Multiple sequence alignment - TraesCS5A01G235600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G235600 chr5A 100.000 3339 0 0 1 3339 451470554 451467216 0.000000e+00 6167
1 TraesCS5A01G235600 chr5D 95.676 1434 54 5 1906 3337 350999190 350997763 0.000000e+00 2298
2 TraesCS5A01G235600 chr5D 92.320 1237 52 15 657 1889 351000439 350999242 0.000000e+00 1718
3 TraesCS5A01G235600 chr5B 95.882 1360 51 5 1913 3270 411814272 411812916 0.000000e+00 2196
4 TraesCS5A01G235600 chr5B 92.638 1236 50 15 657 1889 411815529 411814332 0.000000e+00 1740
5 TraesCS5A01G235600 chr5B 87.500 192 22 2 400 590 411815740 411815550 1.560000e-53 220


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G235600 chr5A 451467216 451470554 3338 True 6167.000000 6167 100.000000 1 3339 1 chr5A.!!$R1 3338
1 TraesCS5A01G235600 chr5D 350997763 351000439 2676 True 2008.000000 2298 93.998000 657 3337 2 chr5D.!!$R1 2680
2 TraesCS5A01G235600 chr5B 411812916 411815740 2824 True 1385.333333 2196 92.006667 400 3270 3 chr5B.!!$R1 2870

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
193 194 0.108774 TCACCGTGGTAATGTTGCCA 59.891 50.0 0.0 0.0 40.79 4.92 F
925 927 0.179936 CAACATGGCTCTCTCTCCCC 59.820 60.0 0.0 0.0 0.00 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1550 1571 0.318762 ACCAGAACGAGAAGCAGGAC 59.681 55.0 0.0 0.0 0.0 3.85 R
2880 2940 0.798776 CCTCGTTTGGATGACAGTGC 59.201 55.0 0.0 0.0 0.0 4.40 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.999821 TCTGCTTCTGTGGCGTAAA 57.000 47.368 0.00 0.00 0.00 2.01
19 20 2.248280 TCTGCTTCTGTGGCGTAAAA 57.752 45.000 0.00 0.00 0.00 1.52
20 21 2.566913 TCTGCTTCTGTGGCGTAAAAA 58.433 42.857 0.00 0.00 0.00 1.94
21 22 3.146066 TCTGCTTCTGTGGCGTAAAAAT 58.854 40.909 0.00 0.00 0.00 1.82
22 23 3.058293 TCTGCTTCTGTGGCGTAAAAATG 60.058 43.478 0.00 0.00 0.00 2.32
23 24 2.030363 TGCTTCTGTGGCGTAAAAATGG 60.030 45.455 0.00 0.00 0.00 3.16
24 25 2.227865 GCTTCTGTGGCGTAAAAATGGA 59.772 45.455 0.00 0.00 0.00 3.41
25 26 3.305064 GCTTCTGTGGCGTAAAAATGGAA 60.305 43.478 0.00 0.00 0.00 3.53
26 27 4.794655 GCTTCTGTGGCGTAAAAATGGAAA 60.795 41.667 0.00 0.00 0.00 3.13
27 28 4.920640 TCTGTGGCGTAAAAATGGAAAA 57.079 36.364 0.00 0.00 0.00 2.29
28 29 4.612943 TCTGTGGCGTAAAAATGGAAAAC 58.387 39.130 0.00 0.00 0.00 2.43
29 30 4.339814 TCTGTGGCGTAAAAATGGAAAACT 59.660 37.500 0.00 0.00 0.00 2.66
30 31 4.363999 TGTGGCGTAAAAATGGAAAACTG 58.636 39.130 0.00 0.00 0.00 3.16
31 32 3.183574 GTGGCGTAAAAATGGAAAACTGC 59.816 43.478 0.00 0.00 0.00 4.40
32 33 2.407026 GGCGTAAAAATGGAAAACTGCG 59.593 45.455 0.00 0.00 0.00 5.18
33 34 3.047093 GCGTAAAAATGGAAAACTGCGT 58.953 40.909 0.00 0.00 0.00 5.24
34 35 3.121496 GCGTAAAAATGGAAAACTGCGTG 60.121 43.478 0.00 0.00 0.00 5.34
35 36 4.039032 CGTAAAAATGGAAAACTGCGTGT 58.961 39.130 0.00 0.00 0.00 4.49
36 37 5.206299 CGTAAAAATGGAAAACTGCGTGTA 58.794 37.500 0.00 0.00 0.00 2.90
37 38 5.114423 CGTAAAAATGGAAAACTGCGTGTAC 59.886 40.000 0.00 0.00 0.00 2.90
38 39 4.640789 AAAATGGAAAACTGCGTGTACA 57.359 36.364 0.00 0.00 0.00 2.90
39 40 3.619233 AATGGAAAACTGCGTGTACAC 57.381 42.857 16.32 16.32 0.00 2.90
40 41 2.319136 TGGAAAACTGCGTGTACACT 57.681 45.000 23.01 2.81 0.00 3.55
41 42 2.634600 TGGAAAACTGCGTGTACACTT 58.365 42.857 23.01 9.81 0.00 3.16
42 43 3.011119 TGGAAAACTGCGTGTACACTTT 58.989 40.909 23.01 15.68 0.00 2.66
43 44 3.064271 TGGAAAACTGCGTGTACACTTTC 59.936 43.478 23.01 21.79 0.00 2.62
44 45 3.277481 GAAAACTGCGTGTACACTTTCG 58.723 45.455 23.01 11.49 0.00 3.46
45 46 2.212869 AACTGCGTGTACACTTTCGA 57.787 45.000 23.01 2.34 0.00 3.71
46 47 2.212869 ACTGCGTGTACACTTTCGAA 57.787 45.000 23.01 4.30 0.00 3.71
47 48 2.750948 ACTGCGTGTACACTTTCGAAT 58.249 42.857 23.01 0.34 0.00 3.34
48 49 3.128349 ACTGCGTGTACACTTTCGAATT 58.872 40.909 23.01 0.00 0.00 2.17
49 50 3.558418 ACTGCGTGTACACTTTCGAATTT 59.442 39.130 23.01 0.00 0.00 1.82
50 51 4.034742 ACTGCGTGTACACTTTCGAATTTT 59.965 37.500 23.01 0.00 0.00 1.82
51 52 4.520078 TGCGTGTACACTTTCGAATTTTC 58.480 39.130 23.01 0.00 0.00 2.29
52 53 4.271533 TGCGTGTACACTTTCGAATTTTCT 59.728 37.500 23.01 0.00 0.00 2.52
53 54 5.202640 GCGTGTACACTTTCGAATTTTCTT 58.797 37.500 23.01 0.00 0.00 2.52
54 55 5.336209 GCGTGTACACTTTCGAATTTTCTTC 59.664 40.000 23.01 0.00 0.00 2.87
55 56 6.646636 CGTGTACACTTTCGAATTTTCTTCT 58.353 36.000 23.01 0.00 0.00 2.85
56 57 7.123830 CGTGTACACTTTCGAATTTTCTTCTT 58.876 34.615 23.01 0.00 0.00 2.52
57 58 7.638683 CGTGTACACTTTCGAATTTTCTTCTTT 59.361 33.333 23.01 0.00 0.00 2.52
58 59 9.285770 GTGTACACTTTCGAATTTTCTTCTTTT 57.714 29.630 18.92 0.00 0.00 2.27
59 60 9.284594 TGTACACTTTCGAATTTTCTTCTTTTG 57.715 29.630 0.00 0.00 0.00 2.44
60 61 9.498307 GTACACTTTCGAATTTTCTTCTTTTGA 57.502 29.630 0.00 0.00 0.00 2.69
61 62 8.620533 ACACTTTCGAATTTTCTTCTTTTGAG 57.379 30.769 0.00 0.00 0.00 3.02
62 63 8.458843 ACACTTTCGAATTTTCTTCTTTTGAGA 58.541 29.630 0.00 0.00 0.00 3.27
63 64 9.289303 CACTTTCGAATTTTCTTCTTTTGAGAA 57.711 29.630 0.00 0.00 0.00 2.87
66 67 8.713765 TTCGAATTTTCTTCTTTTGAGAATCG 57.286 30.769 0.00 0.00 38.61 3.34
67 68 6.797033 TCGAATTTTCTTCTTTTGAGAATCGC 59.203 34.615 0.00 0.00 38.61 4.58
68 69 6.578545 CGAATTTTCTTCTTTTGAGAATCGCA 59.421 34.615 0.00 0.00 38.61 5.10
69 70 7.201215 CGAATTTTCTTCTTTTGAGAATCGCAG 60.201 37.037 0.00 0.00 38.61 5.18
70 71 6.377327 TTTTCTTCTTTTGAGAATCGCAGT 57.623 33.333 0.00 0.00 38.61 4.40
71 72 7.490962 TTTTCTTCTTTTGAGAATCGCAGTA 57.509 32.000 0.00 0.00 38.61 2.74
72 73 6.467723 TTCTTCTTTTGAGAATCGCAGTAC 57.532 37.500 0.00 0.00 38.61 2.73
73 74 4.621460 TCTTCTTTTGAGAATCGCAGTACG 59.379 41.667 0.00 0.00 45.62 3.67
74 75 3.909430 TCTTTTGAGAATCGCAGTACGT 58.091 40.909 0.00 0.00 44.19 3.57
75 76 5.050644 TCTTTTGAGAATCGCAGTACGTA 57.949 39.130 0.00 0.00 44.19 3.57
76 77 5.647589 TCTTTTGAGAATCGCAGTACGTAT 58.352 37.500 0.00 0.00 44.19 3.06
77 78 5.515270 TCTTTTGAGAATCGCAGTACGTATG 59.485 40.000 0.00 0.00 44.19 2.39
78 79 4.365899 TTGAGAATCGCAGTACGTATGT 57.634 40.909 0.00 0.00 44.19 2.29
79 80 5.488645 TTGAGAATCGCAGTACGTATGTA 57.511 39.130 0.00 0.00 44.19 2.29
80 81 5.091910 TGAGAATCGCAGTACGTATGTAG 57.908 43.478 0.00 0.00 44.19 2.74
81 82 4.812626 TGAGAATCGCAGTACGTATGTAGA 59.187 41.667 0.00 0.00 44.19 2.59
82 83 5.093169 AGAATCGCAGTACGTATGTAGAC 57.907 43.478 0.00 0.00 44.19 2.59
83 84 8.400894 TGAGAATCGCAGTACGTATGTAGACG 62.401 46.154 0.00 0.00 43.59 4.18
84 85 1.004610 TCGCAGTACGTATGTAGACGC 60.005 52.381 0.00 0.00 46.87 5.19
85 86 1.004185 CGCAGTACGTATGTAGACGCT 60.004 52.381 0.00 0.00 46.87 5.07
86 87 2.637595 GCAGTACGTATGTAGACGCTC 58.362 52.381 0.00 0.00 46.87 5.03
87 88 2.031314 GCAGTACGTATGTAGACGCTCA 59.969 50.000 0.00 0.00 46.87 4.26
88 89 3.605406 CAGTACGTATGTAGACGCTCAC 58.395 50.000 0.00 0.00 46.87 3.51
89 90 2.283617 AGTACGTATGTAGACGCTCACG 59.716 50.000 0.00 0.00 46.87 4.35
90 91 1.362768 ACGTATGTAGACGCTCACGA 58.637 50.000 0.00 0.00 46.87 4.35
91 92 1.061711 ACGTATGTAGACGCTCACGAC 59.938 52.381 0.00 0.00 46.87 4.34
92 93 1.061566 CGTATGTAGACGCTCACGACA 59.938 52.381 0.00 0.00 43.93 4.35
93 94 2.438583 GTATGTAGACGCTCACGACAC 58.561 52.381 0.00 0.00 43.93 3.67
94 95 0.179197 ATGTAGACGCTCACGACACG 60.179 55.000 0.00 0.00 43.93 4.49
95 96 2.144680 GTAGACGCTCACGACACGC 61.145 63.158 0.00 0.00 43.93 5.34
96 97 2.609759 TAGACGCTCACGACACGCA 61.610 57.895 0.00 0.00 43.93 5.24
97 98 2.775359 TAGACGCTCACGACACGCAC 62.775 60.000 0.00 0.00 43.93 5.34
98 99 4.266070 ACGCTCACGACACGCACT 62.266 61.111 0.00 0.00 43.93 4.40
99 100 3.756677 CGCTCACGACACGCACTG 61.757 66.667 0.00 0.00 43.93 3.66
100 101 4.064491 GCTCACGACACGCACTGC 62.064 66.667 0.00 0.00 0.00 4.40
101 102 2.658268 CTCACGACACGCACTGCA 60.658 61.111 1.11 0.00 0.00 4.41
102 103 2.932083 CTCACGACACGCACTGCAC 61.932 63.158 1.11 0.00 0.00 4.57
103 104 2.961721 CACGACACGCACTGCACT 60.962 61.111 1.11 0.00 0.00 4.40
104 105 2.658593 ACGACACGCACTGCACTC 60.659 61.111 1.11 0.00 0.00 3.51
105 106 2.658268 CGACACGCACTGCACTCA 60.658 61.111 1.11 0.00 0.00 3.41
106 107 2.931386 GACACGCACTGCACTCAC 59.069 61.111 1.11 0.00 0.00 3.51
107 108 2.588877 ACACGCACTGCACTCACC 60.589 61.111 1.11 0.00 0.00 4.02
108 109 3.349006 CACGCACTGCACTCACCC 61.349 66.667 1.11 0.00 0.00 4.61
