Multiple sequence alignment - TraesCS5A01G232800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G232800 chr5A 100.000 5613 0 0 1 5613 448113984 448108372 0.000000e+00 10366
1 TraesCS5A01G232800 chr5D 90.126 4142 228 81 129 4143 344432011 344427924 0.000000e+00 5216
2 TraesCS5A01G232800 chr5D 89.951 617 47 12 4269 4878 344427755 344427147 0.000000e+00 782
3 TraesCS5A01G232800 chr5D 81.776 642 72 24 4908 5527 344427020 344426402 3.910000e-136 496
4 TraesCS5A01G232800 chr5B 93.466 2066 99 29 2115 4155 407637403 407639457 0.000000e+00 3035
5 TraesCS5A01G232800 chr5B 85.758 1629 99 46 269 1790 407634045 407635647 0.000000e+00 1600
6 TraesCS5A01G232800 chr5B 90.863 591 39 10 4269 4856 407639729 407640307 0.000000e+00 778
7 TraesCS5A01G232800 chr5B 89.883 257 19 5 1841 2092 407635658 407635912 1.950000e-84 324
8 TraesCS5A01G232800 chr5B 84.123 359 26 19 5194 5527 407642473 407642825 9.070000e-83 318
9 TraesCS5A01G232800 chr3D 94.681 94 3 2 4138 4231 192058753 192058844 1.630000e-30 145
10 TraesCS5A01G232800 chrUn 94.624 93 4 1 4141 4233 163394435 163394526 5.860000e-30 143
11 TraesCS5A01G232800 chrUn 94.624 93 4 1 4141 4233 325472447 325472538 5.860000e-30 143
12 TraesCS5A01G232800 chrUn 94.624 93 4 1 4141 4233 384522697 384522788 5.860000e-30 143
13 TraesCS5A01G232800 chrUn 94.624 93 4 1 4141 4233 386040334 386040243 5.860000e-30 143
14 TraesCS5A01G232800 chrUn 89.623 106 9 2 4129 4233 119047530 119047634 3.530000e-27 134
15 TraesCS5A01G232800 chr4B 93.684 95 5 1 4140 4234 607437420 607437513 2.110000e-29 141
16 TraesCS5A01G232800 chr6B 91.176 102 6 3 4142 4243 91307401 91307303 9.810000e-28 135
17 TraesCS5A01G232800 chr1B 87.288 118 8 7 4142 4259 61100147 61100037 1.640000e-25 128


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G232800 chr5A 448108372 448113984 5612 True 10366.000000 10366 100.000000 1 5613 1 chr5A.!!$R1 5612
1 TraesCS5A01G232800 chr5D 344426402 344432011 5609 True 2164.666667 5216 87.284333 129 5527 3 chr5D.!!$R1 5398
2 TraesCS5A01G232800 chr5B 407634045 407642825 8780 False 1211.000000 3035 88.818600 269 5527 5 chr5B.!!$F1 5258

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
286 288 0.033366 CATGGCATGGCATCCACATG 59.967 55.0 30.20 16.89 46.45 3.21 F
538 546 0.319900 TCACCTGAACTCAAGCGCTC 60.320 55.0 12.06 0.00 0.00 5.03 F
963 1018 0.517316 ATCTGTGGTTTTTCGCGAGC 59.483 50.0 9.59 0.00 0.00 5.03 F
2554 4217 0.402121 AAGAAGGGAAGAGGCGCTTT 59.598 50.0 7.64 0.00 40.58 3.51 F
2875 4538 0.038021 TGATAGGCAACAGCAAGGCA 59.962 50.0 0.00 0.00 41.41 4.75 F
4157 5824 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.0 0.00 0.00 0.00 4.00 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1462 1557 0.709467 CACATCGCCGCACAAAATTG 59.291 50.000 0.00 0.0 0.00 2.32 R
1972 2114 1.134037 TCCAACTGTTACGCAAACCCT 60.134 47.619 0.00 0.0 37.27 4.34 R
2632 4295 0.940991 CAAGCCTTGCAAAACGCCTC 60.941 55.000 0.00 0.0 41.33 4.70 R
4323 6152 0.245539 TTCGGCCTACAGGAAAGACG 59.754 55.000 0.00 0.0 37.39 4.18 R
4519 6348 0.454600 CAGGCATTGTGCTCATGGTC 59.545 55.000 1.64 0.0 44.28 4.02 R
5317 9216 0.460311 CCGGCGAGGTCTTGACTATT 59.540 55.000 9.30 0.0 34.51 1.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
58 59 5.774498 AAAAGATGAGGTTGAGTTGGTTC 57.226 39.130 0.00 0.00 0.00 3.62
59 60 3.045601 AGATGAGGTTGAGTTGGTTCG 57.954 47.619 0.00 0.00 0.00 3.95
60 61 2.368875 AGATGAGGTTGAGTTGGTTCGT 59.631 45.455 0.00 0.00 0.00 3.85
61 62 1.948104 TGAGGTTGAGTTGGTTCGTG 58.052 50.000 0.00 0.00 0.00 4.35
62 63 1.226746 GAGGTTGAGTTGGTTCGTGG 58.773 55.000 0.00 0.00 0.00 4.94
63 64 0.544697 AGGTTGAGTTGGTTCGTGGT 59.455 50.000 0.00 0.00 0.00 4.16
64 65 1.064979 AGGTTGAGTTGGTTCGTGGTT 60.065 47.619 0.00 0.00 0.00 3.67
65 66 2.171027 AGGTTGAGTTGGTTCGTGGTTA 59.829 45.455 0.00 0.00 0.00 2.85
66 67 2.944349 GGTTGAGTTGGTTCGTGGTTAA 59.056 45.455 0.00 0.00 0.00 2.01
67 68 3.002965 GGTTGAGTTGGTTCGTGGTTAAG 59.997 47.826 0.00 0.00 0.00 1.85
68 69 3.547054 TGAGTTGGTTCGTGGTTAAGT 57.453 42.857 0.00 0.00 0.00 2.24
69 70 3.460103 TGAGTTGGTTCGTGGTTAAGTC 58.540 45.455 0.00 0.00 0.00 3.01
70 71 3.133362 TGAGTTGGTTCGTGGTTAAGTCT 59.867 43.478 0.00 0.00 0.00 3.24
71 72 3.463944 AGTTGGTTCGTGGTTAAGTCTG 58.536 45.455 0.00 0.00 0.00 3.51
72 73 3.118519 AGTTGGTTCGTGGTTAAGTCTGT 60.119 43.478 0.00 0.00 0.00 3.41
73 74 2.828877 TGGTTCGTGGTTAAGTCTGTG 58.171 47.619 0.00 0.00 0.00 3.66
74 75 2.140717 GGTTCGTGGTTAAGTCTGTGG 58.859 52.381 0.00 0.00 0.00 4.17
75 76 2.140717 GTTCGTGGTTAAGTCTGTGGG 58.859 52.381 0.00 0.00 0.00 4.61
76 77 1.416243 TCGTGGTTAAGTCTGTGGGT 58.584 50.000 0.00 0.00 0.00 4.51
77 78 1.764134 TCGTGGTTAAGTCTGTGGGTT 59.236 47.619 0.00 0.00 0.00 4.11
78 79 2.140717 CGTGGTTAAGTCTGTGGGTTC 58.859 52.381 0.00 0.00 0.00 3.62
79 80 2.224209 CGTGGTTAAGTCTGTGGGTTCT 60.224 50.000 0.00 0.00 0.00 3.01
80 81 3.139077 GTGGTTAAGTCTGTGGGTTCTG 58.861 50.000 0.00 0.00 0.00 3.02
81 82 2.152016 GGTTAAGTCTGTGGGTTCTGC 58.848 52.381 0.00 0.00 0.00 4.26
