Multiple sequence alignment - TraesCS5A01G233800

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G233800 chr5A 100.000 4662 0 0 1 4662 450159542 450164203 0.000000e+00 8610.0
1 TraesCS5A01G233800 chr5A 88.636 264 26 3 1871 2132 42738448 42738187 7.530000e-83 318.0
2 TraesCS5A01G233800 chr5A 89.362 235 16 4 63 294 638808432 638808204 2.120000e-73 287.0
3 TraesCS5A01G233800 chr5A 86.742 264 23 4 1871 2132 544466237 544465984 2.750000e-72 283.0
4 TraesCS5A01G233800 chr5A 90.476 105 8 2 814 917 563357463 563357360 2.260000e-28 137.0
5 TraesCS5A01G233800 chr5A 93.651 63 4 0 2 64 292150039 292149977 1.380000e-15 95.3
6 TraesCS5A01G233800 chr5A 93.548 62 4 0 3 64 530422383 530422444 4.970000e-15 93.5
7 TraesCS5A01G233800 chr5D 92.888 2292 102 22 2411 4662 349862288 349864558 0.000000e+00 3273.0
8 TraesCS5A01G233800 chr5D 92.892 1224 52 10 1110 2326 349861095 349862290 0.000000e+00 1746.0
9 TraesCS5A01G233800 chr5B 93.530 1221 61 8 1111 2326 410527661 410528868 0.000000e+00 1801.0
10 TraesCS5A01G233800 chr5B 92.406 1251 63 11 2626 3846 410529137 410530385 0.000000e+00 1755.0
11 TraesCS5A01G233800 chr5B 91.189 1203 64 17 3495 4662 410530032 410531227 0.000000e+00 1596.0
12 TraesCS5A01G233800 chr5B 100.000 90 0 0 2431 2520 410529047 410529136 2.890000e-37 167.0
13 TraesCS5A01G233800 chr5B 91.429 105 4 3 2312 2414 24807171 24807272 6.290000e-29 139.0
14 TraesCS5A01G233800 chr1A 95.245 652 21 2 63 710 14248258 14247613 0.000000e+00 1024.0
15 TraesCS5A01G233800 chr1A 87.500 144 14 2 714 855 469182928 469183069 3.730000e-36 163.0
16 TraesCS5A01G233800 chr1A 90.566 106 7 1 2318 2423 186714654 186714756 2.260000e-28 137.0
17 TraesCS5A01G233800 chr1A 85.294 136 17 2 719 852 509725754 509725888 2.260000e-28 137.0
18 TraesCS5A01G233800 chr1A 85.385 130 16 2 719 846 509799239 509799367 1.050000e-26 132.0
19 TraesCS5A01G233800 chr2D 92.727 385 21 3 62 446 512758654 512759031 2.450000e-152 549.0
20 TraesCS5A01G233800 chr2D 85.572 201 27 1 1932 2132 626272216 626272414 4.730000e-50 209.0
21 TraesCS5A01G233800 chr2D 94.792 96 2 1 2318 2413 54963976 54963884 3.760000e-31 147.0
22 TraesCS5A01G233800 chr6A 88.636 264 26 3 1871 2132 98891754 98892015 7.530000e-83 318.0
23 TraesCS5A01G233800 chr4B 90.678 236 16 1 61 296 14891559 14891330 4.530000e-80 309.0
24 TraesCS5A01G233800 chr4A 85.171 263 31 6 1871 2132 200222076 200222331 3.580000e-66 263.0
25 TraesCS5A01G233800 chr2B 88.166 169 16 2 1855 2023 11199856 11200020 1.020000e-46 198.0
26 TraesCS5A01G233800 chr2B 86.740 181 21 2 1952 2132 787223770 787223593 1.020000e-46 198.0
27 TraesCS5A01G233800 chr2B 93.000 100 4 1 2318 2417 129661940 129662036 4.860000e-30 143.0
28 TraesCS5A01G233800 chr7B 91.729 133 10 1 1877 2009 57427064 57426933 2.870000e-42 183.0
29 TraesCS5A01G233800 chr7B 91.667 108 5 2 2314 2420 361147182 361147078 3.760000e-31 147.0
30 TraesCS5A01G233800 chr7B 92.233 103 3 2 2317 2417 569932943 569932844 1.750000e-29 141.0
31 TraesCS5A01G233800 chr6B 85.246 183 22 4 714 893 621305465 621305645 2.870000e-42 183.0
32 TraesCS5A01G233800 chr4D 91.129 124 10 1 1871 1993 339440092 339439969 2.890000e-37 167.0
33 TraesCS5A01G233800 chr1D 87.500 144 13 3 714 855 370314720 370314860 1.340000e-35 161.0
34 TraesCS5A01G233800 chr1B 89.908 109 7 2 2314 2421 429545802 429545697 2.260000e-28 137.0
35 TraesCS5A01G233800 chr3B 89.286 112 6 3 2310 2420 793672048 793671942 8.140000e-28 135.0
36 TraesCS5A01G233800 chr3A 90.566 106 4 4 2324 2428 644583010 644582910 8.140000e-28 135.0
37 TraesCS5A01G233800 chr2A 83.942 137 20 2 722 856 721983872 721984008 3.790000e-26 130.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G233800 chr5A 450159542 450164203 4661 False 8610.00 8610 100.00000 1 4662 1 chr5A.!!$F1 4661
1 TraesCS5A01G233800 chr5D 349861095 349864558 3463 False 2509.50 3273 92.89000 1110 4662 2 chr5D.!!$F1 3552
2 TraesCS5A01G233800 chr5B 410527661 410531227 3566 False 1329.75 1801 94.28125 1111 4662 4 chr5B.!!$F2 3551
3 TraesCS5A01G233800 chr1A 14247613 14248258 645 True 1024.00 1024 95.24500 63 710 1 chr1A.!!$R1 647

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
808 813 0.322187 AACCTTGGCGTGTGTATCCC 60.322 55.0 0.0 0.0 0.0 3.85 F
1090 1095 0.035343 AGTTCTAGGAAAAGCGGGCC 60.035 55.0 0.0 0.0 0.0 5.80 F
2132 2147 0.249911 GTGGCCCTATCAGCTTACCG 60.250 60.0 0.0 0.0 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2261 2276 0.167470 TCTACGCAAACTCGTCGAGG 59.833 55.0 25.25 10.18 43.15 4.63 R
2322 2337 0.978907 TTTGGAACGGAGGGAGTACC 59.021 55.0 0.00 0.00 40.67 3.34 R
3733 3948 0.234625 TGCTCTGCGCACTTTAAACG 59.765 50.0 5.66 0.00 45.47 3.60 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.044123 GTTGTTGCTATGAGGGGGAG 57.956 55.000 0.00 0.00 0.00 4.30
20 21 1.559682 GTTGTTGCTATGAGGGGGAGA 59.440 52.381 0.00 0.00 0.00 3.71
21 22 1.204146 TGTTGCTATGAGGGGGAGAC 58.796 55.000 0.00 0.00 0.00 3.36
57 58 7.227049 TGAATTAATCCTTTTGAAGTCCACC 57.773 36.000 0.00 0.00 0.00 4.61
58 59 6.780031 TGAATTAATCCTTTTGAAGTCCACCA 59.220 34.615 0.00 0.00 0.00 4.17
59 60 7.288852 TGAATTAATCCTTTTGAAGTCCACCAA 59.711 33.333 0.00 0.00 0.00 3.67
60 61 7.797121 ATTAATCCTTTTGAAGTCCACCAAT 57.203 32.000 0.00 0.00 0.00 3.16
61 62 5.728637 AATCCTTTTGAAGTCCACCAATC 57.271 39.130 0.00 0.00 0.00 2.67
90 91 5.906113 TTTGAGTGGTCAAGCAACTTAAA 57.094 34.783 0.00 0.00 43.66 1.52
130 131 6.575244 TTAGGGATACAAATGATGTCTGGT 57.425 37.500 0.00 0.00 42.70 4.00
131 132 7.684317 TTAGGGATACAAATGATGTCTGGTA 57.316 36.000 0.00 0.00 42.70 3.25
132 133 6.575244 AGGGATACAAATGATGTCTGGTAA 57.425 37.500 0.00 0.00 42.70 2.85
133 134 6.969043 AGGGATACAAATGATGTCTGGTAAA 58.031 36.000 0.00 0.00 42.70 2.01
134 135 7.410174 AGGGATACAAATGATGTCTGGTAAAA 58.590 34.615 0.00 0.00 42.70 1.52
135 136 7.557719 AGGGATACAAATGATGTCTGGTAAAAG 59.442 37.037 0.00 0.00 42.70 2.27
176 177 1.749063 GGCGGCCAAAAGCTAAAGTAT 59.251 47.619 15.62 0.00 43.05 2.12
299 304 0.475906 AGTTGCTGCTGAAGGTCCTT 59.524 50.000 2.95 2.95 0.00 3.36
310 315 6.480763 TGCTGAAGGTCCTTTATAATCACAA 58.519 36.000 5.36 0.00 0.00 3.33
329 334 5.007921 TCACAACTCAGATGTGTGATTGTTG 59.992 40.000 14.24 9.33 46.42 3.33
346 351 0.734309 TTGCCATGCAATCAGTAGCG 59.266 50.000 0.00 0.00 43.99 4.26
360 365 1.542030 AGTAGCGACCACAACTCTCTG 59.458 52.381 0.00 0.00 0.00 3.35
396 401 3.531538 CTGCTAAAGATAACGCCTCCAA 58.468 45.455 0.00 0.00 0.00 3.53
403 408 1.562672 ATAACGCCTCCAACCCTGCT 61.563 55.000 0.00 0.00 0.00 4.24
449 454 9.050601 GGTCTACCATCTCTTGAAAAGATATTG 57.949 37.037 0.00 0.00 43.83 1.90
505 510 0.478507 ATATAACTGCCACAGCCCCC 59.521 55.000 0.00 0.00 38.69 5.40
522 527 2.507769 CCGGTCGCCGTTTCTACC 60.508 66.667 15.38 0.00 46.80 3.18
607 612 0.969894 AAGCCGCACTTAGTCTCTGT 59.030 50.000 0.00 0.00 36.62 3.41
633 638 8.802267 TCTTGGGGTTTCAGTATTTAAAATCTG 58.198 33.333 13.39 13.39 0.00 2.90
635 640 6.033966 GGGGTTTCAGTATTTAAAATCTGCG 58.966 40.000 14.27 0.00 0.00 5.18
704 709 6.944290 AGACTGAAATTGATCCTCATGAACAA 59.056 34.615 0.00 2.12 39.68 2.83
710 715 6.923199 ATTGATCCTCATGAACAACCTTTT 57.077 33.333 0.00 0.00 38.40 2.27
711 716 5.710513 TGATCCTCATGAACAACCTTTTG 57.289 39.130 0.00 0.00 38.83 2.44
712 717 5.384336 TGATCCTCATGAACAACCTTTTGA 58.616 37.500 0.00 0.00 36.48 2.69
713 718 5.832595 TGATCCTCATGAACAACCTTTTGAA 59.167 36.000 0.00 0.00 36.48 2.69
714 719 5.772825 TCCTCATGAACAACCTTTTGAAG 57.227 39.130 0.00 0.00 36.48 3.02
715 720 5.200483 TCCTCATGAACAACCTTTTGAAGT 58.800 37.500 0.00 0.00 36.48 3.01
716 721 5.656416 TCCTCATGAACAACCTTTTGAAGTT 59.344 36.000 0.00 0.00 36.48 2.66
717 722 5.979517 CCTCATGAACAACCTTTTGAAGTTC 59.020 40.000 0.00 0.00 39.11 3.01
720 725 5.066968 TGAACAACCTTTTGAAGTTCACC 57.933 39.130 4.68 0.00 42.35 4.02
721 726 4.524714 TGAACAACCTTTTGAAGTTCACCA 59.475 37.500 4.68 0.00 42.35 4.17
722 727 5.011125 TGAACAACCTTTTGAAGTTCACCAA 59.989 36.000 4.68 0.84 42.35 3.67
723 728 5.675684 ACAACCTTTTGAAGTTCACCAAT 57.324 34.783 4.68 0.00 36.48 3.16
724 729 5.660460 ACAACCTTTTGAAGTTCACCAATC 58.340 37.500 4.68 0.00 36.48 2.67
725 730 5.422012 ACAACCTTTTGAAGTTCACCAATCT 59.578 36.000 4.68 0.00 36.48 2.40
726 731 6.070824 ACAACCTTTTGAAGTTCACCAATCTT 60.071 34.615 4.68 0.00 36.48 2.40
