Multiple sequence alignment - TraesCS5A01G233000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G233000 chr5A 100.000 5443 0 0 1 5443 448290318 448295760 0.000000e+00 10052.0
1 TraesCS5A01G233000 chr5A 81.552 786 140 3 1110 1894 368132959 368132178 1.280000e-180 643.0
2 TraesCS5A01G233000 chr5A 77.381 336 61 11 2727 3056 585399795 585399469 9.310000e-43 185.0
3 TraesCS5A01G233000 chr5A 97.619 42 1 0 5354 5395 378710753 378710712 7.560000e-09 73.1
4 TraesCS5A01G233000 chr5D 91.651 2180 136 34 54 2223 348160245 348162388 0.000000e+00 2976.0
5 TraesCS5A01G233000 chr5D 87.872 2152 141 45 2511 4595 348162390 348164488 0.000000e+00 2418.0
6 TraesCS5A01G233000 chr5D 86.848 882 71 23 4557 5420 348164489 348165343 0.000000e+00 944.0
7 TraesCS5A01G233000 chr5D 82.481 782 134 1 1117 1898 281684235 281683457 0.000000e+00 682.0
8 TraesCS5A01G233000 chr5D 80.934 792 146 3 1110 1900 281526905 281526118 5.990000e-174 621.0
9 TraesCS5A01G233000 chr5D 76.159 302 61 10 2701 2995 547998763 547999060 1.220000e-31 148.0
10 TraesCS5A01G233000 chr5D 76.887 212 29 12 2870 3074 546692728 546692530 9.650000e-18 102.0
11 TraesCS5A01G233000 chr5D 77.358 159 30 5 2898 3055 464993345 464993192 7.510000e-14 89.8
12 TraesCS5A01G233000 chr5B 91.273 1971 130 23 267 2223 408344216 408346158 0.000000e+00 2649.0
13 TraesCS5A01G233000 chr5B 95.782 806 34 0 3790 4595 408347870 408348675 0.000000e+00 1301.0
14 TraesCS5A01G233000 chr5B 86.140 873 60 18 3008 3846 408347027 408347872 0.000000e+00 885.0
15 TraesCS5A01G233000 chr5B 84.041 871 88 29 4557 5420 408348676 408349502 0.000000e+00 791.0
16 TraesCS5A01G233000 chr5B 82.293 785 132 5 1117 1899 319651142 319650363 0.000000e+00 673.0
17 TraesCS5A01G233000 chr5B 88.136 177 16 3 54 227 408344041 408344215 7.150000e-49 206.0
18 TraesCS5A01G233000 chr5B 91.765 85 6 1 2511 2594 408346160 408346244 3.440000e-22 117.0
19 TraesCS5A01G233000 chr5B 94.737 57 0 3 2028 2082 216615618 216615673 9.710000e-13 86.1
20 TraesCS5A01G233000 chr5B 97.500 40 1 0 2433 2472 408346119 408346158 9.780000e-08 69.4
21 TraesCS5A01G233000 chr1D 92.045 176 12 2 427 601 155786128 155785954 4.210000e-61 246.0
22 TraesCS5A01G233000 chr2B 78.814 354 57 12 2711 3054 514346156 514346501 7.100000e-54 222.0
23 TraesCS5A01G233000 chr2B 84.034 119 14 5 2694 2809 545771302 545771186 5.760000e-20 110.0
24 TraesCS5A01G233000 chr2B 94.737 57 1 2 2028 2082 400368481 400368425 2.700000e-13 87.9
25 TraesCS5A01G233000 chr2B 91.935 62 1 4 2023 2082 627321271 627321330 3.490000e-12 84.2
26 TraesCS5A01G233000 chr4A 75.248 303 63 11 2701 2995 618622827 618623125 3.420000e-27 134.0
27 TraesCS5A01G233000 chr4A 91.489 47 2 2 3011 3057 137167457 137167501 4.550000e-06 63.9
28 TraesCS5A01G233000 chr6D 80.723 166 32 0 4665 4830 461351780 461351945 4.420000e-26 130.0
29 TraesCS5A01G233000 chr7D 83.898 118 18 1 4668 4785 618111936 618112052 1.600000e-20 111.0
30 TraesCS5A01G233000 chr7D 92.857 56 4 0 2027 2082 182341665 182341610 1.260000e-11 82.4
31 TraesCS5A01G233000 chr7A 91.176 68 6 0 5333 5400 646754641 646754708 5.810000e-15 93.5
32 TraesCS5A01G233000 chr4B 83.838 99 14 2 4745 4842 324427934 324428031 5.810000e-15 93.5
33 TraesCS5A01G233000 chr4B 84.524 84 10 3 4732 4813 166578636 166578718 4.520000e-11 80.5
34 TraesCS5A01G233000 chr4B 91.837 49 2 2 3011 3059 413872621 413872575 3.520000e-07 67.6
35 TraesCS5A01G233000 chr3B 73.793 290 51 15 2776 3056 819011061 819010788 2.090000e-14 91.6
36 TraesCS5A01G233000 chr3B 75.234 214 36 13 5182 5392 775634431 775634630 9.710000e-13 86.1
37 TraesCS5A01G233000 chr3D 79.104 134 24 2 4667 4800 443263375 443263504 7.510000e-14 89.8
38 TraesCS5A01G233000 chr3D 94.643 56 1 2 2027 2081 591171107 591171161 9.710000e-13 86.1
39 TraesCS5A01G233000 chr3D 94.444 36 0 2 4852 4886 596973600 596973634 3.000000e-03 54.7
40 TraesCS5A01G233000 chr3A 73.038 293 61 18 2701 2983 671285580 671285296 2.700000e-13 87.9
41 TraesCS5A01G233000 chr3A 87.500 56 7 0 4724 4779 729892845 729892900 1.270000e-06 65.8
42 TraesCS5A01G233000 chr6B 94.737 57 0 3 2028 2082 663237326 663237271 9.710000e-13 86.1
43 TraesCS5A01G233000 chr6B 84.146 82 5 2 2977 3055 18723443 18723367 7.560000e-09 73.1
44 TraesCS5A01G233000 chr2A 91.803 61 1 4 2024 2082 678139248 678139190 1.260000e-11 82.4
45 TraesCS5A01G233000 chr1B 90.476 63 4 1 2022 2082 276325738 276325676 1.260000e-11 82.4
46 TraesCS5A01G233000 chr1A 90.476 63 5 1 4732 4794 86615912 86615851 1.260000e-11 82.4
47 TraesCS5A01G233000 chr1A 91.803 61 2 3 2024 2082 353653889 353653830 1.260000e-11 82.4
48 TraesCS5A01G233000 chr4D 93.182 44 3 0 3011 3054 335894936 335894893 1.270000e-06 65.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G233000 chr5A 448290318 448295760 5442 False 10052.000000 10052 100.000000 1 5443 1 chr5A.!!$F1 5442
1 TraesCS5A01G233000 chr5A 368132178 368132959 781 True 643.000000 643 81.552000 1110 1894 1 chr5A.!!$R1 784
2 TraesCS5A01G233000 chr5D 348160245 348165343 5098 False 2112.666667 2976 88.790333 54 5420 3 chr5D.!!$F2 5366
3 TraesCS5A01G233000 chr5D 281683457 281684235 778 True 682.000000 682 82.481000 1117 1898 1 chr5D.!!$R2 781
4 TraesCS5A01G233000 chr5D 281526118 281526905 787 True 621.000000 621 80.934000 1110 1900 1 chr5D.!!$R1 790
5 TraesCS5A01G233000 chr5B 408344041 408349502 5461 False 859.771429 2649 90.662429 54 5420 7 chr5B.!!$F2 5366
6 TraesCS5A01G233000 chr5B 319650363 319651142 779 True 673.000000 673 82.293000 1117 1899 1 chr5B.!!$R1 782

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
171 172 0.306533 TTGCTTCGCGTTCAAGTTCC 59.693 50.000 5.77 0.0 0.00 3.62 F
529 534 0.391661 AGCCACTCCAGCATTACACG 60.392 55.000 0.00 0.0 0.00 4.49 F
660 665 1.000717 GTTTTGCGCAGGTAACATGGT 60.001 47.619 11.31 0.0 41.41 3.55 F
1953 1960 1.000163 CCGTGTATGCTGGTAGCCTAG 60.000 57.143 0.00 0.0 41.51 3.02 F
3158 3686 0.981183 TTACACGTTGCTCCCCTCAT 59.019 50.000 0.00 0.0 0.00 2.90 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1144 1150 0.321653 AGGTGGAAGATGTTGCCGAC 60.322 55.0 0.00 0.0 0.00 4.79 R
1470 1476 0.617249 CCAGCTCCCTCACCTTCTCT 60.617 60.0 0.00 0.0 0.00 3.10 R
2632 2807 1.061546 TCCTCCAAAACGCCCTACTT 58.938 50.0 0.00 0.0 0.00 2.24 R
3192 3720 0.179100 ACCTTGATCGATCACTGCCG 60.179 55.0 27.28 14.5 36.36 5.69 R
4497 5092 0.536724 TAGCCGCAGTGATCATGTGT 59.463 50.0 0.00 0.0 0.00 3.72 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 5.043248 CCGATCTAAATGGACAAAAATGCC 58.957 41.667 0.00 0.00 0.00 4.40
