00 0.00 0.00 3.21
3224 6480 7.967854 TCCTGACGTTTTTATTCTTAATGCATG 59.032 33.333 0.00 0.00 0.00 4.06
3225 6481 8.050778 TCCTGACGTTTTTATTCTTAATGCAT 57.949 30.769 0.00 0.00 0.00 3.96
3226 6482 7.389330 TCTCCTGACGTTTTTATTCTTAATGCA 59.611 33.333 0.00 0.00 0.00 3.96
3227 6483 7.748847 TCTCCTGACGTTTTTATTCTTAATGC 58.251 34.615 0.00 0.00 0.00 3.56
3228 6484 9.708222 CATCTCCTGACGTTTTTATTCTTAATG 57.292 33.333 0.00 0.00 0.00 1.90
3229 6485 9.667107 TCATCTCCTGACGTTTTTATTCTTAAT 57.333 29.630 0.00 0.00 0.00 1.40
3230 6486 8.932791 GTCATCTCCTGACGTTTTTATTCTTAA 58.067 33.333 0.00 0.00 44.58 1.85
3231 6487 8.475331 GTCATCTCCTGACGTTTTTATTCTTA 57.525 34.615 0.00 0.00 44.58 2.10
3232 6488 7.365840 GTCATCTCCTGACGTTTTTATTCTT 57.634 36.000 0.00 0.00 44.58 2.52
3233 6489 6.969828 GTCATCTCCTGACGTTTTTATTCT 57.030 37.500 0.00 0.00 44.58 2.40
3245 6501 2.764128 GCGGGGGTCATCTCCTGA 60.764 66.667 0.00 0.00 0.00 3.86
3246 6502 4.227134 CGCGGGGGTCATCTCCTG 62.227 72.222 0.00 0.00 0.00 3.86
3247 6503 3.369410 TACGCGGGGGTCATCTCCT 62.369 63.158 12.47 0.00 0.00 3.69
3250 6506 2.838225 CCTACGCGGGGGTCATCT 60.838 66.667 12.47 0.00 0.00 2.90
3262 6518 1.204941 ACTTGCCTACTTGAGCCTACG 59.795 52.381 0.00 0.00 0.00 3.51
3274 6530 7.967854 CGATGTTTTGAAATATTGACTTGCCTA 59.032 33.333 0.00 0.00 0.00 3.93
3277 6533 6.034898 CCCGATGTTTTGAAATATTGACTTGC 59.965 38.462 0.00 0.00 0.00 4.01
3286 6542 2.420722 GCCGTCCCGATGTTTTGAAATA 59.579 45.455 0.00 0.00 0.00 1.40
3328 6584 3.387947 GGAGCCGGTCGAAGGGAA 61.388 66.667 1.90 0.00 0.00 3.97
3329 6585 4.689549 TGGAGCCGGTCGAAGGGA 62.690 66.667 1.90 0.00 0.00 4.20
3391 6647 2.441717 TGGCTGCTGGTTGTTGCA 60.442 55.556 0.00 0.00 37.63 4.08
3395 6651 2.203394 CCACTGGCTGCTGGTTGT 60.203 61.111 0.00 0.00 0.00 3.32
3408 6664 3.168528 ACAGGCGTTGACCCCACT 61.169 61.111 0.00 0.00 0.00 4.00
3410 6666 2.272230 TTTGACAGGCGTTGACCCCA 62.272 55.000 0.00 0.00 0.00 4.96
3418 6674 0.591170 CGGTTGAATTTGACAGGCGT 59.409 50.000 0.00 0.00 0.00 5.68
3431 6687 0.542467 TGGTAGCCTGGTACGGTTGA 60.542 55.000 0.00 0.00 0.00 3.18
3443 6699 1.138266 TCGTTCCTATTGCTGGTAGCC 59.862 52.381 0.00 0.00 41.51 3.93
3446 6702 3.704566 ACATCTCGTTCCTATTGCTGGTA 59.295 43.478 0.00 0.00 0.00 3.25