727 732 5.906073 ACCTTTTGAAGTTCACCAATCTTG 58.094 37.500 4.68 0.00 0.00 3.02
728 733 4.746611 CCTTTTGAAGTTCACCAATCTTGC 59.253 41.667 4.68 0.00 0.00 4.01
729 734 3.624326 TTGAAGTTCACCAATCTTGCG 57.376 42.857 4.68 0.00 0.00 4.85
730 735 2.571212 TGAAGTTCACCAATCTTGCGT 58.429 42.857 0.08 0.00 0.00 5.24
731 736 2.948979 TGAAGTTCACCAATCTTGCGTT 59.051 40.909 0.08 0.00 0.00 4.84
732 737 4.130857 TGAAGTTCACCAATCTTGCGTTA 58.869 39.130 0.08 0.00 0.00 3.18
733 738 4.213270 TGAAGTTCACCAATCTTGCGTTAG 59.787 41.667 0.08 0.00 0.00 2.34
734 739 3.740115 AGTTCACCAATCTTGCGTTAGT 58.260 40.909 0.00 0.00 0.00 2.24
735 740 4.890088 AGTTCACCAATCTTGCGTTAGTA 58.110 39.130 0.00 0.00 0.00 1.82
736 741 5.302360 AGTTCACCAATCTTGCGTTAGTAA 58.698 37.500 0.00 0.00 0.00 2.24
737 742 5.938125 AGTTCACCAATCTTGCGTTAGTAAT 59.062 36.000 0.00 0.00 0.00 1.89
738 743 6.430000 AGTTCACCAATCTTGCGTTAGTAATT 59.570 34.615 0.00 0.00 0.00 1.40
739 744 6.417191 TCACCAATCTTGCGTTAGTAATTC 57.583 37.500 0.00 0.00 0.00 2.17
740 745 5.935206 TCACCAATCTTGCGTTAGTAATTCA 59.065 36.000 0.00 0.00 0.00 2.57
741 746 6.597672 TCACCAATCTTGCGTTAGTAATTCAT 59.402 34.615 0.00 0.00 0.00 2.57
742 747 7.120579 TCACCAATCTTGCGTTAGTAATTCATT 59.879 33.333 0.00 0.00 0.00 2.57
743 748 7.754924 CACCAATCTTGCGTTAGTAATTCATTT 59.245 33.333 0.00 0.00 0.00 2.32
744 749 8.303876 ACCAATCTTGCGTTAGTAATTCATTTT 58.696 29.630 0.00 0.00 0.00 1.82
745 750 9.781834 CCAATCTTGCGTTAGTAATTCATTTTA 57.218 29.630 0.00 0.00 0.00 1.52
764 769 8.932791 TCATTTTAAGACTTTCGTGAGATAACC 58.067 33.333 0.00 0.00 41.60 2.85
765 770 8.717821 CATTTTAAGACTTTCGTGAGATAACCA 58.282 33.333 0.00 0.00 41.60 3.67
766 771 7.647907 TTTAAGACTTTCGTGAGATAACCAC 57.352 36.000 0.00 0.00 41.60 4.16
767 772 4.866508 AGACTTTCGTGAGATAACCACA 57.133 40.909 0.00 0.00 41.60 4.17
768 773 5.209818 AGACTTTCGTGAGATAACCACAA 57.790 39.130 0.00 0.00 41.60 3.33
769 774 4.989168 AGACTTTCGTGAGATAACCACAAC 59.011 41.667 0.00 0.00 41.60 3.32
770 775 4.699637 ACTTTCGTGAGATAACCACAACA 58.300 39.130 0.00 0.00 41.60 3.33
771 776 5.120399 ACTTTCGTGAGATAACCACAACAA 58.880 37.500 0.00 0.00 41.60 2.83
772 777 5.587043 ACTTTCGTGAGATAACCACAACAAA 59.413 36.000 0.00 0.00 41.60 2.83
773 778 5.666969 TTCGTGAGATAACCACAACAAAG 57.333 39.130 0.00 0.00 41.60 2.77
774 779 4.951254 TCGTGAGATAACCACAACAAAGA 58.049 39.130 0.00 0.00 34.36 2.52
775 780 4.748102 TCGTGAGATAACCACAACAAAGAC 59.252 41.667 0.00 0.00 34.36 3.01
776 781 4.376008 CGTGAGATAACCACAACAAAGACG 60.376 45.833 0.00 0.00 34.36 4.18
777 782 4.062293 TGAGATAACCACAACAAAGACGG 58.938 43.478 0.00 0.00 0.00 4.79
778 783 3.408634 AGATAACCACAACAAAGACGGG 58.591 45.455 0.00 0.00 0.00 5.28
779 784 3.071892 AGATAACCACAACAAAGACGGGA 59.928 43.478 0.00 0.00 0.00 5.14
780 785 1.675552 AACCACAACAAAGACGGGAG 58.324 50.000 0.00 0.00 0.00 4.30
795 800 3.939066 ACGGGAGTAGATTTCAACCTTG 58.061 45.455 0.00 0.00 44.60 3.61
796 801 3.270877 CGGGAGTAGATTTCAACCTTGG 58.729 50.000 0.00 0.00 0.00 3.61
797 802 3.017442 GGGAGTAGATTTCAACCTTGGC 58.983 50.000 0.00 0.00 0.00 4.52
798 803 2.678336 GGAGTAGATTTCAACCTTGGCG 59.322 50.000 0.00 0.00 0.00 5.69
799 804 3.335579 GAGTAGATTTCAACCTTGGCGT 58.664 45.455 0.00 0.00 0.00 5.68
800 805 3.074412 AGTAGATTTCAACCTTGGCGTG 58.926 45.455 0.00 0.00 0.00 5.34
801 806 1.981256 AGATTTCAACCTTGGCGTGT 58.019 45.000 0.00 0.00 0.00 4.49
802 807 1.608590 AGATTTCAACCTTGGCGTGTG 59.391 47.619 0.00 0.00 0.00 3.82
803 808 1.336755 GATTTCAACCTTGGCGTGTGT 59.663 47.619 0.00 0.00 0.00 3.72
804 809 2.039818 TTTCAACCTTGGCGTGTGTA 57.960 45.000 0.00 0.00 0.00 2.90
805 810 2.264005 TTCAACCTTGGCGTGTGTAT 57.736 45.000 0.00 0.00 0.00 2.29
806 811 1.803334 TCAACCTTGGCGTGTGTATC 58.197 50.000 0.00 0.00 0.00 2.24
807 812 0.802494 CAACCTTGGCGTGTGTATCC 59.198 55.000 0.00 0.00 0.00 2.59
808 813 0.322187 AACCTTGGCGTGTGTATCCC 60.322 55.000 0.00 0.00 0.00 3.85
809 814 1.198759 ACCTTGGCGTGTGTATCCCT 61.199 55.000 0.00 0.00 0.00 4.20
810 815 0.462047 CCTTGGCGTGTGTATCCCTC 60.462 60.000 0.00 0.00 0.00 4.30
811 816 0.462047 CTTGGCGTGTGTATCCCTCC 60.462 60.000 0.00 0.00 0.00 4.30
812 817 0.907704 TTGGCGTGTGTATCCCTCCT 60.908 55.000 0.00 0.00 0.00 3.69
813 818 1.144057 GGCGTGTGTATCCCTCCTG 59.856 63.158 0.00 0.00 0.00 3.86
814 819 1.521681 GCGTGTGTATCCCTCCTGC 60.522 63.158 0.00 0.00 0.00 4.85
815 820 1.144057 CGTGTGTATCCCTCCTGCC 59.856 63.158 0.00 0.00 0.00 4.85
816 821 1.144057 GTGTGTATCCCTCCTGCCG 59.856 63.158 0.00 0.00 0.00 5.69
817 822 1.305802 TGTGTATCCCTCCTGCCGT 60.306 57.895 0.00 0.00 0.00 5.68
818 823 1.327690 TGTGTATCCCTCCTGCCGTC 61.328 60.000 0.00 0.00 0.00 4.79
819 824 1.001120 TGTATCCCTCCTGCCGTCA 59.999 57.895 0.00 0.00 0.00 4.35
820 825 1.043116 TGTATCCCTCCTGCCGTCAG 61.043 60.000 0.00 0.00 40.02 3.51
838 843 4.388499 GTGGCACCGTCCGGATGT 62.388 66.667 22.05 13.01 38.96 3.06
839 844 3.632080 TGGCACCGTCCGGATGTT 61.632 61.111 22.05 5.22 38.96 2.71
840 845 3.124921 GGCACCGTCCGGATGTTG 61.125 66.667 22.05 19.24 38.96 3.33
841 846 2.358247 GCACCGTCCGGATGTTGT 60.358 61.111 20.86 10.94 38.96 3.32
842 847 2.388232 GCACCGTCCGGATGTTGTC 61.388 63.158 20.86 10.66 38.96 3.18
843 848 2.092291 CACCGTCCGGATGTTGTCG 61.092 63.158 22.05 12.60 38.96 4.35
844 849 2.260434 CCGTCCGGATGTTGTCGT 59.740 61.111 22.05 0.00 37.50 4.34
845 850 2.092291 CCGTCCGGATGTTGTCGTG 61.092 63.158 22.05 1.19 37.50 4.35
846 851 2.726691 CGTCCGGATGTTGTCGTGC 61.727 63.158 15.98 0.00 0.00 5.34
847 852 2.047655 TCCGGATGTTGTCGTGCC 60.048 61.111 0.00 0.00 0.00 5.01
848 853 3.487202 CCGGATGTTGTCGTGCCG 61.487 66.667 0.00 0.00 41.53 5.69
849 854 4.147322 CGGATGTTGTCGTGCCGC 62.147 66.667 0.00 0.00 35.17 6.53
850 855 3.047280 GGATGTTGTCGTGCCGCA 61.047 61.111 0.00 0.00 0.00 5.69
851 856 2.398554 GGATGTTGTCGTGCCGCAT 61.399 57.895 0.00 0.00 0.00 4.73
852 857 1.501741 GATGTTGTCGTGCCGCATT 59.498 52.632 0.00 0.00 0.00 3.56
853 858 0.794229 GATGTTGTCGTGCCGCATTG 60.794 55.000 0.00 0.00 0.00 2.82
854 859 1.233950 ATGTTGTCGTGCCGCATTGA 61.234 50.000 0.00 0.00 0.00 2.57
855 860 1.233950 TGTTGTCGTGCCGCATTGAT 61.234 50.000 0.00 0.00 0.00 2.57
856 861 0.724549 GTTGTCGTGCCGCATTGATA 59.275 50.000 0.00 0.00 0.00 2.15
857 862 1.330521 GTTGTCGTGCCGCATTGATAT 59.669 47.619 0.00 0.00 0.00 1.63
858 863 2.517650 TGTCGTGCCGCATTGATATA 57.482 45.000 0.00 0.00 0.00 0.86
859 864 2.131972 TGTCGTGCCGCATTGATATAC 58.868 47.619 0.00 0.00 0.00 1.47
860 865 1.124297 GTCGTGCCGCATTGATATACG 59.876 52.381 0.00 0.00 0.00 3.06
861 866 1.136690 CGTGCCGCATTGATATACGT 58.863 50.000 0.00 0.00 0.00 3.57
862 867 1.525197 CGTGCCGCATTGATATACGTT 59.475 47.619 0.00 0.00 0.00 3.99
863 868 2.033236 CGTGCCGCATTGATATACGTTT 60.033 45.455 0.00 0.00 0.00 3.60
864 869 3.545228 CGTGCCGCATTGATATACGTTTT 60.545 43.478 0.00 0.00 0.00 2.43
865 870 3.723764 GTGCCGCATTGATATACGTTTTG 59.276 43.478 0.00 0.00 0.00 2.44
866 871 3.623510 TGCCGCATTGATATACGTTTTGA 59.376 39.130 0.00 0.00 0.00 2.69
867 872 4.274705 TGCCGCATTGATATACGTTTTGAT 59.725 37.500 0.00 0.00 0.00 2.57
868 873 4.612614 GCCGCATTGATATACGTTTTGATG 59.387 41.667 0.00 0.00 0.00 3.07
869 874 5.146460 CCGCATTGATATACGTTTTGATGG 58.854 41.667 0.00 0.00 0.00 3.51
870 875 5.049749 CCGCATTGATATACGTTTTGATGGA 60.050 40.000 0.00 0.00 0.00 3.41
871 876 5.845953 CGCATTGATATACGTTTTGATGGAC 59.154 40.000 0.00 0.00 0.00 4.02
872 877 6.510960 CGCATTGATATACGTTTTGATGGACA 60.511 38.462 0.00 0.00 0.00 4.02
873 878 7.362662 GCATTGATATACGTTTTGATGGACAT 58.637 34.615 0.00 0.00 0.00 3.06
874 879 8.503196 GCATTGATATACGTTTTGATGGACATA 58.497 33.333 0.00 0.00 0.00 2.29
877 882 9.771534 TTGATATACGTTTTGATGGACATATCA 57.228 29.630 0.00 0.00 35.38 2.15
878 883 9.771534 TGATATACGTTTTGATGGACATATCAA 57.228 29.630 0.00 0.00 43.32 2.57
881 886 8.675705 ATACGTTTTGATGGACATATCAATCA 57.324 30.769 0.00 0.00 42.61 2.57
882 887 6.785191 ACGTTTTGATGGACATATCAATCAC 58.215 36.000 0.00 0.00 43.77 3.06
883 888 6.599244 ACGTTTTGATGGACATATCAATCACT 59.401 34.615 0.00 0.00 43.77 3.41
884 889 7.121168 ACGTTTTGATGGACATATCAATCACTT 59.879 33.333 0.00 0.00 43.77 3.16
885 890 7.641411 CGTTTTGATGGACATATCAATCACTTC 59.359 37.037 0.00 0.00 43.77 3.01
886 891 8.680903 GTTTTGATGGACATATCAATCACTTCT 58.319 33.333 0.00 0.00 43.77 2.85