24 25 4.734854 CGATCTAAATGGACAAAAATGCCG 59.265 41.667 0.00 0.00 0.00 5.69
25 26 5.650543 GATCTAAATGGACAAAAATGCCGT 58.349 37.500 0.00 0.00 0.00 5.68
26 27 5.054390 TCTAAATGGACAAAAATGCCGTC 57.946 39.130 0.00 0.00 0.00 4.79
28 29 4.859784 GGACAAAAATGCCGTCCG 57.140 55.556 0.00 0.00 39.86 4.79
29 30 1.953772 GGACAAAAATGCCGTCCGT 59.046 52.632 0.00 0.00 39.86 4.69
30 31 0.312729 GGACAAAAATGCCGTCCGTT 59.687 50.000 0.00 0.00 39.86 4.44
31 32 1.269361 GGACAAAAATGCCGTCCGTTT 60.269 47.619 0.00 0.00 39.86 3.60
32 33 1.784283 GACAAAAATGCCGTCCGTTTG 59.216 47.619 0.00 0.00 33.08 2.93
33 34 1.405821 ACAAAAATGCCGTCCGTTTGA 59.594 42.857 6.69 0.00 33.08 2.69
34 35 2.050691 CAAAAATGCCGTCCGTTTGAG 58.949 47.619 0.00 0.00 33.08 3.02
35 36 1.314730 AAAATGCCGTCCGTTTGAGT 58.685 45.000 0.00 0.00 33.08 3.41
36 37 0.872388 AAATGCCGTCCGTTTGAGTC 59.128 50.000 0.00 0.00 31.58 3.36
37 38 1.289109 AATGCCGTCCGTTTGAGTCG 61.289 55.000 0.00 0.00 0.00 4.18
39 40 3.110178 CCGTCCGTTTGAGTCGGC 61.110 66.667 0.00 0.00 46.49 5.54
40 41 3.110178 CGTCCGTTTGAGTCGGCC 61.110 66.667 0.00 0.00 46.49 6.13
41 42 2.741211 GTCCGTTTGAGTCGGCCC 60.741 66.667 0.00 0.00 46.49 5.80
42 43 3.235481 TCCGTTTGAGTCGGCCCA 61.235 61.111 0.00 0.00 46.49 5.36
43 44 2.046314 CCGTTTGAGTCGGCCCAT 60.046 61.111 0.00 0.00 41.48 4.00
44 45 1.674322 CCGTTTGAGTCGGCCCATT 60.674 57.895 0.00 0.00 41.48 3.16
45 46 1.501741 CGTTTGAGTCGGCCCATTG 59.498 57.895 0.00 0.00 0.00 2.82
46 47 0.953471 CGTTTGAGTCGGCCCATTGA 60.953 55.000 0.00 0.00 0.00 2.57
47 48 1.243902 GTTTGAGTCGGCCCATTGAA 58.756 50.000 0.00 0.00 0.00 2.69
48 49 1.068541 GTTTGAGTCGGCCCATTGAAC 60.069 52.381 0.00 0.00 0.00 3.18
49 50 0.400213 TTGAGTCGGCCCATTGAACT 59.600 50.000 0.00 0.00 0.00 3.01
50 51 0.400213 TGAGTCGGCCCATTGAACTT 59.600 50.000 0.00 0.00 0.00 2.66
51 52 0.804989 GAGTCGGCCCATTGAACTTG 59.195 55.000 0.00 0.00 0.00 3.16
52 53 1.212751 GTCGGCCCATTGAACTTGC 59.787 57.895 0.00 0.00 0.00 4.01
147 148 3.314693 TGGTTTTACTGTCACTCTCCCT 58.685 45.455 0.00 0.00 0.00 4.20
163 164 1.375523 CCTACCCTTGCTTCGCGTT 60.376 57.895 5.77 0.00 0.00 4.84
169 170 0.307760 CCTTGCTTCGCGTTCAAGTT 59.692 50.000 24.18 0.00 36.41 2.66
171 172 0.306533 TTGCTTCGCGTTCAAGTTCC 59.693 50.000 5.77 0.00 0.00 3.62
172 173 0.812014 TGCTTCGCGTTCAAGTTCCA 60.812 50.000 5.77 0.00 0.00 3.53
190 191 0.944311 CACACACACAGCCCGAGTAC 60.944 60.000 0.00 0.00 0.00 2.73
201 202 1.551883 GCCCGAGTACTTTTACCCTCA 59.448 52.381 0.00 0.00 0.00 3.86
204 205 2.564062 CCGAGTACTTTTACCCTCACCA 59.436 50.000 0.00 0.00 0.00 4.17
207 211 4.617762 CGAGTACTTTTACCCTCACCAGAC 60.618 50.000 0.00 0.00 0.00 3.51
213 217 0.402887 TACCCTCACCAGACGAGTCA 59.597 55.000 5.99 0.00 0.00 3.41
214 218 0.896019 ACCCTCACCAGACGAGTCAG 60.896 60.000 5.99 0.00 0.00 3.51
215 219 0.609406 CCCTCACCAGACGAGTCAGA 60.609 60.000 5.99 0.00 0.00 3.27
216 220 0.808125 CCTCACCAGACGAGTCAGAG 59.192 60.000 5.99 6.94 0.00 3.35
217 221 1.611936 CCTCACCAGACGAGTCAGAGA 60.612 57.143 5.99 0.63 0.00 3.10
218 222 2.155279 CTCACCAGACGAGTCAGAGAA 58.845 52.381 5.99 0.00 0.00 2.87
219 223 2.554462 CTCACCAGACGAGTCAGAGAAA 59.446 50.000 5.99 0.00 0.00 2.52
220 224 2.554462 TCACCAGACGAGTCAGAGAAAG 59.446 50.000 5.99 0.00 0.00 2.62
235 239 5.044919 TCAGAGAAAGAGAGAGAGAGGATGT 60.045 44.000 0.00 0.00 0.00 3.06
245 249 1.342819 AGAGAGGATGTGCTATTCGCC 59.657 52.381 0.00 0.00 38.05 5.54
314 318 4.980805 TGGCAAGGCGACACGTCC 62.981 66.667 0.00 0.00 28.67 4.79
387 391 3.458388 GCGAGAGTGGTAGCGATAC 57.542 57.895 1.22 1.22 0.00 2.24
400 404 6.464834 GTGGTAGCGATACGATTTTTCAAAAG 59.535 38.462 4.52 0.00 0.00 2.27
401 405 6.369340 TGGTAGCGATACGATTTTTCAAAAGA 59.631 34.615 4.52 0.00 0.00 2.52
403 407 7.425595 GGTAGCGATACGATTTTTCAAAAGAAG 59.574 37.037 4.52 0.00 0.00 2.85
411 415 8.527567 ACGATTTTTCAAAAGAAGAAAACACA 57.472 26.923 0.00 0.00 42.68 3.72
442 446 2.116736 CTCGCGCAAAACTTGGAGCA 62.117 55.000 8.75 0.00 0.00 4.26
451 456 2.206576 AACTTGGAGCAATCCACCTC 57.793 50.000 0.00 0.00 39.90 3.85
485 490 1.714460 GAGCTCGTATTGTATTCGCCG 59.286 52.381 0.00 0.00 0.00 6.46
515 520 3.626924 ACACCAGACGGGAGCCAC 61.627 66.667 0.00 0.00 41.15 5.01
529 534 0.391661 AGCCACTCCAGCATTACACG 60.392 55.000 0.00 0.00 0.00 4.49
547 552 4.752879 ACCCGTCCAATCACGCCG 62.753 66.667 0.00 0.00 38.52 6.46
618 623 1.135575 CCATCAAAAAGTCAGAGCCGC 60.136 52.381 0.00 0.00 0.00 6.53
620 625 1.441016 CAAAAAGTCAGAGCCGCGC 60.441 57.895 0.00 0.00 0.00 6.86
641 646 3.867216 GCCCGTAATCAAACACTAGTGGT 60.867 47.826 26.12 18.46 34.19 4.16
647 652 3.684103 TCAAACACTAGTGGTTTTGCG 57.316 42.857 23.58 12.44 38.67 4.85
660 665 1.000717 GTTTTGCGCAGGTAACATGGT 60.001 47.619 11.31 0.00 41.41 3.55
809 814 5.347342 TGGCAAACTTAAATGTGTGTTGAG 58.653 37.500 0.00 0.00 0.00 3.02
856 862 5.047306 TGACGTCCAAGATTAGTGATTCTGT 60.047 40.000 14.12 0.00 0.00 3.41
893 899 7.749570 GTGTATATGTACTGGTTAGTCTATGCG 59.250 40.741 1.08 0.00 38.36 4.73
991 997 3.452627 AGCATCCTAACTCCCTAAGTGTG 59.547 47.826 0.00 0.00 38.58 3.82
1044 1050 3.203412 CTCTACGTCTCGGCCGCT 61.203 66.667 23.51 2.06 0.00 5.52
1062 1068 1.996191 GCTTCTTGCGTCCTCTACAAG 59.004 52.381 0.00 0.00 41.70 3.16
1069 1075 1.135053 GCGTCCTCTACAAGGTCTTCC 60.135 57.143 0.00 0.00 46.32 3.46
1144 1150 2.461110 CCGACGCCAATCCCTTTCG 61.461 63.158 0.00 0.00 0.00 3.46
1612 1618 4.819761 TGGCCGACATGAGCTCGC 62.820 66.667 9.64 4.80 0.00 5.03
1937 1944 2.299521 AGGAGTACTTAGCTAGCCGTG 58.700 52.381 12.13 3.93 0.00 4.94
1948 1955 1.603172 GCTAGCCGTGTATGCTGGTAG 60.603 57.143 2.29 0.00 39.29 3.18
1951 1958 1.823295 CCGTGTATGCTGGTAGCCT 59.177 57.895 0.00 0.00 41.51 4.58
1952 1959 1.037493 CCGTGTATGCTGGTAGCCTA 58.963 55.000 0.00 0.00 41.51 3.93
1953 1960 1.000163 CCGTGTATGCTGGTAGCCTAG 60.000 57.143 0.00 0.00 41.51 3.02
1960 1967 2.569059 TGCTGGTAGCCTAGTAGTACG 58.431 52.381 0.00 0.00 41.51 3.67
1992 2000 2.982470 GTGTCCGTACAAAAGTACTCCG 59.018 50.000 0.00 0.00 37.36 4.63
2008 2016 3.963129 ACTCCGCAATCCAAAGGATAAA 58.037 40.909 0.00 0.00 42.27 1.40
2026 2034 6.039829 AGGATAAAATCTTCTCGGGCAATTTC 59.960 38.462 0.00 0.00 0.00 2.17
2027 2035 6.039829 GGATAAAATCTTCTCGGGCAATTTCT 59.960 38.462 0.00 0.00 0.00 2.52
2028 2036 5.728637 AAAATCTTCTCGGGCAATTTCTT 57.271 34.783 0.00 0.00 0.00 2.52
2029 2037 5.728637 AAATCTTCTCGGGCAATTTCTTT 57.271 34.783 0.00 0.00 0.00 2.52
2030 2038 5.728637 AATCTTCTCGGGCAATTTCTTTT 57.271 34.783 0.00 0.00 0.00 2.27
2053 2061 6.864360 TTTTGAATGGAGGCAAAAGATTTG 57.136 33.333 0.00 0.00 38.60 2.32
2067 2075 8.931385 GCAAAAGATTTGCCTCATCTATTAAA 57.069 30.769 15.12 0.00 39.38 1.52