82 83 2.224548 GGTTAAGTCTGTGGGTTCTGCT 60.225 50.000 0.00 0.00 0.00 4.24
83 84 3.007614 GGTTAAGTCTGTGGGTTCTGCTA 59.992 47.826 0.00 0.00 0.00 3.49
84 85 4.246458 GTTAAGTCTGTGGGTTCTGCTAG 58.754 47.826 0.00 0.00 0.00 3.42
85 86 2.310779 AGTCTGTGGGTTCTGCTAGA 57.689 50.000 0.00 0.00 0.00 2.43
86 87 2.826488 AGTCTGTGGGTTCTGCTAGAT 58.174 47.619 0.00 0.00 0.00 1.98
87 88 3.982516 AGTCTGTGGGTTCTGCTAGATA 58.017 45.455 0.00 0.00 0.00 1.98
88 89 4.353777 AGTCTGTGGGTTCTGCTAGATAA 58.646 43.478 0.00 0.00 0.00 1.75
89 90 4.777896 AGTCTGTGGGTTCTGCTAGATAAA 59.222 41.667 0.00 0.00 0.00 1.40
90 91 5.248477 AGTCTGTGGGTTCTGCTAGATAAAA 59.752 40.000 0.00 0.00 0.00 1.52
91 92 5.938125 GTCTGTGGGTTCTGCTAGATAAAAA 59.062 40.000 0.00 0.00 0.00 1.94
116 117 8.834004 AAAGTTTAATCCTAAAAGGTATCCCC 57.166 34.615 0.00 0.00 36.53 4.81
118 119 7.813331 AGTTTAATCCTAAAAGGTATCCCCTC 58.187 38.462 0.00 0.00 45.47 4.30
119 120 7.632164 AGTTTAATCCTAAAAGGTATCCCCTCT 59.368 37.037 0.00 0.00 45.47 3.69
120 121 5.913946 AATCCTAAAAGGTATCCCCTCTG 57.086 43.478 0.00 0.00 45.47 3.35
121 122 4.363546 TCCTAAAAGGTATCCCCTCTGT 57.636 45.455 0.00 0.00 45.47 3.41
122 123 5.492565 TCCTAAAAGGTATCCCCTCTGTA 57.507 43.478 0.00 0.00 45.47 2.74
123 124 5.857134 TCCTAAAAGGTATCCCCTCTGTAA 58.143 41.667 0.00 0.00 45.47 2.41
124 125 6.458784 TCCTAAAAGGTATCCCCTCTGTAAT 58.541 40.000 0.00 0.00 45.47 1.89
125 126 6.912561 TCCTAAAAGGTATCCCCTCTGTAATT 59.087 38.462 0.00 0.00 45.47 1.40
126 127 7.407918 TCCTAAAAGGTATCCCCTCTGTAATTT 59.592 37.037 0.00 0.00 45.47 1.82
127 128 8.720537 CCTAAAAGGTATCCCCTCTGTAATTTA 58.279 37.037 0.00 0.00 45.47 1.40
138 139 8.887393 TCCCCTCTGTAATTTAATATAAGACCC 58.113 37.037 0.00 0.00 0.00 4.46
152 153 1.308998 AGACCCTTTTTGACACAGCG 58.691 50.000 0.00 0.00 0.00 5.18
227 228 7.971168 GTGTATGATAGATAGGACGAGGAATTG 59.029 40.741 0.00 0.00 0.00 2.32
240 241 6.814146 GGACGAGGAATTGTATTATGGAGATC 59.186 42.308 0.00 0.00 0.00 2.75
247 248 8.535335 GGAATTGTATTATGGAGATCTGCTAGA 58.465 37.037 15.82 1.40 0.00 2.43
250 251 7.695480 TGTATTATGGAGATCTGCTAGAGAC 57.305 40.000 15.82 8.54 31.75 3.36
254 255 1.604604 GAGATCTGCTAGAGACGCCT 58.395 55.000 0.00 0.00 31.75 5.52
256 257 1.133945 AGATCTGCTAGAGACGCCTGA 60.134 52.381 0.00 0.00 31.75 3.86
261 263 1.336887 TGCTAGAGACGCCTGAAACAC 60.337 52.381 0.00 0.00 0.00 3.32
265 267 3.027974 AGAGACGCCTGAAACACTAAC 57.972 47.619 0.00 0.00 0.00 2.34
286 288 0.033366 CATGGCATGGCATCCACATG 59.967 55.000 30.20 16.89 46.45 3.21
438 440 0.534203 TGCAACCCCGTTCTTCAGAC 60.534 55.000 0.00 0.00 0.00 3.51
499 507 0.467804 GCCAGAGCAAAACCCCAAAA 59.532 50.000 0.00 0.00 39.53 2.44
538 546 0.319900 TCACCTGAACTCAAGCGCTC 60.320 55.000 12.06 0.00 0.00 5.03
561 569 2.253513 CCAAAGTTGGTTCGCGGAT 58.746 52.632 6.13 0.00 43.43 4.18
569 577 1.353103 GGTTCGCGGATCAATGCTG 59.647 57.895 6.13 0.00 0.00 4.41
584 602 3.996150 ATGCTGGACAGAACAAAAGTG 57.004 42.857 3.00 0.00 0.00 3.16
585 603 1.405105 TGCTGGACAGAACAAAAGTGC 59.595 47.619 3.00 0.00 0.00 4.40
586 604 1.678101 GCTGGACAGAACAAAAGTGCT 59.322 47.619 3.00 0.00 0.00 4.40
587 605 2.287248 GCTGGACAGAACAAAAGTGCTC 60.287 50.000 3.00 0.00 0.00 4.26
588 606 2.945008 CTGGACAGAACAAAAGTGCTCA 59.055 45.455 0.00 0.00 0.00 4.26
590 608 3.316029 TGGACAGAACAAAAGTGCTCATG 59.684 43.478 0.00 0.00 0.00 3.07
592 610 4.320057 GGACAGAACAAAAGTGCTCATGAG 60.320 45.833 18.84 18.84 0.00 2.90
649 691 4.357947 GTCGTCGCTGCCACCTCA 62.358 66.667 0.00 0.00 0.00 3.86
673 723 3.802948 ACACGATACAGACTGGGATTC 57.197 47.619 7.51 0.00 0.00 2.52
704 754 4.636435 CCACACCCACCGACCCAC 62.636 72.222 0.00 0.00 0.00 4.61
705 755 4.636435 CACACCCACCGACCCACC 62.636 72.222 0.00 0.00 0.00 4.61
753 803 2.661866 GATTGGGATCGCGGTCCG 60.662 66.667 30.96 6.99 39.26 4.79
766 819 3.673484 GTCCGTCCGTCCGTCCAA 61.673 66.667 0.00 0.00 0.00 3.53
801 856 2.836187 CCCAAAACCCTCCCGTCCA 61.836 63.158 0.00 0.00 0.00 4.02
815 870 4.358841 TCCACCCCACCCAATGCG 62.359 66.667 0.00 0.00 0.00 4.73
817 872 2.600173 CACCCCACCCAATGCGTT 60.600 61.111 0.00 0.00 0.00 4.84
833 888 2.033236 TGCGTTTGTTCGTCTGATGAAC 60.033 45.455 27.72 27.72 42.81 3.18
858 913 1.421410 GGTAGTGCGCATTGAGGACG 61.421 60.000 15.91 0.00 35.03 4.79
873 928 2.365941 GAGGACGGGGAGAAGATTTAGG 59.634 54.545 0.00 0.00 0.00 2.69
888 943 2.579410 TTAGGGCAGAGTTTTGGGTC 57.421 50.000 0.00 0.00 0.00 4.46
904 959 2.940410 TGGGTCAGTCGAAAAACAGTTC 59.060 45.455 0.00 0.00 0.00 3.01
961 1016 5.365403 AATTAATCTGTGGTTTTTCGCGA 57.635 34.783 3.71 3.71 0.00 5.87
962 1017 2.969443 AATCTGTGGTTTTTCGCGAG 57.031 45.000 9.59 0.00 0.00 5.03
963 1018 0.517316 ATCTGTGGTTTTTCGCGAGC 59.483 50.000 9.59 0.00 0.00 5.03
981 1036 3.945285 CGAGCAGTACCATTATTTTGGGT 59.055 43.478 0.00 0.00 41.35 4.51
1029 1087 2.197324 GCCCCACCAACCAGTCAA 59.803 61.111 0.00 0.00 0.00 3.18
1462 1557 0.814457 AGGTGACTCGATCTGACTGC 59.186 55.000 0.00 0.00 32.90 4.40
1464 1559 1.067565 GGTGACTCGATCTGACTGCAA 60.068 52.381 0.00 0.00 0.00 4.08