887 892 8.442632 TTTGATGGACATATCAATCACTTCTC 57.557 34.615 0.00 0.00 43.77 2.87
888 893 6.528321 TGATGGACATATCAATCACTTCTCC 58.472 40.000 0.00 0.00 39.92 3.71
889 894 5.296151 TGGACATATCAATCACTTCTCCC 57.704 43.478 0.00 0.00 0.00 4.30
890 895 4.202253 TGGACATATCAATCACTTCTCCCG 60.202 45.833 0.00 0.00 0.00 5.14
891 896 4.202264 GGACATATCAATCACTTCTCCCGT 60.202 45.833 0.00 0.00 0.00 5.28
892 897 5.359194 ACATATCAATCACTTCTCCCGTT 57.641 39.130 0.00 0.00 0.00 4.44
893 898 5.118990 ACATATCAATCACTTCTCCCGTTG 58.881 41.667 0.00 0.00 0.00 4.10
894 899 1.808411 TCAATCACTTCTCCCGTTGC 58.192 50.000 0.00 0.00 0.00 4.17
895 900 1.071542 TCAATCACTTCTCCCGTTGCA 59.928 47.619 0.00 0.00 0.00 4.08
896 901 1.879380 CAATCACTTCTCCCGTTGCAA 59.121 47.619 0.00 0.00 0.00 4.08
897 902 1.523758 ATCACTTCTCCCGTTGCAAC 58.476 50.000 19.89 19.89 0.00 4.17
906 911 2.666862 CGTTGCAACGCAGGGGTA 60.667 61.111 35.89 0.00 46.06 3.69
907 912 2.038269 CGTTGCAACGCAGGGGTAT 61.038 57.895 35.89 0.00 46.06 2.73
908 913 0.741574 CGTTGCAACGCAGGGGTATA 60.742 55.000 35.89 0.00 46.06 1.47
909 914 1.675552 GTTGCAACGCAGGGGTATAT 58.324 50.000 14.90 0.00 40.61 0.86
910 915 1.333619 GTTGCAACGCAGGGGTATATG 59.666 52.381 14.90 0.00 40.61 1.78
911 916 0.544223 TGCAACGCAGGGGTATATGT 59.456 50.000 0.00 0.00 33.32 2.29
912 917 0.944386 GCAACGCAGGGGTATATGTG 59.056 55.000 0.00 0.00 0.00 3.21
913 918 1.593196 CAACGCAGGGGTATATGTGG 58.407 55.000 0.00 0.00 0.00 4.17
914 919 1.134220 CAACGCAGGGGTATATGTGGT 60.134 52.381 0.00 0.00 0.00 4.16
915 920 2.091098 ACGCAGGGGTATATGTGGTA 57.909 50.000 0.00 0.00 0.00 3.25
916 921 1.968493 ACGCAGGGGTATATGTGGTAG 59.032 52.381 0.00 0.00 0.00 3.18
917 922 1.275291 CGCAGGGGTATATGTGGTAGG 59.725 57.143 0.00 0.00 0.00 3.18
918 923 2.335933 GCAGGGGTATATGTGGTAGGT 58.664 52.381 0.00 0.00 0.00 3.08
919 924 2.709397 GCAGGGGTATATGTGGTAGGTT 59.291 50.000 0.00 0.00 0.00 3.50
920 925 3.137728 GCAGGGGTATATGTGGTAGGTTT 59.862 47.826 0.00 0.00 0.00 3.27
921 926 4.385977 GCAGGGGTATATGTGGTAGGTTTT 60.386 45.833 0.00 0.00 0.00 2.43
922 927 5.762279 CAGGGGTATATGTGGTAGGTTTTT 58.238 41.667 0.00 0.00 0.00 1.94
966 971 3.837213 AAAACTCTGCATCCACAATCG 57.163 42.857 0.00 0.00 0.00 3.34
967 972 2.768253 AACTCTGCATCCACAATCGA 57.232 45.000 0.00 0.00 0.00 3.59
968 973 2.768253 ACTCTGCATCCACAATCGAA 57.232 45.000 0.00 0.00 0.00 3.71
969 974 3.272574 ACTCTGCATCCACAATCGAAT 57.727 42.857 0.00 0.00 0.00 3.34
970 975 2.941064 ACTCTGCATCCACAATCGAATG 59.059 45.455 0.00 0.00 0.00 2.67
971 976 2.941064 CTCTGCATCCACAATCGAATGT 59.059 45.455 0.00 0.00 0.00 2.71
972 977 2.938451 TCTGCATCCACAATCGAATGTC 59.062 45.455 2.35 0.00 0.00 3.06
973 978 2.679336 CTGCATCCACAATCGAATGTCA 59.321 45.455 2.35 0.00 0.00 3.58
974 979 3.080319 TGCATCCACAATCGAATGTCAA 58.920 40.909 2.35 0.00 0.00 3.18
975 980 3.505293 TGCATCCACAATCGAATGTCAAA 59.495 39.130 2.35 0.00 0.00 2.69
976 981 4.158209 TGCATCCACAATCGAATGTCAAAT 59.842 37.500 2.35 0.00 0.00 2.32
977 982 5.104374 GCATCCACAATCGAATGTCAAATT 58.896 37.500 2.35 0.00 0.00 1.82
978 983 5.005012 GCATCCACAATCGAATGTCAAATTG 59.995 40.000 2.35 0.00 35.68 2.32
979 984 5.058149 TCCACAATCGAATGTCAAATTGG 57.942 39.130 2.35 1.13 34.23 3.16
980 985 4.764308 TCCACAATCGAATGTCAAATTGGA 59.236 37.500 2.35 3.69 34.23 3.53
981 986 4.858692 CCACAATCGAATGTCAAATTGGAC 59.141 41.667 2.35 5.98 38.29 4.02
982 987 4.858692 CACAATCGAATGTCAAATTGGACC 59.141 41.667 10.55 0.00 36.97 4.46
983 988 4.522405 ACAATCGAATGTCAAATTGGACCA 59.478 37.500 10.55 0.00 36.97 4.02
984 989 5.010516 ACAATCGAATGTCAAATTGGACCAA 59.989 36.000 9.92 9.92 36.97 3.67
985 990 5.720371 ATCGAATGTCAAATTGGACCAAA 57.280 34.783 11.82 0.00 36.97 3.28
986 991 5.720371 TCGAATGTCAAATTGGACCAAAT 57.280 34.783 11.82 0.00 36.97 2.32
987 992 6.095432 TCGAATGTCAAATTGGACCAAATT 57.905 33.333 11.82 6.32 36.97 1.82
988 993 6.155827 TCGAATGTCAAATTGGACCAAATTC 58.844 36.000 11.82 12.97 36.97 2.17
989 994 5.348451 CGAATGTCAAATTGGACCAAATTCC 59.652 40.000 11.82 2.89 36.97 3.01
990 995 5.822132 ATGTCAAATTGGACCAAATTCCA 57.178 34.783 11.82 8.47 44.39 3.53
1001 1006 6.393990 TGGACCAAATTCCAAATACAAATCG 58.606 36.000 0.00 0.00 43.04 3.34
1002 1007 6.209589 TGGACCAAATTCCAAATACAAATCGA 59.790 34.615 0.00 0.00 43.04 3.59
1003 1008 6.530181 GGACCAAATTCCAAATACAAATCGAC 59.470 38.462 0.00 0.00 35.49 4.20
1004 1009 6.394809 ACCAAATTCCAAATACAAATCGACC 58.605 36.000 0.00 0.00 0.00 4.79
1005 1010 5.810074 CCAAATTCCAAATACAAATCGACCC 59.190 40.000 0.00 0.00 0.00 4.46
1006 1011 4.893424 ATTCCAAATACAAATCGACCCG 57.107 40.909 0.00 0.00 0.00 5.28
1007 1012 2.011222 TCCAAATACAAATCGACCCGC 58.989 47.619 0.00 0.00 0.00 6.13
1008 1013 2.014128 CCAAATACAAATCGACCCGCT 58.986 47.619 0.00 0.00 0.00 5.52
1009 1014 3.118702 TCCAAATACAAATCGACCCGCTA 60.119 43.478 0.00 0.00 0.00 4.26
1010 1015 3.001939 CCAAATACAAATCGACCCGCTAC 59.998 47.826 0.00 0.00 0.00 3.58
1011 1016 2.129823 ATACAAATCGACCCGCTACG 57.870 50.000 0.00 0.00 0.00 3.51
1013 1018 2.202837 AAATCGACCCGCTACGGC 60.203 61.111 0.00 0.00 46.86 5.68
1014 1019 3.728279 AAATCGACCCGCTACGGCC 62.728 63.158 0.00 0.00 46.86 6.13
1028 1033 2.747686 GGCCTCCCGAAACTGTGA 59.252 61.111 0.00 0.00 0.00 3.58
1029 1034 1.072505 GGCCTCCCGAAACTGTGAA 59.927 57.895 0.00 0.00 0.00 3.18
1030 1035 0.536460 GGCCTCCCGAAACTGTGAAA 60.536 55.000 0.00 0.00 0.00 2.69
1031 1036 1.314730 GCCTCCCGAAACTGTGAAAA 58.685 50.000 0.00 0.00 0.00 2.29
1032 1037 1.001706 GCCTCCCGAAACTGTGAAAAC 60.002 52.381 0.00 0.00 0.00 2.43
1033 1038 1.263217 CCTCCCGAAACTGTGAAAACG 59.737 52.381 0.00 0.00 0.00 3.60
1034 1039 1.263217 CTCCCGAAACTGTGAAAACGG 59.737 52.381 0.00 0.00 40.03 4.44
1035 1040 3.837669 CCGAAACTGTGAAAACGGG 57.162 52.632 0.00 0.00 37.28 5.28
1036 1041 0.317519 CCGAAACTGTGAAAACGGGC 60.318 55.000 0.00 0.00 37.28 6.13
1037 1042 0.317519 CGAAACTGTGAAAACGGGCC 60.318 55.000 0.00 0.00 0.00 5.80
1038 1043 0.317519 GAAACTGTGAAAACGGGCCG 60.318 55.000 27.06 27.06 0.00 6.13
1039 1044 2.344521 AAACTGTGAAAACGGGCCGC 62.345 55.000 28.71 10.46 0.00 6.53
1040 1045 4.038080 CTGTGAAAACGGGCCGCC 62.038 66.667 28.71 13.46 0.00 6.13
1053 1058 2.108976 CCGCCGTGGCACTATCAT 59.891 61.111 16.72 0.00 42.06 2.45
1054 1059 2.246739 CCGCCGTGGCACTATCATG 61.247 63.158 16.72 0.00 42.06 3.07
1055 1060 2.246739 CGCCGTGGCACTATCATGG 61.247 63.158 16.72 9.29 42.58 3.66
1056 1061 1.893808 GCCGTGGCACTATCATGGG 60.894 63.158 16.72 8.54 40.63 4.00
1057 1062 1.893808 CCGTGGCACTATCATGGGC 60.894 63.158 16.72 0.00 37.58 5.36
1058 1063 1.893808 CGTGGCACTATCATGGGCC 60.894 63.158 16.72 0.00 46.58 5.80
1060 1065 4.164258 GGCACTATCATGGGCCAC 57.836 61.111 9.28 0.00 45.70 5.01
1061 1066 1.227102 GGCACTATCATGGGCCACA 59.773 57.895 9.28 0.00 45.70 4.17
1062 1067 0.395586 GGCACTATCATGGGCCACAA 60.396 55.000 9.28 0.00 45.70 3.33
1063 1068 1.027357 GCACTATCATGGGCCACAAG 58.973 55.000 9.28 6.54 0.00 3.16
1064 1069 1.027357 CACTATCATGGGCCACAAGC 58.973 55.000 9.28 0.00 42.60 4.01
1065 1070 0.921896 ACTATCATGGGCCACAAGCT 59.078 50.000 9.28 0.00 43.05 3.74
1066 1071 1.315690 CTATCATGGGCCACAAGCTG 58.684 55.000 9.28 2.21 43.05 4.24
1067 1072 0.918258 TATCATGGGCCACAAGCTGA 59.082 50.000 9.28 9.15 43.05 4.26
1068 1073 0.395311 ATCATGGGCCACAAGCTGAG 60.395 55.000 9.28 0.00 43.05 3.35
1069 1074 2.362120 ATGGGCCACAAGCTGAGC 60.362 61.111 9.28 0.00 43.05 4.26
1070 1075 3.214190 ATGGGCCACAAGCTGAGCA 62.214 57.895 9.28 0.00 43.05 4.26
1071 1076 2.598394 GGGCCACAAGCTGAGCAA 60.598 61.111 7.39 0.00 43.05 3.91
1072 1077 2.633509 GGGCCACAAGCTGAGCAAG 61.634 63.158 7.39 0.08 43.05 4.01
1073 1078 1.900498 GGCCACAAGCTGAGCAAGT 60.900 57.895 7.39 0.83 43.05 3.16
1074 1079 1.458639 GGCCACAAGCTGAGCAAGTT 61.459 55.000 7.39 0.00 43.05 2.66
1075 1080 0.039708 GCCACAAGCTGAGCAAGTTC 60.040 55.000 7.39 0.00 38.99 3.01
1076 1081 1.602311 CCACAAGCTGAGCAAGTTCT 58.398 50.000 7.39 0.00 0.00 3.01
1077 1082 2.771089 CCACAAGCTGAGCAAGTTCTA 58.229 47.619 7.39 0.00 0.00 2.10
1078 1083 2.740981 CCACAAGCTGAGCAAGTTCTAG 59.259 50.000 7.39 0.00 0.00 2.43
1079 1084 2.740981 CACAAGCTGAGCAAGTTCTAGG 59.259 50.000 7.39 0.00 0.00 3.02
1080 1085 2.634940 ACAAGCTGAGCAAGTTCTAGGA 59.365 45.455 7.39 0.00 0.00 2.94
1081 1086 3.071602 ACAAGCTGAGCAAGTTCTAGGAA 59.928 43.478 7.39 0.00 0.00 3.36