2076 2084 9.784531 TTTGCCTCATCTATTAAATAAGAGAGG 57.215 33.333 16.57 16.57 37.02 3.69
2078 2086 9.159254 TGCCTCATCTATTAAATAAGAGAGGAA 57.841 33.333 20.53 14.37 41.70 3.36
2102 2110 5.978934 AGCAAAAGAAAAATCAGTTGCAG 57.021 34.783 14.69 0.00 42.90 4.41
2108 2116 6.959639 AAGAAAAATCAGTTGCAGAAGGTA 57.040 33.333 0.00 0.00 0.00 3.08
2120 2128 3.326588 TGCAGAAGGTAAAACTAGAGGCA 59.673 43.478 0.00 0.00 0.00 4.75
2171 2182 7.318141 ACAATGTGCTATTTGAGGATCTTTTG 58.682 34.615 0.00 0.00 34.92 2.44
2177 2188 8.411683 GTGCTATTTGAGGATCTTTTGATTGAT 58.588 33.333 0.00 0.00 39.67 2.57
2178 2189 8.974238 TGCTATTTGAGGATCTTTTGATTGATT 58.026 29.630 0.00 0.00 39.67 2.57
2184 2195 7.965718 TGAGGATCTTTTGATTGATTTTGGTT 58.034 30.769 0.00 0.00 39.67 3.67
2185 2196 8.431222 TGAGGATCTTTTGATTGATTTTGGTTT 58.569 29.630 0.00 0.00 39.67 3.27
2186 2197 9.276590 GAGGATCTTTTGATTGATTTTGGTTTT 57.723 29.630 0.00 0.00 39.67 2.43
2187 2198 9.059260 AGGATCTTTTGATTGATTTTGGTTTTG 57.941 29.630 0.00 0.00 39.67 2.44
2188 2199 8.839343 GGATCTTTTGATTGATTTTGGTTTTGT 58.161 29.630 0.00 0.00 39.67 2.83
2195 2206 9.447157 TTGATTGATTTTGGTTTTGTTTCTTCT 57.553 25.926 0.00 0.00 0.00 2.85
2199 2210 9.883142 TTGATTTTGGTTTTGTTTCTTCTATGT 57.117 25.926 0.00 0.00 0.00 2.29
2206 2217 9.567776 TGGTTTTGTTTCTTCTATGTAATCTGA 57.432 29.630 0.00 0.00 0.00 3.27
2210 2221 8.791327 TTGTTTCTTCTATGTAATCTGATGCA 57.209 30.769 0.00 0.00 0.00 3.96
2211 2222 8.201554 TGTTTCTTCTATGTAATCTGATGCAC 57.798 34.615 0.00 0.00 0.00 4.57
2212 2223 8.043113 TGTTTCTTCTATGTAATCTGATGCACT 58.957 33.333 0.00 0.00 0.00 4.40
2213 2224 9.534565 GTTTCTTCTATGTAATCTGATGCACTA 57.465 33.333 0.00 0.00 0.00 2.74
2215 2226 9.702494 TTCTTCTATGTAATCTGATGCACTATG 57.298 33.333 0.00 0.00 0.00 2.23
2216 2227 8.864087 TCTTCTATGTAATCTGATGCACTATGT 58.136 33.333 0.00 0.00 0.00 2.29
2219 2230 8.743714 TCTATGTAATCTGATGCACTATGTAGG 58.256 37.037 0.00 0.00 0.00 3.18
2220 2231 6.731292 TGTAATCTGATGCACTATGTAGGT 57.269 37.500 0.00 0.00 0.00 3.08
2221 2232 7.833285 TGTAATCTGATGCACTATGTAGGTA 57.167 36.000 0.00 0.00 0.00 3.08
2222 2233 8.422577 TGTAATCTGATGCACTATGTAGGTAT 57.577 34.615 0.00 0.00 0.00 2.73
2223 2234 8.870116 TGTAATCTGATGCACTATGTAGGTATT 58.130 33.333 0.00 0.00 0.00 1.89
2224 2235 9.360093 GTAATCTGATGCACTATGTAGGTATTC 57.640 37.037 0.00 0.00 0.00 1.75
2225 2236 6.976934 TCTGATGCACTATGTAGGTATTCA 57.023 37.500 0.00 0.00 0.00 2.57
2226 2237 7.360113 TCTGATGCACTATGTAGGTATTCAA 57.640 36.000 0.00 0.00 0.00 2.69
2227 2238 7.966812 TCTGATGCACTATGTAGGTATTCAAT 58.033 34.615 0.00 0.00 0.00 2.57
2228 2239 8.432013 TCTGATGCACTATGTAGGTATTCAATT 58.568 33.333 0.00 0.00 0.00 2.32
2229 2240 9.710900 CTGATGCACTATGTAGGTATTCAATTA 57.289 33.333 0.00 0.00 0.00 1.40
2264 2275 8.951954 TTGCAAATATGAATTTCAAAATGTGC 57.048 26.923 21.90 21.90 37.47 4.57
2265 2276 8.095937 TGCAAATATGAATTTCAAAATGTGCA 57.904 26.923 24.84 24.84 41.10 4.57
2266 2277 8.565416 TGCAAATATGAATTTCAAAATGTGCAA 58.435 25.926 25.66 16.34 40.76 4.08
2267 2278 9.562583 GCAAATATGAATTTCAAAATGTGCAAT 57.437 25.926 22.87 2.68 37.18 3.56
2327 2338 9.246670 TGATTTAGATGGAAATGAGAACATTGT 57.753 29.630 0.00 0.00 44.67 2.71
2328 2339 9.727627 GATTTAGATGGAAATGAGAACATTGTC 57.272 33.333 0.00 0.00 44.67 3.18
2329 2340 8.634335 TTTAGATGGAAATGAGAACATTGTCA 57.366 30.769 0.00 0.00 44.67 3.58
2330 2341 8.812513 TTAGATGGAAATGAGAACATTGTCAT 57.187 30.769 0.00 0.00 44.67 3.06
2331 2342 9.904198 TTAGATGGAAATGAGAACATTGTCATA 57.096 29.630 4.82 0.00 44.67 2.15
2332 2343 8.447924 AGATGGAAATGAGAACATTGTCATAG 57.552 34.615 4.82 0.00 44.67 2.23
2333 2344 8.270030 AGATGGAAATGAGAACATTGTCATAGA 58.730 33.333 4.82 0.00 44.67 1.98
2334 2345 8.812513 ATGGAAATGAGAACATTGTCATAGAA 57.187 30.769 4.82 0.00 44.67 2.10
2335 2346 8.634335 TGGAAATGAGAACATTGTCATAGAAA 57.366 30.769 4.82 0.00 44.67 2.52
2336 2347 8.514594 TGGAAATGAGAACATTGTCATAGAAAC 58.485 33.333 4.82 0.00 44.67 2.78
2337 2348 8.734386 GGAAATGAGAACATTGTCATAGAAACT 58.266 33.333 4.82 0.00 44.67 2.66
2342 2353 9.725019 TGAGAACATTGTCATAGAAACTTATGT 57.275 29.630 0.00 0.00 33.66 2.29
2344 2355 9.725019 AGAACATTGTCATAGAAACTTATGTCA 57.275 29.630 0.00 0.00 33.66 3.58
2347 2358 9.896645 ACATTGTCATAGAAACTTATGTCATCT 57.103 29.630 0.00 3.53 32.10 2.90
2351 2362 9.538508 TGTCATAGAAACTTATGTCATCTGATG 57.461 33.333 11.42 11.42 33.66 3.07
2352 2363 9.539825 GTCATAGAAACTTATGTCATCTGATGT 57.460 33.333 16.66 1.31 33.66 3.06
2367 2378 5.866159 TCTGATGTAATCTGATGCACTCT 57.134 39.130 0.00 0.00 44.84 3.24
2368 2379 6.966534 TCTGATGTAATCTGATGCACTCTA 57.033 37.500 0.00 0.00 44.84 2.43
2369 2380 7.536159 TCTGATGTAATCTGATGCACTCTAT 57.464 36.000 0.00 0.00 44.84 1.98
2370 2381 8.641498 TCTGATGTAATCTGATGCACTCTATA 57.359 34.615 0.00 0.00 44.84 1.31
2371 2382 9.082313 TCTGATGTAATCTGATGCACTCTATAA 57.918 33.333 0.00 0.00 44.84 0.98
2372 2383 9.872721 CTGATGTAATCTGATGCACTCTATAAT 57.127 33.333 0.00 0.00 45.81 1.28
2376 2387 9.481340 TGTAATCTGATGCACTCTATAATTCAC 57.519 33.333 0.00 0.00 0.00 3.18
2377 2388 9.481340 GTAATCTGATGCACTCTATAATTCACA 57.519 33.333 0.00 0.00 0.00 3.58
2418 2429 9.965902 ATTGAATTAAAGTGGAGACTTCTACAT 57.034 29.630 0.00 0.00 41.87 2.29
2425 2436 8.779354 AAAGTGGAGACTTCTACATATTTCAC 57.221 34.615 0.00 0.00 41.87 3.18
2426 2437 7.482169 AGTGGAGACTTCTACATATTTCACA 57.518 36.000 0.00 0.00 39.36 3.58
2427 2438 8.083828 AGTGGAGACTTCTACATATTTCACAT 57.916 34.615 0.00 0.00 39.36 3.21
2428 2439 9.201989 AGTGGAGACTTCTACATATTTCACATA 57.798 33.333 0.00 0.00 39.36 2.29
2429 2440 9.988815 GTGGAGACTTCTACATATTTCACATAT 57.011 33.333 0.00 0.00 39.36 1.78
2430 2441 9.987272 TGGAGACTTCTACATATTTCACATATG 57.013 33.333 0.00 0.00 37.84 1.78
2464 2475 4.864633 TCGATGTAATCTGATGCACTCTC 58.135 43.478 0.00 0.00 42.58 3.20
2472 2483 9.306777 TGTAATCTGATGCACTCTCTAGATATT 57.693 33.333 0.00 0.00 0.00 1.28
2473 2484 9.787532 GTAATCTGATGCACTCTCTAGATATTC 57.212 37.037 0.00 0.00 0.00 1.75
2474 2485 8.419922 AATCTGATGCACTCTCTAGATATTCA 57.580 34.615 0.00 0.00 0.00 2.57
2475 2486 7.830099 TCTGATGCACTCTCTAGATATTCAA 57.170 36.000 0.00 0.00 0.00 2.69
2476 2487 8.419922 TCTGATGCACTCTCTAGATATTCAAT 57.580 34.615 0.00 0.00 0.00 2.57
2477 2488 9.525826 TCTGATGCACTCTCTAGATATTCAATA 57.474 33.333 0.00 0.00 0.00 1.90
2525 2536 8.984482 TTTTGAAAATGTGCAATTATCAAACG 57.016 26.923 12.62 0.00 35.68 3.60
2536 2547 6.585702 TGCAATTATCAAACGTCTCCATTTTG 59.414 34.615 0.00 0.00 0.00 2.44
2576 2587 9.473007 TGGTTTAGATGGAAATGATAACATTGA 57.527 29.630 0.00 0.00 44.67 2.57
2625 2800 9.949377 GTAGCTTTTAGTTAACAATTCGAGTAC 57.051 33.333 8.61 0.00 0.00 2.73