1468 1563 4.153117 GTGACTCGATCTGACTGCAATTTT 59.847 41.667 0.00 0.00 0.00 1.82
1541 1643 0.678048 AGGACGGGTACTACGTGGTC 60.678 60.000 18.12 0.16 45.68 4.02
1586 1688 2.035783 GGGGAGGGCAAGTCAACC 59.964 66.667 0.00 0.00 0.00 3.77
1667 1793 4.023536 TCAGAGTTATTTTCGTTTGCACCC 60.024 41.667 0.00 0.00 0.00 4.61
1677 1803 1.400500 CGTTTGCACCCGGTTGATTAC 60.400 52.381 1.77 0.00 0.00 1.89
1702 1828 1.614903 TCTCCGTTAGAACAAAGCCGA 59.385 47.619 0.00 0.00 0.00 5.54
1703 1829 1.993370 CTCCGTTAGAACAAAGCCGAG 59.007 52.381 0.00 0.00 0.00 4.63
1704 1830 1.342174 TCCGTTAGAACAAAGCCGAGT 59.658 47.619 0.00 0.00 0.00 4.18
1705 1831 2.140717 CCGTTAGAACAAAGCCGAGTT 58.859 47.619 0.00 0.00 0.00 3.01
1706 1832 3.005684 TCCGTTAGAACAAAGCCGAGTTA 59.994 43.478 0.00 0.00 0.00 2.24
1712 1843 5.485662 AGAACAAAGCCGAGTTAATATGC 57.514 39.130 0.00 0.00 0.00 3.14
1741 1872 3.120321 TGTAGTTTGGCTGTCAACGAT 57.880 42.857 0.00 0.00 34.67 3.73
1743 1874 2.254546 AGTTTGGCTGTCAACGATGA 57.745 45.000 0.00 0.00 34.67 2.92
1748 1879 3.443099 TGGCTGTCAACGATGAGATAG 57.557 47.619 0.00 0.00 35.88 2.08
1756 1887 1.114627 ACGATGAGATAGCCTGCACA 58.885 50.000 0.00 0.00 0.00 4.57
1758 1889 2.133553 CGATGAGATAGCCTGCACAAG 58.866 52.381 0.00 0.00 0.00 3.16
1782 1913 6.375455 AGGTTCATTAGTGCTTGTCAATTAGG 59.625 38.462 0.00 0.00 0.00 2.69
1793 1924 3.670625 TGTCAATTAGGACAAAGTCGGG 58.329 45.455 0.00 0.00 44.34 5.14
1797 1928 5.414765 GTCAATTAGGACAAAGTCGGGAATT 59.585 40.000 0.00 0.00 37.73 2.17
1814 1946 5.053811 GGGAATTTGTGGTTTGTTGTAAGG 58.946 41.667 0.00 0.00 0.00 2.69
1818 1950 5.923733 TTTGTGGTTTGTTGTAAGGATGT 57.076 34.783 0.00 0.00 0.00 3.06
1824 1956 5.821470 TGGTTTGTTGTAAGGATGTCGTTTA 59.179 36.000 0.00 0.00 0.00 2.01
1832 1964 7.972832 TGTAAGGATGTCGTTTAAGTTGATT 57.027 32.000 0.00 0.00 0.00 2.57
1839 1971 7.961283 GGATGTCGTTTAAGTTGATTAAAGTCC 59.039 37.037 0.00 0.00 42.58 3.85
1883 2025 5.358160 GGGACAACATTGGAAGGATTAGAAG 59.642 44.000 0.00 0.00 0.00 2.85
1884 2026 5.946377 GGACAACATTGGAAGGATTAGAAGT 59.054 40.000 0.00 0.00 0.00 3.01
1932 2074 2.789409 AGTATTCTGTTGCTGTCCCC 57.211 50.000 0.00 0.00 0.00 4.81
1948 2090 5.681695 GCTGTCCCCTAGTTAGTAACACATC 60.682 48.000 15.28 2.17 0.00 3.06
1950 2092 6.734532 TGTCCCCTAGTTAGTAACACATCTA 58.265 40.000 15.28 0.00 0.00 1.98
1951 2093 6.604795 TGTCCCCTAGTTAGTAACACATCTAC 59.395 42.308 15.28 7.08 0.00 2.59
1960 2102 8.705594 AGTTAGTAACACATCTACATATTGGCT 58.294 33.333 15.28 0.00 0.00 4.75
1972 2114 3.135712 ACATATTGGCTATCACGGGTTCA 59.864 43.478 0.00 0.00 0.00 3.18
1975 2117 1.146263 GGCTATCACGGGTTCAGGG 59.854 63.158 0.00 0.00 0.00 4.45
1994 2136 2.351350 GGGTTTGCGTAACAGTTGGATG 60.351 50.000 0.00 0.00 38.55 3.51
2027 2169 9.729023 TTTATGAAGTTGTGTTGACATAAACAG 57.271 29.630 0.00 0.00 40.60 3.16
2028 2170 6.993786 TGAAGTTGTGTTGACATAAACAGA 57.006 33.333 12.30 0.00 40.60 3.41
2030 2172 6.372937 TGAAGTTGTGTTGACATAAACAGACA 59.627 34.615 12.30 7.94 40.60 3.41
2034 2176 6.838198 TGTGTTGACATAAACAGACAGTAC 57.162 37.500 0.00 0.00 40.60 2.73
2076 2221 8.978472 AGTGCTTATGGTAGAACTTCTGTATAA 58.022 33.333 1.17 3.71 29.22 0.98
2428 4091 3.606595 ATGACTGGAGATATCCATGCG 57.393 47.619 10.06 0.68 39.34 4.73
2554 4217 0.402121 AAGAAGGGAAGAGGCGCTTT 59.598 50.000 7.64 0.00 40.58 3.51
2623 4286 1.227263 CCCCGATGAGCTAACACCG 60.227 63.158 0.00 0.00 0.00 4.94
2632 4295 2.288825 TGAGCTAACACCGGAAGAAGTG 60.289 50.000 9.46 0.00 39.93 3.16
2749 4412 1.001293 CAAGGCCCTGAAGAAAAAGGC 59.999 52.381 0.00 0.00 43.09 4.35
2875 4538 0.038021 TGATAGGCAACAGCAAGGCA 59.962 50.000 0.00 0.00 41.41 4.75
2956 4619 3.515602 GATGCTATTCATCCCACCCTT 57.484 47.619 0.00 0.00 44.54 3.95
2974 4637 4.202567 ACCCTTATGCAAACTCTTGAAGGA 60.203 41.667 0.00 0.00 36.69 3.36
3076 4739 1.231928 GTTGGTTGGGAAGGGTGGT 59.768 57.895 0.00 0.00 0.00 4.16
3499 5162 8.524487 GTTAGTTCTCTTCTCTTGTCTGGATTA 58.476 37.037 0.00 0.00 0.00 1.75
3609 5273 9.295825 TCTCTTTTGGAGAAATATTTAACTGCA 57.704 29.630 0.00 3.99 46.85 4.41
3615 5279 9.859427 TTGGAGAAATATTTAACTGCAAATCTG 57.141 29.630 16.46 0.00 37.65 2.90
3642 5307 6.128035 TGTCCATTTCATATGTTTGTCTTCCG 60.128 38.462 1.90 0.00 0.00 4.30
3643 5308 5.356751 TCCATTTCATATGTTTGTCTTCCGG 59.643 40.000 1.90 0.00 0.00 5.14
3647 5312 2.851263 TATGTTTGTCTTCCGGTGCT 57.149 45.000 0.00 0.00 0.00 4.40
3692 5358 8.328864 GTTTCTGTACTTGTGACTGTTCTTTAG 58.671 37.037 0.00 0.00 0.00 1.85
3706 5372 6.929606 ACTGTTCTTTAGTGTCCAACATAGAC 59.070 38.462 0.00 0.00 34.72 2.59
3713 5379 0.107165 GTCCAACATAGACCAGCCCC 60.107 60.000 0.00 0.00 0.00 5.80
3714 5380 0.253160 TCCAACATAGACCAGCCCCT 60.253 55.000 0.00 0.00 0.00 4.79
3715 5381 0.625849 CCAACATAGACCAGCCCCTT 59.374 55.000 0.00 0.00 0.00 3.95
3762 5428 4.216257 TGCCAGACTTTTCAGCTTATCAAC 59.784 41.667 0.00 0.00 0.00 3.18
3796 5462 2.016318 TCACTGCACCAAACAGTTCTG 58.984 47.619 0.00 0.00 46.01 3.02
3800 5466 2.016318 TGCACCAAACAGTTCTGACAG 58.984 47.619 6.83 0.00 0.00 3.51