1082 1087 4.067896 CAAGCTGAGCAAGTTCTAGGAAA 58.932 43.478 7.39 0.00 0.00 3.13
1083 1088 4.357918 AGCTGAGCAAGTTCTAGGAAAA 57.642 40.909 7.39 0.00 0.00 2.29
1084 1089 4.322567 AGCTGAGCAAGTTCTAGGAAAAG 58.677 43.478 7.39 0.00 0.00 2.27
1085 1090 3.120025 GCTGAGCAAGTTCTAGGAAAAGC 60.120 47.826 0.00 0.00 0.00 3.51
1086 1091 3.067106 TGAGCAAGTTCTAGGAAAAGCG 58.933 45.455 0.00 0.00 0.00 4.68
1087 1092 2.416893 GAGCAAGTTCTAGGAAAAGCGG 59.583 50.000 0.00 0.00 0.00 5.52
1088 1093 1.468914 GCAAGTTCTAGGAAAAGCGGG 59.531 52.381 0.00 0.00 0.00 6.13
1089 1094 1.468914 CAAGTTCTAGGAAAAGCGGGC 59.531 52.381 0.00 0.00 0.00 6.13
1090 1095 0.035343 AGTTCTAGGAAAAGCGGGCC 60.035 55.000 0.00 0.00 0.00 5.80
1091 1096 1.078708 TTCTAGGAAAAGCGGGCCG 60.079 57.895 24.35 24.35 0.00 6.13
1114 1119 3.712907 GCACTACGGGCCTCCCAA 61.713 66.667 0.84 0.00 45.83 4.12
1362 1369 1.842381 AACCCTCTCTTCCGCCCAAG 61.842 60.000 0.00 0.00 0.00 3.61
1395 1402 2.436173 GAGAAATTCGGGGAGGATGTCT 59.564 50.000 0.00 0.00 0.00 3.41
1647 1654 9.838339 TCATATTCCCTTGTTCTATTCTTCTTC 57.162 33.333 0.00 0.00 0.00 2.87
1648 1655 9.844257 CATATTCCCTTGTTCTATTCTTCTTCT 57.156 33.333 0.00 0.00 0.00 2.85
1650 1657 8.800370 ATTCCCTTGTTCTATTCTTCTTCTTC 57.200 34.615 0.00 0.00 0.00 2.87
1655 1662 7.663493 CCTTGTTCTATTCTTCTTCTTCTGGTT 59.337 37.037 0.00 0.00 0.00 3.67
1757 1769 2.034879 CAGACGGCCGAAATGTGCT 61.035 57.895 35.90 6.14 0.00 4.40
1760 1772 4.817063 CGGCCGAAATGTGCTGCG 62.817 66.667 24.07 0.00 0.00 5.18
1862 1874 6.071784 TGGTTAGAGAATTCGCTGTGTAAGTA 60.072 38.462 20.50 0.00 0.00 2.24
1916 1928 2.280183 GCTGTTCGACGATGAGATGAAC 59.720 50.000 0.00 0.00 37.71 3.18
2038 2050 1.202114 ACGGTATGGCACTTGCATTTG 59.798 47.619 3.15 0.00 44.36 2.32
2039 2051 1.202114 CGGTATGGCACTTGCATTTGT 59.798 47.619 3.15 0.00 44.36 2.83
2060 2075 7.894376 TTGTAGTTTATTTCTTAGGTCGGTG 57.106 36.000 0.00 0.00 0.00 4.94
2132 2147 0.249911 GTGGCCCTATCAGCTTACCG 60.250 60.000 0.00 0.00 0.00 4.02
2167 2182 3.550437 ACCTGTGAGGATATGTTGAGC 57.450 47.619 0.00 0.00 37.67 4.26
2196 2211 9.109393 GCTATATGTTTCAGGATGTGTTCTAAA 57.891 33.333 0.00 0.00 37.40 1.85
2264 2279 2.611292 GCAGTGTGCATAGTTCATCCTC 59.389 50.000 0.00 0.00 44.26 3.71
2300 2315 7.808856 GCGTAGATAAACTCTGAACCTTATAGG 59.191 40.741 0.00 0.00 37.08 2.57
2317 2332 4.724279 ATAGGTTGAACCAACAGGAGTT 57.276 40.909 17.83 0.00 45.11 3.01
2322 2337 5.359860 AGGTTGAACCAACAGGAGTTAAAAG 59.640 40.000 17.83 0.00 45.11 2.27
2323 2338 5.451381 GGTTGAACCAACAGGAGTTAAAAGG 60.451 44.000 9.98 0.00 45.11 3.11
2324 2339 4.862371 TGAACCAACAGGAGTTAAAAGGT 58.138 39.130 0.00 0.00 35.85 3.50
2325 2340 6.003859 TGAACCAACAGGAGTTAAAAGGTA 57.996 37.500 0.00 0.00 35.85 3.08
2326 2341 5.824097 TGAACCAACAGGAGTTAAAAGGTAC 59.176 40.000 0.00 0.00 35.85 3.34
2327 2342 5.641789 ACCAACAGGAGTTAAAAGGTACT 57.358 39.130 0.00 0.00 36.59 2.73
2328 2343 5.618236 ACCAACAGGAGTTAAAAGGTACTC 58.382 41.667 0.00 0.00 40.00 2.59
2334 2349 4.120792 GAGTTAAAAGGTACTCCCTCCG 57.879 50.000 0.00 0.00 45.47 4.63
2335 2350 3.513119 GAGTTAAAAGGTACTCCCTCCGT 59.487 47.826 0.00 0.00 45.47 4.69
2336 2351 3.906218 AGTTAAAAGGTACTCCCTCCGTT 59.094 43.478 0.00 0.00 45.47 4.44
2337 2352 4.020751 AGTTAAAAGGTACTCCCTCCGTTC 60.021 45.833 0.00 0.00 45.47 3.95
2338 2353 1.273759 AAAGGTACTCCCTCCGTTCC 58.726 55.000 0.00 0.00 45.47 3.62
2339 2354 0.115745 AAGGTACTCCCTCCGTTCCA 59.884 55.000 0.00 0.00 45.47 3.53
2340 2355 0.115745 AGGTACTCCCTCCGTTCCAA 59.884 55.000 0.00 0.00 40.71 3.53
2341 2356 0.978907 GGTACTCCCTCCGTTCCAAA 59.021 55.000 0.00 0.00 0.00 3.28
2342 2357 1.348696 GGTACTCCCTCCGTTCCAAAA 59.651 52.381 0.00 0.00 0.00 2.44
2343 2358 2.026542 GGTACTCCCTCCGTTCCAAAAT 60.027 50.000 0.00 0.00 0.00 1.82
2344 2359 3.198417 GGTACTCCCTCCGTTCCAAAATA 59.802 47.826 0.00 0.00 0.00 1.40
2345 2360 3.629142 ACTCCCTCCGTTCCAAAATAG 57.371 47.619 0.00 0.00 0.00 1.73
2346 2361 3.178865 ACTCCCTCCGTTCCAAAATAGA 58.821 45.455 0.00 0.00 0.00 1.98
2347 2362 3.780850 ACTCCCTCCGTTCCAAAATAGAT 59.219 43.478 0.00 0.00 0.00 1.98
2348 2363 4.130118 CTCCCTCCGTTCCAAAATAGATG 58.870 47.826 0.00 0.00 0.00 2.90
2349 2364 3.778075 TCCCTCCGTTCCAAAATAGATGA 59.222 43.478 0.00 0.00 0.00 2.92
2350 2365 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2351 2366 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2352 2367 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2353 2368 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2354 2369 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2355 2370 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2356 2371 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2357 2372 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2358 2373 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2359 2374 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2360 2375 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2361 2376 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2362 2377 9.403583 TCCAAAATAGATGACCCAACTTTATAC 57.596 33.333 0.00 0.00 0.00 1.47
2363 2378 9.408648 CCAAAATAGATGACCCAACTTTATACT 57.591 33.333 0.00 0.00 0.00 2.12
2392 2407 9.490083 AGTTAGTACTATAAAGTTGGGTCATCT 57.510 33.333 2.79 0.00 37.15 2.90
2399 2414 9.408648 ACTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 29.00 3.28
2400 2415 9.627123 CTATAAAGTTGGGTCATCTATTTTGGA 57.373 33.333 0.00 0.00 0.00 3.53
2401 2416 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2402 2417 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2403 2418 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2404 2419 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2405 2420 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2406 2421 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2407 2422 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2408 2423 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2409 2424 3.118038 TCATCTATTTTGGAACGGAGGGG 60.118 47.826 0.00 0.00 0.00 4.79
2532 2708 9.334947 AGTATCATATGCATACATCCTAAATGC 57.665 33.333 8.99 0.00 44.94 3.56
2533 2709 9.334947 GTATCATATGCATACATCCTAAATGCT 57.665 33.333 8.99 0.00 44.96 3.79
2535 2711 8.953368 TCATATGCATACATCCTAAATGCTAG 57.047 34.615 8.99 0.00 44.96 3.42
2616 2798 8.922058 ATTATTTGATGTCTTGCTGCTTTTAG 57.078 30.769 0.00 0.00 0.00 1.85
2617 2799 5.772825 TTTGATGTCTTGCTGCTTTTAGT 57.227 34.783 0.00 0.00 0.00 2.24
2652 2834 8.984891 TTTTTAAGTTGCTACATCATTGATGG 57.015 30.769 26.14 13.31 43.60 3.51
2656 2838 4.277672 AGTTGCTACATCATTGATGGCATC 59.722 41.667 26.14 20.52 43.60 3.91
2740 2922 3.548268 GCACTTACTCTCATACTCGTTGC 59.452 47.826 0.00 0.00 0.00 4.17
2847 3029 5.249852 ACTGGTATGCTACTTGTCCCTTTTA 59.750 40.000 0.00 0.00 0.00 1.52
2977 3162 2.644798 ACTAACAACATGCTCCTCCCTT 59.355 45.455 0.00 0.00 0.00 3.95
2988 3173 0.614979 TCCTCCCTTGAGTCCCTTCG 60.615 60.000 0.00 0.00 36.86 3.79
3002 3187 5.497474 AGTCCCTTCGTGCTATTAAATTGT 58.503 37.500 0.00 0.00 0.00 2.71
3028 3213 5.300286 AGAGTAATAGCAAATGTGAATGCCC 59.700 40.000 0.00 0.00 43.57 5.36
3055 3240 8.766994 ATGCTGTATTAATTTGTAAGGACCAT 57.233 30.769 0.00 0.00 0.00 3.55
3096 3281 3.491447 CGATACCATCTGTCATGCTGTCA 60.491 47.826 0.00 0.00 0.00 3.58
3106 3291 1.202794 TCATGCTGTCAAGTTGGCTGA 60.203 47.619 17.46 5.84 0.00 4.26
3108 3293 0.107263 TGCTGTCAAGTTGGCTGACA 60.107 50.000 17.46 11.67 39.85 3.58
3181 3366 2.757868 AGAGCGAGATAGAAACAGCACT 59.242 45.455 0.00 0.00 0.00 4.40
3184 3369 2.784380 GCGAGATAGAAACAGCACTACG 59.216 50.000 0.00 0.00 0.00 3.51
3247 3434 3.026694 ACCTGGCAAATTATGAAGGAGC 58.973 45.455 0.00 0.00 37.67 4.70
3269 3456 2.232452 AGATGATGCTATACAGACCGGC 59.768 50.000 0.00 0.00 0.00 6.13
3392 3579 9.949174 TGTATAATGTATTTATGCAGTTGCTTG 57.051 29.630 5.62 0.00 37.79 4.01
3453 3640 7.967908 TGAGAAAGGAAAGAAGACAGAGTTAT 58.032 34.615 0.00 0.00 0.00 1.89
3503 3716 4.936802 ACTCTTATCTAGACCACCAGTGT 58.063 43.478 0.00 0.00 0.00 3.55
3509 3722 2.832129 TCTAGACCACCAGTGTGAATCC 59.168 50.000 0.00 0.00 45.76 3.01
3534 3747 6.903479 CCAACTTGTTACGTTAAGAACTGTTC 59.097 38.462 12.54 12.54 0.00 3.18
3538 3751 8.408601 ACTTGTTACGTTAAGAACTGTTCTCTA 58.591 33.333 22.24 13.80 39.61 2.43
3655 3868 2.163010 CAGCCTTTTCGTTCTCATGCAT 59.837 45.455 0.00 0.00 0.00 3.96