3447 6703 2.501723 ACATCTCGTTCCTATTGCTGGT 59.498 45.455 0.00 0.00 0.00 4.00
3448 6704 3.126831 GACATCTCGTTCCTATTGCTGG 58.873 50.000 0.00 0.00 0.00 4.85
3449 6705 4.047822 GAGACATCTCGTTCCTATTGCTG 58.952 47.826 0.00 0.00 32.78 4.41
3450 6706 3.068873 GGAGACATCTCGTTCCTATTGCT 59.931 47.826 2.86 0.00 43.76 3.91
3451 6707 3.181475 TGGAGACATCTCGTTCCTATTGC 60.181 47.826 2.86 0.00 43.76 3.56
3455 6711 3.427573 TGTTGGAGACATCTCGTTCCTA 58.572 45.455 2.86 0.00 43.76 2.94
3473 6729 1.079819 CCACGCTCTCCACGATGTT 60.080 57.895 0.00 0.00 0.00 2.71
3476 6732 1.753078 TAGCCACGCTCTCCACGAT 60.753 57.895 0.00 0.00 40.44 3.73
3483 6740 0.458543 CGACATTGTAGCCACGCTCT 60.459 55.000 0.00 0.00 40.44 4.09
3500 6757 1.138036 CGGTCAACAGTATCGGCGA 59.862 57.895 13.87 13.87 0.00 5.54
3506 6763 3.806591 CCGTCACGGTCAACAGTAT 57.193 52.632 8.54 0.00 42.73 2.12
3519 6776 1.816537 GCTCTGATGTAGGCCGTCA 59.183 57.895 0.00 0.31 37.52 4.35
3524 6781 2.280457 GGCCGCTCTGATGTAGGC 60.280 66.667 0.00 0.00 46.51 3.93
3527 6784 2.441348 TCGGGCCGCTCTGATGTA 60.441 61.111 23.83 0.00 0.00 2.29
3530 6787 2.735772 AATGTCGGGCCGCTCTGAT 61.736 57.895 23.83 5.09 0.00 2.90
3533 6790 2.298158 CTACAATGTCGGGCCGCTCT 62.298 60.000 23.83 4.37 0.00 4.09
3535 6792 1.895020 TTCTACAATGTCGGGCCGCT 61.895 55.000 23.83 5.22 0.00 5.52
3547 6804 2.436417 GGTGGCAAGATGCTTCTACAA 58.564 47.619 2.02 0.00 44.28 2.41
3557 6814 4.047125 CGGGGTGGGTGGCAAGAT 62.047 66.667 0.00 0.00 0.00 2.40
3574 6831 1.002250 CACGTAGACTGTGGCGTCAC 61.002 60.000 14.58 14.58 43.87 3.67
3584 6841 2.453521 TGGTATTCTGGCACGTAGACT 58.546 47.619 0.00 0.00 0.00 3.24
3597 6854 1.718757 CCGCCTGCTGCTTGGTATTC 61.719 60.000 0.00 0.00 38.05 1.75
3637 6910 3.948719 GGGTCCTGTTGGTCGCCA 61.949 66.667 0.00 0.00 34.23 5.69
3638 6911 4.717313 GGGGTCCTGTTGGTCGCC 62.717 72.222 0.00 0.00 44.13 5.54
3684 6957 2.438434 CCCCCGTTGTCAGCATCC 60.438 66.667 0.00 0.00 0.00 3.51
3687 6960 3.948719 GGTCCCCCGTTGTCAGCA 61.949 66.667 0.00 0.00 0.00 4.41
3702 6975 1.492993 GCCTGAGAAAGAGGGGTGGT 61.493 60.000 0.00 0.00 0.00 4.16
3773 7047 1.987807 ATGAATGAGCCGACCCCCTG 61.988 60.000 0.00 0.00 0.00 4.45
3794 7069 5.011329 TCCCTCGAGTAAATGTGTGTAGTTT 59.989 40.000 12.31 0.00 0.00 2.66