3801 5467 2.017049 GCACCAAACAGTTCTGACAGT 58.983 47.619 6.83 0.00 0.00 3.55
3821 5488 2.599032 TGCCCATGCATCCCTCTG 59.401 61.111 0.00 0.00 44.23 3.35
3837 5504 6.252599 TCCCTCTGCATTTCACTAATACAT 57.747 37.500 0.00 0.00 0.00 2.29
3840 5507 8.439971 TCCCTCTGCATTTCACTAATACATTAT 58.560 33.333 0.00 0.00 0.00 1.28
3861 5528 3.266510 TGCCTAGCGAGTTGATTTCAT 57.733 42.857 0.00 0.00 0.00 2.57
3906 5573 9.748708 CTTCAATTTAAGAACATTTGAAGTCCA 57.251 29.630 13.03 0.00 43.98 4.02
3930 5597 9.329913 CCAAATTTTACAGAATCGAACTAGTTG 57.670 33.333 14.14 5.81 0.00 3.16
3931 5598 8.840867 CAAATTTTACAGAATCGAACTAGTTGC 58.159 33.333 14.14 4.02 0.00 4.17
3936 5603 5.169295 ACAGAATCGAACTAGTTGCCTAAC 58.831 41.667 14.14 0.00 37.06 2.34
3943 5610 5.884232 TCGAACTAGTTGCCTAACTCTATCA 59.116 40.000 14.14 0.00 43.53 2.15
3946 5613 7.425224 AACTAGTTGCCTAACTCTATCATGT 57.575 36.000 7.48 0.00 43.53 3.21
3952 5619 8.486210 AGTTGCCTAACTCTATCATGTCATTTA 58.514 33.333 0.00 0.00 43.53 1.40
4127 5794 5.163195 ACTCTGAACAGGTATTTCCTTGTGT 60.163 40.000 1.93 0.00 45.67 3.72
4128 5795 5.690865 TCTGAACAGGTATTTCCTTGTGTT 58.309 37.500 1.93 0.00 45.67 3.32
4129 5796 5.763204 TCTGAACAGGTATTTCCTTGTGTTC 59.237 40.000 6.15 6.15 45.67 3.18
4136 5803 6.004574 AGGTATTTCCTTGTGTTCTTCTTCC 58.995 40.000 0.00 0.00 45.67 3.46
4137 5804 5.106673 GGTATTTCCTTGTGTTCTTCTTCCG 60.107 44.000 0.00 0.00 0.00 4.30
4155 5822 1.895966 GTTGTACTCCCTCCGTCCC 59.104 63.158 0.00 0.00 0.00 4.46
4156 5823 0.901580 GTTGTACTCCCTCCGTCCCA 60.902 60.000 0.00 0.00 0.00 4.37
4157 5824 0.042131 TTGTACTCCCTCCGTCCCAT 59.958 55.000 0.00 0.00 0.00 4.00
4162 5829 3.562108 ACTCCCTCCGTCCCATAATAT 57.438 47.619 0.00 0.00 0.00 1.28
4163 5830 4.687262 ACTCCCTCCGTCCCATAATATA 57.313 45.455 0.00 0.00 0.00 0.86
4164 5831 5.019657 ACTCCCTCCGTCCCATAATATAA 57.980 43.478 0.00 0.00 0.00 0.98
4166 5833 5.222484 ACTCCCTCCGTCCCATAATATAAGA 60.222 44.000 0.00 0.00 0.00 2.10
4167 5834 5.850278 TCCCTCCGTCCCATAATATAAGAT 58.150 41.667 0.00 0.00 0.00 2.40
4169 5836 5.425539 CCCTCCGTCCCATAATATAAGATGT 59.574 44.000 0.00 0.00 0.00 3.06
4170 5837 6.070194 CCCTCCGTCCCATAATATAAGATGTT 60.070 42.308 0.00 0.00 0.00 2.71
4172 5839 7.311092 TCCGTCCCATAATATAAGATGTTGT 57.689 36.000 0.00 0.00 0.00 3.32
4173 5840 7.741785 TCCGTCCCATAATATAAGATGTTGTT 58.258 34.615 0.00 0.00 0.00 2.83
4174 5841 8.215050 TCCGTCCCATAATATAAGATGTTGTTT 58.785 33.333 0.00 0.00 0.00 2.83
4189 5856 8.677148 AGATGTTGTTTTGACACTACATTAGT 57.323 30.769 3.08 0.00 41.38 2.24
4239 5937 7.559170 GGACAGAGGGAGTAATTACTTACTGTA 59.441 40.741 27.27 0.00 45.97 2.74
4292 6121 0.107017 AACACTCTGTGCCTGCAGTT 60.107 50.000 13.81 0.00 36.98 3.16
4306 6135 4.098501 GCCTGCAGTTATAAGATTTTGCCT 59.901 41.667 13.81 0.00 0.00 4.75
4315 6144 3.655276 AAGATTTTGCCTGCTGACTTG 57.345 42.857 0.00 0.00 0.00 3.16
4317 6146 2.961062 AGATTTTGCCTGCTGACTTGTT 59.039 40.909 0.00 0.00 0.00 2.83
4321 6150 4.935352 TTTGCCTGCTGACTTGTTTATT 57.065 36.364 0.00 0.00 0.00 1.40
4322 6151 6.398234 TTTTGCCTGCTGACTTGTTTATTA 57.602 33.333 0.00 0.00 0.00 0.98
4323 6152 5.371115 TTGCCTGCTGACTTGTTTATTAC 57.629 39.130 0.00 0.00 0.00 1.89
4324 6153 3.435327 TGCCTGCTGACTTGTTTATTACG 59.565 43.478 0.00 0.00 0.00 3.18
4325 6154 3.435671 GCCTGCTGACTTGTTTATTACGT 59.564 43.478 0.00 0.00 0.00 3.57
4326 6155 4.435651 GCCTGCTGACTTGTTTATTACGTC 60.436 45.833 0.00 0.00 0.00 4.34
4348 6177 0.398696 TCCTGTAGGCCGAAAAGCAA 59.601 50.000 0.00 0.00 34.44 3.91
4351 6180 2.231235 CCTGTAGGCCGAAAAGCAAATT 59.769 45.455 0.00 0.00 0.00 1.82
4621 6450 0.997932 GTCTGTCATGAGCTTCGCTG 59.002 55.000 0.00 0.00 39.88 5.18
4672 6501 1.265365 TGTTGCGCAATTGAATCGACA 59.735 42.857 27.79 14.03 0.00 4.35
4700 6529 4.821260 GCAGTTTCAATTTTGGGGACATTT 59.179 37.500 0.00 0.00 42.32 2.32
4717 6546 6.325596 GGACATTTCCTGAAGCAGAATAAAC 58.674 40.000 0.00 0.00 39.13 2.01
4729 6558 4.024048 AGCAGAATAAACGAATAATGGCCG 60.024 41.667 0.00 0.00 0.00 6.13
4734 6563 0.586319 AACGAATAATGGCCGCATCG 59.414 50.000 12.69 12.69 36.45 3.84
4777 6606 4.774124 GGGGGTAGTACATTTCAGTTACC 58.226 47.826 2.06 0.00 0.00 2.85
4798 6627 4.060900 CCTGATGGATGTAGATTTGGTCG 58.939 47.826 0.00 0.00 34.57 4.79
4826 6655 2.030717 AGCGTCTGTCTGTACTCTGTTG 60.031 50.000 0.00 0.00 0.00 3.33
4839 6668 4.706842 ACTCTGTTGGTGTTCCTTATGT 57.293 40.909 0.00 0.00 34.23 2.29
4858 6717 9.079833 CCTTATGTTTTGATGTTCAGCTTTATG 57.920 33.333 0.00 0.00 0.00 1.90
4887 8688 4.618927 GCTTTGCTGGTTCTATTTCATGCA 60.619 41.667 0.00 0.00 0.00 3.96
4913 8714 6.927933 ATTTTCTTTGCGTTGCTACATAAC 57.072 33.333 0.00 0.00 0.00 1.89
4927 8759 0.469917 CATAACGATGGGCTGGGTCT 59.530 55.000 0.00 0.00 0.00 3.85
4950 8782 0.662970 GCAAGCGACGGCAAATCAAA 60.663 50.000 0.00 0.00 43.41 2.69
4957 8789 2.656422 CGACGGCAAATCAAATGTTGTC 59.344 45.455 0.00 0.00 0.00 3.18
4958 8790 3.637432 GACGGCAAATCAAATGTTGTCA 58.363 40.909 0.00 0.00 29.64 3.58
4959 8791 4.236935 GACGGCAAATCAAATGTTGTCAT 58.763 39.130 0.00 0.00 35.59 3.06
5012 8845 2.202797 CCAGACGGCGACATGGAG 60.203 66.667 16.62 0.00 34.60 3.86