3699 3912 3.028850 CTGATTGCACCCTGATCCATTT 58.971 45.455 0.00 0.00 0.00 2.32
3733 3948 6.763610 AGAAAAATCTCCCTGATTCGTCATAC 59.236 38.462 0.00 0.00 43.99 2.39
3749 3964 3.122278 GTCATACGTTTAAAGTGCGCAGA 59.878 43.478 12.22 0.00 0.00 4.26
3787 4002 2.490217 GCTGCAGGCAAGCATCTG 59.510 61.111 17.12 0.00 44.68 2.90
3803 4018 1.557099 TCTGTCTGGCAGTTATCGGT 58.443 50.000 15.27 0.00 45.23 4.69
3809 4024 2.236146 TCTGGCAGTTATCGGTGTCATT 59.764 45.455 15.27 0.00 0.00 2.57
3811 4026 2.290008 TGGCAGTTATCGGTGTCATTGT 60.290 45.455 0.00 0.00 0.00 2.71
3834 4077 7.279615 TGTTCTGAATTTGGACTTTCTGTCTA 58.720 34.615 0.00 0.00 44.74 2.59
3937 4180 1.066143 GGAGGAGATCGAGTTTTGCCA 60.066 52.381 0.00 0.00 0.00 4.92
3939 4182 1.625818 AGGAGATCGAGTTTTGCCAGT 59.374 47.619 0.00 0.00 0.00 4.00
3952 4195 2.049156 CCAGTGACGAAGCGCTCA 60.049 61.111 12.06 0.32 0.00 4.26
3962 4205 2.844072 GAAGCGCTCAGGTCCTCACC 62.844 65.000 12.06 0.00 44.19 4.02
3963 4206 3.695606 GCGCTCAGGTCCTCACCA 61.696 66.667 0.00 0.00 46.68 4.17
4147 4393 1.271871 GGATGGGACCACACATGACAA 60.272 52.381 0.00 0.00 40.57 3.18
4176 4422 5.761726 TCTGATGCACTGTGATGATTATTCC 59.238 40.000 12.86 0.00 0.00 3.01
4203 4449 8.804912 AGTTCTCATCTAATCAATTTGCTTCT 57.195 30.769 0.00 0.00 0.00 2.85
4211 4457 8.114331 TCTAATCAATTTGCTTCTGTCATGTT 57.886 30.769 0.00 0.00 0.00 2.71
4218 4464 2.143122 GCTTCTGTCATGTTGTCCGAA 58.857 47.619 0.00 0.00 0.00 4.30
4298 4545 2.816087 TCCAAGCAGAATTGAGAAGCAC 59.184 45.455 0.00 0.00 31.55 4.40
4299 4546 2.555325 CCAAGCAGAATTGAGAAGCACA 59.445 45.455 0.00 0.00 31.55 4.57
4307 4554 2.479566 TTGAGAAGCACAGGATGGTC 57.520 50.000 0.00 0.00 43.62 4.02
4319 4567 0.688087 GGATGGTCGGAGGGAGAAGT 60.688 60.000 0.00 0.00 0.00 3.01
4323 4571 1.104630 GGTCGGAGGGAGAAGTACAG 58.895 60.000 0.00 0.00 0.00 2.74
4361 4609 1.803555 GACTCTGCCTTTTCTGCTCAC 59.196 52.381 0.00 0.00 0.00 3.51
4381 4629 7.232534 TGCTCACAAAATAAGGGTACTGAAATT 59.767 33.333 0.00 0.00 0.00 1.82
4450 4698 9.687210 GAAGTATGATATGTTACATCCGTACAA 57.313 33.333 21.02 0.31 0.00 2.41
4565 4813 7.106239 CCACTCACTACATCTTTCACCTAATT 58.894 38.462 0.00 0.00 0.00 1.40
4566 4814 8.258007 CCACTCACTACATCTTTCACCTAATTA 58.742 37.037 0.00 0.00 0.00 1.40
4611 4859 6.145371 CGAAACATCAATTTCAAACCCGAAAT 59.855 34.615 0.00 0.00 45.35 2.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.559682 TCTCCCCCTCATAGCAACAAC 59.440 52.381 0.00 0.00 0.00 3.32
1 2 1.559682 GTCTCCCCCTCATAGCAACAA 59.440 52.381 0.00 0.00 0.00 2.83
2 3 1.204146 GTCTCCCCCTCATAGCAACA 58.796 55.000 0.00 0.00 0.00 3.33
3 4 0.470341 GGTCTCCCCCTCATAGCAAC 59.530 60.000 0.00 0.00 0.00 4.17
4 5 0.343372 AGGTCTCCCCCTCATAGCAA 59.657 55.000 0.00 0.00 0.00 3.91
5 6 0.343372 AAGGTCTCCCCCTCATAGCA 59.657 55.000 0.00 0.00 32.13 3.49
6 7 2.400467 TAAGGTCTCCCCCTCATAGC 57.600 55.000 0.00 0.00 32.13 2.97
7 8 8.680820 TTAATTATAAGGTCTCCCCCTCATAG 57.319 38.462 0.00 0.00 32.13 2.23
8 9 9.057911 CATTAATTATAAGGTCTCCCCCTCATA 57.942 37.037 0.00 0.00 32.13 2.15
9 10 7.744068 TCATTAATTATAAGGTCTCCCCCTCAT 59.256 37.037 0.00 0.00 32.13 2.90
10 11 7.086260 TCATTAATTATAAGGTCTCCCCCTCA 58.914 38.462 0.00 0.00 32.13 3.86
11 12 7.569599 TCATTAATTATAAGGTCTCCCCCTC 57.430 40.000 0.00 0.00 32.13 4.30
12 13 7.964730 TTCATTAATTATAAGGTCTCCCCCT 57.035 36.000 0.00 0.00 35.96 4.79
31 32 8.314021 GGTGGACTTCAAAAGGATTAATTCATT 58.686 33.333 0.00 0.00 0.00 2.57
32 33 7.454380 TGGTGGACTTCAAAAGGATTAATTCAT 59.546 33.333 0.00 0.00 0.00 2.57
33 34 6.780031 TGGTGGACTTCAAAAGGATTAATTCA 59.220 34.615 0.00 0.00 0.00 2.57
34 35 7.227049 TGGTGGACTTCAAAAGGATTAATTC 57.773 36.000 0.00 0.00 0.00 2.17
35 36 7.610580 TTGGTGGACTTCAAAAGGATTAATT 57.389 32.000 0.00 0.00 0.00 1.40
36 37 7.675619 AGATTGGTGGACTTCAAAAGGATTAAT 59.324 33.333 0.00 0.00 0.00 1.40
37 38 7.010160 AGATTGGTGGACTTCAAAAGGATTAA 58.990 34.615 0.00 0.00 0.00 1.40
38 39 6.552008 AGATTGGTGGACTTCAAAAGGATTA 58.448 36.000 0.00 0.00 0.00 1.75
39 40 5.397360 AGATTGGTGGACTTCAAAAGGATT 58.603 37.500 0.00 0.00 0.00 3.01
40 41 5.003096 AGATTGGTGGACTTCAAAAGGAT 57.997 39.130 0.00 0.00 0.00 3.24
41 42 4.453480 AGATTGGTGGACTTCAAAAGGA 57.547 40.909 0.00 0.00 0.00 3.36
42 43 5.535753 AAAGATTGGTGGACTTCAAAAGG 57.464 39.130 0.00 0.00 0.00 3.11
71 72 5.334182 GCTAGTTTAAGTTGCTTGACCACTC 60.334 44.000 0.00 0.00 0.00 3.51
90 91 9.311676 GTATCCCTAAACTTATTCCTAGCTAGT 57.688 37.037 19.31 3.84 0.00 2.57
108 109 7.684317 TTACCAGACATCATTTGTATCCCTA 57.316 36.000 0.00 0.00 39.18 3.53
130 131 9.092876 CATGTTTGGCTTTCTGTTTTACTTTTA 57.907 29.630 0.00 0.00 0.00 1.52
131 132 7.065683 CCATGTTTGGCTTTCTGTTTTACTTTT 59.934 33.333 0.00 0.00 35.85 2.27
132 133 6.538381 CCATGTTTGGCTTTCTGTTTTACTTT 59.462 34.615 0.00 0.00 35.85 2.66
133 134 6.048509 CCATGTTTGGCTTTCTGTTTTACTT 58.951 36.000 0.00 0.00 35.85 2.24
134 135 5.600696 CCATGTTTGGCTTTCTGTTTTACT 58.399 37.500 0.00 0.00 35.85 2.24
135 136 5.905480 CCATGTTTGGCTTTCTGTTTTAC 57.095 39.130 0.00 0.00 35.85 2.01
310 315 2.816087 GGCAACAATCACACATCTGAGT 59.184 45.455 0.00 0.00 0.00 3.41
329 334 0.305922 GTCGCTACTGATTGCATGGC 59.694 55.000 0.00 0.00 0.00 4.40
346 351 1.230324 GTTGCCAGAGAGTTGTGGTC 58.770 55.000 0.00 0.00 39.87 4.02
360 365 1.079612 GCAGCAGATTTGGGTTGCC 60.080 57.895 0.00 0.00 38.58 4.52
396 401 2.959465 ACTTGAAGCTTTAGCAGGGT 57.041 45.000 0.00 0.00 45.16 4.34
403 408 3.325716 ACCCGGAAGTACTTGAAGCTTTA 59.674 43.478 14.14 0.00 0.00 1.85
449 454 1.545582 TGCTTATTTGGGTGCTTCTGC 59.454 47.619 0.00 0.00 40.20 4.26
522 527 2.512286 ATGTGGATGCTGCCGTCG 60.512 61.111 0.00 0.00 0.00 5.12
607 612 8.802267 CAGATTTTAAATACTGAAACCCCAAGA 58.198 33.333 13.43 0.00 32.90 3.02
633 638 3.516578 AGGTACTTGCTTGACTCGC 57.483 52.632 0.00 0.00 27.25 5.03
704 709 5.682212 GCAAGATTGGTGAACTTCAAAAGGT 60.682 40.000 0.00 0.00 0.00 3.50
710 715 2.571212 ACGCAAGATTGGTGAACTTCA 58.429 42.857 0.00 0.00 43.62 3.02
711 716 3.626028 AACGCAAGATTGGTGAACTTC 57.374 42.857 0.00 0.00 43.62 3.01
712 717 4.134563 ACTAACGCAAGATTGGTGAACTT 58.865 39.130 0.00 0.00 43.62 2.66
713 718 3.740115 ACTAACGCAAGATTGGTGAACT 58.260 40.909 0.00 0.00 43.62 3.01
714 719 5.600908 TTACTAACGCAAGATTGGTGAAC 57.399 39.130 0.00 0.00 43.62 3.18
715 720 6.428465 TGAATTACTAACGCAAGATTGGTGAA 59.572 34.615 0.00 0.00 43.62 3.18
716 721 5.935206 TGAATTACTAACGCAAGATTGGTGA 59.065 36.000 0.00 0.00 43.62 4.02
717 722 6.176975 TGAATTACTAACGCAAGATTGGTG 57.823 37.500 0.00 0.00 43.62 4.17
718 723 7.391148 AATGAATTACTAACGCAAGATTGGT 57.609 32.000 0.00 0.00 43.62 3.67
719 724 8.687824 AAAATGAATTACTAACGCAAGATTGG 57.312 30.769 0.00 0.00 43.62 3.16
749 754 5.666969 TTGTTGTGGTTATCTCACGAAAG 57.333 39.130 0.00 0.00 37.91 2.62
750 755 5.818336 TCTTTGTTGTGGTTATCTCACGAAA 59.182 36.000 0.00 0.00 37.91 3.46
751 756 5.235616 GTCTTTGTTGTGGTTATCTCACGAA 59.764 40.000 0.00 0.00 37.91 3.85
752 757 4.748102 GTCTTTGTTGTGGTTATCTCACGA 59.252 41.667 0.00 0.00 37.91 4.35
753 758 4.376008 CGTCTTTGTTGTGGTTATCTCACG 60.376 45.833 0.00 0.00 37.91 4.35
754 759 4.084013 CCGTCTTTGTTGTGGTTATCTCAC 60.084 45.833 0.00 0.00 35.82 3.51
755 760 4.062293 CCGTCTTTGTTGTGGTTATCTCA 58.938 43.478 0.00 0.00 0.00 3.27
756 761 3.435671 CCCGTCTTTGTTGTGGTTATCTC 59.564 47.826 0.00 0.00 0.00 2.75
757 762 3.071892 TCCCGTCTTTGTTGTGGTTATCT 59.928 43.478 0.00 0.00 0.00 1.98
758 763 3.404899 TCCCGTCTTTGTTGTGGTTATC 58.595 45.455 0.00 0.00 0.00 1.75
759 764 3.181448 ACTCCCGTCTTTGTTGTGGTTAT 60.181 43.478 0.00 0.00 0.00 1.89
760 765 2.171027 ACTCCCGTCTTTGTTGTGGTTA 59.829 45.455 0.00 0.00 0.00 2.85
761 766 1.064979 ACTCCCGTCTTTGTTGTGGTT 60.065 47.619 0.00 0.00 0.00 3.67
762 767 0.544697 ACTCCCGTCTTTGTTGTGGT 59.455 50.000 0.00 0.00 0.00 4.16
763 768 2.036733 TCTACTCCCGTCTTTGTTGTGG 59.963 50.000 0.00 0.00 0.00 4.17
764 769 3.380479 TCTACTCCCGTCTTTGTTGTG 57.620 47.619 0.00 0.00 0.00 3.33
765 770 4.618920 AATCTACTCCCGTCTTTGTTGT 57.381 40.909 0.00 0.00 0.00 3.32
766 771 4.994852 TGAAATCTACTCCCGTCTTTGTTG 59.005 41.667 0.00 0.00 0.00 3.33
767 772 5.223449 TGAAATCTACTCCCGTCTTTGTT 57.777 39.130 0.00 0.00 0.00 2.83
768 773 4.884668 TGAAATCTACTCCCGTCTTTGT 57.115 40.909 0.00 0.00 0.00 2.83
769 774 4.392138 GGTTGAAATCTACTCCCGTCTTTG 59.608 45.833 0.00 0.00 0.00 2.77