2626 2801 7.727017 AGCTTTTAGTTAACAATTCGAGTACG 58.273 34.615 8.61 0.00 41.26 3.67
2627 2802 7.383300 AGCTTTTAGTTAACAATTCGAGTACGT 59.617 33.333 8.61 0.00 40.69 3.57
2628 2803 8.638565 GCTTTTAGTTAACAATTCGAGTACGTA 58.361 33.333 8.61 0.00 40.69 3.57
2657 2835 1.959226 GCGTTTTGGAGGACGAGCA 60.959 57.895 0.00 0.00 41.53 4.26
2672 2850 3.566130 AGCACCATGGAGCTCTTTC 57.434 52.632 28.64 2.59 37.49 2.62
2680 2858 4.522022 ACCATGGAGCTCTTTCTTTTGAAG 59.478 41.667 21.47 0.00 39.88 3.02
2681 2859 4.763793 CCATGGAGCTCTTTCTTTTGAAGA 59.236 41.667 14.64 0.00 39.88 2.87
2709 2892 3.562182 ACCGGAATCACCTTGAAGTTTT 58.438 40.909 9.46 0.00 36.31 2.43
2714 2897 6.640907 CCGGAATCACCTTGAAGTTTTAAAAG 59.359 38.462 0.00 0.00 36.31 2.27
2742 2925 6.919115 TCTGAAAACAATCACACACATTCATG 59.081 34.615 0.00 0.00 0.00 3.07
2743 2926 6.571605 TGAAAACAATCACACACATTCATGT 58.428 32.000 0.00 0.00 42.84 3.21
2744 2927 7.040494 TGAAAACAATCACACACATTCATGTT 58.960 30.769 0.00 0.00 39.39 2.71
2750 2933 5.771153 TCACACACATTCATGTTGATGTT 57.229 34.783 8.63 1.55 39.39 2.71
2845 3054 6.237648 GCATTTTAATAGTGAACAGTGCATGC 60.238 38.462 11.82 11.82 0.00 4.06
2945 3454 6.315091 ACACTCACATAGTATACATCCGTC 57.685 41.667 5.50 0.00 35.76 4.79
2967 3476 4.569162 TCTGAACGAACGTGATTGTTTTCT 59.431 37.500 0.00 0.00 30.75 2.52
2970 3479 5.007234 TGAACGAACGTGATTGTTTTCTGAT 59.993 36.000 0.00 0.00 30.75 2.90
2971 3480 5.418310 ACGAACGTGATTGTTTTCTGATT 57.582 34.783 0.00 0.00 30.75 2.57
2977 3486 8.702163 AACGTGATTGTTTTCTGATTTTTCTT 57.298 26.923 0.00 0.00 0.00 2.52
2978 3487 8.118893 ACGTGATTGTTTTCTGATTTTTCTTG 57.881 30.769 0.00 0.00 0.00 3.02
3057 3566 4.662145 GTCCTCCATTTAGCATTTTCGTG 58.338 43.478 0.00 0.00 0.00 4.35
3079 3588 7.713073 TCGTGCATCTACAAAATATAATGGTGA 59.287 33.333 0.00 0.00 0.00 4.02
3101 3629 9.520204 GGTGAAAAATGTGTATCAAAGATATGG 57.480 33.333 0.00 0.00 0.00 2.74
3105 3633 5.589367 ATGTGTATCAAAGATATGGGGCT 57.411 39.130 0.00 0.00 0.00 5.19
3148 3676 2.322081 CCGGTGCCCTTACACGTTG 61.322 63.158 0.00 0.00 41.65 4.10
3158 3686 0.981183 TTACACGTTGCTCCCCTCAT 59.019 50.000 0.00 0.00 0.00 2.90
3161 3689 2.224159 ACGTTGCTCCCCTCATGGT 61.224 57.895 0.00 0.00 0.00 3.55
3166 3694 3.080641 CTCCCCTCATGGTGCACA 58.919 61.111 20.43 5.24 0.00 4.57
3175 3703 3.813724 CCTCATGGTGCACATCTTATCTG 59.186 47.826 20.43 3.80 37.84 2.90
3228 3756 7.148490 CGATCAAGGTTTTGTTTCTTTGGTTTT 60.148 33.333 0.00 0.00 35.73 2.43
3306 3838 0.185175 TCTAGTGGATAGAGCGGCCA 59.815 55.000 2.24 0.00 35.50 5.36
3371 3904 7.989741 ACTAATAAGTATTCATGCAGAAGCAGT 59.010 33.333 0.00 0.00 44.38 4.40
3458 3991 9.796120 TTAACTGTTTGTATTGAGGTTGAAAAG 57.204 29.630 0.00 0.00 0.00 2.27
3461 3994 4.497473 TTGTATTGAGGTTGAAAAGGCG 57.503 40.909 0.00 0.00 0.00 5.52
3532 4065 0.616679 TTAAGCTCCCTAGGCGTGGT 60.617 55.000 2.05 0.79 34.52 4.16
3542 4075 0.688487 TAGGCGTGGTTTAGGCAGTT 59.312 50.000 0.00 0.00 41.84 3.16
3553 4086 8.333186 CGTGGTTTAGGCAGTTATATAGTTTTC 58.667 37.037 0.00 0.00 0.00 2.29
3673 4209 9.166173 CATTTGACATAGACTTCCAATTAGACA 57.834 33.333 0.00 0.00 0.00 3.41
3677 4213 8.687242 TGACATAGACTTCCAATTAGACACTAG 58.313 37.037 0.00 0.00 0.00 2.57
3724 4264 1.694150 AGCATGCCTAAGCGAATCCTA 59.306 47.619 15.66 0.00 44.31 2.94
3725 4265 2.072298 GCATGCCTAAGCGAATCCTAG 58.928 52.381 6.36 0.00 44.31 3.02
3726 4266 2.693069 CATGCCTAAGCGAATCCTAGG 58.307 52.381 0.82 0.82 44.31 3.02
3727 4267 3.218844 GCCTAAGCGAATCCTAGGC 57.781 57.895 2.96 3.74 45.20 3.93
3729 4269 2.156343 CCTAAGCGAATCCTAGGCAC 57.844 55.000 2.96 0.00 0.00 5.01
3730 4270 1.270358 CCTAAGCGAATCCTAGGCACC 60.270 57.143 2.96 0.00 0.00 5.01
3731 4271 0.387929 TAAGCGAATCCTAGGCACCG 59.612 55.000 2.96 7.97 0.00 4.94
3732 4272 2.925162 AAGCGAATCCTAGGCACCGC 62.925 60.000 24.25 24.25 42.52 5.68
3742 4282 2.586792 GGCACCGCCTCTCTGAAT 59.413 61.111 0.00 0.00 46.69 2.57
3743 4283 1.522580 GGCACCGCCTCTCTGAATC 60.523 63.158 0.00 0.00 46.69 2.52
3744 4284 1.522580 GCACCGCCTCTCTGAATCC 60.523 63.158 0.00 0.00 0.00 3.01
3745 4285 1.965754 GCACCGCCTCTCTGAATCCT 61.966 60.000 0.00 0.00 0.00 3.24
3817 4358 9.897349 GACCTAAACTAACGAGAAAAATATTCG 57.103 33.333 0.00 0.00 40.02 3.34
3884 4479 1.610673 AGTGGAGTGGACGATGGCT 60.611 57.895 0.00 0.00 0.00 4.75
3965 4560 1.220206 CTCGAAGCAGCACCCTGAT 59.780 57.895 0.00 0.00 41.77 2.90
4052 4647 2.611800 AGCCCACTCCTGATGCCA 60.612 61.111 0.00 0.00 0.00 4.92
4338 4933 0.317160 TCACGCGTTTGAGTGGAGAT 59.683 50.000 10.22 0.00 44.87 2.75
4493 5088 5.663795 AATTAGTCTCATTATGCACGCAG 57.336 39.130 0.00 0.00 0.00 5.18
4497 5092 1.077858 TCATTATGCACGCAGGGCA 60.078 52.632 7.88 7.88 46.66 5.36
4504 5099 2.669229 CACGCAGGGCACACATGA 60.669 61.111 0.00 0.00 31.04 3.07
4542 5137 9.617523 ATTTGATTTCAGGTTGATTTGAAAACT 57.382 25.926 4.06 0.00 43.95 2.66
4575 5170 6.336566 GTGATACTGTGAGACAAGTGATCAT 58.663 40.000 0.00 0.00 0.00 2.45
4623 5258 8.237811 ACGCCAATGAAGGATAAATCTTAATT 57.762 30.769 0.00 0.00 0.00 1.40
4636 5271 9.230932 GATAAATCTTAATTTCAGTGCAAGCTC 57.769 33.333 0.00 0.00 36.49 4.09
4792 5437 0.618458 AGGCTTCCTGGCGATGTTTA 59.382 50.000 0.00 0.00 46.88 2.01
4844 5489 1.269831 GGAGGCGTCTATGATGACCAC 60.270 57.143 6.34 0.00 33.70 4.16
4854 5499 6.071672 CGTCTATGATGACCACCTCAAGATAT 60.072 42.308 0.00 0.00 33.70 1.63
4858 5503 7.803487 ATGATGACCACCTCAAGATATGATA 57.197 36.000 0.00 0.00 37.44 2.15
4860 5505 8.211030 TGATGACCACCTCAAGATATGATATT 57.789 34.615 0.00 0.00 37.44 1.28
4888 5533 6.946340 TCAGTATTTCAGAGGTGCTCATAAA 58.054 36.000 0.00 0.00 32.06 1.40
4889 5534 7.394016 TCAGTATTTCAGAGGTGCTCATAAAA 58.606 34.615 0.00 0.00 32.06 1.52
4900 5545 6.476378 AGGTGCTCATAAAAATAGAGTGTGT 58.524 36.000 0.00 0.00 0.00 3.72
4901 5546 7.620880 AGGTGCTCATAAAAATAGAGTGTGTA 58.379 34.615 0.00 0.00 0.00 2.90
4953 5598 1.642728 TTTATATGCGCGTCAACGGT 58.357 45.000 4.79 0.00 40.23 4.83
4964 5609 2.730069 CGTCAACGGTTGTACTGTGTA 58.270 47.619 19.47 0.00 37.84 2.90
4999 5645 9.080097 AGTAAGATACGAGTGCCTAGATTAAAT 57.920 33.333 0.00 0.00 0.00 1.40
5052 5699 1.051812 CCTCGGCCCTACATCAATCT 58.948 55.000 0.00 0.00 0.00 2.40
5153 5804 5.606505 ACCGGCAAAAATAAGACAAAATGT 58.393 33.333 0.00 0.00 0.00 2.71
5186 5837 8.647796 ACATCTTATTATTAGACCGTCATCCAA 58.352 33.333 0.40 0.00 0.00 3.53
5190 5841 3.992943 ATTAGACCGTCATCCAAACCA 57.007 42.857 0.40 0.00 0.00 3.67
5197 5848 3.000727 CCGTCATCCAAACCAGTTCTAC 58.999 50.000 0.00 0.00 0.00 2.59
5198 5849 3.556213 CCGTCATCCAAACCAGTTCTACA 60.556 47.826 0.00 0.00 0.00 2.74
5213 5864 6.427242 CCAGTTCTACATAGCTCGTACTATCA 59.573 42.308 0.00 0.00 30.26 2.15
5261 5912 1.107538 AGCTTCCTCGCTACCGCATA 61.108 55.000 0.00 0.00 38.76 3.14