5013 8846 2.573869 CAGACGGCGACATGGAGT 59.426 61.111 16.62 0.00 0.00 3.85
5027 8860 1.891919 GGAGTTGTCACGCTGCCAA 60.892 57.895 0.00 0.00 0.00 4.52
5031 8864 1.408702 AGTTGTCACGCTGCCAATTTT 59.591 42.857 0.00 0.00 0.00 1.82
5032 8865 2.159114 AGTTGTCACGCTGCCAATTTTT 60.159 40.909 0.00 0.00 0.00 1.94
5038 8871 0.161446 CGCTGCCAATTTTTGCGTTC 59.839 50.000 0.00 0.00 41.45 3.95
5040 8873 1.486439 CTGCCAATTTTTGCGTTCGT 58.514 45.000 0.00 0.00 0.00 3.85
5047 8880 1.167781 TTTTTGCGTTCGTCTCCCCC 61.168 55.000 0.00 0.00 0.00 5.40
5073 8906 4.568072 AAAACCAGTTTGCTTTTCCCTT 57.432 36.364 0.00 0.00 32.36 3.95
5076 8909 3.103742 ACCAGTTTGCTTTTCCCTTCAA 58.896 40.909 0.00 0.00 0.00 2.69
5077 8910 3.118775 ACCAGTTTGCTTTTCCCTTCAAC 60.119 43.478 0.00 0.00 0.00 3.18
5096 8929 6.988622 TCAACGACTCCTTTTCTTTTTACA 57.011 33.333 0.00 0.00 0.00 2.41
5098 8931 7.245604 TCAACGACTCCTTTTCTTTTTACAAC 58.754 34.615 0.00 0.00 0.00 3.32
5101 8934 8.496707 ACGACTCCTTTTCTTTTTACAACTTA 57.503 30.769 0.00 0.00 0.00 2.24
5102 8935 8.393366 ACGACTCCTTTTCTTTTTACAACTTAC 58.607 33.333 0.00 0.00 0.00 2.34
5130 8963 3.788227 TTGCTTGGTAGGACTGATGTT 57.212 42.857 0.00 0.00 0.00 2.71
5134 8967 4.160439 TGCTTGGTAGGACTGATGTTCTAG 59.840 45.833 0.00 0.00 35.11 2.43
5143 9004 6.183347 AGGACTGATGTTCTAGAAAAATGGG 58.817 40.000 6.78 0.00 28.24 4.00
5148 9009 9.362151 ACTGATGTTCTAGAAAAATGGGTTAAA 57.638 29.630 6.78 0.00 0.00 1.52
5164 9025 8.615878 ATGGGTTAAATTAAAAAGGTCTTTGC 57.384 30.769 0.00 0.00 32.36 3.68
5165 9026 7.797062 TGGGTTAAATTAAAAAGGTCTTTGCT 58.203 30.769 0.00 0.00 32.36 3.91
5166 9027 7.929245 TGGGTTAAATTAAAAAGGTCTTTGCTC 59.071 33.333 0.00 0.00 32.36 4.26
5167 9028 8.148351 GGGTTAAATTAAAAAGGTCTTTGCTCT 58.852 33.333 0.00 0.00 32.36 4.09
5176 9037 8.932945 AAAAAGGTCTTTGCTCTAAAAGAAAG 57.067 30.769 1.19 0.00 45.30 2.62
5177 9038 7.881775 AAAGGTCTTTGCTCTAAAAGAAAGA 57.118 32.000 1.19 0.00 45.30 2.52
5178 9039 7.881775 AAGGTCTTTGCTCTAAAAGAAAGAA 57.118 32.000 1.19 0.00 45.30 2.52
5179 9040 7.881775 AGGTCTTTGCTCTAAAAGAAAGAAA 57.118 32.000 1.19 0.00 45.30 2.52
5180 9041 7.935520 AGGTCTTTGCTCTAAAAGAAAGAAAG 58.064 34.615 1.19 0.00 45.30 2.62
5181 9042 7.775561 AGGTCTTTGCTCTAAAAGAAAGAAAGA 59.224 33.333 1.19 0.00 45.30 2.52
5182 9043 8.406297 GGTCTTTGCTCTAAAAGAAAGAAAGAA 58.594 33.333 1.19 0.00 45.30 2.52
5183 9044 9.788960 GTCTTTGCTCTAAAAGAAAGAAAGAAA 57.211 29.630 1.19 0.00 45.30 2.52
5225 9086 5.252586 AGGATGAAATATAGCAGCCACAT 57.747 39.130 12.76 0.00 42.80 3.21
5281 9155 2.046314 CCCGAAGTCAATGGCCGT 60.046 61.111 0.00 0.00 0.00 5.68
5315 9214 4.681978 GCACGGGAAGCCGTCAGT 62.682 66.667 0.00 0.00 45.00 3.41
5316 9215 2.432628 CACGGGAAGCCGTCAGTC 60.433 66.667 0.00 0.00 45.00 3.51
5317 9216 2.915659 ACGGGAAGCCGTCAGTCA 60.916 61.111 0.00 0.00 43.22 3.41
5409 9308 2.356553 TTTCCTCGAACGCCACCG 60.357 61.111 0.00 0.00 41.14 4.94
5437 9336 1.745489 CAAACCCTACCGCTCAGCC 60.745 63.158 0.00 0.00 0.00 4.85
5476 9380 1.792118 GCCACTTCACCGGTCAAACC 61.792 60.000 2.59 0.00 34.05 3.27
5491 9395 4.752879 ACCCGACGACATTGCCGG 62.753 66.667 0.00 0.00 41.47 6.13
5576 9480 4.476410 CGTAGGCGCTGCGAGACA 62.476 66.667 28.07 3.97 41.80 3.41
5577 9481 2.881352 GTAGGCGCTGCGAGACAC 60.881 66.667 28.07 12.99 0.00 3.67
5578 9482 4.476410 TAGGCGCTGCGAGACACG 62.476 66.667 28.07 0.00 45.66 4.49
5582 9486 4.700365 CGCTGCGAGACACGGTCA 62.700 66.667 18.66 0.00 42.83 4.02
5583 9487 2.807045 GCTGCGAGACACGGTCAG 60.807 66.667 6.78 0.00 42.83 3.51
5584 9488 2.954611 CTGCGAGACACGGTCAGA 59.045 61.111 6.78 0.00 42.83 3.27
5585 9489 1.154131 CTGCGAGACACGGTCAGAG 60.154 63.158 6.78 0.00 42.83 3.35
5586 9490 2.505118 GCGAGACACGGTCAGAGC 60.505 66.667 6.78 0.00 42.83 4.09
5587 9491 2.954611 CGAGACACGGTCAGAGCA 59.045 61.111 0.00 0.00 38.46 4.26
5588 9492 1.442857 CGAGACACGGTCAGAGCAC 60.443 63.158 0.00 0.00 38.46 4.40
5589 9493 1.660355 GAGACACGGTCAGAGCACA 59.340 57.895 0.00 0.00 34.60 4.57
5590 9494 0.664767 GAGACACGGTCAGAGCACAC 60.665 60.000 0.00 0.00 34.60 3.82
5591 9495 2.016704 GACACGGTCAGAGCACACG 61.017 63.158 0.00 0.00 32.09 4.49
5592 9496 2.335011 CACGGTCAGAGCACACGA 59.665 61.111 0.00 0.00 0.00 4.35
5593 9497 1.730902 CACGGTCAGAGCACACGAG 60.731 63.158 0.00 0.00 0.00 4.18
5594 9498 2.126307 CGGTCAGAGCACACGAGG 60.126 66.667 0.00 0.00 0.00 4.63
5595 9499 2.433318 GGTCAGAGCACACGAGGC 60.433 66.667 0.00 0.00 0.00 4.70
5596 9500 2.807045 GTCAGAGCACACGAGGCG 60.807 66.667 0.00 0.00 36.08 5.52
5597 9501 2.983592 TCAGAGCACACGAGGCGA 60.984 61.111 0.00 0.00 36.08 5.54
5598 9502 2.505777 CAGAGCACACGAGGCGAG 60.506 66.667 0.00 0.00 36.08 5.03
5599 9503 4.427661 AGAGCACACGAGGCGAGC 62.428 66.667 0.00 0.00 36.08 5.03
5600 9504 4.427661 GAGCACACGAGGCGAGCT 62.428 66.667 0.00 0.00 36.33 4.09
5601 9505 3.052620 GAGCACACGAGGCGAGCTA 62.053 63.158 0.00 0.00 34.72 3.32
5602 9506 2.580867 GCACACGAGGCGAGCTAG 60.581 66.667 0.00 0.00 0.00 3.42
5603 9507 2.103143 CACACGAGGCGAGCTAGG 59.897 66.667 0.00 0.00 0.00 3.02