109 110 3.550431 ACGCACTGCACTCACCCT 61.550 61.111 1.11 0.00 0.00 4.34
110 111 2.281070 CGCACTGCACTCACCCTT 60.281 61.111 1.11 0.00 0.00 3.95
111 112 1.005037 CGCACTGCACTCACCCTTA 60.005 57.895 1.11 0.00 0.00 2.69
112 113 0.391661 CGCACTGCACTCACCCTTAT 60.392 55.000 1.11 0.00 0.00 1.73
113 114 1.134818 CGCACTGCACTCACCCTTATA 60.135 52.381 1.11 0.00 0.00 0.98
114 115 2.676750 CGCACTGCACTCACCCTTATAA 60.677 50.000 1.11 0.00 0.00 0.98
115 116 2.939103 GCACTGCACTCACCCTTATAAG 59.061 50.000 5.43 5.43 0.00 1.73
116 117 2.939103 CACTGCACTCACCCTTATAAGC 59.061 50.000 6.99 0.00 0.00 3.09
117 118 2.571653 ACTGCACTCACCCTTATAAGCA 59.428 45.455 6.99 0.00 0.00 3.91
118 119 2.939103 CTGCACTCACCCTTATAAGCAC 59.061 50.000 6.99 0.00 0.00 4.40
119 120 2.304470 TGCACTCACCCTTATAAGCACA 59.696 45.455 6.99 0.00 0.00 4.57
120 121 3.054434 TGCACTCACCCTTATAAGCACAT 60.054 43.478 6.99 0.00 0.00 3.21
121 122 3.313526 GCACTCACCCTTATAAGCACATG 59.686 47.826 6.99 0.00 0.00 3.21
122 123 3.313526 CACTCACCCTTATAAGCACATGC 59.686 47.826 6.99 0.00 42.49 4.06
123 124 3.054434 ACTCACCCTTATAAGCACATGCA 60.054 43.478 6.99 0.00 45.16 3.96
124 125 3.278574 TCACCCTTATAAGCACATGCAC 58.721 45.455 6.99 0.00 45.16 4.57
125 126 2.032054 CACCCTTATAAGCACATGCACG 59.968 50.000 6.99 0.00 45.16 5.34
126 127 2.288666 CCCTTATAAGCACATGCACGT 58.711 47.619 6.99 0.00 45.16 4.49
127 128 3.118555 ACCCTTATAAGCACATGCACGTA 60.119 43.478 6.99 0.00 45.16 3.57
128 129 3.874543 CCCTTATAAGCACATGCACGTAA 59.125 43.478 6.99 1.42 45.16 3.18
129 130 4.515191 CCCTTATAAGCACATGCACGTAAT 59.485 41.667 6.99 0.00 45.16 1.89
130 131 5.334105 CCCTTATAAGCACATGCACGTAATC 60.334 44.000 6.99 0.00 45.16 1.75
131 132 5.334105 CCTTATAAGCACATGCACGTAATCC 60.334 44.000 6.99 0.00 45.16 3.01
132 133 2.113860 AAGCACATGCACGTAATCCT 57.886 45.000 6.64 0.00 45.16 3.24
133 134 2.979814 AGCACATGCACGTAATCCTA 57.020 45.000 6.64 0.00 45.16 2.94
134 135 2.550978 AGCACATGCACGTAATCCTAC 58.449 47.619 6.64 0.00 45.16 3.18
135 136 1.597663 GCACATGCACGTAATCCTACC 59.402 52.381 0.00 0.00 41.59 3.18
136 137 2.210116 CACATGCACGTAATCCTACCC 58.790 52.381 0.00 0.00 0.00 3.69
137 138 1.140252 ACATGCACGTAATCCTACCCC 59.860 52.381 0.00 0.00 0.00 4.95
138 139 1.416401 CATGCACGTAATCCTACCCCT 59.584 52.381 0.00 0.00 0.00 4.79
139 140 1.575419 TGCACGTAATCCTACCCCTT 58.425 50.000 0.00 0.00 0.00 3.95
140 141 1.910671 TGCACGTAATCCTACCCCTTT 59.089 47.619 0.00 0.00 0.00 3.11
141 142 3.106054 TGCACGTAATCCTACCCCTTTA 58.894 45.455 0.00 0.00 0.00 1.85
142 143 3.518705 TGCACGTAATCCTACCCCTTTAA 59.481 43.478 0.00 0.00 0.00 1.52
143 144 4.124970 GCACGTAATCCTACCCCTTTAAG 58.875 47.826 0.00 0.00 0.00 1.85
144 145 4.124970 CACGTAATCCTACCCCTTTAAGC 58.875 47.826 0.00 0.00 0.00 3.09
145 146 3.776417 ACGTAATCCTACCCCTTTAAGCA 59.224 43.478 0.00 0.00 0.00 3.91
146 147 4.411212 ACGTAATCCTACCCCTTTAAGCAT 59.589 41.667 0.00 0.00 0.00 3.79
147 148 4.995487 CGTAATCCTACCCCTTTAAGCATC 59.005 45.833 0.00 0.00 0.00 3.91
148 149 5.221661 CGTAATCCTACCCCTTTAAGCATCT 60.222 44.000 0.00 0.00 0.00 2.90
149 150 4.984146 ATCCTACCCCTTTAAGCATCTC 57.016 45.455 0.00 0.00 0.00 2.75
150 151 3.046374 TCCTACCCCTTTAAGCATCTCC 58.954 50.000 0.00 0.00 0.00 3.71
151 152 2.777692 CCTACCCCTTTAAGCATCTCCA 59.222 50.000 0.00 0.00 0.00 3.86
152 153 3.202151 CCTACCCCTTTAAGCATCTCCAA 59.798 47.826 0.00 0.00 0.00 3.53
153 154 3.372440 ACCCCTTTAAGCATCTCCAAG 57.628 47.619 0.00 0.00 0.00 3.61
154 155 2.919602 ACCCCTTTAAGCATCTCCAAGA 59.080 45.455 0.00 0.00 0.00 3.02
155 156 3.054065 ACCCCTTTAAGCATCTCCAAGAG 60.054 47.826 0.00 0.00 0.00 2.85
156 157 3.200825 CCCCTTTAAGCATCTCCAAGAGA 59.799 47.826 0.00 0.00 43.20 3.10
157 158 4.324563 CCCCTTTAAGCATCTCCAAGAGAA 60.325 45.833 0.00 0.00 42.27 2.87
158 159 4.637977 CCCTTTAAGCATCTCCAAGAGAAC 59.362 45.833 0.00 0.00 42.27 3.01
159 160 4.331168 CCTTTAAGCATCTCCAAGAGAACG 59.669 45.833 0.00 0.00 42.27 3.95
160 161 4.801330 TTAAGCATCTCCAAGAGAACGA 57.199 40.909 0.00 0.00 42.27 3.85
161 162 2.957491 AGCATCTCCAAGAGAACGAG 57.043 50.000 0.00 0.00 42.27 4.18
162 163 1.134848 AGCATCTCCAAGAGAACGAGC 60.135 52.381 0.00 1.80 42.27 5.03
163 164 1.933247 CATCTCCAAGAGAACGAGCC 58.067 55.000 0.00 0.00 42.27 4.70
164 165 0.457851 ATCTCCAAGAGAACGAGCCG 59.542 55.000 0.00 0.00 42.27 5.52
165 166 1.153745 CTCCAAGAGAACGAGCCGG 60.154 63.158 0.00 0.00 0.00 6.13
166 167 1.595993 CTCCAAGAGAACGAGCCGGA 61.596 60.000 5.05 0.00 0.00 5.14
167 168 0.970937 TCCAAGAGAACGAGCCGGAT 60.971 55.000 5.05 0.00 0.00 4.18
168 169 0.744874 CCAAGAGAACGAGCCGGATA 59.255 55.000 5.05 0.00 0.00 2.59
169 170 1.136305 CCAAGAGAACGAGCCGGATAA 59.864 52.381 5.05 0.00 0.00 1.75
170 171 2.224066 CCAAGAGAACGAGCCGGATAAT 60.224 50.000 5.05 0.00 0.00 1.28
171 172 3.458189 CAAGAGAACGAGCCGGATAATT 58.542 45.455 5.05 0.00 0.00 1.40
172 173 3.099267 AGAGAACGAGCCGGATAATTG 57.901 47.619 5.05 0.00 0.00 2.32
173 174 2.431057 AGAGAACGAGCCGGATAATTGT 59.569 45.455 5.05 0.00 0.00 2.71
174 175 3.118738 AGAGAACGAGCCGGATAATTGTT 60.119 43.478 5.05 1.52 0.00 2.83
175 176 3.195661 AGAACGAGCCGGATAATTGTTC 58.804 45.455 5.05 11.94 37.53 3.18
176 177 2.684001 ACGAGCCGGATAATTGTTCA 57.316 45.000 5.05 0.00 0.00 3.18
177 178 2.277084 ACGAGCCGGATAATTGTTCAC 58.723 47.619 5.05 0.00 0.00 3.18
178 179 1.597663 CGAGCCGGATAATTGTTCACC 59.402 52.381 5.05 0.00 0.00 4.02
179 180 1.597663 GAGCCGGATAATTGTTCACCG 59.402 52.381 5.05 0.00 42.67 4.94
180 181 1.065709 AGCCGGATAATTGTTCACCGT 60.066 47.619 5.05 0.00 41.67 4.83
181 182 1.063469 GCCGGATAATTGTTCACCGTG 59.937 52.381 5.05 0.00 41.67 4.94
182 183 1.668751 CCGGATAATTGTTCACCGTGG 59.331 52.381 0.00 0.00 41.67 4.94
183 184 2.352388 CGGATAATTGTTCACCGTGGT 58.648 47.619 0.00 0.00 38.97 4.16
184 185 3.523547 CGGATAATTGTTCACCGTGGTA 58.476 45.455 0.00 0.00 38.97 3.25
185 186 3.933955 CGGATAATTGTTCACCGTGGTAA 59.066 43.478 0.00 0.00 38.97 2.85
186 187 4.573201 CGGATAATTGTTCACCGTGGTAAT 59.427 41.667 0.00 0.00 38.97 1.89
187 188 5.503357 CGGATAATTGTTCACCGTGGTAATG 60.503 44.000 0.00 0.00 38.97 1.90
188 189 5.355910 GGATAATTGTTCACCGTGGTAATGT 59.644 40.000 0.00 0.00 0.00 2.71
189 190 6.127842 GGATAATTGTTCACCGTGGTAATGTT 60.128 38.462 0.00 0.00 0.00 2.71
190 191 3.972950 TTGTTCACCGTGGTAATGTTG 57.027 42.857 0.00 0.00 0.00 3.33
191 192 1.604755 TGTTCACCGTGGTAATGTTGC 59.395 47.619 0.00 0.00 0.00 4.17
192 193 1.068816 GTTCACCGTGGTAATGTTGCC 60.069 52.381 0.00 0.00 0.00 4.52
193 194 0.108774 TCACCGTGGTAATGTTGCCA 59.891 50.000 0.00 0.00 40.79 4.92
201 202 4.592485 TGGTAATGTTGCCACGAAAATT 57.408 36.364 0.00 0.00 38.05 1.82
202 203 4.950050 TGGTAATGTTGCCACGAAAATTT 58.050 34.783 0.00 0.00 38.05 1.82
203 204 4.747108 TGGTAATGTTGCCACGAAAATTTG 59.253 37.500 0.00 0.00 38.05 2.32
204 205 4.747605 GGTAATGTTGCCACGAAAATTTGT 59.252 37.500 0.00 0.00 32.69 2.83
205 206 5.921408 GGTAATGTTGCCACGAAAATTTGTA 59.079 36.000 0.00 0.00 32.69 2.41
206 207 6.088883 GGTAATGTTGCCACGAAAATTTGTAG 59.911 38.462 0.00 0.00 32.69 2.74
207 208 4.902443 TGTTGCCACGAAAATTTGTAGA 57.098 36.364 0.00 0.00 0.00 2.59
208 209 4.854399 TGTTGCCACGAAAATTTGTAGAG 58.146 39.130 0.00 0.00 0.00 2.43
209 210 4.336993 TGTTGCCACGAAAATTTGTAGAGT 59.663 37.500 0.00 0.00 0.00 3.24
210 211 5.527951 TGTTGCCACGAAAATTTGTAGAGTA 59.472 36.000 0.00 0.00 0.00 2.59
211 212 5.600908 TGCCACGAAAATTTGTAGAGTAC 57.399 39.130 0.00 0.00 0.00 2.73
212 213 5.057819 TGCCACGAAAATTTGTAGAGTACA 58.942 37.500 0.00 0.00 36.79 2.90
213 214 5.703592 TGCCACGAAAATTTGTAGAGTACAT 59.296 36.000 0.00 0.00 38.68 2.29
214 215 6.128391 TGCCACGAAAATTTGTAGAGTACATC 60.128 38.462 0.00 0.00 38.68 3.06
215 216 6.674760 GCCACGAAAATTTGTAGAGTACATCC 60.675 42.308 0.00 0.00 38.68 3.51
216 217 6.370442 CCACGAAAATTTGTAGAGTACATCCA 59.630 38.462 0.00 0.00 38.68 3.41
217 218 7.065803 CCACGAAAATTTGTAGAGTACATCCAT 59.934 37.037 0.00 0.00 38.68 3.41
218 219 9.093970 CACGAAAATTTGTAGAGTACATCCATA 57.906 33.333 0.00 0.00 38.68 2.74
219 220 9.095065 ACGAAAATTTGTAGAGTACATCCATAC 57.905 33.333 0.00 0.00 38.68 2.39
220 221 9.314321 CGAAAATTTGTAGAGTACATCCATACT 57.686 33.333 0.00 0.00 38.68 2.12
226 227 7.997773 TGTAGAGTACATCCATACTACATCC 57.002 40.000 0.00 0.00 35.48 3.51
227 228 7.756614 TGTAGAGTACATCCATACTACATCCT 58.243 38.462 0.00 0.00 35.48 3.24