770 775 4.286291 AGGTTGAAATCTACTCCCGTCTTT 59.714 41.667 0.00 0.00 0.00 2.52
771 776 3.838903 AGGTTGAAATCTACTCCCGTCTT 59.161 43.478 0.00 0.00 0.00 3.01
772 777 3.442076 AGGTTGAAATCTACTCCCGTCT 58.558 45.455 0.00 0.00 0.00 4.18
773 778 3.889520 AGGTTGAAATCTACTCCCGTC 57.110 47.619 0.00 0.00 0.00 4.79
774 779 3.307480 CCAAGGTTGAAATCTACTCCCGT 60.307 47.826 0.00 0.00 0.00 5.28
775 780 3.270877 CCAAGGTTGAAATCTACTCCCG 58.729 50.000 0.00 0.00 0.00 5.14
776 781 3.017442 GCCAAGGTTGAAATCTACTCCC 58.983 50.000 0.00 0.00 0.00 4.30
777 782 2.678336 CGCCAAGGTTGAAATCTACTCC 59.322 50.000 0.00 0.00 0.00 3.85
778 783 3.125316 CACGCCAAGGTTGAAATCTACTC 59.875 47.826 0.00 0.00 0.00 2.59
779 784 3.074412 CACGCCAAGGTTGAAATCTACT 58.926 45.455 0.00 0.00 0.00 2.57
780 785 2.812011 ACACGCCAAGGTTGAAATCTAC 59.188 45.455 0.00 0.00 0.00 2.59
781 786 2.811431 CACACGCCAAGGTTGAAATCTA 59.189 45.455 0.00 0.00 0.00 1.98
782 787 1.608590 CACACGCCAAGGTTGAAATCT 59.391 47.619 0.00 0.00 0.00 2.40
783 788 1.336755 ACACACGCCAAGGTTGAAATC 59.663 47.619 0.00 0.00 0.00 2.17
784 789 1.398692 ACACACGCCAAGGTTGAAAT 58.601 45.000 0.00 0.00 0.00 2.17
785 790 2.039818 TACACACGCCAAGGTTGAAA 57.960 45.000 0.00 0.00 0.00 2.69
786 791 2.147958 GATACACACGCCAAGGTTGAA 58.852 47.619 0.00 0.00 0.00 2.69
787 792 1.609580 GGATACACACGCCAAGGTTGA 60.610 52.381 0.00 0.00 0.00 3.18
788 793 0.802494 GGATACACACGCCAAGGTTG 59.198 55.000 0.00 0.00 0.00 3.77
789 794 0.322187 GGGATACACACGCCAAGGTT 60.322 55.000 0.00 0.00 39.74 3.50
790 795 1.198759 AGGGATACACACGCCAAGGT 61.199 55.000 0.00 0.00 39.74 3.50
791 796 0.462047 GAGGGATACACACGCCAAGG 60.462 60.000 0.00 0.00 39.74 3.61
792 797 0.462047 GGAGGGATACACACGCCAAG 60.462 60.000 0.00 0.00 41.57 3.61
793 798 0.907704 AGGAGGGATACACACGCCAA 60.908 55.000 0.00 0.00 44.42 4.52
794 799 1.305802 AGGAGGGATACACACGCCA 60.306 57.895 0.00 0.00 44.42 5.69
795 800 1.144057 CAGGAGGGATACACACGCC 59.856 63.158 0.00 0.00 42.28 5.68
796 801 1.521681 GCAGGAGGGATACACACGC 60.522 63.158 0.00 0.00 39.74 5.34
797 802 1.144057 GGCAGGAGGGATACACACG 59.856 63.158 0.00 0.00 39.74 4.49
798 803 1.144057 CGGCAGGAGGGATACACAC 59.856 63.158 0.00 0.00 39.74 3.82
799 804 1.305802 ACGGCAGGAGGGATACACA 60.306 57.895 0.00 0.00 39.74 3.72
800 805 1.327690 TGACGGCAGGAGGGATACAC 61.328 60.000 0.00 0.00 39.74 2.90
801 806 1.001120 TGACGGCAGGAGGGATACA 59.999 57.895 0.00 0.00 39.74 2.29
802 807 1.742768 CTGACGGCAGGAGGGATAC 59.257 63.158 11.57 0.00 38.51 2.24
803 808 4.277552 CTGACGGCAGGAGGGATA 57.722 61.111 11.57 0.00 38.51 2.59
821 826 3.894547 AACATCCGGACGGTGCCAC 62.895 63.158 6.12 0.00 36.47 5.01
822 827 3.632080 AACATCCGGACGGTGCCA 61.632 61.111 6.12 0.00 36.47 4.92
823 828 3.124921 CAACATCCGGACGGTGCC 61.125 66.667 6.12 0.00 36.47 5.01
824 829 2.358247 ACAACATCCGGACGGTGC 60.358 61.111 16.97 0.00 36.47 5.01
825 830 2.092291 CGACAACATCCGGACGGTG 61.092 63.158 15.28 15.28 36.47 4.94
826 831 2.260434 CGACAACATCCGGACGGT 59.740 61.111 6.12 5.31 36.47 4.83
827 832 2.092291 CACGACAACATCCGGACGG 61.092 63.158 6.12 4.50 0.00 4.79
828 833 2.726691 GCACGACAACATCCGGACG 61.727 63.158 6.12 7.44 0.00 4.79
829 834 2.388232 GGCACGACAACATCCGGAC 61.388 63.158 6.12 0.00 0.00 4.79
830 835 2.047655 GGCACGACAACATCCGGA 60.048 61.111 6.61 6.61 0.00 5.14
843 848 3.602390 AAACGTATATCAATGCGGCAC 57.398 42.857 4.03 0.00 44.42 5.01
844 849 3.623510 TCAAAACGTATATCAATGCGGCA 59.376 39.130 4.58 4.58 44.42 5.69
845 850 4.203950 TCAAAACGTATATCAATGCGGC 57.796 40.909 0.00 0.00 44.42 6.53
846 851 5.049749 TCCATCAAAACGTATATCAATGCGG 60.050 40.000 0.00 0.00 44.42 5.69
847 852 5.845953 GTCCATCAAAACGTATATCAATGCG 59.154 40.000 0.00 0.00 45.46 4.73
848 853 6.724263 TGTCCATCAAAACGTATATCAATGC 58.276 36.000 0.00 0.00 0.00 3.56
851 856 9.771534 TGATATGTCCATCAAAACGTATATCAA 57.228 29.630 7.52 0.00 34.91 2.57
852 857 9.771534 TTGATATGTCCATCAAAACGTATATCA 57.228 29.630 6.34 6.34 40.95 2.15
855 860 9.771534 TGATTGATATGTCCATCAAAACGTATA 57.228 29.630 4.04 0.00 45.46 1.47
856 861 8.559536 GTGATTGATATGTCCATCAAAACGTAT 58.440 33.333 7.65 0.00 45.46 3.06
857 862 7.768582 AGTGATTGATATGTCCATCAAAACGTA 59.231 33.333 7.65 0.00 45.46 3.57
858 863 6.599244 AGTGATTGATATGTCCATCAAAACGT 59.401 34.615 7.65 0.00 45.46 3.99
859 864 7.019774 AGTGATTGATATGTCCATCAAAACG 57.980 36.000 7.65 0.00 45.46 3.60
860 865 8.680903 AGAAGTGATTGATATGTCCATCAAAAC 58.319 33.333 7.65 3.43 45.46 2.43
861 866 8.812513 AGAAGTGATTGATATGTCCATCAAAA 57.187 30.769 7.65 0.00 45.46 2.44
862 867 7.500227 GGAGAAGTGATTGATATGTCCATCAAA 59.500 37.037 7.65 0.00 45.46 2.69
863 868 6.994496 GGAGAAGTGATTGATATGTCCATCAA 59.006 38.462 7.65 0.00 46.15 2.57
864 869 6.464892 GGGAGAAGTGATTGATATGTCCATCA 60.465 42.308 2.54 2.54 34.99 3.07
865 870 5.936956 GGGAGAAGTGATTGATATGTCCATC 59.063 44.000 0.00 0.00 0.00 3.51
866 871 5.512060 CGGGAGAAGTGATTGATATGTCCAT 60.512 44.000 0.00 0.00 0.00 3.41
867 872 4.202253 CGGGAGAAGTGATTGATATGTCCA 60.202 45.833 0.00 0.00 0.00 4.02
868 873 4.202264 ACGGGAGAAGTGATTGATATGTCC 60.202 45.833 0.00 0.00 0.00 4.02
869 874 4.950050 ACGGGAGAAGTGATTGATATGTC 58.050 43.478 0.00 0.00 0.00 3.06
870 875 5.118990 CAACGGGAGAAGTGATTGATATGT 58.881 41.667 0.00 0.00 0.00 2.29
871 876 4.024556 GCAACGGGAGAAGTGATTGATATG 60.025 45.833 0.00 0.00 0.00 1.78
872 877 4.130118 GCAACGGGAGAAGTGATTGATAT 58.870 43.478 0.00 0.00 0.00 1.63
873 878 3.055458 TGCAACGGGAGAAGTGATTGATA 60.055 43.478 0.00 0.00 0.00 2.15
874 879 2.290260 TGCAACGGGAGAAGTGATTGAT 60.290 45.455 0.00 0.00 0.00 2.57
875 880 1.071542 TGCAACGGGAGAAGTGATTGA 59.928 47.619 0.00 0.00 0.00 2.57
876 881 1.522668 TGCAACGGGAGAAGTGATTG 58.477 50.000 0.00 0.00 0.00 2.67
877 882 1.880027 GTTGCAACGGGAGAAGTGATT 59.120 47.619 14.90 0.00 0.00 2.57
878 883 1.523758 GTTGCAACGGGAGAAGTGAT 58.476 50.000 14.90 0.00 0.00 3.06
879 884 3.000815 GTTGCAACGGGAGAAGTGA 57.999 52.632 14.90 0.00 0.00 3.41
890 895 1.333619 CATATACCCCTGCGTTGCAAC 59.666 52.381 19.89 19.89 38.41 4.17
891 896 1.065053 ACATATACCCCTGCGTTGCAA 60.065 47.619 0.00 0.00 38.41 4.08
892 897 0.544223 ACATATACCCCTGCGTTGCA 59.456 50.000 0.00 0.00 36.92 4.08
893 898 0.944386 CACATATACCCCTGCGTTGC 59.056 55.000 0.00 0.00 0.00 4.17
894 899 1.134220 ACCACATATACCCCTGCGTTG 60.134 52.381 0.00 0.00 0.00 4.10
895 900 1.209621 ACCACATATACCCCTGCGTT 58.790 50.000 0.00 0.00 0.00 4.84
896 901 1.968493 CTACCACATATACCCCTGCGT 59.032 52.381 0.00 0.00 0.00 5.24
897 902 1.275291 CCTACCACATATACCCCTGCG 59.725 57.143 0.00 0.00 0.00 5.18
898 903 2.335933 ACCTACCACATATACCCCTGC 58.664 52.381 0.00 0.00 0.00 4.85
899 904 5.382664 AAAACCTACCACATATACCCCTG 57.617 43.478 0.00 0.00 0.00 4.45
945 950 3.820467 TCGATTGTGGATGCAGAGTTTTT 59.180 39.130 0.00 0.00 0.00 1.94
946 951 3.411446 TCGATTGTGGATGCAGAGTTTT 58.589 40.909 0.00 0.00 0.00 2.43
947 952 3.057969 TCGATTGTGGATGCAGAGTTT 57.942 42.857 0.00 0.00 0.00 2.66
948 953 2.768253 TCGATTGTGGATGCAGAGTT 57.232 45.000 0.00 0.00 0.00 3.01
949 954 2.768253 TTCGATTGTGGATGCAGAGT 57.232 45.000 0.00 0.00 0.00 3.24
950 955 2.941064 ACATTCGATTGTGGATGCAGAG 59.059 45.455 11.92 0.00 0.00 3.35
951 956 2.938451 GACATTCGATTGTGGATGCAGA 59.062 45.455 17.08 0.00 0.00 4.26
952 957 2.679336 TGACATTCGATTGTGGATGCAG 59.321 45.455 17.08 0.00 0.00 4.41
953 958 2.709213 TGACATTCGATTGTGGATGCA 58.291 42.857 17.08 6.24 0.00 3.96
954 959 3.763097 TTGACATTCGATTGTGGATGC 57.237 42.857 17.08 3.80 0.00 3.91
955 960 5.517411 CCAATTTGACATTCGATTGTGGATG 59.483 40.000 17.08 4.38 0.00 3.51
956 961 5.418524 TCCAATTTGACATTCGATTGTGGAT 59.581 36.000 17.08 5.98 0.00 3.41
957 962 4.764308 TCCAATTTGACATTCGATTGTGGA 59.236 37.500 17.08 12.83 0.00 4.02
958 963 4.858692 GTCCAATTTGACATTCGATTGTGG 59.141 41.667 17.08 10.91 35.29 4.17
959 964 4.858692 GGTCCAATTTGACATTCGATTGTG 59.141 41.667 17.08 4.69 36.97 3.33
960 965 4.522405 TGGTCCAATTTGACATTCGATTGT 59.478 37.500 12.50 12.50 36.97 2.71
961 966 5.058149 TGGTCCAATTTGACATTCGATTG 57.942 39.130 11.43 5.78 36.97 2.67
962 967 5.720371 TTGGTCCAATTTGACATTCGATT 57.280 34.783 11.43 0.00 36.97 3.34
963 968 5.720371 TTTGGTCCAATTTGACATTCGAT 57.280 34.783 4.80 0.00 36.97 3.59
964 969 5.720371 ATTTGGTCCAATTTGACATTCGA 57.280 34.783 4.80 0.00 36.97 3.71
965 970 5.348451 GGAATTTGGTCCAATTTGACATTCG 59.652 40.000 14.93 0.00 37.65 3.34