5604 9508 3.141488 ACACGAGGCGAGCTAGGG 61.141 66.667 0.00 0.00 0.00 3.53
5605 9509 4.577246 CACGAGGCGAGCTAGGGC 62.577 72.222 2.88 2.88 39.06 5.19
5611 9515 4.671569 GCGAGCTAGGGCGGGATG 62.672 72.222 0.00 0.00 44.37 3.51
5612 9516 3.996124 CGAGCTAGGGCGGGATGG 61.996 72.222 0.00 0.00 44.37 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 5.221048 CGAACCAACTCAACCTCATCTTTTT 60.221 40.000 0.00 0.00 0.00 1.94
36 37 4.275936 CGAACCAACTCAACCTCATCTTTT 59.724 41.667 0.00 0.00 0.00 2.27
37 38 3.815401 CGAACCAACTCAACCTCATCTTT 59.185 43.478 0.00 0.00 0.00 2.52
38 39 3.181454 ACGAACCAACTCAACCTCATCTT 60.181 43.478 0.00 0.00 0.00 2.40
39 40 2.368875 ACGAACCAACTCAACCTCATCT 59.631 45.455 0.00 0.00 0.00 2.90
40 41 2.480419 CACGAACCAACTCAACCTCATC 59.520 50.000 0.00 0.00 0.00 2.92
41 42 2.494059 CACGAACCAACTCAACCTCAT 58.506 47.619 0.00 0.00 0.00 2.90
42 43 1.474320 CCACGAACCAACTCAACCTCA 60.474 52.381 0.00 0.00 0.00 3.86
43 44 1.226746 CCACGAACCAACTCAACCTC 58.773 55.000 0.00 0.00 0.00 3.85
44 45 0.544697 ACCACGAACCAACTCAACCT 59.455 50.000 0.00 0.00 0.00 3.50
45 46 1.385528 AACCACGAACCAACTCAACC 58.614 50.000 0.00 0.00 0.00 3.77
46 47 3.624410 ACTTAACCACGAACCAACTCAAC 59.376 43.478 0.00 0.00 0.00 3.18
47 48 3.872771 GACTTAACCACGAACCAACTCAA 59.127 43.478 0.00 0.00 0.00 3.02
48 49 3.133362 AGACTTAACCACGAACCAACTCA 59.867 43.478 0.00 0.00 0.00 3.41
49 50 3.493503 CAGACTTAACCACGAACCAACTC 59.506 47.826 0.00 0.00 0.00 3.01
50 51 3.118519 ACAGACTTAACCACGAACCAACT 60.119 43.478 0.00 0.00 0.00 3.16
51 52 3.001939 CACAGACTTAACCACGAACCAAC 59.998 47.826 0.00 0.00 0.00 3.77
52 53 3.199677 CACAGACTTAACCACGAACCAA 58.800 45.455 0.00 0.00 0.00 3.67
53 54 2.484065 CCACAGACTTAACCACGAACCA 60.484 50.000 0.00 0.00 0.00 3.67
54 55 2.140717 CCACAGACTTAACCACGAACC 58.859 52.381 0.00 0.00 0.00 3.62
55 56 2.140717 CCCACAGACTTAACCACGAAC 58.859 52.381 0.00 0.00 0.00 3.95
56 57 1.764134 ACCCACAGACTTAACCACGAA 59.236 47.619 0.00 0.00 0.00 3.85
57 58 1.416243 ACCCACAGACTTAACCACGA 58.584 50.000 0.00 0.00 0.00 4.35
58 59 2.140717 GAACCCACAGACTTAACCACG 58.859 52.381 0.00 0.00 0.00 4.94
59 60 3.139077 CAGAACCCACAGACTTAACCAC 58.861 50.000 0.00 0.00 0.00 4.16
60 61 2.486548 GCAGAACCCACAGACTTAACCA 60.487 50.000 0.00 0.00 0.00 3.67
61 62 2.152016 GCAGAACCCACAGACTTAACC 58.848 52.381 0.00 0.00 0.00 2.85
62 63 3.127425 AGCAGAACCCACAGACTTAAC 57.873 47.619 0.00 0.00 0.00 2.01
63 64 4.157246 TCTAGCAGAACCCACAGACTTAA 58.843 43.478 0.00 0.00 0.00 1.85
64 65 3.774734 TCTAGCAGAACCCACAGACTTA 58.225 45.455 0.00 0.00 0.00 2.24
65 66 2.609747 TCTAGCAGAACCCACAGACTT 58.390 47.619 0.00 0.00 0.00 3.01
66 67 2.310779 TCTAGCAGAACCCACAGACT 57.689 50.000 0.00 0.00 0.00 3.24
67 68 4.737855 TTATCTAGCAGAACCCACAGAC 57.262 45.455 0.00 0.00 0.00 3.51
68 69 5.755409 TTTTATCTAGCAGAACCCACAGA 57.245 39.130 0.00 0.00 0.00 3.41
112 113 8.887393 GGGTCTTATATTAAATTACAGAGGGGA 58.113 37.037 0.00 0.00 0.00 4.81
113 114 8.891501 AGGGTCTTATATTAAATTACAGAGGGG 58.108 37.037 0.00 0.00 0.00 4.79
125 126 8.736244 GCTGTGTCAAAAAGGGTCTTATATTAA 58.264 33.333 0.00 0.00 0.00 1.40
126 127 7.065324 CGCTGTGTCAAAAAGGGTCTTATATTA 59.935 37.037 0.00 0.00 0.00 0.98
127 128 6.128007 CGCTGTGTCAAAAAGGGTCTTATATT 60.128 38.462 0.00 0.00 0.00 1.28
136 137 3.074412 ACTATCGCTGTGTCAAAAAGGG 58.926 45.455 0.00 0.00 0.00 3.95
137 138 3.667960 GCACTATCGCTGTGTCAAAAAGG 60.668 47.826 0.00 0.00 37.70 3.11
138 139 3.482786 GCACTATCGCTGTGTCAAAAAG 58.517 45.455 0.00 0.00 37.70 2.27
166 167 5.773176 CCCTCCGCAATTTAATATAAACCCT 59.227 40.000 0.00 0.00 0.00 4.34
167 168 5.771165 TCCCTCCGCAATTTAATATAAACCC 59.229 40.000 0.00 0.00 0.00 4.11
203 204 8.057536 ACAATTCCTCGTCCTATCTATCATAC 57.942 38.462 0.00 0.00 0.00 2.39
206 207 8.651589 AATACAATTCCTCGTCCTATCTATCA 57.348 34.615 0.00 0.00 0.00 2.15
209 210 8.967918 CCATAATACAATTCCTCGTCCTATCTA 58.032 37.037 0.00 0.00 0.00 1.98
212 213 7.674348 TCTCCATAATACAATTCCTCGTCCTAT 59.326 37.037 0.00 0.00 0.00 2.57
218 219 6.312426 GCAGATCTCCATAATACAATTCCTCG 59.688 42.308 0.00 0.00 0.00 4.63
227 228 6.676943 GCGTCTCTAGCAGATCTCCATAATAC 60.677 46.154 0.00 0.00 32.08 1.89
240 241 1.067565 TGTTTCAGGCGTCTCTAGCAG 60.068 52.381 0.00 0.00 36.08 4.24
247 248 2.364324 TGAGTTAGTGTTTCAGGCGTCT 59.636 45.455 0.00 0.00 0.00 4.18
250 251 2.416547 CCATGAGTTAGTGTTTCAGGCG 59.583 50.000 0.00 0.00 0.00 5.52
254 255 3.758023 CCATGCCATGAGTTAGTGTTTCA 59.242 43.478 6.18 0.00 0.00 2.69
256 257 2.493278 GCCATGCCATGAGTTAGTGTTT 59.507 45.455 6.18 0.00 0.00 2.83
261 263 1.884579 GGATGCCATGCCATGAGTTAG 59.115 52.381 6.18 0.00 0.00 2.34
265 267 0.753848 TGTGGATGCCATGCCATGAG 60.754 55.000 6.18 0.00 35.28 2.90
286 288 2.834689 CCACGTTTTGTATCGCTTCAC 58.165 47.619 0.00 0.00 0.00 3.18
359 361 0.250513 ACGGAGTCTTGAATGGCTCC 59.749 55.000 5.19 5.19 42.90 4.70
385 387 0.803117 GCTTCTCGGTTTGTAAGGGC 59.197 55.000 0.00 0.00 0.00 5.19
390 392 0.675083 TGGTCGCTTCTCGGTTTGTA 59.325 50.000 0.00 0.00 39.05 2.41