5273 5924 5.124936 TCGCTACCGCATAATGTAGTATGAT 59.875 40.000 3.74 0.00 37.39 2.45
5274 5925 5.805486 CGCTACCGCATAATGTAGTATGATT 59.195 40.000 3.74 0.00 37.39 2.57
5309 5960 8.427902 TTCATCCAGATGCTCTATACATAACT 57.572 34.615 2.63 0.00 38.65 2.24
5368 6020 5.009510 ACACACAATCATTCCGACAATTTCA 59.990 36.000 0.00 0.00 0.00 2.69
5373 6025 9.138062 CACAATCATTCCGACAATTTCAAATAA 57.862 29.630 0.00 0.00 0.00 1.40
5401 6053 2.363306 AATGCACAAACTCCCACAGA 57.637 45.000 0.00 0.00 0.00 3.41
5420 6072 7.132213 CCACAGAAATTAGTACCGCAATATTG 58.868 38.462 11.27 11.27 0.00 1.90
5421 6073 7.011950 CCACAGAAATTAGTACCGCAATATTGA 59.988 37.037 19.73 0.00 0.00 2.57
5422 6074 8.064222 CACAGAAATTAGTACCGCAATATTGAG 58.936 37.037 19.73 15.63 0.00 3.02
5423 6075 7.769044 ACAGAAATTAGTACCGCAATATTGAGT 59.231 33.333 19.73 16.34 0.00 3.41
5424 6076 8.064222 CAGAAATTAGTACCGCAATATTGAGTG 58.936 37.037 19.73 11.86 0.00 3.51
5425 6077 6.861065 AATTAGTACCGCAATATTGAGTGG 57.139 37.500 19.73 17.53 0.00 4.00
5426 6078 3.194005 AGTACCGCAATATTGAGTGGG 57.806 47.619 19.73 14.78 33.72 4.61
5428 6080 2.032981 CCGCAATATTGAGTGGGGC 58.967 57.895 19.73 0.61 45.27 5.80
5429 6081 1.648720 CGCAATATTGAGTGGGGCG 59.351 57.895 19.73 9.47 36.93 6.13
5430 6082 1.095228 CGCAATATTGAGTGGGGCGT 61.095 55.000 19.73 0.00 38.36 5.68
5431 6083 1.102978 GCAATATTGAGTGGGGCGTT 58.897 50.000 19.73 0.00 0.00 4.84
5432 6084 2.294074 GCAATATTGAGTGGGGCGTTA 58.706 47.619 19.73 0.00 0.00 3.18
5433 6085 2.884639 GCAATATTGAGTGGGGCGTTAT 59.115 45.455 19.73 0.00 0.00 1.89
5434 6086 3.304659 GCAATATTGAGTGGGGCGTTATG 60.305 47.826 19.73 0.00 0.00 1.90
5435 6087 2.631160 TATTGAGTGGGGCGTTATGG 57.369 50.000 0.00 0.00 0.00 2.74
5436 6088 0.916086 ATTGAGTGGGGCGTTATGGA 59.084 50.000 0.00 0.00 0.00 3.41
5437 6089 0.251916 TTGAGTGGGGCGTTATGGAG 59.748 55.000 0.00 0.00 0.00 3.86
5438 6090 1.146263 GAGTGGGGCGTTATGGAGG 59.854 63.158 0.00 0.00 0.00 4.30
5439 6091 1.306654 AGTGGGGCGTTATGGAGGA 60.307 57.895 0.00 0.00 0.00 3.71
5440 6092 1.153229 GTGGGGCGTTATGGAGGAC 60.153 63.158 0.00 0.00 0.00 3.85
5441 6093 2.108362 GGGGCGTTATGGAGGACG 59.892 66.667 0.00 0.00 41.89 4.79
5442 6094 2.428925 GGGGCGTTATGGAGGACGA 61.429 63.158 0.00 0.00 41.53 4.20
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 5.043248 GGCATTTTTGTCCATTTAGATCGG 58.957 41.667 0.00 0.00 0.00 4.18
1 2 4.734854 CGGCATTTTTGTCCATTTAGATCG 59.265 41.667 0.00 0.00 0.00 3.69
2 3 5.650543 ACGGCATTTTTGTCCATTTAGATC 58.349 37.500 0.00 0.00 0.00 2.75
3 4 5.650543 GACGGCATTTTTGTCCATTTAGAT 58.349 37.500 0.00 0.00 0.00 1.98
4 5 5.054390 GACGGCATTTTTGTCCATTTAGA 57.946 39.130 0.00 0.00 0.00 2.10
11 12 0.312729 AACGGACGGCATTTTTGTCC 59.687 50.000 0.00 0.55 46.91 4.02
12 13 1.784283 CAAACGGACGGCATTTTTGTC 59.216 47.619 0.00 0.00 0.00 3.18
13 14 1.405821 TCAAACGGACGGCATTTTTGT 59.594 42.857 7.97 0.00 0.00 2.83
14 15 2.050691 CTCAAACGGACGGCATTTTTG 58.949 47.619 0.00 0.00 0.00 2.44
15 16 1.679153 ACTCAAACGGACGGCATTTTT 59.321 42.857 0.00 0.00 0.00 1.94
16 17 1.265905 GACTCAAACGGACGGCATTTT 59.734 47.619 0.00 0.00 0.00 1.82
17 18 0.872388 GACTCAAACGGACGGCATTT 59.128 50.000 0.00 0.00 0.00 2.32
18 19 1.289109 CGACTCAAACGGACGGCATT 61.289 55.000 0.00 0.00 0.00 3.56
19 20 1.736645 CGACTCAAACGGACGGCAT 60.737 57.895 0.00 0.00 0.00 4.40
20 21 2.355363 CGACTCAAACGGACGGCA 60.355 61.111 0.00 0.00 0.00 5.69
27 28 0.953471 TCAATGGGCCGACTCAAACG 60.953 55.000 0.00 0.00 0.00 3.60
28 29 1.068541 GTTCAATGGGCCGACTCAAAC 60.069 52.381 0.00 0.00 0.00 2.93
29 30 1.202879 AGTTCAATGGGCCGACTCAAA 60.203 47.619 0.00 0.00 0.00 2.69
30 31 0.400213 AGTTCAATGGGCCGACTCAA 59.600 50.000 0.00 0.00 0.00 3.02
31 32 0.400213 AAGTTCAATGGGCCGACTCA 59.600 50.000 0.00 0.00 0.00 3.41
32 33 0.804989 CAAGTTCAATGGGCCGACTC 59.195 55.000 0.00 0.00 0.00 3.36
33 34 1.244019 GCAAGTTCAATGGGCCGACT 61.244 55.000 0.00 0.00 0.00 4.18
34 35 1.212751 GCAAGTTCAATGGGCCGAC 59.787 57.895 0.00 0.00 0.00 4.79
35 36 0.960364 GAGCAAGTTCAATGGGCCGA 60.960 55.000 0.00 0.00 0.00 5.54
36 37 0.962356 AGAGCAAGTTCAATGGGCCG 60.962 55.000 0.00 0.00 0.00 6.13
37 38 1.260544 AAGAGCAAGTTCAATGGGCC 58.739 50.000 0.00 0.00 0.00 5.80
38 39 2.424956 CCTAAGAGCAAGTTCAATGGGC 59.575 50.000 0.00 0.00 0.00 5.36
39 40 3.955471 TCCTAAGAGCAAGTTCAATGGG 58.045 45.455 0.00 0.00 0.00 4.00
40 41 7.050377 TCTATTCCTAAGAGCAAGTTCAATGG 58.950 38.462 0.00 0.00 0.00 3.16
41 42 8.498054 TTCTATTCCTAAGAGCAAGTTCAATG 57.502 34.615 0.00 0.00 0.00 2.82
42 43 9.520515 TTTTCTATTCCTAAGAGCAAGTTCAAT 57.479 29.630 0.00 0.00 0.00 2.57
43 44 8.918202 TTTTCTATTCCTAAGAGCAAGTTCAA 57.082 30.769 0.00 0.00 0.00 2.69
44 45 8.784043 GTTTTTCTATTCCTAAGAGCAAGTTCA 58.216 33.333 0.00 0.00 0.00 3.18
45 46 9.004717 AGTTTTTCTATTCCTAAGAGCAAGTTC 57.995 33.333 0.00 0.00 0.00 3.01
46 47 8.926092 AGTTTTTCTATTCCTAAGAGCAAGTT 57.074 30.769 0.00 0.00 0.00 2.66
47 48 8.157476 TGAGTTTTTCTATTCCTAAGAGCAAGT 58.843 33.333 0.00 0.00 0.00 3.16
48 49 8.553459 TGAGTTTTTCTATTCCTAAGAGCAAG 57.447 34.615 0.00 0.00 0.00 4.01
49 50 8.784043 GTTGAGTTTTTCTATTCCTAAGAGCAA 58.216 33.333 0.00 0.00 0.00 3.91
50 51 8.157476 AGTTGAGTTTTTCTATTCCTAAGAGCA 58.843 33.333 0.00 0.00 0.00 4.26
51 52 8.554835 AGTTGAGTTTTTCTATTCCTAAGAGC 57.445 34.615 0.00 0.00 0.00 4.09
163 164 1.378531 GCTGTGTGTGTGGAACTTGA 58.621 50.000 0.00 0.00 38.04 3.02
169 170 3.157949 TCGGGCTGTGTGTGTGGA 61.158 61.111 0.00 0.00 0.00 4.02
171 172 0.944311 GTACTCGGGCTGTGTGTGTG 60.944 60.000 11.13 0.00 0.00 3.82
172 173 1.113517 AGTACTCGGGCTGTGTGTGT 61.114 55.000 11.13 0.00 0.00 3.72
190 191 2.299297 ACTCGTCTGGTGAGGGTAAAAG 59.701 50.000 0.00 0.00 37.79 2.27
201 202 2.817258 CTCTTTCTCTGACTCGTCTGGT 59.183 50.000 4.46 0.00 0.00 4.00
204 205 4.020573 TCTCTCTCTTTCTCTGACTCGTCT 60.021 45.833 0.00 0.00 0.00 4.18
207 211 4.503910 TCTCTCTCTCTTTCTCTGACTCG 58.496 47.826 0.00 0.00 0.00 4.18
213 217 5.195940 CACATCCTCTCTCTCTCTTTCTCT 58.804 45.833 0.00 0.00 0.00 3.10
214 218 4.202050 GCACATCCTCTCTCTCTCTTTCTC 60.202 50.000 0.00 0.00 0.00 2.87
215 219 3.701040 GCACATCCTCTCTCTCTCTTTCT 59.299 47.826 0.00 0.00 0.00 2.52
216 220 3.701040 AGCACATCCTCTCTCTCTCTTTC 59.299 47.826 0.00 0.00 0.00 2.62
217 221 3.711863 AGCACATCCTCTCTCTCTCTTT 58.288 45.455 0.00 0.00 0.00 2.52
218 222 3.386932 AGCACATCCTCTCTCTCTCTT 57.613 47.619 0.00 0.00 0.00 2.85
219 223 4.729552 ATAGCACATCCTCTCTCTCTCT 57.270 45.455 0.00 0.00 0.00 3.10
220 224 4.083324 CGAATAGCACATCCTCTCTCTCTC 60.083 50.000 0.00 0.00 0.00 3.20
251 255 5.432885 AAACAAACTGGGCGTATATATGC 57.567 39.130 17.18 17.18 37.49 3.14