3795 7070 4.525487 TCCCTCGAGTAAATGTGTGTAGTT 59.475 41.667 12.31 0.00 0.00 2.24
3798 7073 4.338012 TCTCCCTCGAGTAAATGTGTGTA 58.662 43.478 12.31 0.00 37.40 2.90
3806 7081 2.026169 TCTGCTCTCTCCCTCGAGTAAA 60.026 50.000 12.31 0.00 37.40 2.01
3807 7082 1.560146 TCTGCTCTCTCCCTCGAGTAA 59.440 52.381 12.31 0.00 37.40 2.24
3848 7132 3.410631 CTCCTAGAGCTGTATCGGAGA 57.589 52.381 17.01 0.00 40.27 3.71
3872 7156 4.967036 TGATGAACACAAGGTGTACATGA 58.033 39.130 0.00 0.00 46.79 3.07
3896 7180 2.420687 CCCTACTCCTGCAAGAATCACC 60.421 54.545 0.00 0.00 34.07 4.02
3902 7186 0.116342 TCACCCCTACTCCTGCAAGA 59.884 55.000 0.00 0.00 34.07 3.02
3928 7212 3.766691 GTTCAGGGCCCTCGCGTA 61.767 66.667 25.77 1.11 35.02 4.42
3995 7279 0.240145 TCTTGAGCGTCGACGACATT 59.760 50.000 39.74 21.39 43.02 2.71
3997 7281 1.081094 TATCTTGAGCGTCGACGACA 58.919 50.000 39.74 31.66 43.02 4.35
3999 7283 1.263484 GGATATCTTGAGCGTCGACGA 59.737 52.381 39.74 19.42 43.02 4.20
4005 7289 1.271054 GCCATGGGATATCTTGAGCGT 60.271 52.381 15.13 0.00 0.00 5.07
4012 7296 2.803030 GCAGATGCCATGGGATATCT 57.197 50.000 19.96 11.28 31.55 1.98
4024 7308 1.409790 TGGTATTTGCATGGCAGATGC 59.590 47.619 11.95 11.95 40.61 3.91
4025 7309 2.542205 CGTGGTATTTGCATGGCAGATG 60.542 50.000 4.68 0.00 40.61 2.90
4026 7310 1.677576 CGTGGTATTTGCATGGCAGAT 59.322 47.619 0.00 0.00 40.61 2.90
4027 7311 1.093972 CGTGGTATTTGCATGGCAGA 58.906 50.000 0.00 0.00 40.61 4.26
4028 7312 0.101040 CCGTGGTATTTGCATGGCAG 59.899 55.000 0.00 0.00 40.61 4.85
4029 7313 1.318886 CCCGTGGTATTTGCATGGCA 61.319 55.000 0.00 0.00 36.47 4.92
4030 7314 1.034838 TCCCGTGGTATTTGCATGGC 61.035 55.000 0.00 0.00 0.00 4.40
4031 7315 1.468985 TTCCCGTGGTATTTGCATGG 58.531 50.000 0.00 0.00 0.00 3.66
4032 7316 3.584406 TTTTCCCGTGGTATTTGCATG 57.416 42.857 0.00 0.00 0.00 4.06
4067 7351 0.466189 ATCTATTGGCCGCTTGGTGG 60.466 55.000 0.00 0.00 36.10 4.61
4068 7352 0.947244 GATCTATTGGCCGCTTGGTG 59.053 55.000 0.00 0.00 34.16 4.17
4069 7353 0.546122 TGATCTATTGGCCGCTTGGT 59.454 50.000 0.00 0.00 34.16 3.67
4070 7354 1.202687 TCTGATCTATTGGCCGCTTGG 60.203 52.381 0.00 0.00 0.00 3.61
4071 7355 2.141517 CTCTGATCTATTGGCCGCTTG 58.858 52.381 0.00 0.00 0.00 4.01