438 440 2.235016 ACGGTGACACGCAAAGTCG 61.235 57.895 0.00 0.00 38.83 4.18
478 486 2.282180 GGGGTTTTGCTCTGGCGA 60.282 61.111 0.00 0.00 42.25 5.54
499 507 2.115052 TGGCCGTGAGCATTTGGT 59.885 55.556 0.00 0.00 46.50 3.67
555 563 1.769098 CTGTCCAGCATTGATCCGCG 61.769 60.000 0.00 0.00 0.00 6.46
558 566 2.715046 TGTTCTGTCCAGCATTGATCC 58.285 47.619 0.00 0.00 0.00 3.36
561 569 3.953612 ACTTTTGTTCTGTCCAGCATTGA 59.046 39.130 0.00 0.00 0.00 2.57
569 577 3.565482 TCATGAGCACTTTTGTTCTGTCC 59.435 43.478 0.00 0.00 34.19 4.02
592 610 3.328189 GCTTGGATCAGCGCTAGC 58.672 61.111 10.99 11.30 45.58 3.42
598 616 3.512516 GGCACCGCTTGGATCAGC 61.513 66.667 0.00 0.00 36.26 4.26
620 662 3.712881 GACGACGCCAACTGTGCC 61.713 66.667 0.00 0.00 0.00 5.01
649 691 3.162666 TCCCAGTCTGTATCGTGTTCTT 58.837 45.455 0.00 0.00 0.00 2.52
699 749 2.448931 TTCTTGGGGACGGTGGGT 60.449 61.111 0.00 0.00 0.00 4.51
701 751 2.033602 GGTTCTTGGGGACGGTGG 59.966 66.667 0.00 0.00 0.00 4.61
702 752 2.033602 GGGTTCTTGGGGACGGTG 59.966 66.667 0.00 0.00 0.00 4.94
703 753 3.254617 GGGGTTCTTGGGGACGGT 61.255 66.667 0.00 0.00 0.00 4.83
704 754 1.202769 TAAGGGGTTCTTGGGGACGG 61.203 60.000 0.00 0.00 36.93 4.79
705 755 0.916809 ATAAGGGGTTCTTGGGGACG 59.083 55.000 0.00 0.00 36.93 4.79
706 756 2.206223 AGATAAGGGGTTCTTGGGGAC 58.794 52.381 0.00 0.00 36.93 4.46
707 757 2.680439 AGATAAGGGGTTCTTGGGGA 57.320 50.000 0.00 0.00 36.93 4.81
753 803 4.729856 CGGGTTGGACGGACGGAC 62.730 72.222 0.00 0.00 0.00 4.79
766 819 0.690077 GGGGTGGTCTTATCTCGGGT 60.690 60.000 0.00 0.00 0.00 5.28
801 856 2.200092 AAACGCATTGGGTGGGGT 59.800 55.556 7.17 0.00 43.43 4.95
815 870 4.446857 TTCGTTCATCAGACGAACAAAC 57.553 40.909 9.90 0.00 42.35 2.93
833 888 0.095245 CAATGCGCACTACCAGTTCG 59.905 55.000 14.90 0.00 37.89 3.95
847 902 0.462759 CTTCTCCCCGTCCTCAATGC 60.463 60.000 0.00 0.00 0.00 3.56
858 913 2.105649 CTCTGCCCTAAATCTTCTCCCC 59.894 54.545 0.00 0.00 0.00 4.81
873 928 1.239347 GACTGACCCAAAACTCTGCC 58.761 55.000 0.00 0.00 0.00 4.85
888 943 5.163754 ACTCAAAGGAACTGTTTTTCGACTG 60.164 40.000 0.00 0.00 40.86 3.51
904 959 8.410141 ACTCTATAAATCTTCTCGACTCAAAGG 58.590 37.037 0.00 0.00 0.00 3.11
961 1016 4.023291 CCACCCAAAATAATGGTACTGCT 58.977 43.478 0.00 0.00 38.91 4.24
962 1017 3.132111 CCCACCCAAAATAATGGTACTGC 59.868 47.826 0.00 0.00 38.91 4.40
963 1018 4.605183 TCCCACCCAAAATAATGGTACTG 58.395 43.478 0.00 0.00 38.91 2.74
981 1036 2.595463 GCACAGCAACAGCTCCCA 60.595 61.111 0.00 0.00 36.19 4.37
1029 1087 6.183361 GGATAATGGAGGATAAAGTTCTGGGT 60.183 42.308 0.00 0.00 0.00 4.51
1227 1312 3.657350 CGGATGGTGGGGTTGGGT 61.657 66.667 0.00 0.00 0.00 4.51
1236 1321 3.147595 TCGAGCCTCCGGATGGTG 61.148 66.667 16.51 8.73 36.30 4.17
1347 1432 1.192757 CCGTAGAGATCGTAGTGCTCG 59.807 57.143 0.00 0.00 34.94 5.03
1435 1530 3.092301 AGATCGAGTCACCTGATCACAA 58.908 45.455 9.02 0.00 40.72 3.33
1462 1557 0.709467 CACATCGCCGCACAAAATTG 59.291 50.000 0.00 0.00 0.00 2.32
1464 1559 1.444212 GCACATCGCCGCACAAAAT 60.444 52.632 0.00 0.00 32.94 1.82
1586 1688 2.126071 CACAGGCCGACGGTAGTG 60.126 66.667 16.73 16.80 0.00 2.74
1667 1793 1.927174 CGGAGAAGCAGTAATCAACCG 59.073 52.381 0.00 0.00 33.91 4.44
1677 1803 3.120511 GCTTTGTTCTAACGGAGAAGCAG 60.121 47.826 13.42 1.67 45.06 4.24
1705 1831 8.836413 GCCAAACTACATTCTTACAGCATATTA 58.164 33.333 0.00 0.00 0.00 0.98
1706 1832 7.557719 AGCCAAACTACATTCTTACAGCATATT 59.442 33.333 0.00 0.00 0.00 1.28
1712 1843 5.700832 TGACAGCCAAACTACATTCTTACAG 59.299 40.000 0.00 0.00 0.00 2.74
1730 1861 2.131183 GGCTATCTCATCGTTGACAGC 58.869 52.381 9.79 9.79 0.00 4.40
1756 1887 6.655078 AATTGACAAGCACTAATGAACCTT 57.345 33.333 0.00 0.00 0.00 3.50
1758 1889 6.374333 TCCTAATTGACAAGCACTAATGAACC 59.626 38.462 0.00 0.00 0.00 3.62
1773 1904 3.934068 TCCCGACTTTGTCCTAATTGAC 58.066 45.455 0.00 0.00 35.77 3.18
1782 1913 2.621526 ACCACAAATTCCCGACTTTGTC 59.378 45.455 9.47 0.00 42.16 3.18
1793 1924 6.983890 ACATCCTTACAACAAACCACAAATTC 59.016 34.615 0.00 0.00 0.00 2.17
1797 1928 4.035792 CGACATCCTTACAACAAACCACAA 59.964 41.667 0.00 0.00 0.00 3.33
1800 1931 3.811083 ACGACATCCTTACAACAAACCA 58.189 40.909 0.00 0.00 0.00 3.67
1801 1932 4.823790 AACGACATCCTTACAACAAACC 57.176 40.909 0.00 0.00 0.00 3.27
1803 1934 7.556733 ACTTAAACGACATCCTTACAACAAA 57.443 32.000 0.00 0.00 0.00 2.83
1814 1946 7.686938 CGGACTTTAATCAACTTAAACGACATC 59.313 37.037 0.00 0.00 34.99 3.06
1818 1950 8.487176 GTTACGGACTTTAATCAACTTAAACGA 58.513 33.333 0.00 0.00 34.99 3.85
1824 1956 7.308951 CCATTGGTTACGGACTTTAATCAACTT 60.309 37.037 0.00 0.00 33.43 2.66
1832 1964 2.306512 AGCCCATTGGTTACGGACTTTA 59.693 45.455 1.20 0.00 0.00 1.85
1839 1971 3.181480 CCCAAATAAGCCCATTGGTTACG 60.181 47.826 1.20 0.00 41.62 3.18
1883 2025 6.146021 CCCAGTCTAAATTTGCATCAAACAAC 59.854 38.462 0.00 0.00 36.13 3.32
1884 2026 6.222389 CCCAGTCTAAATTTGCATCAAACAA 58.778 36.000 0.00 0.00 36.13 2.83
1948 2090 4.537135 ACCCGTGATAGCCAATATGTAG 57.463 45.455 0.00 0.00 0.00 2.74