375 379 5.459110 TTGAAAAATCGTATCGCTACCAC 57.541 39.130 0.00 0.00 0.00 4.16
379 383 8.246908 TCTTCTTTTGAAAAATCGTATCGCTA 57.753 30.769 0.00 0.00 38.07 4.26
387 391 7.632132 GCTGTGTTTTCTTCTTTTGAAAAATCG 59.368 33.333 0.00 0.00 42.59 3.34
400 404 1.725973 GCGGCGCTGTGTTTTCTTC 60.726 57.895 26.86 0.00 0.00 2.87
401 405 2.331451 GCGGCGCTGTGTTTTCTT 59.669 55.556 26.86 0.00 0.00 2.52
515 520 0.806102 CGGGTCGTGTAATGCTGGAG 60.806 60.000 0.00 0.00 0.00 3.86
529 534 2.818274 GGCGTGATTGGACGGGTC 60.818 66.667 0.00 0.00 39.81 4.46
618 623 2.347452 CACTAGTGTTTGATTACGGGCG 59.653 50.000 15.06 0.00 0.00 6.13
620 625 3.934068 ACCACTAGTGTTTGATTACGGG 58.066 45.455 21.18 4.15 0.00 5.28
641 646 1.323412 ACCATGTTACCTGCGCAAAA 58.677 45.000 13.05 3.15 0.00 2.44
647 652 1.134946 GCATCCAACCATGTTACCTGC 59.865 52.381 0.00 0.00 0.00 4.85
822 828 3.979948 TCTTGGACGTCATTGTTCGTTA 58.020 40.909 18.91 2.84 40.39 3.18
825 831 4.625742 ACTAATCTTGGACGTCATTGTTCG 59.374 41.667 18.91 4.25 0.00 3.95
867 873 7.749570 CGCATAGACTAACCAGTACATATACAC 59.250 40.741 0.00 0.00 34.21 2.90
893 899 7.420800 CCCAAGCATAATTTTCTGAGATGTAC 58.579 38.462 0.00 0.00 0.00 2.90
948 954 1.619654 TGGCAGTTGGTGGAATCAAG 58.380 50.000 0.00 0.00 0.00 3.02
1062 1068 2.366469 TCTGCCACAGAGGAAGACC 58.634 57.895 0.00 0.00 45.63 3.85
1069 1075 0.954452 GGGTTGTTTCTGCCACAGAG 59.046 55.000 0.00 0.00 41.75 3.35
1125 1131 1.376812 GAAAGGGATTGGCGTCGGT 60.377 57.895 0.00 0.00 0.00 4.69
1144 1150 0.321653 AGGTGGAAGATGTTGCCGAC 60.322 55.000 0.00 0.00 0.00 4.79
1278 1284 2.094700 GTCGTACTTCTGCAGGATGTCA 60.095 50.000 15.13 0.00 39.31 3.58
1470 1476 0.617249 CCAGCTCCCTCACCTTCTCT 60.617 60.000 0.00 0.00 0.00 3.10
1626 1632 1.153208 CCTGATGAGCACCTCCAGC 60.153 63.158 0.00 0.00 0.00 4.85
1848 1854 1.227205 GAGGCTGAGCTGATCCACG 60.227 63.158 3.72 0.00 0.00 4.94
1937 1944 4.153835 CGTACTACTAGGCTACCAGCATAC 59.846 50.000 0.00 0.00 44.75 2.39
1948 1955 4.382345 ACACCATTTCGTACTACTAGGC 57.618 45.455 0.00 0.00 0.00 3.93
1951 1958 6.088016 ACACAACACCATTTCGTACTACTA 57.912 37.500 0.00 0.00 0.00 1.82
1952 1959 4.952460 ACACAACACCATTTCGTACTACT 58.048 39.130 0.00 0.00 0.00 2.57
1953 1960 4.151157 GGACACAACACCATTTCGTACTAC 59.849 45.833 0.00 0.00 0.00 2.73
1960 1967 2.873472 TGTACGGACACAACACCATTTC 59.127 45.455 0.00 0.00 0.00 2.17
1992 2000 6.914757 CGAGAAGATTTTATCCTTTGGATTGC 59.085 38.462 4.30 0.00 39.79 3.56
2008 2016 5.728637 AAAAGAAATTGCCCGAGAAGATT 57.271 34.783 0.00 0.00 0.00 2.40
2029 2037 6.238703 GCAAATCTTTTGCCTCCATTCAAAAA 60.239 34.615 12.74 0.00 40.36 1.94
2030 2038 5.239087 GCAAATCTTTTGCCTCCATTCAAAA 59.761 36.000 12.74 0.00 39.13 2.44
2032 2040 4.317488 GCAAATCTTTTGCCTCCATTCAA 58.683 39.130 12.74 0.00 39.38 2.69
2042 2050 8.931385 TTTAATAGATGAGGCAAATCTTTTGC 57.069 30.769 14.88 14.88 44.22 3.68
2050 2058 9.784531 CCTCTCTTATTTAATAGATGAGGCAAA 57.215 33.333 12.49 0.00 33.32 3.68
2051 2059 9.159254 TCCTCTCTTATTTAATAGATGAGGCAA 57.841 33.333 16.69 5.91 38.61 4.52
2052 2060 8.727100 TCCTCTCTTATTTAATAGATGAGGCA 57.273 34.615 16.69 8.91 38.61 4.75
2069 2077 9.082313 TGATTTTTCTTTTGCTATTCCTCTCTT 57.918 29.630 0.00 0.00 0.00 2.85
2071 2079 8.518702 ACTGATTTTTCTTTTGCTATTCCTCTC 58.481 33.333 0.00 0.00 0.00 3.20
2075 2083 7.171337 TGCAACTGATTTTTCTTTTGCTATTCC 59.829 33.333 5.77 0.00 40.01 3.01
2076 2084 8.075593 TGCAACTGATTTTTCTTTTGCTATTC 57.924 30.769 5.77 0.00 40.01 1.75
2078 2086 7.436118 TCTGCAACTGATTTTTCTTTTGCTAT 58.564 30.769 5.77 0.00 40.01 2.97
2079 2087 6.804677 TCTGCAACTGATTTTTCTTTTGCTA 58.195 32.000 5.77 0.00 40.01 3.49
2081 2089 5.971895 TCTGCAACTGATTTTTCTTTTGC 57.028 34.783 0.00 0.00 39.80 3.68
2082 2090 6.536224 ACCTTCTGCAACTGATTTTTCTTTTG 59.464 34.615 0.00 0.00 0.00 2.44
2083 2091 6.643388 ACCTTCTGCAACTGATTTTTCTTTT 58.357 32.000 0.00 0.00 0.00 2.27
2084 2092 6.225981 ACCTTCTGCAACTGATTTTTCTTT 57.774 33.333 0.00 0.00 0.00 2.52
2085 2093 5.859205 ACCTTCTGCAACTGATTTTTCTT 57.141 34.783 0.00 0.00 0.00 2.52
2086 2094 6.959639 TTACCTTCTGCAACTGATTTTTCT 57.040 33.333 0.00 0.00 0.00 2.52
2087 2095 7.706607 AGTTTTACCTTCTGCAACTGATTTTTC 59.293 33.333 0.00 0.00 0.00 2.29
2102 2110 4.096532 GCCATTGCCTCTAGTTTTACCTTC 59.903 45.833 0.00 0.00 0.00 3.46
2108 2116 6.664428 TTTTAAGCCATTGCCTCTAGTTTT 57.336 33.333 0.00 0.00 38.69 2.43
2141 2151 9.277783 AGATCCTCAAATAGCACATTGTTATAC 57.722 33.333 0.00 0.00 0.00 1.47
2148 2158 7.707624 TCAAAAGATCCTCAAATAGCACATT 57.292 32.000 0.00 0.00 0.00 2.71
2149 2159 7.893124 ATCAAAAGATCCTCAAATAGCACAT 57.107 32.000 0.00 0.00 0.00 3.21
2153 2163 9.813446 AAATCAATCAAAAGATCCTCAAATAGC 57.187 29.630 0.00 0.00 0.00 2.97
2159 2170 7.543359 ACCAAAATCAATCAAAAGATCCTCA 57.457 32.000 0.00 0.00 0.00 3.86
2184 2195 9.230122 TGCATCAGATTACATAGAAGAAACAAA 57.770 29.630 0.00 0.00 0.00 2.83
2185 2196 8.668353 GTGCATCAGATTACATAGAAGAAACAA 58.332 33.333 0.00 0.00 0.00 2.83
2186 2197 8.043113 AGTGCATCAGATTACATAGAAGAAACA 58.957 33.333 0.00 0.00 0.00 2.83
2187 2198 8.430801 AGTGCATCAGATTACATAGAAGAAAC 57.569 34.615 0.00 0.00 0.00 2.78
2189 2200 9.702494 CATAGTGCATCAGATTACATAGAAGAA 57.298 33.333 0.00 0.00 0.00 2.52
2190 2201 8.864087 ACATAGTGCATCAGATTACATAGAAGA 58.136 33.333 0.00 0.00 0.00 2.87
2193 2204 8.743714 CCTACATAGTGCATCAGATTACATAGA 58.256 37.037 0.00 0.00 0.00 1.98
2194 2205 8.526978 ACCTACATAGTGCATCAGATTACATAG 58.473 37.037 0.00 0.00 0.00 2.23
2195 2206 8.422577 ACCTACATAGTGCATCAGATTACATA 57.577 34.615 0.00 0.00 0.00 2.29
2196 2207 7.308450 ACCTACATAGTGCATCAGATTACAT 57.692 36.000 0.00 0.00 0.00 2.29
2197 2208 6.731292 ACCTACATAGTGCATCAGATTACA 57.269 37.500 0.00 0.00 0.00 2.41
2198 2209 9.360093 GAATACCTACATAGTGCATCAGATTAC 57.640 37.037 0.00 0.00 0.00 1.89
2199 2210 9.088987 TGAATACCTACATAGTGCATCAGATTA 57.911 33.333 0.00 0.00 0.00 1.75
2200 2211 7.966812 TGAATACCTACATAGTGCATCAGATT 58.033 34.615 0.00 0.00 0.00 2.40
2201 2212 7.544804 TGAATACCTACATAGTGCATCAGAT 57.455 36.000 0.00 0.00 0.00 2.90
2202 2213 6.976934 TGAATACCTACATAGTGCATCAGA 57.023 37.500 0.00 0.00 0.00 3.27
2203 2214 8.613060 AATTGAATACCTACATAGTGCATCAG 57.387 34.615 0.00 0.00 0.00 2.90
2238 2249 9.395707 GCACATTTTGAAATTCATATTTGCAAA 57.604 25.926 15.44 15.44 34.16 3.68
2239 2250 8.565416 TGCACATTTTGAAATTCATATTTGCAA 58.435 25.926 20.20 0.00 34.53 4.08
2240 2251 8.095937 TGCACATTTTGAAATTCATATTTGCA 57.904 26.923 19.32 19.32 34.79 4.08
2241 2252 8.951954 TTGCACATTTTGAAATTCATATTTGC 57.048 26.923 16.20 16.20 34.16 3.68
2301 2312 9.246670 ACAATGTTCTCATTTCCATCTAAATCA 57.753 29.630 0.00 0.00 41.66 2.57