228 229 8.887393 TGTAGAGTACATCCATACTACATCCTA 58.113 37.037 0.00 0.00 35.48 2.94
229 230 9.165035 GTAGAGTACATCCATACTACATCCTAC 57.835 40.741 0.00 0.00 35.48 3.18
230 231 7.756614 AGAGTACATCCATACTACATCCTACA 58.243 38.462 0.00 0.00 35.48 2.74
231 232 8.225416 AGAGTACATCCATACTACATCCTACAA 58.775 37.037 0.00 0.00 35.48 2.41
232 233 8.958060 AGTACATCCATACTACATCCTACAAT 57.042 34.615 0.00 0.00 33.50 2.71
237 238 9.973450 CATCCATACTACATCCTACAATATAGC 57.027 37.037 0.00 0.00 0.00 2.97
238 239 9.944079 ATCCATACTACATCCTACAATATAGCT 57.056 33.333 0.00 0.00 0.00 3.32
239 240 9.409918 TCCATACTACATCCTACAATATAGCTC 57.590 37.037 0.00 0.00 0.00 4.09
240 241 9.415008 CCATACTACATCCTACAATATAGCTCT 57.585 37.037 0.00 0.00 0.00 4.09
242 243 9.983024 ATACTACATCCTACAATATAGCTCTGT 57.017 33.333 0.00 0.00 0.00 3.41
243 244 8.116651 ACTACATCCTACAATATAGCTCTGTG 57.883 38.462 0.00 0.00 0.00 3.66
244 245 7.945109 ACTACATCCTACAATATAGCTCTGTGA 59.055 37.037 0.00 0.00 0.00 3.58
245 246 7.789202 ACATCCTACAATATAGCTCTGTGAT 57.211 36.000 0.00 0.00 0.00 3.06
246 247 8.200024 ACATCCTACAATATAGCTCTGTGATT 57.800 34.615 0.00 0.00 0.00 2.57
247 248 8.654997 ACATCCTACAATATAGCTCTGTGATTT 58.345 33.333 0.00 0.00 0.00 2.17
248 249 9.499479 CATCCTACAATATAGCTCTGTGATTTT 57.501 33.333 0.00 0.00 0.00 1.82
249 250 9.717942 ATCCTACAATATAGCTCTGTGATTTTC 57.282 33.333 0.00 0.00 0.00 2.29
250 251 8.704668 TCCTACAATATAGCTCTGTGATTTTCA 58.295 33.333 0.00 0.00 0.00 2.69
251 252 9.499479 CCTACAATATAGCTCTGTGATTTTCAT 57.501 33.333 0.00 0.00 0.00 2.57
291 292 9.498176 TTGTAGAAGGTAACATAGTCTTTTTCC 57.502 33.333 0.00 0.00 41.41 3.13
292 293 8.098912 TGTAGAAGGTAACATAGTCTTTTTCCC 58.901 37.037 0.00 0.00 41.41 3.97
293 294 7.086685 AGAAGGTAACATAGTCTTTTTCCCA 57.913 36.000 0.00 0.00 41.41 4.37
294 295 7.168905 AGAAGGTAACATAGTCTTTTTCCCAG 58.831 38.462 0.00 0.00 41.41 4.45
295 296 6.697641 AGGTAACATAGTCTTTTTCCCAGA 57.302 37.500 0.00 0.00 41.41 3.86
296 297 6.473758 AGGTAACATAGTCTTTTTCCCAGAC 58.526 40.000 0.00 0.00 39.46 3.51
297 298 6.272558 AGGTAACATAGTCTTTTTCCCAGACT 59.727 38.462 7.68 7.68 46.49 3.24
304 305 5.593183 GTCTTTTTCCCAGACTAAGTTCG 57.407 43.478 0.00 0.00 38.14 3.95
305 306 5.295152 GTCTTTTTCCCAGACTAAGTTCGA 58.705 41.667 0.00 0.00 38.14 3.71
306 307 5.177142 GTCTTTTTCCCAGACTAAGTTCGAC 59.823 44.000 0.00 0.00 38.14 4.20
307 308 4.950205 TTTTCCCAGACTAAGTTCGACT 57.050 40.909 0.00 0.00 0.00 4.18
308 309 6.266103 TCTTTTTCCCAGACTAAGTTCGACTA 59.734 38.462 0.00 0.00 0.00 2.59
309 310 6.409524 TTTTCCCAGACTAAGTTCGACTAA 57.590 37.500 0.00 0.00 0.00 2.24
310 311 5.640189 TTCCCAGACTAAGTTCGACTAAG 57.360 43.478 0.00 0.00 0.00 2.18
311 312 4.914983 TCCCAGACTAAGTTCGACTAAGA 58.085 43.478 0.00 0.00 0.00 2.10
312 313 4.942483 TCCCAGACTAAGTTCGACTAAGAG 59.058 45.833 0.00 0.00 0.00 2.85
313 314 4.096682 CCCAGACTAAGTTCGACTAAGAGG 59.903 50.000 0.00 0.00 0.00 3.69
314 315 4.942483 CCAGACTAAGTTCGACTAAGAGGA 59.058 45.833 0.00 0.00 0.00 3.71
315 316 5.591067 CCAGACTAAGTTCGACTAAGAGGAT 59.409 44.000 0.00 0.00 0.00 3.24
316 317 6.095720 CCAGACTAAGTTCGACTAAGAGGATT 59.904 42.308 0.00 0.00 0.00 3.01
317 318 7.282675 CCAGACTAAGTTCGACTAAGAGGATTA 59.717 40.741 0.00 0.00 0.00 1.75
318 319 8.124199 CAGACTAAGTTCGACTAAGAGGATTAC 58.876 40.741 0.00 0.00 0.00 1.89
319 320 7.828223 AGACTAAGTTCGACTAAGAGGATTACA 59.172 37.037 0.00 0.00 0.00 2.41
320 321 7.760437 ACTAAGTTCGACTAAGAGGATTACAC 58.240 38.462 0.00 0.00 0.00 2.90
321 322 6.585695 AAGTTCGACTAAGAGGATTACACA 57.414 37.500 0.00 0.00 0.00 3.72
322 323 6.777213 AGTTCGACTAAGAGGATTACACAT 57.223 37.500 0.00 0.00 0.00 3.21
323 324 7.171630 AGTTCGACTAAGAGGATTACACATT 57.828 36.000 0.00 0.00 0.00 2.71
324 325 8.289939 AGTTCGACTAAGAGGATTACACATTA 57.710 34.615 0.00 0.00 0.00 1.90
325 326 8.189460 AGTTCGACTAAGAGGATTACACATTAC 58.811 37.037 0.00 0.00 0.00 1.89
326 327 7.876936 TCGACTAAGAGGATTACACATTACT 57.123 36.000 0.00 0.00 0.00 2.24
327 328 8.289939 TCGACTAAGAGGATTACACATTACTT 57.710 34.615 0.00 0.00 0.00 2.24
328 329 8.188799 TCGACTAAGAGGATTACACATTACTTG 58.811 37.037 0.00 0.00 0.00 3.16
329 330 8.188799 CGACTAAGAGGATTACACATTACTTGA 58.811 37.037 0.00 0.00 0.00 3.02
330 331 9.303537 GACTAAGAGGATTACACATTACTTGAC 57.696 37.037 0.00 0.00 0.00 3.18
331 332 9.036980 ACTAAGAGGATTACACATTACTTGACT 57.963 33.333 0.00 0.00 0.00 3.41
332 333 9.307121 CTAAGAGGATTACACATTACTTGACTG 57.693 37.037 0.00 0.00 0.00 3.51
333 334 6.644347 AGAGGATTACACATTACTTGACTGG 58.356 40.000 0.00 0.00 0.00 4.00
334 335 6.440647 AGAGGATTACACATTACTTGACTGGA 59.559 38.462 0.00 0.00 0.00 3.86
335 336 7.126421 AGAGGATTACACATTACTTGACTGGAT 59.874 37.037 0.00 0.00 0.00 3.41
336 337 7.633789 AGGATTACACATTACTTGACTGGATT 58.366 34.615 0.00 0.00 0.00 3.01
337 338 7.770897 AGGATTACACATTACTTGACTGGATTC 59.229 37.037 0.00 0.00 0.00 2.52
338 339 6.961359 TTACACATTACTTGACTGGATTCG 57.039 37.500 0.00 0.00 0.00 3.34
339 340 5.147330 ACACATTACTTGACTGGATTCGA 57.853 39.130 0.00 0.00 0.00 3.71
340 341 5.734720 ACACATTACTTGACTGGATTCGAT 58.265 37.500 0.00 0.00 0.00 3.59
341 342 5.812642 ACACATTACTTGACTGGATTCGATC 59.187 40.000 0.00 0.00 0.00 3.69
342 343 5.812127 CACATTACTTGACTGGATTCGATCA 59.188 40.000 0.00 0.00 0.00 2.92
343 344 6.481313 CACATTACTTGACTGGATTCGATCAT 59.519 38.462 0.00 0.00 0.00 2.45
344 345 6.703607 ACATTACTTGACTGGATTCGATCATC 59.296 38.462 0.00 0.00 0.00 2.92
345 346 4.743057 ACTTGACTGGATTCGATCATCA 57.257 40.909 0.00 0.00 0.00 3.07
346 347 5.287674 ACTTGACTGGATTCGATCATCAT 57.712 39.130 0.00 0.00 0.00 2.45
347 348 6.410942 ACTTGACTGGATTCGATCATCATA 57.589 37.500 0.00 0.00 0.00 2.15
348 349 6.453943 ACTTGACTGGATTCGATCATCATAG 58.546 40.000 0.00 0.70 0.00 2.23
349 350 5.397142 TGACTGGATTCGATCATCATAGG 57.603 43.478 0.00 0.00 0.00 2.57
350 351 5.079643 TGACTGGATTCGATCATCATAGGA 58.920 41.667 0.00 0.00 0.00 2.94
351 352 5.047731 TGACTGGATTCGATCATCATAGGAC 60.048 44.000 0.00 0.00 0.00 3.85
352 353 4.221703 ACTGGATTCGATCATCATAGGACC 59.778 45.833 0.00 0.00 0.00 4.46
353 354 4.420206 TGGATTCGATCATCATAGGACCT 58.580 43.478 0.00 0.00 0.00 3.85
354 355 5.580022 TGGATTCGATCATCATAGGACCTA 58.420 41.667 3.00 3.00 0.00 3.08
355 356 5.654209 TGGATTCGATCATCATAGGACCTAG 59.346 44.000 7.43 0.00 0.00 3.02
356 357 5.888724 GGATTCGATCATCATAGGACCTAGA 59.111 44.000 7.43 5.39 0.00 2.43
357 358 6.549364 GGATTCGATCATCATAGGACCTAGAT 59.451 42.308 7.43 4.15 0.00 1.98
358 359 7.069331 GGATTCGATCATCATAGGACCTAGATT 59.931 40.741 7.43 0.00 0.00 2.40
359 360 7.397892 TTCGATCATCATAGGACCTAGATTC 57.602 40.000 7.43 5.38 0.00 2.52
360 361 6.485171 TCGATCATCATAGGACCTAGATTCA 58.515 40.000 7.43 1.06 0.00 2.57
361 362 6.601217 TCGATCATCATAGGACCTAGATTCAG 59.399 42.308 7.43 1.68 0.00 3.02
362 363 6.601217 CGATCATCATAGGACCTAGATTCAGA 59.399 42.308 7.43 5.12 0.00 3.27
363 364 7.285172 CGATCATCATAGGACCTAGATTCAGAT 59.715 40.741 7.43 8.83 0.00 2.90
364 365 8.914213 ATCATCATAGGACCTAGATTCAGATT 57.086 34.615 7.43 0.00 0.00 2.40
365 366 8.131847 TCATCATAGGACCTAGATTCAGATTG 57.868 38.462 7.43 0.00 0.00 2.67
366 367 7.952368 TCATCATAGGACCTAGATTCAGATTGA 59.048 37.037 7.43 2.98 0.00 2.57
367 368 8.760735 CATCATAGGACCTAGATTCAGATTGAT 58.239 37.037 7.43 5.18 0.00 2.57
368 369 8.733092 TCATAGGACCTAGATTCAGATTGATT 57.267 34.615 7.43 0.00 0.00 2.57
369 370 9.163894 TCATAGGACCTAGATTCAGATTGATTT 57.836 33.333 7.43 0.00 0.00 2.17
415 416 7.520798 AGATTCATCTAATTACCTGCATTCCA 58.479 34.615 0.00 0.00 34.85 3.53
449 450 3.969553 AGGGCTTAAAAGTCAAGATCCC 58.030 45.455 0.00 0.00 30.55 3.85
450 451 3.593780 AGGGCTTAAAAGTCAAGATCCCT 59.406 43.478 0.00 0.00 33.31 4.20
455 456 6.828785 GGCTTAAAAGTCAAGATCCCTATGAA 59.171 38.462 0.00 0.00 0.00 2.57
456 457 7.339466 GGCTTAAAAGTCAAGATCCCTATGAAA 59.661 37.037 0.00 0.00 0.00 2.69
460 461 3.452627 AGTCAAGATCCCTATGAAACGCT 59.547 43.478 0.00 0.00 0.00 5.07
469 470 2.817258 CCTATGAAACGCTGAAAACCCA 59.183 45.455 0.00 0.00 0.00 4.51
470 471 3.119849 CCTATGAAACGCTGAAAACCCAG 60.120 47.826 0.00 0.00 37.23 4.45
473 474 1.001706 GAAACGCTGAAAACCCAGTCC 60.002 52.381 0.00 0.00 36.57 3.85
483 484 1.772819 AACCCAGTCCCTGCACTCAG 61.773 60.000 0.00 0.00 40.02 3.35
503 504 2.906389 AGAACCACAATGCTGAGTAGGA 59.094 45.455 0.00 0.00 0.00 2.94