4072 7356 1.071385 CCTCTGATCTATTGGCCGCTT 59.929 52.381 0.00 0.00 0.00 4.68
4073 7357 0.683973 CCTCTGATCTATTGGCCGCT 59.316 55.000 0.00 0.00 0.00 5.52
4074 7358 0.952984 GCCTCTGATCTATTGGCCGC 60.953 60.000 0.00 0.00 37.81 6.53
4075 7359 0.683973 AGCCTCTGATCTATTGGCCG 59.316 55.000 0.00 0.00 44.19 6.13
4076 7360 3.871485 CATAGCCTCTGATCTATTGGCC 58.129 50.000 0.00 0.00 44.19 5.36
4077 7361 3.269178 GCATAGCCTCTGATCTATTGGC 58.731 50.000 10.20 10.20 43.52 4.52
4078 7362 3.871485 GGCATAGCCTCTGATCTATTGG 58.129 50.000 0.00 0.00 46.69 3.16
4098 7382 1.448540 AAGTCATCTTGCCTCGCGG 60.449 57.895 6.13 0.00 32.09 6.46
4099 7383 1.712081 CAAGTCATCTTGCCTCGCG 59.288 57.895 0.00 0.00 43.34 5.87
4107 7391 0.957395 CGGTGGCAGCAAGTCATCTT 60.957 55.000 17.80 0.00 32.25 2.40
4108 7392 1.376424 CGGTGGCAGCAAGTCATCT 60.376 57.895 17.80 0.00 32.25 2.90
4109 7393 1.639298 GACGGTGGCAGCAAGTCATC 61.639 60.000 17.80 0.38 32.25 2.92
4110 7394 1.672356 GACGGTGGCAGCAAGTCAT 60.672 57.895 17.80 0.00 32.25 3.06
4111 7395 2.280797 GACGGTGGCAGCAAGTCA 60.281 61.111 17.80 0.00 32.57 3.41
4112 7396 1.639298 GATGACGGTGGCAGCAAGTC 61.639 60.000 17.80 16.22 0.00 3.01
4113 7397 1.672356 GATGACGGTGGCAGCAAGT 60.672 57.895 17.80 7.23 0.00 3.16
4114 7398 1.672030 TGATGACGGTGGCAGCAAG 60.672 57.895 17.80 3.67 0.00 4.01
4115 7399 1.965930 GTGATGACGGTGGCAGCAA 60.966 57.895 17.80 1.66 33.01 3.91
4116 7400 2.358615 GTGATGACGGTGGCAGCA 60.359 61.111 17.80 0.00 0.00 4.41
4117 7401 3.490759 CGTGATGACGGTGGCAGC 61.491 66.667 6.62 6.62 42.18 5.25
4126 7410 4.037565 TGGTAGTATGATGGACGTGATGAC 59.962 45.833 0.00 0.00 0.00 3.06
4127 7411 4.211920 TGGTAGTATGATGGACGTGATGA 58.788 43.478 0.00 0.00 0.00 2.92
4128 7412 4.584327 TGGTAGTATGATGGACGTGATG 57.416 45.455 0.00 0.00 0.00 3.07
4129 7413 4.501571 GCTTGGTAGTATGATGGACGTGAT 60.502 45.833 0.00 0.00 0.00 3.06
4130 7414 3.181479 GCTTGGTAGTATGATGGACGTGA 60.181 47.826 0.00 0.00 0.00 4.35
4131 7415 3.123804 GCTTGGTAGTATGATGGACGTG 58.876 50.000 0.00 0.00 0.00 4.49
4132 7416 3.031736 AGCTTGGTAGTATGATGGACGT 58.968 45.455 0.00 0.00 0.00 4.34
4133 7417 3.384668 CAGCTTGGTAGTATGATGGACG 58.615 50.000 0.00 0.00 0.00 4.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.