2302 2313 9.727627 GACAATGTTCTCATTTCCATCTAAATC 57.272 33.333 0.00 0.00 41.66 2.17
2303 2314 9.246670 TGACAATGTTCTCATTTCCATCTAAAT 57.753 29.630 0.00 0.00 41.66 1.40
2304 2315 8.634335 TGACAATGTTCTCATTTCCATCTAAA 57.366 30.769 0.00 0.00 41.66 1.85
2305 2316 8.812513 ATGACAATGTTCTCATTTCCATCTAA 57.187 30.769 0.00 0.00 41.66 2.10
2306 2317 9.551734 CTATGACAATGTTCTCATTTCCATCTA 57.448 33.333 0.00 0.00 41.66 1.98
2307 2318 8.270030 TCTATGACAATGTTCTCATTTCCATCT 58.730 33.333 0.00 0.00 41.66 2.90
2308 2319 8.442632 TCTATGACAATGTTCTCATTTCCATC 57.557 34.615 0.00 0.00 41.66 3.51
2309 2320 8.812513 TTCTATGACAATGTTCTCATTTCCAT 57.187 30.769 0.00 0.00 41.66 3.41
2310 2321 8.514594 GTTTCTATGACAATGTTCTCATTTCCA 58.485 33.333 0.00 0.00 41.66 3.53
2311 2322 8.734386 AGTTTCTATGACAATGTTCTCATTTCC 58.266 33.333 0.00 0.00 41.66 3.13
2316 2327 9.725019 ACATAAGTTTCTATGACAATGTTCTCA 57.275 29.630 0.00 0.00 34.07 3.27
2318 2329 9.725019 TGACATAAGTTTCTATGACAATGTTCT 57.275 29.630 0.00 0.00 33.16 3.01
2321 2332 9.896645 AGATGACATAAGTTTCTATGACAATGT 57.103 29.630 0.00 0.00 37.45 2.71
2325 2336 9.538508 CATCAGATGACATAAGTTTCTATGACA 57.461 33.333 4.11 0.00 37.99 3.58
2326 2337 9.539825 ACATCAGATGACATAAGTTTCTATGAC 57.460 33.333 17.81 0.00 34.07 3.06
2344 2355 6.422344 AGAGTGCATCAGATTACATCAGAT 57.578 37.500 0.00 0.00 36.14 2.90
2345 2356 5.866159 AGAGTGCATCAGATTACATCAGA 57.134 39.130 0.00 0.00 0.00 3.27
2346 2357 9.872721 ATTATAGAGTGCATCAGATTACATCAG 57.127 33.333 0.00 0.00 0.00 2.90
2350 2361 9.481340 GTGAATTATAGAGTGCATCAGATTACA 57.519 33.333 0.00 0.00 0.00 2.41
2351 2362 9.481340 TGTGAATTATAGAGTGCATCAGATTAC 57.519 33.333 0.00 0.00 0.00 1.89
2392 2403 9.965902 ATGTAGAAGTCTCCACTTTAATTCAAT 57.034 29.630 0.00 0.00 43.37 2.57
2399 2410 9.871238 GTGAAATATGTAGAAGTCTCCACTTTA 57.129 33.333 0.00 0.00 43.37 1.85
2400 2411 8.375506 TGTGAAATATGTAGAAGTCTCCACTTT 58.624 33.333 0.00 0.00 43.37 2.66
2401 2412 7.907389 TGTGAAATATGTAGAAGTCTCCACTT 58.093 34.615 0.00 0.00 46.21 3.16
2402 2413 7.482169 TGTGAAATATGTAGAAGTCTCCACT 57.518 36.000 0.00 0.00 0.00 4.00
2403 2414 9.988815 ATATGTGAAATATGTAGAAGTCTCCAC 57.011 33.333 0.00 0.00 0.00 4.02
2404 2415 9.987272 CATATGTGAAATATGTAGAAGTCTCCA 57.013 33.333 0.00 0.00 0.00 3.86
2422 2433 9.599866 ACATCGAAGAAACTAAATCATATGTGA 57.400 29.630 1.90 0.00 43.58 3.58
2429 2440 9.869757 TCAGATTACATCGAAGAAACTAAATCA 57.130 29.630 0.00 0.00 43.58 2.57
2499 2510 9.596677 CGTTTGATAATTGCACATTTTCAAAAT 57.403 25.926 23.99 0.00 34.51 1.82
2500 2511 8.607459 ACGTTTGATAATTGCACATTTTCAAAA 58.393 25.926 23.99 14.90 34.51 2.44
2501 2512 8.136057 ACGTTTGATAATTGCACATTTTCAAA 57.864 26.923 21.46 21.46 31.33 2.69
2502 2513 7.651304 AGACGTTTGATAATTGCACATTTTCAA 59.349 29.630 15.97 15.97 0.00 2.69
2503 2514 7.144661 AGACGTTTGATAATTGCACATTTTCA 58.855 30.769 0.00 0.00 0.00 2.69
2504 2515 7.201350 GGAGACGTTTGATAATTGCACATTTTC 60.201 37.037 0.00 0.00 0.00 2.29
2505 2516 6.586082 GGAGACGTTTGATAATTGCACATTTT 59.414 34.615 0.00 0.00 0.00 1.82
2506 2517 6.092748 GGAGACGTTTGATAATTGCACATTT 58.907 36.000 0.00 0.00 0.00 2.32
2507 2518 5.182950 TGGAGACGTTTGATAATTGCACATT 59.817 36.000 0.00 0.00 0.00 2.71
2508 2519 4.699735 TGGAGACGTTTGATAATTGCACAT 59.300 37.500 0.00 0.00 0.00 3.21
2509 2520 4.068599 TGGAGACGTTTGATAATTGCACA 58.931 39.130 0.00 0.00 0.00 4.57
2598 2609 8.828688 ACTCGAATTGTTAACTAAAAGCTACT 57.171 30.769 7.22 0.00 0.00 2.57
2612 2787 7.912250 CCTACTTGTATACGTACTCGAATTGTT 59.088 37.037 0.00 0.00 40.62 2.83
2615 2790 6.514048 GCCCTACTTGTATACGTACTCGAATT 60.514 42.308 0.00 0.00 40.62 2.17
2617 2792 4.273480 GCCCTACTTGTATACGTACTCGAA 59.727 45.833 0.00 0.00 40.62 3.71
2619 2794 3.363378 CGCCCTACTTGTATACGTACTCG 60.363 52.174 0.00 0.00 43.34 4.18
2620 2795 3.561725 ACGCCCTACTTGTATACGTACTC 59.438 47.826 0.00 0.00 0.00 2.59
2621 2796 3.545703 ACGCCCTACTTGTATACGTACT 58.454 45.455 0.00 0.00 0.00 2.73
2625 2800 3.307782 CCAAAACGCCCTACTTGTATACG 59.692 47.826 0.00 0.00 0.00 3.06
2626 2801 4.506758 TCCAAAACGCCCTACTTGTATAC 58.493 43.478 0.00 0.00 0.00 1.47
2627 2802 4.383335 CCTCCAAAACGCCCTACTTGTATA 60.383 45.833 0.00 0.00 0.00 1.47
2628 2803 3.606687 CTCCAAAACGCCCTACTTGTAT 58.393 45.455 0.00 0.00 0.00 2.29
2630 2805 1.544759 CCTCCAAAACGCCCTACTTGT 60.545 52.381 0.00 0.00 0.00 3.16
2631 2806 1.165270 CCTCCAAAACGCCCTACTTG 58.835 55.000 0.00 0.00 0.00 3.16
2632 2807 1.061546 TCCTCCAAAACGCCCTACTT 58.938 50.000 0.00 0.00 0.00 2.24
2657 2835 4.104383 TCAAAAGAAAGAGCTCCATGGT 57.896 40.909 12.58 0.00 0.00 3.55
2689 2868 5.699097 TTAAAACTTCAAGGTGATTCCGG 57.301 39.130 0.00 0.00 41.99 5.14
2690 2869 7.422399 TCTTTTAAAACTTCAAGGTGATTCCG 58.578 34.615 0.00 0.00 41.99 4.30
2691 2870 9.764363 AATCTTTTAAAACTTCAAGGTGATTCC 57.236 29.630 0.00 0.00 0.00 3.01
2695 2874 9.184523 TCAGAATCTTTTAAAACTTCAAGGTGA 57.815 29.630 15.65 10.19 0.00 4.02
2696 2875 9.801873 TTCAGAATCTTTTAAAACTTCAAGGTG 57.198 29.630 15.65 8.76 0.00 4.00
2709 2892 9.515020 GTGTGTGATTGTTTTCAGAATCTTTTA 57.485 29.630 0.00 0.00 0.00 1.52
2714 2897 7.648908 TGAATGTGTGTGATTGTTTTCAGAATC 59.351 33.333 0.00 0.00 0.00 2.52
2790 2994 6.882610 TTGTCATTTTGTGTAGCTCTCATT 57.117 33.333 0.00 0.00 0.00 2.57
2791 2995 6.882610 TTTGTCATTTTGTGTAGCTCTCAT 57.117 33.333 0.00 0.00 0.00 2.90
2797 3001 5.387342 GCGTGAATTTGTCATTTTGTGTAGC 60.387 40.000 0.00 0.00 38.90 3.58
2921 3428 6.546403 AGACGGATGTATACTATGTGAGTGTT 59.454 38.462 4.17 0.00 39.39 3.32
2926 3433 6.293244 CGTTCAGACGGATGTATACTATGTGA 60.293 42.308 4.17 0.00 45.32 3.58
2945 3454 4.666176 CAGAAAACAATCACGTTCGTTCAG 59.334 41.667 0.00 0.00 0.00 3.02
2952 3461 8.594687 CAAGAAAAATCAGAAAACAATCACGTT 58.405 29.630 0.00 0.00 0.00 3.99
2953 3462 7.973388 TCAAGAAAAATCAGAAAACAATCACGT 59.027 29.630 0.00 0.00 0.00 4.49
2954 3463 8.338985 TCAAGAAAAATCAGAAAACAATCACG 57.661 30.769 0.00 0.00 0.00 4.35
2999 3508 8.629158 GGAGCCCTTTTTAAAACATTGATTTTT 58.371 29.630 0.00 0.00 33.80 1.94
3000 3509 7.777440 TGGAGCCCTTTTTAAAACATTGATTTT 59.223 29.630 0.00 0.91 35.89 1.82
3001 3510 7.286313 TGGAGCCCTTTTTAAAACATTGATTT 58.714 30.769 0.00 0.00 0.00 2.17
3002 3511 6.836242 TGGAGCCCTTTTTAAAACATTGATT 58.164 32.000 0.00 0.00 0.00 2.57
3003 3512 6.432403 TGGAGCCCTTTTTAAAACATTGAT 57.568 33.333 0.00 0.00 0.00 2.57
3004 3513 5.878406 TGGAGCCCTTTTTAAAACATTGA 57.122 34.783 0.00 0.00 0.00 2.57
3005 3514 5.412286 CCATGGAGCCCTTTTTAAAACATTG 59.588 40.000 5.56 0.00 0.00 2.82
3006 3515 5.309282 TCCATGGAGCCCTTTTTAAAACATT 59.691 36.000 11.44 0.00 0.00 2.71
3007 3516 4.843516 TCCATGGAGCCCTTTTTAAAACAT 59.156 37.500 11.44 0.00 0.00 2.71