519 520 2.363306 AGGACAACACATTTGCCTCA 57.637 45.000 0.00 0.00 0.00 3.86
522 523 2.297033 GGACAACACATTTGCCTCATGT 59.703 45.455 0.00 0.00 35.10 3.21
523 524 3.568538 GACAACACATTTGCCTCATGTC 58.431 45.455 0.00 0.00 32.25 3.06
525 526 3.254166 ACAACACATTTGCCTCATGTCTC 59.746 43.478 0.00 0.00 32.25 3.36
527 528 2.040813 ACACATTTGCCTCATGTCTCCT 59.959 45.455 0.00 0.00 32.25 3.69
534 536 4.038271 TGCCTCATGTCTCCTTTTCATT 57.962 40.909 0.00 0.00 0.00 2.57
541 543 5.415701 TCATGTCTCCTTTTCATTGCTTACC 59.584 40.000 0.00 0.00 0.00 2.85
545 547 6.323739 TGTCTCCTTTTCATTGCTTACCTTTT 59.676 34.615 0.00 0.00 0.00 2.27
550 552 6.202762 CCTTTTCATTGCTTACCTTTTTGACC 59.797 38.462 0.00 0.00 0.00 4.02
570 572 9.748708 TTTGACCAAATTCAGATAACTTTCTTG 57.251 29.630 0.00 0.00 0.00 3.02
574 576 7.869429 ACCAAATTCAGATAACTTTCTTGCTTG 59.131 33.333 0.00 0.00 0.00 4.01
577 579 5.869753 TCAGATAACTTTCTTGCTTGCTC 57.130 39.130 0.00 0.00 0.00 4.26
578 580 4.697352 TCAGATAACTTTCTTGCTTGCTCC 59.303 41.667 0.00 0.00 0.00 4.70
579 581 4.699257 CAGATAACTTTCTTGCTTGCTCCT 59.301 41.667 0.00 0.00 0.00 3.69
580 582 5.182760 CAGATAACTTTCTTGCTTGCTCCTT 59.817 40.000 0.00 0.00 0.00 3.36
581 583 3.998099 AACTTTCTTGCTTGCTCCTTC 57.002 42.857 0.00 0.00 0.00 3.46
582 584 2.234143 ACTTTCTTGCTTGCTCCTTCC 58.766 47.619 0.00 0.00 0.00 3.46
583 585 2.158549 ACTTTCTTGCTTGCTCCTTCCT 60.159 45.455 0.00 0.00 0.00 3.36
584 586 2.664402 TTCTTGCTTGCTCCTTCCTT 57.336 45.000 0.00 0.00 0.00 3.36
585 587 2.191128 TCTTGCTTGCTCCTTCCTTC 57.809 50.000 0.00 0.00 0.00 3.46
586 588 1.172175 CTTGCTTGCTCCTTCCTTCC 58.828 55.000 0.00 0.00 0.00 3.46
614 616 5.407407 TCCTTCAGGAATGTTCAGTACTC 57.593 43.478 0.00 0.00 42.18 2.59
615 617 4.223032 TCCTTCAGGAATGTTCAGTACTCC 59.777 45.833 0.00 0.00 42.18 3.85
616 618 4.020218 CCTTCAGGAATGTTCAGTACTCCA 60.020 45.833 0.00 0.00 37.39 3.86
618 620 3.260884 TCAGGAATGTTCAGTACTCCACC 59.739 47.826 0.00 0.00 0.00 4.61
619 621 3.007940 CAGGAATGTTCAGTACTCCACCA 59.992 47.826 0.00 0.00 0.00 4.17
620 622 3.846588 AGGAATGTTCAGTACTCCACCAT 59.153 43.478 0.00 0.00 0.00 3.55
621 623 4.289672 AGGAATGTTCAGTACTCCACCATT 59.710 41.667 0.00 0.00 0.00 3.16
622 624 4.636206 GGAATGTTCAGTACTCCACCATTC 59.364 45.833 17.60 17.60 37.20 2.67
623 625 4.908601 ATGTTCAGTACTCCACCATTCA 57.091 40.909 0.00 0.00 0.00 2.57
624 626 4.271696 TGTTCAGTACTCCACCATTCAG 57.728 45.455 0.00 0.00 0.00 3.02
625 627 3.901222 TGTTCAGTACTCCACCATTCAGA 59.099 43.478 0.00 0.00 0.00 3.27
626 628 4.346709 TGTTCAGTACTCCACCATTCAGAA 59.653 41.667 0.00 0.00 0.00 3.02
627 629 5.163248 TGTTCAGTACTCCACCATTCAGAAA 60.163 40.000 0.00 0.00 0.00 2.52
628 630 4.894784 TCAGTACTCCACCATTCAGAAAC 58.105 43.478 0.00 0.00 0.00 2.78
629 631 4.593206 TCAGTACTCCACCATTCAGAAACT 59.407 41.667 0.00 0.00 0.00 2.66
630 632 5.071788 TCAGTACTCCACCATTCAGAAACTT 59.928 40.000 0.00 0.00 0.00 2.66
631 633 5.180117 CAGTACTCCACCATTCAGAAACTTG 59.820 44.000 0.00 0.00 0.00 3.16
632 634 3.490348 ACTCCACCATTCAGAAACTTGG 58.510 45.455 0.32 0.32 35.31 3.61
633 635 3.117512 ACTCCACCATTCAGAAACTTGGT 60.118 43.478 1.53 1.53 43.14 3.67
634 636 3.891366 CTCCACCATTCAGAAACTTGGTT 59.109 43.478 4.40 0.00 40.44 3.67
635 637 5.055265 TCCACCATTCAGAAACTTGGTTA 57.945 39.130 4.40 0.00 40.44 2.85
636 638 5.640147 TCCACCATTCAGAAACTTGGTTAT 58.360 37.500 4.40 0.00 40.44 1.89
637 639 5.710099 TCCACCATTCAGAAACTTGGTTATC 59.290 40.000 4.40 0.00 40.44 1.75
638 640 5.476599 CCACCATTCAGAAACTTGGTTATCA 59.523 40.000 4.40 0.00 40.44 2.15
639 641 6.015519 CCACCATTCAGAAACTTGGTTATCAA 60.016 38.462 4.40 0.00 40.44 2.57
640 642 6.863126 CACCATTCAGAAACTTGGTTATCAAC 59.137 38.462 4.40 0.00 40.44 3.18
666 668 8.489489 CCATGTACTATAAAGGCATCATAGGAT 58.511 37.037 0.00 0.00 0.00 3.24
727 729 3.261643 CCATCCAAGCTAAAAAGGCCTTT 59.738 43.478 25.47 25.47 0.00 3.11
735 737 6.918067 AGCTAAAAAGGCCTTTAAAGTCAT 57.082 33.333 30.59 10.87 31.63 3.06
736 738 6.691508 AGCTAAAAAGGCCTTTAAAGTCATG 58.308 36.000 30.59 15.02 31.63 3.07
754 756 1.452540 TGATCCCCATGATGGCTGAT 58.547 50.000 5.79 10.03 35.79 2.90
755 757 1.074889 TGATCCCCATGATGGCTGATG 59.925 52.381 16.36 0.00 35.79 3.07
756 758 1.353358 GATCCCCATGATGGCTGATGA 59.647 52.381 16.36 4.46 35.79 2.92
764 766 5.074804 CCATGATGGCTGATGAAAATCCTA 58.925 41.667 0.00 0.00 0.00 2.94
782 784 0.847373 TACCCCTGCACTCAAAACCA 59.153 50.000 0.00 0.00 0.00 3.67
787 789 1.342174 CCTGCACTCAAAACCAATGCT 59.658 47.619 0.00 0.00 37.20 3.79
788 790 2.400399 CTGCACTCAAAACCAATGCTG 58.600 47.619 0.00 0.00 37.20 4.41
789 791 2.030371 TGCACTCAAAACCAATGCTGA 58.970 42.857 0.00 0.00 37.20 4.26
790 792 2.034939 TGCACTCAAAACCAATGCTGAG 59.965 45.455 0.00 0.00 40.92 3.35
792 794 3.996150 ACTCAAAACCAATGCTGAGTG 57.004 42.857 2.91 0.00 45.18 3.51
817 819 1.747444 AGGACACACATTTCCCTCCT 58.253 50.000 0.00 0.00 31.51 3.69
835 837 2.379907 TCCTCTTTCCTTTCCATTGCCT 59.620 45.455 0.00 0.00 0.00 4.75
845 847 2.978156 TCCATTGCCTCCTTTTCTGT 57.022 45.000 0.00 0.00 0.00 3.41
925 927 0.179936 CAACATGGCTCTCTCTCCCC 59.820 60.000 0.00 0.00 0.00 4.81
931 933 1.618030 GCTCTCTCTCCCCCTCTCA 59.382 63.158 0.00 0.00 0.00 3.27
1062 1070 1.664017 CAGAGAGATCCATGGCGCG 60.664 63.158 6.96 0.00 0.00 6.86
1133 1141 0.540923 GAGAGGCAGCAGATCAAGGT 59.459 55.000 0.00 0.00 0.00 3.50
1247 1258 1.475213 GGGCATAACAGGTAGGCAGAC 60.475 57.143 4.19 0.00 41.39 3.51
1248 1259 1.486726 GGCATAACAGGTAGGCAGACT 59.513 52.381 4.19 0.00 41.39 3.24
1249 1260 2.555199 GCATAACAGGTAGGCAGACTG 58.445 52.381 0.00 0.00 39.36 3.51
1250 1261 2.743183 GCATAACAGGTAGGCAGACTGG 60.743 54.545 4.26 0.00 39.36 4.00
1251 1262 0.902531 TAACAGGTAGGCAGACTGGC 59.097 55.000 20.87 20.87 44.10 4.85
1252 1263 1.127567 AACAGGTAGGCAGACTGGCA 61.128 55.000 28.64 13.37 46.46 4.92
1253 1264 1.220206 CAGGTAGGCAGACTGGCAG 59.780 63.158 28.64 14.16 46.46 4.85
1254 1265 1.079256 AGGTAGGCAGACTGGCAGA 59.921 57.895 28.64 14.72 46.46 4.26
1550 1571 0.460284 GTATGTCTGCCCTGTCCACG 60.460 60.000 0.00 0.00 0.00 4.94
1590 1611 5.126384 TGGTTTCAGTCATTTTTCTTCCGTT 59.874 36.000 0.00 0.00 0.00 4.44
1596 1617 6.204108 TCAGTCATTTTTCTTCCGTTTCTACC 59.796 38.462 0.00 0.00 0.00 3.18
1598 1619 6.204882 AGTCATTTTTCTTCCGTTTCTACCTG 59.795 38.462 0.00 0.00 0.00 4.00
1629 1650 0.536460 TCACTCCTTTGCCGGGTTTC 60.536 55.000 2.18 0.00 0.00 2.78
1641 1662 2.841317 GGTTTCCCCCTCGTGGTT 59.159 61.111 2.33 0.00 0.00 3.67
1642 1663 1.303074 GGTTTCCCCCTCGTGGTTC 60.303 63.158 2.33 0.00 0.00 3.62
1750 1771 1.372128 GTACGACGCCAAGAACGGT 60.372 57.895 0.00 0.00 34.00 4.83
1846 1867 1.081892 CGCTCTGCAGTTACAAGCAT 58.918 50.000 20.46 0.00 40.42 3.79
1889 1910 4.501229 CCAAAGTAAGCAAACTCAATGGCA 60.501 41.667 0.00 0.00 0.00 4.92
1890 1911 4.510038 AAGTAAGCAAACTCAATGGCAG 57.490 40.909 0.00 0.00 0.00 4.85
1891 1912 3.490348 AGTAAGCAAACTCAATGGCAGT 58.510 40.909 0.00 0.00 0.00 4.40
1893 1914 2.283145 AGCAAACTCAATGGCAGTCT 57.717 45.000 0.00 0.00 0.00 3.24
1894 1915 2.157738 AGCAAACTCAATGGCAGTCTC 58.842 47.619 0.00 0.00 0.00 3.36
1895 1916 2.157738 GCAAACTCAATGGCAGTCTCT 58.842 47.619 0.00 0.00 0.00 3.10
1897 1918 3.405831 CAAACTCAATGGCAGTCTCTGA 58.594 45.455 0.00 0.00 32.44 3.27
1898 1919 3.777106 AACTCAATGGCAGTCTCTGAA 57.223 42.857 0.00 0.00 32.44 3.02
1899 1920 3.996921 ACTCAATGGCAGTCTCTGAAT 57.003 42.857 0.00 0.00 32.44 2.57
1901 1922 3.008813 ACTCAATGGCAGTCTCTGAATGT 59.991 43.478 0.00 0.00 32.44 2.71
1902 1923 3.340928 TCAATGGCAGTCTCTGAATGTG 58.659 45.455 0.00 0.00 32.44 3.21
1903 1924 3.008266 TCAATGGCAGTCTCTGAATGTGA 59.992 43.478 0.00 0.00 32.44 3.58
1904 1925 3.708403 ATGGCAGTCTCTGAATGTGAA 57.292 42.857 0.00 0.00 32.44 3.18
1982 2042 5.637387 GGTGATTTTGAAGAGTCTCTGAGAC 59.363 44.000 26.43 26.43 45.38 3.36
2004 2064 5.027206 CTTGTTGTCAAGTGCATCTACAG 57.973 43.478 0.00 0.00 44.09 2.74
2041 2101 5.438761 ACTGCAAGGTGAATAACAGAAAC 57.561 39.130 0.00 0.00 39.30 2.78
2051 2111 3.542712 ATAACAGAAACGCAAGCAGTG 57.457 42.857 0.00 0.00 45.62 3.66
2246 2306 6.158023 TCAAGAGTAACTTCGGAAAGAACT 57.842 37.500 0.00 0.00 36.61 3.01
2305 2365 7.227512 AGTGATTACAGAGAGTTTCTTTGGTTG 59.772 37.037 2.31 0.00 33.35 3.77
2400 2460 0.803117 CATGAAGAGTGGCAGCAGTG 59.197 55.000 0.00 0.00 0.00 3.66