966 971 6.229733 TGGAATTTGGTCCAATTTGACATTC 58.770 36.000 14.93 13.85 44.91 2.67
967 972 6.185114 TGGAATTTGGTCCAATTTGACATT 57.815 33.333 14.93 6.57 44.91 2.71
968 973 5.822132 TGGAATTTGGTCCAATTTGACAT 57.178 34.783 14.93 0.00 44.91 3.06
977 982 6.209589 TCGATTTGTATTTGGAATTTGGTCCA 59.790 34.615 0.00 0.00 46.24 4.02
978 983 6.530181 GTCGATTTGTATTTGGAATTTGGTCC 59.470 38.462 0.00 0.00 38.27 4.46
979 984 6.530181 GGTCGATTTGTATTTGGAATTTGGTC 59.470 38.462 0.00 0.00 0.00 4.02
980 985 6.394809 GGTCGATTTGTATTTGGAATTTGGT 58.605 36.000 0.00 0.00 0.00 3.67
981 986 5.810074 GGGTCGATTTGTATTTGGAATTTGG 59.190 40.000 0.00 0.00 0.00 3.28
982 987 5.514914 CGGGTCGATTTGTATTTGGAATTTG 59.485 40.000 0.00 0.00 0.00 2.32
983 988 5.646606 CGGGTCGATTTGTATTTGGAATTT 58.353 37.500 0.00 0.00 0.00 1.82
984 989 4.439563 GCGGGTCGATTTGTATTTGGAATT 60.440 41.667 0.00 0.00 0.00 2.17
985 990 3.066203 GCGGGTCGATTTGTATTTGGAAT 59.934 43.478 0.00 0.00 0.00 3.01
986 991 2.420722 GCGGGTCGATTTGTATTTGGAA 59.579 45.455 0.00 0.00 0.00 3.53
987 992 2.011222 GCGGGTCGATTTGTATTTGGA 58.989 47.619 0.00 0.00 0.00 3.53
988 993 2.014128 AGCGGGTCGATTTGTATTTGG 58.986 47.619 0.00 0.00 0.00 3.28
989 994 3.302221 CGTAGCGGGTCGATTTGTATTTG 60.302 47.826 0.00 0.00 0.00 2.32
990 995 2.861935 CGTAGCGGGTCGATTTGTATTT 59.138 45.455 0.00 0.00 0.00 1.40
991 996 2.466846 CGTAGCGGGTCGATTTGTATT 58.533 47.619 0.00 0.00 0.00 1.89
992 997 1.269413 CCGTAGCGGGTCGATTTGTAT 60.269 52.381 0.00 0.00 44.15 2.29
993 998 0.101040 CCGTAGCGGGTCGATTTGTA 59.899 55.000 0.00 0.00 44.15 2.41
994 999 1.153706 CCGTAGCGGGTCGATTTGT 60.154 57.895 0.00 0.00 44.15 2.83
995 1000 3.700961 CCGTAGCGGGTCGATTTG 58.299 61.111 0.00 0.00 44.15 2.32
1005 1010 4.137872 TTTCGGGAGGCCGTAGCG 62.138 66.667 0.00 0.00 41.24 4.26
1006 1011 2.510918 GTTTCGGGAGGCCGTAGC 60.511 66.667 0.00 0.00 38.76 3.58
1007 1012 1.153628 CAGTTTCGGGAGGCCGTAG 60.154 63.158 0.00 0.00 34.52 3.51
1008 1013 1.909781 ACAGTTTCGGGAGGCCGTA 60.910 57.895 0.00 0.00 34.52 4.02
1009 1014 3.239253 ACAGTTTCGGGAGGCCGT 61.239 61.111 0.00 0.00 34.52 5.68
1010 1015 2.725203 TTCACAGTTTCGGGAGGCCG 62.725 60.000 0.00 0.00 0.00 6.13
1011 1016 0.536460 TTTCACAGTTTCGGGAGGCC 60.536 55.000 0.00 0.00 0.00 5.19
1012 1017 1.001706 GTTTTCACAGTTTCGGGAGGC 60.002 52.381 0.00 0.00 0.00 4.70
1013 1018 1.263217 CGTTTTCACAGTTTCGGGAGG 59.737 52.381 0.00 0.00 0.00 4.30
1014 1019 1.263217 CCGTTTTCACAGTTTCGGGAG 59.737 52.381 0.00 0.00 35.25 4.30
1015 1020 1.301423 CCGTTTTCACAGTTTCGGGA 58.699 50.000 0.00 0.00 35.25 5.14
1016 1021 3.837669 CCGTTTTCACAGTTTCGGG 57.162 52.632 0.00 0.00 35.25 5.14
1017 1022 0.317519 GCCCGTTTTCACAGTTTCGG 60.318 55.000 0.00 0.00 38.05 4.30
1018 1023 0.317519 GGCCCGTTTTCACAGTTTCG 60.318 55.000 0.00 0.00 0.00 3.46
1019 1024 0.317519 CGGCCCGTTTTCACAGTTTC 60.318 55.000 0.00 0.00 0.00 2.78
1020 1025 1.731093 CGGCCCGTTTTCACAGTTT 59.269 52.632 0.00 0.00 0.00 2.66
1021 1026 2.841160 GCGGCCCGTTTTCACAGTT 61.841 57.895 4.45 0.00 0.00 3.16
1022 1027 3.284449 GCGGCCCGTTTTCACAGT 61.284 61.111 4.45 0.00 0.00 3.55
1023 1028 4.038080 GGCGGCCCGTTTTCACAG 62.038 66.667 8.12 0.00 0.00 3.66
1036 1041 2.108976 ATGATAGTGCCACGGCGG 59.891 61.111 13.24 0.00 45.51 6.13
1037 1042 2.246739 CCATGATAGTGCCACGGCG 61.247 63.158 4.80 4.80 45.51 6.46
1038 1043 1.893808 CCCATGATAGTGCCACGGC 60.894 63.158 0.00 0.00 42.35 5.68
1039 1044 1.893808 GCCCATGATAGTGCCACGG 60.894 63.158 0.00 0.00 0.00 4.94
1040 1045 1.893808 GGCCCATGATAGTGCCACG 60.894 63.158 0.00 0.00 43.46 4.94
1041 1046 4.164258 GGCCCATGATAGTGCCAC 57.836 61.111 0.00 0.00 43.46 5.01
1043 1048 0.395586 TTGTGGCCCATGATAGTGCC 60.396 55.000 0.00 0.00 44.27 5.01
1044 1049 1.027357 CTTGTGGCCCATGATAGTGC 58.973 55.000 0.00 0.00 0.00 4.40
1045 1050 1.027357 GCTTGTGGCCCATGATAGTG 58.973 55.000 0.00 0.00 34.27 2.74
1046 1051 0.921896 AGCTTGTGGCCCATGATAGT 59.078 50.000 0.00 0.00 43.05 2.12
1047 1052 1.134007 TCAGCTTGTGGCCCATGATAG 60.134 52.381 0.00 0.00 43.05 2.08
1048 1053 0.918258 TCAGCTTGTGGCCCATGATA 59.082 50.000 0.00 0.00 43.05 2.15
1049 1054 0.395311 CTCAGCTTGTGGCCCATGAT 60.395 55.000 0.00 0.00 43.05 2.45
1050 1055 1.001764 CTCAGCTTGTGGCCCATGA 60.002 57.895 0.00 0.00 43.05 3.07
1051 1056 2.707849 GCTCAGCTTGTGGCCCATG 61.708 63.158 0.00 1.32 43.05 3.66
1052 1057 2.362120 GCTCAGCTTGTGGCCCAT 60.362 61.111 0.00 0.00 43.05 4.00
1053 1058 3.433984 TTGCTCAGCTTGTGGCCCA 62.434 57.895 0.00 0.00 43.05 5.36
1054 1059 2.598394 TTGCTCAGCTTGTGGCCC 60.598 61.111 0.00 0.00 43.05 5.80
1055 1060 1.458639 AACTTGCTCAGCTTGTGGCC 61.459 55.000 0.00 0.00 43.05 5.36
1056 1061 0.039708 GAACTTGCTCAGCTTGTGGC 60.040 55.000 0.00 0.00 42.19 5.01
1057 1062 1.602311 AGAACTTGCTCAGCTTGTGG 58.398 50.000 0.00 0.00 0.00 4.17
1058 1063 2.740981 CCTAGAACTTGCTCAGCTTGTG 59.259 50.000 0.00 0.00 0.00 3.33
1059 1064 2.634940 TCCTAGAACTTGCTCAGCTTGT 59.365 45.455 0.00 0.00 0.00 3.16
1060 1065 3.325293 TCCTAGAACTTGCTCAGCTTG 57.675 47.619 0.00 0.00 0.00 4.01
1061 1066 4.357918 TTTCCTAGAACTTGCTCAGCTT 57.642 40.909 0.00 0.00 0.00 3.74
1062 1067 4.322567 CTTTTCCTAGAACTTGCTCAGCT 58.677 43.478 0.00 0.00 0.00 4.24
1063 1068 3.120025 GCTTTTCCTAGAACTTGCTCAGC 60.120 47.826 0.00 0.00 0.00 4.26
1064 1069 3.124297 CGCTTTTCCTAGAACTTGCTCAG 59.876 47.826 0.00 0.00 0.00 3.35
1065 1070 3.067106 CGCTTTTCCTAGAACTTGCTCA 58.933 45.455 0.00 0.00 0.00 4.26
1066 1071 2.416893 CCGCTTTTCCTAGAACTTGCTC 59.583 50.000 0.00 0.00 0.00 4.26
1067 1072 2.427506 CCGCTTTTCCTAGAACTTGCT 58.572 47.619 0.00 0.00 0.00 3.91
1068 1073 1.468914 CCCGCTTTTCCTAGAACTTGC 59.531 52.381 0.00 0.00 0.00 4.01
1069 1074 1.468914 GCCCGCTTTTCCTAGAACTTG 59.531 52.381 0.00 0.00 0.00 3.16
1070 1075 1.613520 GGCCCGCTTTTCCTAGAACTT 60.614 52.381 0.00 0.00 0.00 2.66
1071 1076 0.035343 GGCCCGCTTTTCCTAGAACT 60.035 55.000 0.00 0.00 0.00 3.01
1072 1077 1.366854 CGGCCCGCTTTTCCTAGAAC 61.367 60.000 0.00 0.00 0.00 3.01
1073 1078 1.078708 CGGCCCGCTTTTCCTAGAA 60.079 57.895 0.00 0.00 0.00 2.10
1074 1079 2.582436 CGGCCCGCTTTTCCTAGA 59.418 61.111 0.00 0.00 0.00 2.43
1104 1109 3.373565 CAAAGCGTTGGGAGGCCC 61.374 66.667 0.00 0.00 45.71 5.80
1114 1119 0.661020 CTGGAAACGAACCAAAGCGT 59.339 50.000 0.00 0.00 43.39 5.07
1362 1369 1.352156 AATTTCTCGACGCGTGGAGC 61.352 55.000 36.94 15.29 43.95 4.70
1700 1712 0.807496 GAAGACATGGTTGCAGCTCC 59.193 55.000 0.00 0.00 0.00 4.70
1747 1759 3.982424 GACGCCGCAGCACATTTCG 62.982 63.158 0.00 0.00 39.83 3.46
1799 1811 3.248602 GCTCATCATCATCAAACCGGTAC 59.751 47.826 8.00 0.00 0.00 3.34
1862 1874 2.614987 GGAGCAAGTCAGCAAGATCTGT 60.615 50.000 0.00 0.00 36.85 3.41
1916 1928 5.070981 TCCTGATAACAGAGGGCAATTCTAG 59.929 44.000 0.79 0.00 46.03 2.43
2014 2026 2.013400 TGCAAGTGCCATACCGTATTG 58.987 47.619 0.00 0.00 41.18 1.90
2038 2050 7.895975 AACACCGACCTAAGAAATAAACTAC 57.104 36.000 0.00 0.00 0.00 2.73
2105 2120 1.496429 CTGATAGGGCCACAAGGGAAT 59.504 52.381 6.18 0.00 40.01 3.01
2106 2121 0.918983 CTGATAGGGCCACAAGGGAA 59.081 55.000 6.18 0.00 40.01 3.97
2132 2147 4.394729 TCACAGGTTCACATTCCTTAACC 58.605 43.478 0.00 0.00 41.41 2.85
2167 2182 6.932356 ACACATCCTGAAACATATAGCAAG 57.068 37.500 0.00 0.00 0.00 4.01
2196 2211 8.834465 GCATCACTCTAAATCATGTGTTAGAAT 58.166 33.333 16.40 8.45 36.24 2.40
2261 2276 0.167470 TCTACGCAAACTCGTCGAGG 59.833 55.000 25.25 10.18 43.15 4.63
2264 2279 3.850273 AGTTTATCTACGCAAACTCGTCG 59.150 43.478 0.00 0.00 40.12 5.12
2300 2315 5.126545 ACCTTTTAACTCCTGTTGGTTCAAC 59.873 40.000 4.04 4.04 43.78 3.18
2322 2337 0.978907 TTTGGAACGGAGGGAGTACC 59.021 55.000 0.00 0.00 40.67 3.34
2323 2338 2.845363 TTTTGGAACGGAGGGAGTAC 57.155 50.000 0.00 0.00 0.00 2.73
2324 2339 4.355549 TCTATTTTGGAACGGAGGGAGTA 58.644 43.478 0.00 0.00 0.00 2.59
2325 2340 3.178865 TCTATTTTGGAACGGAGGGAGT 58.821 45.455 0.00 0.00 0.00 3.85
2326 2341 3.906720 TCTATTTTGGAACGGAGGGAG 57.093 47.619 0.00 0.00 0.00 4.30
2327 2342 3.778075 TCATCTATTTTGGAACGGAGGGA 59.222 43.478 0.00 0.00 0.00 4.20
2328 2343 3.877508 GTCATCTATTTTGGAACGGAGGG 59.122 47.826 0.00 0.00 0.00 4.30
2329 2344 3.877508 GGTCATCTATTTTGGAACGGAGG 59.122 47.826 0.00 0.00 0.00 4.30
2330 2345 3.877508 GGGTCATCTATTTTGGAACGGAG 59.122 47.826 0.00 0.00 0.00 4.63