3008 3517 4.227197 TCCATGGAGCCCTTTTTAAAACA 58.773 39.130 11.44 0.00 0.00 2.83
3009 3518 4.820897 CTCCATGGAGCCCTTTTTAAAAC 58.179 43.478 28.45 0.00 35.31 2.43
3035 3544 4.662145 CACGAAAATGCTAAATGGAGGAC 58.338 43.478 0.00 0.00 0.00 3.85
3044 3553 5.871465 TTGTAGATGCACGAAAATGCTAA 57.129 34.783 0.00 0.00 46.28 3.09
3079 3588 7.345392 AGCCCCATATCTTTGATACACATTTTT 59.655 33.333 0.00 0.00 0.00 1.94
3083 3611 5.589367 AGCCCCATATCTTTGATACACAT 57.411 39.130 0.00 0.00 0.00 3.21
3101 3629 1.098050 CAGTTACATGCCTGAAGCCC 58.902 55.000 0.00 0.00 42.71 5.19
3105 3633 5.647658 CAGTTTATCCAGTTACATGCCTGAA 59.352 40.000 8.71 0.00 0.00 3.02
3148 3676 2.439156 GTGCACCATGAGGGGAGC 60.439 66.667 5.22 0.00 42.79 4.70
3158 3686 4.956075 TCTCTACAGATAAGATGTGCACCA 59.044 41.667 15.69 2.61 32.02 4.17
3175 3703 5.739161 CACTGCCGCAATTAAAAATCTCTAC 59.261 40.000 0.00 0.00 0.00 2.59
3192 3720 0.179100 ACCTTGATCGATCACTGCCG 60.179 55.000 27.28 14.50 36.36 5.69
3228 3756 3.181525 CGCACGTGCACTTGACATATAAA 60.182 43.478 37.03 0.00 42.21 1.40
3233 3761 0.598942 TACGCACGTGCACTTGACAT 60.599 50.000 37.03 15.20 42.21 3.06
3234 3762 1.212455 CTACGCACGTGCACTTGACA 61.212 55.000 37.03 14.03 42.21 3.58
3418 3951 6.537660 ACAAACAGTTAATATCGTTCCCTAGC 59.462 38.462 0.00 0.00 0.00 3.42
3446 3979 1.152860 TGGCGCCTTTTCAACCTCA 60.153 52.632 29.70 0.00 0.00 3.86
3458 3991 2.182842 CATGCTTACTCCTGGCGCC 61.183 63.158 22.73 22.73 0.00 6.53
3461 3994 0.543749 ACTCCATGCTTACTCCTGGC 59.456 55.000 0.00 0.00 0.00 4.85
3494 4027 1.982938 GCCCCACCTAGACGACACT 60.983 63.158 0.00 0.00 0.00 3.55
3509 4042 1.452368 GCCTAGGGAGCTTAAGCCC 59.548 63.158 23.71 21.93 45.04 5.19
3510 4043 1.069935 CGCCTAGGGAGCTTAAGCC 59.930 63.158 23.71 14.64 43.38 4.35
3673 4209 2.699954 CAATGACGAACCTTGCCTAGT 58.300 47.619 0.00 0.00 0.00 2.57
3677 4213 4.868195 GCAATGACGAACCTTGCC 57.132 55.556 12.77 1.48 41.78 4.52
3726 4266 1.522580 GGATTCAGAGAGGCGGTGC 60.523 63.158 0.00 0.00 0.00 5.01
3727 4267 1.339610 CTAGGATTCAGAGAGGCGGTG 59.660 57.143 0.00 0.00 0.00 4.94
3728 4268 1.698506 CTAGGATTCAGAGAGGCGGT 58.301 55.000 0.00 0.00 0.00 5.68
3729 4269 0.965439 CCTAGGATTCAGAGAGGCGG 59.035 60.000 1.05 0.00 0.00 6.13
3730 4270 0.316841 GCCTAGGATTCAGAGAGGCG 59.683 60.000 14.75 0.00 43.05 5.52
3732 4272 1.691434 GGTGCCTAGGATTCAGAGAGG 59.309 57.143 14.75 0.00 0.00 3.69
3733 4273 1.339610 CGGTGCCTAGGATTCAGAGAG 59.660 57.143 14.75 0.00 0.00 3.20
3734 4274 1.403814 CGGTGCCTAGGATTCAGAGA 58.596 55.000 14.75 0.00 0.00 3.10
3735 4275 0.249657 GCGGTGCCTAGGATTCAGAG 60.250 60.000 14.75 0.00 0.00 3.35
3736 4276 1.686325 GGCGGTGCCTAGGATTCAGA 61.686 60.000 14.75 0.00 46.69 3.27
3737 4277 1.227674 GGCGGTGCCTAGGATTCAG 60.228 63.158 14.75 3.60 46.69 3.02
3738 4278 2.908015 GGCGGTGCCTAGGATTCA 59.092 61.111 14.75 0.00 46.69 2.57
3884 4479 2.978824 GGTTGCCGGAGTAGCTCA 59.021 61.111 5.05 0.00 31.08 4.26
4091 4686 3.357079 GTGCCCTTGGACACAGCG 61.357 66.667 1.21 0.00 36.77 5.18
4094 4689 1.152777 CTTGGTGCCCTTGGACACA 60.153 57.895 8.28 0.00 38.57 3.72
4313 4908 1.855978 CACTCAAACGCGTGAAGTACA 59.144 47.619 14.98 0.00 33.04 2.90
4338 4933 4.776322 CTGCATCCCGTCGGGCAA 62.776 66.667 26.42 10.12 43.94 4.52
4493 5088 1.805254 GCAGTGATCATGTGTGCCC 59.195 57.895 0.00 0.00 0.00 5.36
4497 5092 0.536724 TAGCCGCAGTGATCATGTGT 59.463 50.000 0.00 0.00 0.00 3.72
4504 5099 3.947196 TGAAATCAAATAGCCGCAGTGAT 59.053 39.130 0.00 0.00 0.00 3.06
4542 5137 6.669631 TGTCTCACAGTATCACCTAAGGATA 58.330 40.000 0.00 0.00 0.00 2.59
4575 5170 9.079833 GCGTCACTTAGTATTTTTACATGACTA 57.920 33.333 0.00 0.00 33.42 2.59
4623 5258 1.586422 GTGTCAGAGCTTGCACTGAA 58.414 50.000 20.63 10.88 43.29 3.02
4636 5271 2.926200 CCTTTGCTGATCTACGTGTCAG 59.074 50.000 17.78 17.78 43.62 3.51
4772 5417 0.618458 AAACATCGCCAGGAAGCCTA 59.382 50.000 0.00 0.00 29.64 3.93
4775 5420 3.782889 AAATAAACATCGCCAGGAAGC 57.217 42.857 0.00 0.00 0.00 3.86
4779 5424 3.315191 CCCACTAAATAAACATCGCCAGG 59.685 47.826 0.00 0.00 0.00 4.45
4844 5489 6.709281 ACTGAGCCAATATCATATCTTGAGG 58.291 40.000 0.00 0.00 37.89 3.86
4854 5499 6.100279 ACCTCTGAAATACTGAGCCAATATCA 59.900 38.462 0.00 0.00 41.28 2.15
4858 5503 4.521146 CACCTCTGAAATACTGAGCCAAT 58.479 43.478 0.00 0.00 41.28 3.16
4860 5505 2.355108 GCACCTCTGAAATACTGAGCCA 60.355 50.000 0.00 0.00 41.28 4.75
4888 5533 3.595173 TGCACGCATACACACTCTATTT 58.405 40.909 0.00 0.00 0.00 1.40
4889 5534 3.245518 TGCACGCATACACACTCTATT 57.754 42.857 0.00 0.00 0.00 1.73
4894 5539 1.464608 GTGAATGCACGCATACACACT 59.535 47.619 19.76 1.83 35.31 3.55
4925 5570 8.476925 CGTTGACGCGCATATAAATACATATAT 58.523 33.333 5.73 0.00 0.00 0.86
4929 5574 4.143200 CCGTTGACGCGCATATAAATACAT 60.143 41.667 5.73 0.00 38.18 2.29
4932 5577 3.382855 ACCGTTGACGCGCATATAAATA 58.617 40.909 5.73 0.00 38.18 1.40
4969 5614 7.166691 TCTAGGCACTCGTATCTTACTTTTT 57.833 36.000 0.00 0.00 41.75 1.94
4981 5627 8.235359 ACTTACTATTTAATCTAGGCACTCGT 57.765 34.615 0.00 0.00 41.75 4.18
5010 5656 9.946165 GAGGTAATCTTTCTTTTCGAAGAAAAA 57.054 29.630 12.17 1.67 45.08 1.94
5015 5662 5.446073 GCCGAGGTAATCTTTCTTTTCGAAG 60.446 44.000 0.00 0.00 32.21 3.79
5017 5664 3.930848 GCCGAGGTAATCTTTCTTTTCGA 59.069 43.478 0.00 0.00 0.00 3.71
5153 5804 9.128404 ACGGTCTAATAATAAGATGTGTGTAGA 57.872 33.333 0.00 0.00 0.00 2.59
5163 5814 7.929785 GGTTTGGATGACGGTCTAATAATAAGA 59.070 37.037 9.88 0.00 0.00 2.10
5165 5816 7.566569 TGGTTTGGATGACGGTCTAATAATAA 58.433 34.615 9.88 0.00 0.00 1.40
5186 5837 4.948621 AGTACGAGCTATGTAGAACTGGTT 59.051 41.667 0.00 0.00 0.00 3.67
5190 5841 8.098286 AGATGATAGTACGAGCTATGTAGAACT 58.902 37.037 7.90 0.00 32.32 3.01
5197 5848 4.944317 TGGGAGATGATAGTACGAGCTATG 59.056 45.833 7.90 0.00 32.32 2.23
5198 5849 4.944930 GTGGGAGATGATAGTACGAGCTAT 59.055 45.833 0.00 0.00 34.64 2.97
5213 5864 0.928505 TGGATGCAATGGTGGGAGAT 59.071 50.000 0.00 0.00 0.00 2.75
5368 6020 7.505258 AGTTTGTGCATTACTTTGGGTTATTT 58.495 30.769 0.00 0.00 0.00 1.40
5373 6025 3.320826 GGAGTTTGTGCATTACTTTGGGT 59.679 43.478 0.00 0.00 0.00 4.51
5401 6053 6.262273 CCCACTCAATATTGCGGTACTAATTT 59.738 38.462 10.76 0.00 0.00 1.82
5420 6072 1.146263 CCTCCATAACGCCCCACTC 59.854 63.158 0.00 0.00 0.00 3.51
5421 6073 1.306654 TCCTCCATAACGCCCCACT 60.307 57.895 0.00 0.00 0.00 4.00
5422 6074 1.153229 GTCCTCCATAACGCCCCAC 60.153 63.158 0.00 0.00 0.00 4.61
5423 6075 2.727392 CGTCCTCCATAACGCCCCA 61.727 63.158 0.00 0.00 31.48 4.96
5424 6076 2.108362 CGTCCTCCATAACGCCCC 59.892 66.667 0.00 0.00 31.48 5.80
5425 6077 3.213264 TCGTCCTCCATAACGCCC 58.787 61.111 0.00 0.00 38.72 6.13


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.