2445 2505 7.446625 GGATTAGGTGAGAACATGCTATCATTT 59.553 37.037 0.00 0.00 0.00 2.32
2452 2512 9.481340 GTGAGAACATGCTATCATTTATCTGTA 57.519 33.333 0.00 0.00 0.00 2.74
2557 2617 9.625747 CTGCAGAGGAGTATATAATCTCAGATA 57.374 37.037 8.42 0.00 32.93 1.98
2702 2762 3.058450 CTCATGTCGGATTCTCTGCATC 58.942 50.000 0.00 0.00 0.00 3.91
2715 2775 8.411683 GGATTCTCTGCATCAAGAACAATATTT 58.588 33.333 8.09 0.00 34.52 1.40
2742 2802 3.681417 ACGGAATAGTTACGTCTTTTGGC 59.319 43.478 0.00 0.00 35.77 4.52
2782 2842 0.670546 ACGACCGGAGAAGTGCATTG 60.671 55.000 9.46 0.00 0.00 2.82
2858 2918 6.727824 TCATCAAGCTTAAACAACTCTAGC 57.272 37.500 0.00 0.00 0.00 3.42
2880 2940 3.282885 GCAACTCCCTATTCAGGAAAGG 58.717 50.000 0.00 0.00 45.91 3.11
3072 3132 1.069227 CCGTCAACTGTAAAGCAAGCC 60.069 52.381 0.00 0.00 0.00 4.35
3337 3399 3.118454 CTACCGCCCTTGCACACG 61.118 66.667 0.00 0.00 37.32 4.49
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
1 2 3.236816 CATTTTTACGCCACAGAAGCAG 58.763 45.455 0.00 0.00 0.00 4.24
2 3 2.030363 CCATTTTTACGCCACAGAAGCA 60.030 45.455 0.00 0.00 0.00 3.91
3 4 2.227865 TCCATTTTTACGCCACAGAAGC 59.772 45.455 0.00 0.00 0.00 3.86
4 5 4.497473 TTCCATTTTTACGCCACAGAAG 57.503 40.909 0.00 0.00 0.00 2.85
5 6 4.920640 TTTCCATTTTTACGCCACAGAA 57.079 36.364 0.00 0.00 0.00 3.02
6 7 4.339814 AGTTTTCCATTTTTACGCCACAGA 59.660 37.500 0.00 0.00 0.00 3.41
7 8 4.444056 CAGTTTTCCATTTTTACGCCACAG 59.556 41.667 0.00 0.00 0.00 3.66
8 9 4.363999 CAGTTTTCCATTTTTACGCCACA 58.636 39.130 0.00 0.00 0.00 4.17
9 10 3.183574 GCAGTTTTCCATTTTTACGCCAC 59.816 43.478 0.00 0.00 0.00 5.01
10 11 3.385577 GCAGTTTTCCATTTTTACGCCA 58.614 40.909 0.00 0.00 0.00 5.69
11 12 2.407026 CGCAGTTTTCCATTTTTACGCC 59.593 45.455 0.00 0.00 0.00 5.68
12 13 3.047093 ACGCAGTTTTCCATTTTTACGC 58.953 40.909 0.00 0.00 37.78 4.42
13 14 4.039032 ACACGCAGTTTTCCATTTTTACG 58.961 39.130 0.00 0.00 41.61 3.18
14 15 5.972382 TGTACACGCAGTTTTCCATTTTTAC 59.028 36.000 0.00 0.00 41.61 2.01
15 16 5.972382 GTGTACACGCAGTTTTCCATTTTTA 59.028 36.000 10.84 0.00 41.61 1.52
16 17 4.801516 GTGTACACGCAGTTTTCCATTTTT 59.198 37.500 10.84 0.00 41.61 1.94
17 18 4.097286 AGTGTACACGCAGTTTTCCATTTT 59.903 37.500 19.93 0.00 41.61 1.82
18 19 3.630312 AGTGTACACGCAGTTTTCCATTT 59.370 39.130 19.93 0.00 41.61 2.32
19 20 3.211045 AGTGTACACGCAGTTTTCCATT 58.789 40.909 19.93 0.00 41.61 3.16
20 21 2.846193 AGTGTACACGCAGTTTTCCAT 58.154 42.857 19.93 0.00 41.61 3.41
21 22 2.319136 AGTGTACACGCAGTTTTCCA 57.681 45.000 19.93 0.00 41.61 3.53
22 23 3.614588 GAAAGTGTACACGCAGTTTTCC 58.385 45.455 19.93 6.03 41.61 3.13
23 24 3.000523 TCGAAAGTGTACACGCAGTTTTC 59.999 43.478 19.93 19.91 41.61 2.29
24 25 2.931325 TCGAAAGTGTACACGCAGTTTT 59.069 40.909 19.93 14.10 41.61 2.43
25 26 2.542597 TCGAAAGTGTACACGCAGTTT 58.457 42.857 19.93 14.45 41.61 2.66
26 27 2.212869 TCGAAAGTGTACACGCAGTT 57.787 45.000 19.93 12.62 41.61 3.16
28 29 3.788434 AATTCGAAAGTGTACACGCAG 57.212 42.857 19.93 12.73 36.20 5.18
29 30 4.271533 AGAAAATTCGAAAGTGTACACGCA 59.728 37.500 19.93 0.00 36.20 5.24
30 31 4.769215 AGAAAATTCGAAAGTGTACACGC 58.231 39.130 19.93 12.44 36.20 5.34
31 32 6.646636 AGAAGAAAATTCGAAAGTGTACACG 58.353 36.000 19.93 8.75 36.20 4.49
32 33 8.836959 AAAGAAGAAAATTCGAAAGTGTACAC 57.163 30.769 18.56 18.56 0.00 2.90
33 34 9.284594 CAAAAGAAGAAAATTCGAAAGTGTACA 57.715 29.630 0.00 0.00 0.00 2.90
34 35 9.498307 TCAAAAGAAGAAAATTCGAAAGTGTAC 57.502 29.630 0.00 0.00 0.00 2.90
35 36 9.716507 CTCAAAAGAAGAAAATTCGAAAGTGTA 57.283 29.630 0.00 0.00 0.00 2.90
36 37 8.458843 TCTCAAAAGAAGAAAATTCGAAAGTGT 58.541 29.630 0.00 0.00 0.00 3.55
37 38 8.841444 TCTCAAAAGAAGAAAATTCGAAAGTG 57.159 30.769 0.00 0.00 0.00 3.16
40 41 9.169468 CGATTCTCAAAAGAAGAAAATTCGAAA 57.831 29.630 0.00 0.00 44.53 3.46
41 42 7.323656 GCGATTCTCAAAAGAAGAAAATTCGAA 59.676 33.333 0.00 0.00 44.53 3.71
42 43 6.797033 GCGATTCTCAAAAGAAGAAAATTCGA 59.203 34.615 10.04 0.00 44.53 3.71
43 44 6.578545 TGCGATTCTCAAAAGAAGAAAATTCG 59.421 34.615 0.00 0.00 44.53 3.34
44 45 7.592903 ACTGCGATTCTCAAAAGAAGAAAATTC 59.407 33.333 0.00 0.00 44.53 2.17
45 46 7.428826 ACTGCGATTCTCAAAAGAAGAAAATT 58.571 30.769 0.00 0.00 44.53 1.82
46 47 6.974965 ACTGCGATTCTCAAAAGAAGAAAAT 58.025 32.000 0.00 0.00 44.53 1.82
47 48 6.377327 ACTGCGATTCTCAAAAGAAGAAAA 57.623 33.333 0.00 0.00 44.53 2.29
48 49 6.346598 CGTACTGCGATTCTCAAAAGAAGAAA 60.347 38.462 0.00 0.00 44.53 2.52
49 50 5.118664 CGTACTGCGATTCTCAAAAGAAGAA 59.881 40.000 0.00 0.00 44.53 2.52
50 51 4.621460 CGTACTGCGATTCTCAAAAGAAGA 59.379 41.667 0.00 0.00 44.53 2.87
51 52 4.386049 ACGTACTGCGATTCTCAAAAGAAG 59.614 41.667 0.00 0.00 43.31 2.85
52 53 4.304110 ACGTACTGCGATTCTCAAAAGAA 58.696 39.130 0.00 0.00 43.77 2.52
53 54 3.909430 ACGTACTGCGATTCTCAAAAGA 58.091 40.909 0.00 0.00 44.77 2.52
54 55 5.288712 ACATACGTACTGCGATTCTCAAAAG 59.711 40.000 0.00 0.00 44.77 2.27
55 56 5.165676 ACATACGTACTGCGATTCTCAAAA 58.834 37.500 0.00 0.00 44.77 2.44
56 57 4.740268 ACATACGTACTGCGATTCTCAAA 58.260 39.130 0.00 0.00 44.77 2.69
57 58 4.365899 ACATACGTACTGCGATTCTCAA 57.634 40.909 0.00 0.00 44.77 3.02
58 59 4.812626 TCTACATACGTACTGCGATTCTCA 59.187 41.667 0.00 0.00 44.77 3.27
59 60 5.138788 GTCTACATACGTACTGCGATTCTC 58.861 45.833 0.00 0.00 44.77 2.87
60 61 4.318618 CGTCTACATACGTACTGCGATTCT 60.319 45.833 0.00 0.00 44.77 2.40
61 62 3.898946 CGTCTACATACGTACTGCGATTC 59.101 47.826 0.00 0.00 44.77 2.52
62 63 3.847467 GCGTCTACATACGTACTGCGATT 60.847 47.826 0.00 0.00 44.64 3.34
63 64 2.349249 GCGTCTACATACGTACTGCGAT 60.349 50.000 0.00 0.00 44.64 4.58
64 65 1.004610 GCGTCTACATACGTACTGCGA 60.005 52.381 0.00 0.00 44.64 5.10
65 66 1.004185 AGCGTCTACATACGTACTGCG 60.004 52.381 0.00 0.00 44.64 5.18
66 67 2.031314 TGAGCGTCTACATACGTACTGC 59.969 50.000 0.00 0.00 44.64 4.40
67 68 3.605406 GTGAGCGTCTACATACGTACTG 58.395 50.000 0.00 0.31 44.64 2.74
68 69 2.283617 CGTGAGCGTCTACATACGTACT 59.716 50.000 0.00 0.00 44.64 2.73
69 70 2.282555 TCGTGAGCGTCTACATACGTAC 59.717 50.000 0.00 0.00 44.64 3.67
70 71 2.282555 GTCGTGAGCGTCTACATACGTA 59.717 50.000 0.00 0.00 44.64 3.57
71 72 1.061711 GTCGTGAGCGTCTACATACGT 59.938 52.381 0.00 0.00 44.64 3.57
72 73 1.061566 TGTCGTGAGCGTCTACATACG 59.938 52.381 0.00 0.00 45.58 3.06
73 74 2.438583 GTGTCGTGAGCGTCTACATAC 58.561 52.381 0.00 0.00 39.49 2.39
74 75 1.061566 CGTGTCGTGAGCGTCTACATA 59.938 52.381 0.00 0.00 39.49 2.29
75 76 0.179197 CGTGTCGTGAGCGTCTACAT 60.179 55.000 0.00 0.00 39.49 2.29
76 77 1.205820 CGTGTCGTGAGCGTCTACA 59.794 57.895 0.00 0.00 39.49 2.74
77 78 2.144680 GCGTGTCGTGAGCGTCTAC 61.145 63.158 0.00 0.00 39.49 2.59
78 79 2.175078 GCGTGTCGTGAGCGTCTA 59.825 61.111 0.00 0.00 39.49 2.59
79 80 3.961197 TGCGTGTCGTGAGCGTCT 61.961 61.111 0.00 0.00 39.49 4.18
80 81 3.753539 GTGCGTGTCGTGAGCGTC 61.754 66.667 0.00 0.00 39.49 5.19
81 82 4.266070 AGTGCGTGTCGTGAGCGT 62.266 61.111 0.00 0.00 39.49 5.07
82 83 3.756677 CAGTGCGTGTCGTGAGCG 61.757 66.667 0.00 0.00 39.92 5.03
83 84 4.064491 GCAGTGCGTGTCGTGAGC 62.064 66.667 0.00 0.00 0.00 4.26
84 85 2.658268 TGCAGTGCGTGTCGTGAG 60.658 61.111 11.20 0.00 0.00 3.51
85 86 2.959599 GTGCAGTGCGTGTCGTGA 60.960 61.111 11.20 0.00 0.00 4.35
86 87 2.932083 GAGTGCAGTGCGTGTCGTG 61.932 63.158 11.20 0.00 0.00 4.35
87 88 2.658593 GAGTGCAGTGCGTGTCGT 60.659 61.111 11.20 0.00 0.00 4.34
88 89 2.658268 TGAGTGCAGTGCGTGTCG 60.658 61.111 11.20 0.00 0.00 4.35
89 90 2.598632 GGTGAGTGCAGTGCGTGTC 61.599 63.158 11.20 7.40 0.00 3.67
90 91 2.588877 GGTGAGTGCAGTGCGTGT 60.589 61.111 11.20 0.00 0.00 4.49
91 92 3.349006 GGGTGAGTGCAGTGCGTG 61.349 66.667 11.20 0.00 0.00 5.34
92 93 1.754380 TAAGGGTGAGTGCAGTGCGT 61.754 55.000 11.20 0.00 0.00 5.24
93 94 0.391661 ATAAGGGTGAGTGCAGTGCG 60.392 55.000 11.20 0.00 0.00 5.34
94 95 2.691409 TATAAGGGTGAGTGCAGTGC 57.309 50.000 8.58 8.58 0.00 4.40
95 96 2.939103 GCTTATAAGGGTGAGTGCAGTG 59.061 50.000 14.28 0.00 0.00 3.66
96 97 2.571653 TGCTTATAAGGGTGAGTGCAGT 59.428 45.455 14.28 0.00 0.00 4.40
97 98 2.939103 GTGCTTATAAGGGTGAGTGCAG 59.061 50.000 14.28 0.00 0.00 4.41
98 99 2.304470 TGTGCTTATAAGGGTGAGTGCA 59.696 45.455 14.28 1.39 0.00 4.57
99 100 2.985896 TGTGCTTATAAGGGTGAGTGC 58.014 47.619 14.28 0.00 0.00 4.40
100 101 3.313526 GCATGTGCTTATAAGGGTGAGTG 59.686 47.826 14.28 0.00 38.21 3.51