2331 2346 3.264706 TGGGTCATCTATTTTGGAACGGA 59.735 43.478 0.00 0.00 0.00 4.69
2332 2347 3.616219 TGGGTCATCTATTTTGGAACGG 58.384 45.455 0.00 0.00 0.00 4.44
2333 2348 4.700213 AGTTGGGTCATCTATTTTGGAACG 59.300 41.667 0.00 0.00 0.00 3.95
2334 2349 6.590234 AAGTTGGGTCATCTATTTTGGAAC 57.410 37.500 0.00 0.00 0.00 3.62
2335 2350 8.893563 ATAAAGTTGGGTCATCTATTTTGGAA 57.106 30.769 0.00 0.00 0.00 3.53
2336 2351 9.403583 GTATAAAGTTGGGTCATCTATTTTGGA 57.596 33.333 0.00 0.00 0.00 3.53
2337 2352 9.408648 AGTATAAAGTTGGGTCATCTATTTTGG 57.591 33.333 0.00 0.00 0.00 3.28
2366 2381 9.490083 AGATGACCCAACTTTATAGTACTAACT 57.510 33.333 6.70 0.00 39.91 2.24
2373 2388 9.408648 CCAAAATAGATGACCCAACTTTATAGT 57.591 33.333 0.00 0.00 35.68 2.12
2374 2389 9.627123 TCCAAAATAGATGACCCAACTTTATAG 57.373 33.333 0.00 0.00 0.00 1.31
2375 2390 9.983024 TTCCAAAATAGATGACCCAACTTTATA 57.017 29.630 0.00 0.00 0.00 0.98
2376 2391 8.749354 GTTCCAAAATAGATGACCCAACTTTAT 58.251 33.333 0.00 0.00 0.00 1.40
2377 2392 7.094549 CGTTCCAAAATAGATGACCCAACTTTA 60.095 37.037 0.00 0.00 0.00 1.85
2378 2393 6.294508 CGTTCCAAAATAGATGACCCAACTTT 60.295 38.462 0.00 0.00 0.00 2.66
2379 2394 5.183140 CGTTCCAAAATAGATGACCCAACTT 59.817 40.000 0.00 0.00 0.00 2.66
2380 2395 4.700213 CGTTCCAAAATAGATGACCCAACT 59.300 41.667 0.00 0.00 0.00 3.16
2381 2396 4.142469 CCGTTCCAAAATAGATGACCCAAC 60.142 45.833 0.00 0.00 0.00 3.77
2382 2397 4.013728 CCGTTCCAAAATAGATGACCCAA 58.986 43.478 0.00 0.00 0.00 4.12
2383 2398 3.264706 TCCGTTCCAAAATAGATGACCCA 59.735 43.478 0.00 0.00 0.00 4.51
2384 2399 3.877508 CTCCGTTCCAAAATAGATGACCC 59.122 47.826 0.00 0.00 0.00 4.46
2385 2400 3.877508 CCTCCGTTCCAAAATAGATGACC 59.122 47.826 0.00 0.00 0.00 4.02
2386 2401 3.877508 CCCTCCGTTCCAAAATAGATGAC 59.122 47.826 0.00 0.00 0.00 3.06
2387 2402 3.118038 CCCCTCCGTTCCAAAATAGATGA 60.118 47.826 0.00 0.00 0.00 2.92
2388 2403 3.214328 CCCCTCCGTTCCAAAATAGATG 58.786 50.000 0.00 0.00 0.00 2.90
2389 2404 2.174854 CCCCCTCCGTTCCAAAATAGAT 59.825 50.000 0.00 0.00 0.00 1.98
2390 2405 1.562475 CCCCCTCCGTTCCAAAATAGA 59.438 52.381 0.00 0.00 0.00 1.98
2391 2406 1.283905 ACCCCCTCCGTTCCAAAATAG 59.716 52.381 0.00 0.00 0.00 1.73
2392 2407 1.374572 ACCCCCTCCGTTCCAAAATA 58.625 50.000 0.00 0.00 0.00 1.40
2393 2408 1.374572 TACCCCCTCCGTTCCAAAAT 58.625 50.000 0.00 0.00 0.00 1.82
2394 2409 1.374572 ATACCCCCTCCGTTCCAAAA 58.625 50.000 0.00 0.00 0.00 2.44
2395 2410 1.374572 AATACCCCCTCCGTTCCAAA 58.625 50.000 0.00 0.00 0.00 3.28
2396 2411 1.374572 AAATACCCCCTCCGTTCCAA 58.625 50.000 0.00 0.00 0.00 3.53
2397 2412 2.267160 TAAATACCCCCTCCGTTCCA 57.733 50.000 0.00 0.00 0.00 3.53
2398 2413 2.440627 ACATAAATACCCCCTCCGTTCC 59.559 50.000 0.00 0.00 0.00 3.62
2399 2414 3.851458 ACATAAATACCCCCTCCGTTC 57.149 47.619 0.00 0.00 0.00 3.95
2400 2415 3.524380 TGAACATAAATACCCCCTCCGTT 59.476 43.478 0.00 0.00 0.00 4.44
2401 2416 3.116959 TGAACATAAATACCCCCTCCGT 58.883 45.455 0.00 0.00 0.00 4.69
2402 2417 3.849563 TGAACATAAATACCCCCTCCG 57.150 47.619 0.00 0.00 0.00 4.63
2403 2418 7.783119 ACTTTATTGAACATAAATACCCCCTCC 59.217 37.037 0.00 0.00 0.00 4.30
2404 2419 8.762481 ACTTTATTGAACATAAATACCCCCTC 57.238 34.615 0.00 0.00 0.00 4.30
2405 2420 9.862149 CTACTTTATTGAACATAAATACCCCCT 57.138 33.333 0.00 0.00 0.00 4.79
2406 2421 9.636789 ACTACTTTATTGAACATAAATACCCCC 57.363 33.333 0.00 0.00 0.00 5.40
2544 2726 9.180678 CCAACAACTAAAATACTAAACAGCAAG 57.819 33.333 0.00 0.00 0.00 4.01
2553 2735 9.398538 ACAAACTGACCAACAACTAAAATACTA 57.601 29.630 0.00 0.00 0.00 1.82
2554 2736 8.288689 ACAAACTGACCAACAACTAAAATACT 57.711 30.769 0.00 0.00 0.00 2.12
2615 2797 7.506328 AGCAACTTAAAAATCTTAACGGACT 57.494 32.000 0.00 0.00 0.00 3.85
2616 2798 8.284693 TGTAGCAACTTAAAAATCTTAACGGAC 58.715 33.333 0.00 0.00 0.00 4.79
2617 2799 8.380743 TGTAGCAACTTAAAAATCTTAACGGA 57.619 30.769 0.00 0.00 0.00 4.69
2648 2830 1.953559 TCCAAAGTAGCGATGCCATC 58.046 50.000 0.00 0.00 0.00 3.51
2652 2834 1.202031 CGGTTTCCAAAGTAGCGATGC 60.202 52.381 0.00 0.00 34.99 3.91
2656 2838 2.140717 AGAACGGTTTCCAAAGTAGCG 58.859 47.619 0.00 0.00 38.60 4.26
2740 2922 1.066908 ACAAGGCAACAATGAACACCG 59.933 47.619 0.00 0.00 41.41 4.94
2847 3029 8.576442 CACAATGGACTAGGAAGTTGTAAAAAT 58.424 33.333 0.00 0.00 35.56 1.82
2869 3051 4.707030 CATTCTGAGGCTAAATGCACAA 57.293 40.909 0.00 0.00 45.15 3.33
2959 3144 1.425066 TCAAGGGAGGAGCATGTTGTT 59.575 47.619 0.00 0.00 0.00 2.83
2977 3162 4.811969 TTTAATAGCACGAAGGGACTCA 57.188 40.909 0.00 0.00 38.49 3.41
3002 3187 6.038603 GGCATTCACATTTGCTATTACTCTCA 59.961 38.462 0.00 0.00 38.88 3.27
3028 3213 7.011950 TGGTCCTTACAAATTAATACAGCATCG 59.988 37.037 0.00 0.00 0.00 3.84
3055 3240 2.364002 TCGCCCAGTTCATTGATCGATA 59.636 45.455 0.00 0.00 0.00 2.92
3060 3245 2.172505 TGGTATCGCCCAGTTCATTGAT 59.827 45.455 0.00 0.00 36.04 2.57
3096 3281 6.321181 TCAAAGAATAACTTGTCAGCCAACTT 59.679 34.615 0.00 0.00 38.98 2.66
3106 3291 7.458409 ACATGCTGATCAAAGAATAACTTGT 57.542 32.000 0.00 0.00 38.98 3.16
3165 3350 3.117046 GCCGTAGTGCTGTTTCTATCTC 58.883 50.000 0.00 0.00 0.00 2.75
3181 3366 3.266510 AGAGATTGAATTGCTGCCGTA 57.733 42.857 0.00 0.00 0.00 4.02
3184 3369 3.863142 ACAAGAGATTGAATTGCTGCC 57.137 42.857 0.00 0.00 0.00 4.85
3247 3434 3.842820 CCGGTCTGTATAGCATCATCTG 58.157 50.000 0.00 0.00 0.00 2.90
3267 3454 2.414658 TTAACCACCTTCCCACCGCC 62.415 60.000 0.00 0.00 0.00 6.13
3269 3456 1.271707 ACATTAACCACCTTCCCACCG 60.272 52.381 0.00 0.00 0.00 4.94
3453 3640 7.398618 TGAATTACAGAATTAGGGGCAAATGAA 59.601 33.333 0.00 0.00 35.33 2.57
3493 3680 0.850100 TTGGGATTCACACTGGTGGT 59.150 50.000 5.70 0.00 45.32 4.16
3503 3716 6.289834 TCTTAACGTAACAAGTTGGGATTCA 58.710 36.000 7.96 0.00 33.42 2.57
3509 3722 6.354039 ACAGTTCTTAACGTAACAAGTTGG 57.646 37.500 7.96 0.00 36.23 3.77
3534 3747 7.201530 GGACCGACACAATTACAAGAAATAGAG 60.202 40.741 0.00 0.00 0.00 2.43
3538 3751 5.067273 TGGACCGACACAATTACAAGAAAT 58.933 37.500 0.00 0.00 0.00 2.17
3549 3762 3.767131 TCTCAGAATATGGACCGACACAA 59.233 43.478 0.00 0.00 0.00 3.33
3553 3766 4.520874 TCAGATCTCAGAATATGGACCGAC 59.479 45.833 0.00 0.00 0.00 4.79
3638 3851 3.423571 GCAGATGCATGAGAACGAAAAG 58.576 45.455 2.46 0.00 41.59 2.27
3644 3857 3.795623 AATTGGCAGATGCATGAGAAC 57.204 42.857 2.46 0.00 44.36 3.01
3655 3868 7.882791 TCAGTTCTTCTAATACAAATTGGCAGA 59.117 33.333 0.00 0.00 27.11 4.26
3716 3931 3.438297 AACGTATGACGAATCAGGGAG 57.562 47.619 5.94 0.00 46.05 4.30
3717 3932 3.880047 AAACGTATGACGAATCAGGGA 57.120 42.857 5.94 0.00 46.05 4.20
3733 3948 0.234625 TGCTCTGCGCACTTTAAACG 59.765 50.000 5.66 0.00 45.47 3.60
3749 3964 4.644685 AGCCAAACATTTTATATCGGTGCT 59.355 37.500 0.00 0.00 0.00 4.40
3755 3970 4.746611 GCCTGCAGCCAAACATTTTATATC 59.253 41.667 8.66 0.00 34.35 1.63
3787 4002 1.067142 TGACACCGATAACTGCCAGAC 60.067 52.381 0.00 0.00 0.00 3.51
3803 4018 6.713762 AAGTCCAAATTCAGAACAATGACA 57.286 33.333 0.00 0.00 0.00 3.58
3809 4024 6.377327 GACAGAAAGTCCAAATTCAGAACA 57.623 37.500 0.00 0.00 41.56 3.18
3892 4135 3.876274 TCGTCTCCTCATTTCTCCAAG 57.124 47.619 0.00 0.00 0.00 3.61
3937 4180 2.259818 CCTGAGCGCTTCGTCACT 59.740 61.111 13.26 0.00 0.00 3.41
3939 4182 2.258591 GACCTGAGCGCTTCGTCA 59.741 61.111 13.26 3.70 0.00 4.35
3952 4195 1.680651 CTCGCTCTGGTGAGGACCT 60.681 63.158 0.00 0.00 43.95 3.85
3975 4218 1.213678 CCTGGAGGAAGATGAATGCCA 59.786 52.381 0.00 0.00 37.39 4.92
4106 4352 2.094894 CCATGAGTTGTGTCAATCGAGC 59.905 50.000 0.00 0.00 0.00 5.03
4147 4393 4.840271 TCATCACAGTGCATCAGATTCTT 58.160 39.130 0.00 0.00 0.00 2.52
4203 4449 2.143122 GCTCTTTCGGACAACATGACA 58.857 47.619 0.00 0.00 0.00 3.58
4284 4531 3.009916 ACCATCCTGTGCTTCTCAATTCT 59.990 43.478 0.00 0.00 0.00 2.40
4298 4545 0.687757 TTCTCCCTCCGACCATCCTG 60.688 60.000 0.00 0.00 0.00 3.86
4299 4546 0.397816 CTTCTCCCTCCGACCATCCT 60.398 60.000 0.00 0.00 0.00 3.24
4307 4554 1.067821 GCATCTGTACTTCTCCCTCCG 59.932 57.143 0.00 0.00 0.00 4.63
4319 4567 5.009911 GTCCATGCCATAAAATGCATCTGTA 59.990 40.000 0.00 0.00 45.98 2.74
4323 4571 4.280174 AGAGTCCATGCCATAAAATGCATC 59.720 41.667 0.00 0.00 45.98 3.91
4361 4609 9.357652 CATGTGAATTTCAGTACCCTTATTTTG 57.642 33.333 0.00 0.00 0.00 2.44
4611 4859 2.021723 GCACTGGGTTGGTTGACTTGA 61.022 52.381 0.00 0.00 0.00 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.