101 102 3.054434 TGCATGTGCTTATAAGGGTGAGT 60.054 43.478 14.28 0.00 42.66 3.41
102 103 3.313526 GTGCATGTGCTTATAAGGGTGAG 59.686 47.826 14.28 0.00 42.66 3.51
103 104 3.278574 GTGCATGTGCTTATAAGGGTGA 58.721 45.455 14.28 0.00 42.66 4.02
104 105 2.032054 CGTGCATGTGCTTATAAGGGTG 59.968 50.000 14.28 0.00 42.66 4.61
105 106 2.288666 CGTGCATGTGCTTATAAGGGT 58.711 47.619 14.28 0.00 42.66 4.34
106 107 2.288666 ACGTGCATGTGCTTATAAGGG 58.711 47.619 11.65 0.00 42.66 3.95
107 108 5.334105 GGATTACGTGCATGTGCTTATAAGG 60.334 44.000 21.92 0.00 42.66 2.69
108 109 5.466728 AGGATTACGTGCATGTGCTTATAAG 59.533 40.000 21.92 8.20 42.66 1.73
109 110 5.364778 AGGATTACGTGCATGTGCTTATAA 58.635 37.500 21.92 6.98 42.66 0.98
110 111 4.956085 AGGATTACGTGCATGTGCTTATA 58.044 39.130 21.92 0.00 42.66 0.98
111 112 3.808728 AGGATTACGTGCATGTGCTTAT 58.191 40.909 21.92 9.28 42.66 1.73
112 113 3.260475 AGGATTACGTGCATGTGCTTA 57.740 42.857 21.92 4.78 42.66 3.09
113 114 2.113860 AGGATTACGTGCATGTGCTT 57.886 45.000 21.92 5.90 42.66 3.91
114 115 2.550978 GTAGGATTACGTGCATGTGCT 58.449 47.619 21.92 8.32 42.66 4.40
115 116 1.597663 GGTAGGATTACGTGCATGTGC 59.402 52.381 21.92 10.38 42.50 4.57
116 117 2.210116 GGGTAGGATTACGTGCATGTG 58.790 52.381 21.92 1.66 0.00 3.21
117 118 1.140252 GGGGTAGGATTACGTGCATGT 59.860 52.381 17.19 17.19 0.00 3.21
118 119 1.416401 AGGGGTAGGATTACGTGCATG 59.584 52.381 3.82 3.82 0.00 4.06
119 120 1.802553 AGGGGTAGGATTACGTGCAT 58.197 50.000 0.00 0.00 0.00 3.96
120 121 1.575419 AAGGGGTAGGATTACGTGCA 58.425 50.000 0.00 0.00 0.00 4.57
121 122 2.704464 AAAGGGGTAGGATTACGTGC 57.296 50.000 0.00 0.00 0.00 5.34
122 123 4.124970 GCTTAAAGGGGTAGGATTACGTG 58.875 47.826 0.00 0.00 0.00 4.49
123 124 3.776417 TGCTTAAAGGGGTAGGATTACGT 59.224 43.478 0.00 0.00 0.00 3.57
124 125 4.411256 TGCTTAAAGGGGTAGGATTACG 57.589 45.455 0.00 0.00 0.00 3.18
125 126 6.189036 AGATGCTTAAAGGGGTAGGATTAC 57.811 41.667 0.00 0.00 0.00 1.89
126 127 5.309806 GGAGATGCTTAAAGGGGTAGGATTA 59.690 44.000 0.00 0.00 0.00 1.75
127 128 4.104897 GGAGATGCTTAAAGGGGTAGGATT 59.895 45.833 0.00 0.00 0.00 3.01
128 129 3.653352 GGAGATGCTTAAAGGGGTAGGAT 59.347 47.826 0.00 0.00 0.00 3.24
129 130 3.046374 GGAGATGCTTAAAGGGGTAGGA 58.954 50.000 0.00 0.00 0.00 2.94
130 131 2.777692 TGGAGATGCTTAAAGGGGTAGG 59.222 50.000 0.00 0.00 0.00 3.18
131 132 4.164221 TCTTGGAGATGCTTAAAGGGGTAG 59.836 45.833 0.00 0.00 0.00 3.18
132 133 4.108570 TCTTGGAGATGCTTAAAGGGGTA 58.891 43.478 0.00 0.00 0.00 3.69
133 134 2.919602 TCTTGGAGATGCTTAAAGGGGT 59.080 45.455 0.00 0.00 0.00 4.95
134 135 3.200825 TCTCTTGGAGATGCTTAAAGGGG 59.799 47.826 0.00 0.00 33.35 4.79
135 136 4.494091 TCTCTTGGAGATGCTTAAAGGG 57.506 45.455 0.00 0.00 33.35 3.95
136 137 4.331168 CGTTCTCTTGGAGATGCTTAAAGG 59.669 45.833 0.00 0.00 38.56 3.11
137 138 5.171476 TCGTTCTCTTGGAGATGCTTAAAG 58.829 41.667 0.00 0.00 38.56 1.85
138 139 5.147330 TCGTTCTCTTGGAGATGCTTAAA 57.853 39.130 0.00 0.00 38.56 1.52
139 140 4.748892 CTCGTTCTCTTGGAGATGCTTAA 58.251 43.478 0.00 0.00 38.56 1.85
140 141 3.429547 GCTCGTTCTCTTGGAGATGCTTA 60.430 47.826 0.00 0.00 38.56 3.09
141 142 2.676463 GCTCGTTCTCTTGGAGATGCTT 60.676 50.000 0.00 0.00 38.56 3.91
142 143 1.134848 GCTCGTTCTCTTGGAGATGCT 60.135 52.381 0.00 0.00 38.56 3.79
143 144 1.285578 GCTCGTTCTCTTGGAGATGC 58.714 55.000 0.00 0.00 38.56 3.91
144 145 1.800655 CGGCTCGTTCTCTTGGAGATG 60.801 57.143 0.00 0.00 38.56 2.90
145 146 0.457851 CGGCTCGTTCTCTTGGAGAT 59.542 55.000 0.00 0.00 38.56 2.75
146 147 1.595993 CCGGCTCGTTCTCTTGGAGA 61.596 60.000 0.00 0.00 36.86 3.71
147 148 1.153745 CCGGCTCGTTCTCTTGGAG 60.154 63.158 0.00 0.00 0.00 3.86
148 149 0.970937 ATCCGGCTCGTTCTCTTGGA 60.971 55.000 0.00 0.00 0.00 3.53
149 150 0.744874 TATCCGGCTCGTTCTCTTGG 59.255 55.000 0.00 0.00 0.00 3.61
150 151 2.579207 TTATCCGGCTCGTTCTCTTG 57.421 50.000 0.00 0.00 0.00 3.02
151 152 3.118738 ACAATTATCCGGCTCGTTCTCTT 60.119 43.478 0.00 0.00 0.00 2.85
152 153 2.431057 ACAATTATCCGGCTCGTTCTCT 59.569 45.455 0.00 0.00 0.00 3.10
153 154 2.822764 ACAATTATCCGGCTCGTTCTC 58.177 47.619 0.00 0.00 0.00 2.87
154 155 2.981859 ACAATTATCCGGCTCGTTCT 57.018 45.000 0.00 0.00 0.00 3.01
155 156 2.933906 TGAACAATTATCCGGCTCGTTC 59.066 45.455 0.00 4.41 33.57 3.95
156 157 2.676342 GTGAACAATTATCCGGCTCGTT 59.324 45.455 0.00 0.00 0.00 3.85
157 158 2.277084 GTGAACAATTATCCGGCTCGT 58.723 47.619 0.00 0.00 0.00 4.18
158 159 1.597663 GGTGAACAATTATCCGGCTCG 59.402 52.381 0.00 0.00 0.00 5.03
159 160 1.597663 CGGTGAACAATTATCCGGCTC 59.402 52.381 0.00 0.00 37.92 4.70
160 161 1.065709 ACGGTGAACAATTATCCGGCT 60.066 47.619 0.00 0.00 44.54 5.52
161 162 1.063469 CACGGTGAACAATTATCCGGC 59.937 52.381 0.74 0.00 44.54 6.13
162 163 1.668751 CCACGGTGAACAATTATCCGG 59.331 52.381 10.28 0.00 44.54 5.14
163 164 2.352388 ACCACGGTGAACAATTATCCG 58.648 47.619 10.28 0.00 45.53 4.18
164 165 5.355910 ACATTACCACGGTGAACAATTATCC 59.644 40.000 10.28 0.00 0.00 2.59
165 166 6.431198 ACATTACCACGGTGAACAATTATC 57.569 37.500 10.28 0.00 0.00 1.75
166 167 6.616947 CAACATTACCACGGTGAACAATTAT 58.383 36.000 10.28 0.00 0.00 1.28
167 168 5.563085 GCAACATTACCACGGTGAACAATTA 60.563 40.000 10.28 0.00 0.00 1.40
168 169 4.794655 GCAACATTACCACGGTGAACAATT 60.795 41.667 10.28 0.00 0.00 2.32
169 170 3.305064 GCAACATTACCACGGTGAACAAT 60.305 43.478 10.28 3.11 0.00 2.71
170 171 2.033550 GCAACATTACCACGGTGAACAA 59.966 45.455 10.28 0.70 0.00 2.83
171 172 1.604755 GCAACATTACCACGGTGAACA 59.395 47.619 10.28 0.00 0.00 3.18
172 173 1.068816 GGCAACATTACCACGGTGAAC 60.069 52.381 10.28 0.00 0.00 3.18
173 174 1.240256 GGCAACATTACCACGGTGAA 58.760 50.000 10.28 0.00 0.00 3.18
174 175 0.108774 TGGCAACATTACCACGGTGA 59.891 50.000 10.28 0.00 46.17 4.02
175 176 2.635079 TGGCAACATTACCACGGTG 58.365 52.632 0.00 0.00 46.17 4.94
186 187 8.802023 TGTACTCTACAAATTTTCGTGGCAACA 61.802 37.037 0.00 0.00 39.42 3.33
187 188 4.855531 ACTCTACAAATTTTCGTGGCAAC 58.144 39.130 0.00 0.00 0.00 4.17
188 189 5.527951 TGTACTCTACAAATTTTCGTGGCAA 59.472 36.000 0.00 0.00 35.38 4.52
189 190 5.057819 TGTACTCTACAAATTTTCGTGGCA 58.942 37.500 0.00 0.00 35.38 4.92
190 191 5.600908 TGTACTCTACAAATTTTCGTGGC 57.399 39.130 0.00 0.00 35.38 5.01
191 192 6.370442 TGGATGTACTCTACAAATTTTCGTGG 59.630 38.462 0.00 0.00 42.76 4.94
192 193 7.359262 TGGATGTACTCTACAAATTTTCGTG 57.641 36.000 0.00 0.00 42.76 4.35
193 194 9.095065 GTATGGATGTACTCTACAAATTTTCGT 57.905 33.333 0.00 0.00 42.76 3.85
194 195 9.314321 AGTATGGATGTACTCTACAAATTTTCG 57.686 33.333 0.00 0.00 42.76 3.46
200 201 8.857098 GGATGTAGTATGGATGTACTCTACAAA 58.143 37.037 0.00 0.00 42.76 2.83
201 202 8.225416 AGGATGTAGTATGGATGTACTCTACAA 58.775 37.037 0.00 0.00 42.76 2.41
202 203 7.756614 AGGATGTAGTATGGATGTACTCTACA 58.243 38.462 0.00 0.00 43.80 2.74
203 204 9.165035 GTAGGATGTAGTATGGATGTACTCTAC 57.835 40.741 0.00 0.00 36.39 2.59
204 205 8.887393 TGTAGGATGTAGTATGGATGTACTCTA 58.113 37.037 0.00 0.00 36.39 2.43
205 206 7.756614 TGTAGGATGTAGTATGGATGTACTCT 58.243 38.462 0.00 0.00 36.39 3.24
206 207 7.997773 TGTAGGATGTAGTATGGATGTACTC 57.002 40.000 0.00 0.00 36.39 2.59
207 208 8.958060 ATTGTAGGATGTAGTATGGATGTACT 57.042 34.615 0.00 0.00 38.42 2.73
211 212 9.973450 GCTATATTGTAGGATGTAGTATGGATG 57.027 37.037 0.00 0.00 0.00 3.51
212 213 9.944079 AGCTATATTGTAGGATGTAGTATGGAT 57.056 33.333 0.00 0.00 0.00 3.41
213 214 9.409918 GAGCTATATTGTAGGATGTAGTATGGA 57.590 37.037 0.00 0.00 0.00 3.41
214 215 9.415008 AGAGCTATATTGTAGGATGTAGTATGG 57.585 37.037 0.00 0.00 0.00 2.74
216 217 9.983024 ACAGAGCTATATTGTAGGATGTAGTAT 57.017 33.333 0.00 0.00 0.00 2.12
217 218 9.232473 CACAGAGCTATATTGTAGGATGTAGTA 57.768 37.037 0.00 0.00 0.00 1.82
218 219 7.945109 TCACAGAGCTATATTGTAGGATGTAGT 59.055 37.037 0.00 0.00 0.00 2.73
219 220 8.341892 TCACAGAGCTATATTGTAGGATGTAG 57.658 38.462 0.00 0.00 0.00 2.74
220 221 8.885693 ATCACAGAGCTATATTGTAGGATGTA 57.114 34.615 0.00 0.00 0.00 2.29
221 222 7.789202 ATCACAGAGCTATATTGTAGGATGT 57.211 36.000 0.00 0.00 0.00 3.06
222 223 9.499479 AAAATCACAGAGCTATATTGTAGGATG 57.501 33.333 0.00 0.00 0.00 3.51
223 224 9.717942 GAAAATCACAGAGCTATATTGTAGGAT 57.282 33.333 0.00 0.00 0.00 3.24
224 225 8.704668 TGAAAATCACAGAGCTATATTGTAGGA 58.295 33.333 0.00 0.00 0.00 2.94
225 226 8.893219 TGAAAATCACAGAGCTATATTGTAGG 57.107 34.615 0.00 0.00 0.00 3.18
265 266 9.498176 GGAAAAAGACTATGTTACCTTCTACAA 57.502 33.333 0.00 0.00 0.00 2.41
266 267 8.098912 GGGAAAAAGACTATGTTACCTTCTACA 58.901 37.037 0.00 0.00 0.00 2.74
267 268 8.098912 TGGGAAAAAGACTATGTTACCTTCTAC 58.901 37.037 0.00 0.00 0.00 2.59
268 269 8.209802 TGGGAAAAAGACTATGTTACCTTCTA 57.790 34.615 0.00 0.00 0.00 2.10
269 270 7.017254 TCTGGGAAAAAGACTATGTTACCTTCT 59.983 37.037 0.00 0.00 0.00 2.85
270 271 7.119407 GTCTGGGAAAAAGACTATGTTACCTTC 59.881 40.741 0.00 0.00 40.77 3.46
271 272 6.940867 GTCTGGGAAAAAGACTATGTTACCTT 59.059 38.462 0.00 0.00 40.77 3.50
272 273 6.473758 GTCTGGGAAAAAGACTATGTTACCT 58.526 40.000 0.00 0.00 40.77 3.08
273 274 6.738832 GTCTGGGAAAAAGACTATGTTACC 57.261 41.667 0.00 0.00 40.77 2.85
282 283 5.177142 GTCGAACTTAGTCTGGGAAAAAGAC 59.823 44.000 0.00 0.00 43.66 3.01
283 284 5.070047 AGTCGAACTTAGTCTGGGAAAAAGA 59.930 40.000 0.00 0.00 0.00 2.52
284 285 5.298347 AGTCGAACTTAGTCTGGGAAAAAG 58.702 41.667 0.00 0.00 0.00 2.27
285 286 5.286267 AGTCGAACTTAGTCTGGGAAAAA 57.714 39.130 0.00 0.00 0.00 1.94
286 287 4.950205 AGTCGAACTTAGTCTGGGAAAA 57.050 40.909 0.00 0.00 0.00 2.29
287 288 5.771666 TCTTAGTCGAACTTAGTCTGGGAAA 59.228 40.000 0.00 0.00 0.00 3.13
288 289 5.319453 TCTTAGTCGAACTTAGTCTGGGAA 58.681 41.667 0.00 0.00 0.00 3.97
289 290 4.914983 TCTTAGTCGAACTTAGTCTGGGA 58.085 43.478 0.00 0.00 0.00 4.37
290 291 4.096682 CCTCTTAGTCGAACTTAGTCTGGG 59.903 50.000 0.00 0.00 0.00 4.45
291 292 4.942483 TCCTCTTAGTCGAACTTAGTCTGG 59.058 45.833 0.00 0.00 0.00 3.86
292 293 6.687081 ATCCTCTTAGTCGAACTTAGTCTG 57.313 41.667 0.00 0.00 0.00 3.51
293 294 7.828223 TGTAATCCTCTTAGTCGAACTTAGTCT 59.172 37.037 0.00 0.00 0.00 3.24
294 295 7.909641 GTGTAATCCTCTTAGTCGAACTTAGTC 59.090 40.741 0.00 0.00 0.00 2.59
295 296 7.392673 TGTGTAATCCTCTTAGTCGAACTTAGT 59.607 37.037 0.00 0.00 0.00 2.24
296 297 7.759465 TGTGTAATCCTCTTAGTCGAACTTAG 58.241 38.462 0.00 0.00 0.00 2.18
297 298 7.692460 TGTGTAATCCTCTTAGTCGAACTTA 57.308 36.000 0.00 0.00 0.00 2.24
298 299 6.585695 TGTGTAATCCTCTTAGTCGAACTT 57.414 37.500 0.00 0.00 0.00 2.66
299 300 6.777213 ATGTGTAATCCTCTTAGTCGAACT 57.223 37.500 0.00 0.00 0.00 3.01
300 301 8.189460 AGTAATGTGTAATCCTCTTAGTCGAAC 58.811 37.037 0.00 0.00 0.00 3.95
301 302 8.289939 AGTAATGTGTAATCCTCTTAGTCGAA 57.710 34.615 0.00 0.00 0.00 3.71
302 303 7.876936 AGTAATGTGTAATCCTCTTAGTCGA 57.123 36.000 0.00 0.00 0.00 4.20
303 304 8.188799 TCAAGTAATGTGTAATCCTCTTAGTCG 58.811 37.037 0.00 0.00 0.00 4.18
304 305 9.303537 GTCAAGTAATGTGTAATCCTCTTAGTC 57.696 37.037 0.00 0.00 0.00 2.59
305 306 9.036980 AGTCAAGTAATGTGTAATCCTCTTAGT 57.963 33.333 0.00 0.00 0.00 2.24
306 307 9.307121 CAGTCAAGTAATGTGTAATCCTCTTAG 57.693 37.037 0.00 0.00 0.00 2.18
307 308 8.258007 CCAGTCAAGTAATGTGTAATCCTCTTA 58.742 37.037 0.00 0.00 0.00 2.10
308 309 7.038302 TCCAGTCAAGTAATGTGTAATCCTCTT 60.038 37.037 0.00 0.00 0.00 2.85
309 310 6.440647 TCCAGTCAAGTAATGTGTAATCCTCT 59.559 38.462 0.00 0.00 0.00 3.69
310 311 6.640518 TCCAGTCAAGTAATGTGTAATCCTC 58.359 40.000 0.00 0.00 0.00 3.71
311 312 6.620877 TCCAGTCAAGTAATGTGTAATCCT 57.379 37.500 0.00 0.00 0.00 3.24
312 313 7.254455 CGAATCCAGTCAAGTAATGTGTAATCC 60.254 40.741 0.00 0.00 0.00 3.01
313 314 7.491372 TCGAATCCAGTCAAGTAATGTGTAATC 59.509 37.037 0.00 0.00 0.00 1.75
314 315 7.327975 TCGAATCCAGTCAAGTAATGTGTAAT 58.672 34.615 0.00 0.00 0.00 1.89
315 316 6.693466 TCGAATCCAGTCAAGTAATGTGTAA 58.307 36.000 0.00 0.00 0.00 2.41
316 317 6.275494 TCGAATCCAGTCAAGTAATGTGTA 57.725 37.500 0.00 0.00 0.00 2.90
317 318 5.147330 TCGAATCCAGTCAAGTAATGTGT 57.853 39.130 0.00 0.00 0.00 3.72
318 319 5.812127 TGATCGAATCCAGTCAAGTAATGTG 59.188 40.000 0.00 0.00 0.00 3.21
319 320 5.977635 TGATCGAATCCAGTCAAGTAATGT 58.022 37.500 0.00 0.00 0.00 2.71
320 321 6.703165 TGATGATCGAATCCAGTCAAGTAATG 59.297 38.462 0.00 0.00 0.00 1.90
321 322 6.820335 TGATGATCGAATCCAGTCAAGTAAT 58.180 36.000 0.00 0.00 0.00 1.89
322 323 6.220726 TGATGATCGAATCCAGTCAAGTAA 57.779 37.500 0.00 0.00 0.00 2.24
323 324 5.852282 TGATGATCGAATCCAGTCAAGTA 57.148 39.130 0.00 0.00 0.00 2.24
324 325 4.743057 TGATGATCGAATCCAGTCAAGT 57.257 40.909 0.00 0.00 0.00 3.16
325 326 5.868258 CCTATGATGATCGAATCCAGTCAAG 59.132 44.000 0.00 0.00 0.00 3.02
326 327 5.539955 TCCTATGATGATCGAATCCAGTCAA 59.460 40.000 0.00 0.00 0.00 3.18
327 328 5.047731 GTCCTATGATGATCGAATCCAGTCA 60.048 44.000 0.00 0.00 0.00 3.41
328 329 5.406649 GTCCTATGATGATCGAATCCAGTC 58.593 45.833 0.00 0.00 0.00 3.51
329 330 4.221703 GGTCCTATGATGATCGAATCCAGT 59.778 45.833 0.00 0.00 0.00 4.00
330 331 4.465660 AGGTCCTATGATGATCGAATCCAG 59.534 45.833 0.00 0.00 0.00 3.86
331 332 4.420206 AGGTCCTATGATGATCGAATCCA 58.580 43.478 0.00 0.00 0.00 3.41
332 333 5.888724 TCTAGGTCCTATGATGATCGAATCC 59.111 44.000 0.00 0.00 0.00 3.01
333 334 7.581213 ATCTAGGTCCTATGATGATCGAATC 57.419 40.000 0.00 0.00 0.00 2.52
334 335 7.617329 TGAATCTAGGTCCTATGATGATCGAAT 59.383 37.037 0.00 0.00 0.00 3.34
335 336 6.948309 TGAATCTAGGTCCTATGATGATCGAA 59.052 38.462 0.00 0.00 0.00 3.71
336 337 6.485171 TGAATCTAGGTCCTATGATGATCGA 58.515 40.000 0.00 0.00 0.00 3.59
337 338 6.601217 TCTGAATCTAGGTCCTATGATGATCG 59.399 42.308 0.00 0.00 0.00 3.69
338 339 7.953005 TCTGAATCTAGGTCCTATGATGATC 57.047 40.000 0.00 2.24 0.00 2.92
339 340 8.760735 CAATCTGAATCTAGGTCCTATGATGAT 58.239 37.037 0.00 0.00 0.00 2.45
340 341 7.952368 TCAATCTGAATCTAGGTCCTATGATGA 59.048 37.037 0.00 0.00 0.00 2.92
341 342 8.131847 TCAATCTGAATCTAGGTCCTATGATG 57.868 38.462 0.00 0.00 0.00 3.07
342 343 8.914213 ATCAATCTGAATCTAGGTCCTATGAT 57.086 34.615 0.00 2.45 0.00 2.45
343 344 8.733092 AATCAATCTGAATCTAGGTCCTATGA 57.267 34.615 0.00 0.05 0.00 2.15
381 382 9.684702 AGGTAATTAGATGAATCTACCCCTAAA 57.315 33.333 0.00 0.00 39.00 1.85
382 383 9.101325 CAGGTAATTAGATGAATCTACCCCTAA 57.899 37.037 0.00 0.00 39.00 2.69
383 384 7.180408 GCAGGTAATTAGATGAATCTACCCCTA 59.820 40.741 0.00 0.00 39.00 3.53
384 385 6.013293 GCAGGTAATTAGATGAATCTACCCCT 60.013 42.308 0.00 1.35 39.00 4.79
385 386 6.174049 GCAGGTAATTAGATGAATCTACCCC 58.826 44.000 0.00 0.00 39.00 4.95
386 387 6.769512 TGCAGGTAATTAGATGAATCTACCC 58.230 40.000 0.00 0.00 39.00 3.69
387 388 8.854614 AATGCAGGTAATTAGATGAATCTACC 57.145 34.615 0.00 1.34 39.00 3.18
388 389 8.940952 GGAATGCAGGTAATTAGATGAATCTAC 58.059 37.037 0.00 0.00 39.00 2.59
389 390 8.659527 TGGAATGCAGGTAATTAGATGAATCTA 58.340 33.333 0.00 0.00 38.32 1.98
390 391 7.520798 TGGAATGCAGGTAATTAGATGAATCT 58.479 34.615 0.00 0.00 40.86 2.40
391 392 7.750229 TGGAATGCAGGTAATTAGATGAATC 57.250 36.000 0.00 0.00 0.00 2.52
392 393 9.458727 CTATGGAATGCAGGTAATTAGATGAAT 57.541 33.333 0.00 0.00 0.00 2.57
393 394 8.659527 TCTATGGAATGCAGGTAATTAGATGAA 58.340 33.333 0.00 0.00 0.00 2.57
394 395 8.206126 TCTATGGAATGCAGGTAATTAGATGA 57.794 34.615 0.00 0.00 0.00 2.92
395 396 8.853077 TTCTATGGAATGCAGGTAATTAGATG 57.147 34.615 0.00 0.00 0.00 2.90
396 397 7.609532 GCTTCTATGGAATGCAGGTAATTAGAT 59.390 37.037 0.00 0.00 0.00 1.98
397 398 6.936900 GCTTCTATGGAATGCAGGTAATTAGA 59.063 38.462 0.00 0.00 0.00 2.10
398 399 6.939163 AGCTTCTATGGAATGCAGGTAATTAG 59.061 38.462 13.00 0.00 32.26 1.73
399 400 6.841601 AGCTTCTATGGAATGCAGGTAATTA 58.158 36.000 13.00 0.00 32.26 1.40
400 401 5.699143 AGCTTCTATGGAATGCAGGTAATT 58.301 37.500 13.00 0.00 32.26 1.40
401 402 5.316158 AGCTTCTATGGAATGCAGGTAAT 57.684 39.130 13.00 0.00 32.26 1.89
402 403 4.778213 AGCTTCTATGGAATGCAGGTAA 57.222 40.909 13.00 0.00 32.26 2.85
403 404 5.602561 TCTTAGCTTCTATGGAATGCAGGTA 59.397 40.000 13.00 1.12 32.26 3.08
404 405 4.410228 TCTTAGCTTCTATGGAATGCAGGT 59.590 41.667 13.00 1.92 32.26 4.00
405 406 4.965814 TCTTAGCTTCTATGGAATGCAGG 58.034 43.478 13.00 5.54 32.26 4.85
406 407 5.469421 CCTTCTTAGCTTCTATGGAATGCAG 59.531 44.000 13.00 5.64 32.26 4.41
415 416 7.634718 ACTTTTAAGCCCTTCTTAGCTTCTAT 58.365 34.615 0.00 0.00 46.11 1.98
449 450 3.502211 ACTGGGTTTTCAGCGTTTCATAG 59.498 43.478 0.00 0.00 38.26 2.23
450 451 3.482436 ACTGGGTTTTCAGCGTTTCATA 58.518 40.909 0.00 0.00 38.26 2.15
455 456 0.822121 GGGACTGGGTTTTCAGCGTT 60.822 55.000 0.00 0.00 38.26 4.84
456 457 1.228154 GGGACTGGGTTTTCAGCGT 60.228 57.895 0.00 0.00 38.26 5.07
469 470 0.764369 TGGTTCTGAGTGCAGGGACT 60.764 55.000 0.00 0.00 42.53 3.85
470 471 0.603975 GTGGTTCTGAGTGCAGGGAC 60.604 60.000 0.00 0.00 42.53 4.46
473 474 1.538512 CATTGTGGTTCTGAGTGCAGG 59.461 52.381 0.00 0.00 42.53 4.85
483 484 3.003480 GTCCTACTCAGCATTGTGGTTC 58.997 50.000 0.00 0.00 0.00 3.62
503 504 3.225104 AGACATGAGGCAAATGTGTTGT 58.775 40.909 9.47 0.00 38.37 3.32
519 520 5.574188 AGGTAAGCAATGAAAAGGAGACAT 58.426 37.500 0.00 0.00 0.00 3.06
522 523 6.976934 AAAAGGTAAGCAATGAAAAGGAGA 57.023 33.333 0.00 0.00 0.00 3.71
523 524 7.169813 GTCAAAAAGGTAAGCAATGAAAAGGAG 59.830 37.037 0.00 0.00 0.00 3.69
525 526 6.202762 GGTCAAAAAGGTAAGCAATGAAAAGG 59.797 38.462 0.00 0.00 0.00 3.11
527 528 6.644347 TGGTCAAAAAGGTAAGCAATGAAAA 58.356 32.000 0.00 0.00 0.00 2.29
534 536 6.097554 TCTGAATTTGGTCAAAAAGGTAAGCA 59.902 34.615 0.00 0.00 33.56 3.91
545 547 7.867403 GCAAGAAAGTTATCTGAATTTGGTCAA 59.133 33.333 0.00 0.00 0.00 3.18
550 552 7.597743 AGCAAGCAAGAAAGTTATCTGAATTTG 59.402 33.333 0.00 0.00 0.00 2.32
570 572 1.458398 GAAGGAAGGAAGGAGCAAGC 58.542 55.000 0.00 0.00 0.00 4.01
574 576 1.065053 GGAAGGAAGGAAGGAAGGAGC 60.065 57.143 0.00 0.00 0.00 4.70
577 579 2.644798 TGAAGGAAGGAAGGAAGGAAGG 59.355 50.000 0.00 0.00 0.00 3.46
578 580 3.308046 CCTGAAGGAAGGAAGGAAGGAAG 60.308 52.174 0.00 0.00 40.02 3.46
579 581 2.644798 CCTGAAGGAAGGAAGGAAGGAA 59.355 50.000 0.00 0.00 40.02 3.36
580 582 2.158004 TCCTGAAGGAAGGAAGGAAGGA 60.158 50.000 0.00 0.00 43.57 3.36
581 583 2.269940 TCCTGAAGGAAGGAAGGAAGG 58.730 52.381 0.00 0.00 43.57 3.46
605 607 5.071788 AGTTTCTGAATGGTGGAGTACTGAA 59.928 40.000 0.00 0.00 0.00 3.02
607 609 4.899502 AGTTTCTGAATGGTGGAGTACTG 58.100 43.478 0.00 0.00 0.00 2.74
614 616 5.476599 TGATAACCAAGTTTCTGAATGGTGG 59.523 40.000 13.35 11.82 45.15 4.61
615 617 6.573664 TGATAACCAAGTTTCTGAATGGTG 57.426 37.500 13.35 2.32 45.15 4.17
632 634 8.671384 TGCCTTTATAGTACATGGTTGATAAC 57.329 34.615 0.00 0.00 0.00 1.89
633 635 9.502091 GATGCCTTTATAGTACATGGTTGATAA 57.498 33.333 0.00 0.00 0.00 1.75
634 636 8.655901 TGATGCCTTTATAGTACATGGTTGATA 58.344 33.333 0.00 0.00 0.00 2.15
635 637 7.517320 TGATGCCTTTATAGTACATGGTTGAT 58.483 34.615 0.00 0.00 0.00 2.57
636 638 6.894682 TGATGCCTTTATAGTACATGGTTGA 58.105 36.000 0.00 0.00 0.00 3.18
637 639 7.750229 ATGATGCCTTTATAGTACATGGTTG 57.250 36.000 0.00 0.00 0.00 3.77
638 640 8.103305 CCTATGATGCCTTTATAGTACATGGTT 58.897 37.037 0.00 0.00 0.00 3.67
639 641 7.457852 TCCTATGATGCCTTTATAGTACATGGT 59.542 37.037 0.00 0.00 0.00 3.55
640 642 7.851228 TCCTATGATGCCTTTATAGTACATGG 58.149 38.462 0.00 0.00 0.00 3.66
646 648 9.499369 AGTCATATCCTATGATGCCTTTATAGT 57.501 33.333 0.55 0.00 32.18 2.12
649 651 8.829746 TGAAGTCATATCCTATGATGCCTTTAT 58.170 33.333 0.55 0.00 32.18 1.40
650 652 8.206126 TGAAGTCATATCCTATGATGCCTTTA 57.794 34.615 0.55 0.00 32.18 1.85
651 653 7.083062 TGAAGTCATATCCTATGATGCCTTT 57.917 36.000 0.55 0.00 32.18 3.11
652 654 6.296317 CCTGAAGTCATATCCTATGATGCCTT 60.296 42.308 0.55 0.61 32.18 4.35
653 655 5.189342 CCTGAAGTCATATCCTATGATGCCT 59.811 44.000 0.55 0.00 32.18 4.75
654 656 5.426504 CCTGAAGTCATATCCTATGATGCC 58.573 45.833 0.55 0.00 32.18 4.40
655 657 5.046014 ACCCTGAAGTCATATCCTATGATGC 60.046 44.000 0.55 0.00 32.18 3.91
735 737 1.074889 CATCAGCCATCATGGGGATCA 59.925 52.381 5.62 0.00 38.19 2.92
736 738 1.353358 TCATCAGCCATCATGGGGATC 59.647 52.381 5.62 0.00 38.19 3.36
748 750 2.175715 AGGGGTAGGATTTTCATCAGCC 59.824 50.000 0.00 0.00 0.00 4.85
749 751 3.217626 CAGGGGTAGGATTTTCATCAGC 58.782 50.000 0.00 0.00 0.00 4.26
754 756 1.992557 AGTGCAGGGGTAGGATTTTCA 59.007 47.619 0.00 0.00 0.00 2.69
755 757 2.026262 TGAGTGCAGGGGTAGGATTTTC 60.026 50.000 0.00 0.00 0.00 2.29
756 758 1.992557 TGAGTGCAGGGGTAGGATTTT 59.007 47.619 0.00 0.00 0.00 1.82
764 766 0.032615 TTGGTTTTGAGTGCAGGGGT 60.033 50.000 0.00 0.00 0.00 4.95
782 784 2.899900 TGTCCTACTCACACTCAGCATT 59.100 45.455 0.00 0.00 0.00 3.56
792 794 3.008049 AGGGAAATGTGTGTCCTACTCAC 59.992 47.826 5.53 5.53 41.48 3.51
817 819 2.379907 AGGAGGCAATGGAAAGGAAAGA 59.620 45.455 0.00 0.00 0.00 2.52
835 837 4.617253 TCTCGAATTGGACAGAAAAGGA 57.383 40.909 0.00 0.00 0.00 3.36
845 847 6.947464 AGGAAGAAAGTTATCTCGAATTGGA 58.053 36.000 0.00 0.00 0.00 3.53
902 904 2.626840 GAGAGAGAGCCATGTTGTTCC 58.373 52.381 0.00 0.00 0.00 3.62
925 927 3.181468 TGCAGAGATGCATAAGTGAGAGG 60.181 47.826 0.00 0.00 40.23 3.69
950 958 0.324614 TCGATGTGTGAACCATGGCT 59.675 50.000 13.04 0.00 0.00 4.75
951 959 1.164411 TTCGATGTGTGAACCATGGC 58.836 50.000 13.04 0.00 0.00 4.40
952 960 2.414559 GCTTTCGATGTGTGAACCATGG 60.415 50.000 11.19 11.19 0.00 3.66
953 961 2.414559 GGCTTTCGATGTGTGAACCATG 60.415 50.000 0.00 0.00 0.00 3.66
954 962 1.812571 GGCTTTCGATGTGTGAACCAT 59.187 47.619 0.00 0.00 0.00 3.55
955 963 1.202758 AGGCTTTCGATGTGTGAACCA 60.203 47.619 0.00 0.00 0.00 3.67
998 1006 4.467084 GAGAACGGGCGGCCATGA 62.467 66.667 29.19 0.00 0.00 3.07
1143 1151 2.032634 GTCCTCGCCGAACATTGCA 61.033 57.895 0.00 0.00 0.00 4.08
1206 1214 6.385759 TGCCCTTTGTCTATCTTATTACCTCA 59.614 38.462 0.00 0.00 0.00 3.86
1221 1232 3.279434 CCTACCTGTTATGCCCTTTGTC 58.721 50.000 0.00 0.00 0.00 3.18
1247 1258 2.091112 CGTTGAGACGCTCTGCCAG 61.091 63.158 8.07 0.00 43.03 4.85
1248 1259 2.049156 CGTTGAGACGCTCTGCCA 60.049 61.111 8.07 0.00 43.03 4.92
1540 1556 2.788191 GAAGCAGGACGTGGACAGGG 62.788 65.000 0.00 0.00 0.00 4.45
1541 1557 1.374758 GAAGCAGGACGTGGACAGG 60.375 63.158 0.00 0.00 0.00 4.00
1542 1558 0.389166 GAGAAGCAGGACGTGGACAG 60.389 60.000 0.00 0.00 0.00 3.51
1543 1559 1.666011 GAGAAGCAGGACGTGGACA 59.334 57.895 0.00 0.00 0.00 4.02
1544 1560 1.444553 CGAGAAGCAGGACGTGGAC 60.445 63.158 0.00 0.00 0.00 4.02
1550 1571 0.318762 ACCAGAACGAGAAGCAGGAC 59.681 55.000 0.00 0.00 0.00 3.85
1596 1617 1.677217 GGAGTGAGCTACCTTTGCCAG 60.677 57.143 0.00 0.00 0.00 4.85
1598 1619 0.615850 AGGAGTGAGCTACCTTTGCC 59.384 55.000 0.00 0.00 0.00 4.52
1846 1867 6.446909 TTGGTGAAGTCATGCCCATATATA 57.553 37.500 0.00 0.00 0.00 0.86
1889 1910 4.260170 GCCAAGATTCACATTCAGAGACT 58.740 43.478 0.00 0.00 0.00 3.24
1890 1911 3.376546 GGCCAAGATTCACATTCAGAGAC 59.623 47.826 0.00 0.00 0.00 3.36
1891 1912 3.009363 TGGCCAAGATTCACATTCAGAGA 59.991 43.478 0.61 0.00 0.00 3.10
1893 1914 3.438216 TGGCCAAGATTCACATTCAGA 57.562 42.857 0.61 0.00 0.00 3.27
1894 1915 4.158949 TGATTGGCCAAGATTCACATTCAG 59.841 41.667 24.94 0.00 0.00 3.02
1895 1916 4.087907 TGATTGGCCAAGATTCACATTCA 58.912 39.130 24.94 15.74 0.00 2.57
1897 1918 4.712829 TCATGATTGGCCAAGATTCACATT 59.287 37.500 24.94 2.80 0.00 2.71
1898 1919 4.283337 TCATGATTGGCCAAGATTCACAT 58.717 39.130 24.94 16.95 0.00 3.21
1899 1920 3.699413 TCATGATTGGCCAAGATTCACA 58.301 40.909 24.94 15.58 0.00 3.58
1901 1922 4.712829 ACATTCATGATTGGCCAAGATTCA 59.287 37.500 24.94 22.07 0.00 2.57
1902 1923 5.047847 CACATTCATGATTGGCCAAGATTC 58.952 41.667 24.94 16.95 0.00 2.52
1903 1924 4.468510 ACACATTCATGATTGGCCAAGATT 59.531 37.500 24.94 7.11 0.00 2.40
1904 1925 4.028131 ACACATTCATGATTGGCCAAGAT 58.972 39.130 24.94 15.17 0.00 2.40
2004 2064 4.636206 CCTTGCAGTAATACTTGGAAGGAC 59.364 45.833 24.34 1.43 41.99 3.85
2051 2111 6.969828 AGCTAGTACAAATTCAAGTACAGC 57.030 37.500 18.79 18.79 42.26 4.40
2153 2213 3.128068 GCCCTCGTAACCAACCTTTTATG 59.872 47.826 0.00 0.00 0.00 1.90
2400 2460 4.156455 TCCCAAGTTCAGATAAGATGGC 57.844 45.455 0.00 0.00 0.00 4.40
2452 2512 7.765360 CCACAATGGATGTTAAGCAATTATGTT 59.235 33.333 0.00 0.00 41.46 2.71
2734 2794 7.192148 CATCAATTTTGTTGATGCCAAAAGA 57.808 32.000 15.31 0.00 46.03 2.52
2858 2918 2.691409 TTCCTGAATAGGGAGTTGCG 57.309 50.000 0.00 0.00 44.70 4.85
2880 2940 0.798776 CCTCGTTTGGATGACAGTGC 59.201 55.000 0.00 0.00 0.00 4.40
3032 3092 3.492337 GGTGATAACAAGGGTTTGGTGA 58.508 45.455 0.00 0.00 38.66 4.02
3072 3132 6.320171 CACATCAGAAGCAGGAAATTACTTG 58.680 40.000 0.00 0.00 0.00 3.16
3175 3235 9.384764 TCATTTGTATCCGTTTTGATGTACATA 57.615 29.630 8.71 0.00 0.00 2.29
3260 3320 7.174253 TCCACGCTTTATCATTCAGTTTTAACT 59.826 33.333 0.00 0.00 40.60 2.24
3280 3340 0.741221 CACTAGGCTTCCTTCCACGC 60.741 60.000 0.00 0.00 34.61 5.34
3318 3380 1.741770 GTGTGCAAGGGCGGTAGAG 60.742 63.158 0.00 0.00 45.35 2.43


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.