1950 2092 3.135712 TGAACCCGTGATAGCCAATATGT 59.864 43.478 0.00 0.00 0.00 2.29
1951 2093 3.738982 TGAACCCGTGATAGCCAATATG 58.261 45.455 0.00 0.00 0.00 1.78
1957 2099 1.146263 CCCTGAACCCGTGATAGCC 59.854 63.158 0.00 0.00 0.00 3.93
1960 2102 1.612199 GCAAACCCTGAACCCGTGATA 60.612 52.381 0.00 0.00 0.00 2.15
1972 2114 1.134037 TCCAACTGTTACGCAAACCCT 60.134 47.619 0.00 0.00 37.27 4.34
1975 2117 2.550606 TCCATCCAACTGTTACGCAAAC 59.449 45.455 0.00 0.00 38.67 2.93
1994 2136 9.906660 TGTCAACACAACTTCATAAATAAATCC 57.093 29.630 0.00 0.00 0.00 3.01
2030 2172 4.214971 CACTGAAAATTCTGCAGCTGTACT 59.785 41.667 16.64 0.00 33.03 2.73
2034 2176 2.030185 AGCACTGAAAATTCTGCAGCTG 60.030 45.455 10.11 10.11 38.44 4.24
2097 3710 9.220767 AGATGTCGAAAACTTTTTATCTAGCTT 57.779 29.630 0.00 0.00 0.00 3.74
2428 4091 5.947443 AGAAGATTGTTTGCAGCTGTAATC 58.053 37.500 18.31 17.07 0.00 1.75
2554 4217 1.802508 CGTCGGAGCATTACATCAGCA 60.803 52.381 0.00 0.00 0.00 4.41
2623 4286 1.335051 GCAAAACGCCTCACTTCTTCC 60.335 52.381 0.00 0.00 32.94 3.46
2632 4295 0.940991 CAAGCCTTGCAAAACGCCTC 60.941 55.000 0.00 0.00 41.33 4.70
2749 4412 2.486472 AGCCTGTTTCTCTCACCATG 57.514 50.000 0.00 0.00 0.00 3.66
2875 4538 2.663196 GCTGTAACCGGCTCACCT 59.337 61.111 0.00 0.00 40.01 4.00
2956 4619 5.003804 GGAGTTCCTTCAAGAGTTTGCATA 58.996 41.667 0.00 0.00 34.21 3.14
2974 4637 3.254166 CAGCATGCACTAAAACAGGAGTT 59.746 43.478 21.98 0.00 40.40 3.01
3076 4739 5.652994 AACCAGCTTCTGTAACAACAAAA 57.347 34.783 0.00 0.00 0.00 2.44
3609 5273 9.426837 CAAACATATGAAATGGACAACAGATTT 57.573 29.630 10.38 0.00 0.00 2.17
3615 5279 7.542130 GGAAGACAAACATATGAAATGGACAAC 59.458 37.037 10.38 3.52 0.00 3.32
3642 5307 5.824904 AAATTCACTACATCATCAGCACC 57.175 39.130 0.00 0.00 0.00 5.01
3643 5308 6.615088 ACAAAATTCACTACATCATCAGCAC 58.385 36.000 0.00 0.00 0.00 4.40
3647 5312 8.849168 ACAGAAACAAAATTCACTACATCATCA 58.151 29.630 0.00 0.00 0.00 3.07
3692 5358 1.679032 GGGCTGGTCTATGTTGGACAC 60.679 57.143 0.00 0.00 35.61 3.67
3706 5372 9.533831 AATAATATTAATTACTCAAGGGGCTGG 57.466 33.333 0.00 0.00 30.42 4.85
3753 5419 7.698130 GTGACCACTTTGATATTGTTGATAAGC 59.302 37.037 0.00 0.00 0.00 3.09
3762 5428 4.379813 GGTGCAGTGACCACTTTGATATTG 60.380 45.833 0.00 0.00 40.20 1.90
3821 5488 9.831737 CTAGGCAATAATGTATTAGTGAAATGC 57.168 33.333 14.20 6.54 39.83 3.56
3837 5504 5.182487 TGAAATCAACTCGCTAGGCAATAA 58.818 37.500 0.00 0.00 0.00 1.40
3840 5507 3.052455 TGAAATCAACTCGCTAGGCAA 57.948 42.857 0.00 0.00 0.00 4.52
3898 5565 7.737972 TCGATTCTGTAAAATTTGGACTTCA 57.262 32.000 0.00 0.00 0.00 3.02
3900 5567 8.166422 AGTTCGATTCTGTAAAATTTGGACTT 57.834 30.769 0.00 0.00 0.00 3.01
3902 5569 8.718734 ACTAGTTCGATTCTGTAAAATTTGGAC 58.281 33.333 0.00 0.00 0.00 4.02
3904 5571 9.329913 CAACTAGTTCGATTCTGTAAAATTTGG 57.670 33.333 4.77 0.00 0.00 3.28
3906 5573 8.021396 GGCAACTAGTTCGATTCTGTAAAATTT 58.979 33.333 4.77 0.00 0.00 1.82
3907 5574 7.527457 GGCAACTAGTTCGATTCTGTAAAATT 58.473 34.615 4.77 0.00 0.00 1.82
3909 5576 6.476243 GGCAACTAGTTCGATTCTGTAAAA 57.524 37.500 4.77 0.00 0.00 1.52
3930 5597 8.894768 AGTTAAATGACATGATAGAGTTAGGC 57.105 34.615 0.00 0.00 0.00 3.93
3952 5619 8.328758 TCCAAGATCAACCTGAATATACAAGTT 58.671 33.333 0.00 0.00 0.00 2.66
3961 5628 3.866651 CGACTCCAAGATCAACCTGAAT 58.133 45.455 0.00 0.00 0.00 2.57
3962 5629 2.612972 GCGACTCCAAGATCAACCTGAA 60.613 50.000 0.00 0.00 0.00 3.02
4127 5794 3.236896 AGGGAGTACAACGGAAGAAGAA 58.763 45.455 0.00 0.00 0.00 2.52
4128 5795 2.824341 GAGGGAGTACAACGGAAGAAGA 59.176 50.000 0.00 0.00 0.00 2.87
4129 5796 2.094130 GGAGGGAGTACAACGGAAGAAG 60.094 54.545 0.00 0.00 0.00 2.85
4136 5803 1.509923 GGACGGAGGGAGTACAACG 59.490 63.158 0.00 0.00 0.00 4.10
4137 5804 0.901580 TGGGACGGAGGGAGTACAAC 60.902 60.000 0.00 0.00 0.00 3.32
4163 5830 9.120538 ACTAATGTAGTGTCAAAACAACATCTT 57.879 29.630 0.00 0.00 36.35 2.40
4164 5831 8.677148 ACTAATGTAGTGTCAAAACAACATCT 57.323 30.769 0.00 0.00 36.35 2.90
4194 5861 6.938030 TCTGTCCCATAATGTAAGACGTTTTT 59.062 34.615 0.00 0.00 0.00 1.94
4195 5862 6.469410 TCTGTCCCATAATGTAAGACGTTTT 58.531 36.000 0.00 0.00 0.00 2.43
4196 5863 6.045072 TCTGTCCCATAATGTAAGACGTTT 57.955 37.500 0.00 0.00 0.00 3.60
4198 5865 4.099573 CCTCTGTCCCATAATGTAAGACGT 59.900 45.833 0.00 0.00 0.00 4.34
4199 5866 4.501571 CCCTCTGTCCCATAATGTAAGACG 60.502 50.000 0.00 0.00 0.00 4.18
4200 5867 4.654262 TCCCTCTGTCCCATAATGTAAGAC 59.346 45.833 0.00 0.00 0.00 3.01
4202 5869 4.656112 ACTCCCTCTGTCCCATAATGTAAG 59.344 45.833 0.00 0.00 0.00 2.34
4203 5870 4.631234 ACTCCCTCTGTCCCATAATGTAA 58.369 43.478 0.00 0.00 0.00 2.41
4204 5871 4.280789 ACTCCCTCTGTCCCATAATGTA 57.719 45.455 0.00 0.00 0.00 2.29
4206 5873 5.832539 ATTACTCCCTCTGTCCCATAATG 57.167 43.478 0.00 0.00 0.00 1.90
4208 5875 6.449956 AGTAATTACTCCCTCTGTCCCATAA 58.550 40.000 12.50 0.00 0.00 1.90
4209 5876 6.039415 AGTAATTACTCCCTCTGTCCCATA 57.961 41.667 12.50 0.00 0.00 2.74
4210 5877 4.897051 AGTAATTACTCCCTCTGTCCCAT 58.103 43.478 12.50 0.00 0.00 4.00
4211 5878 4.348020 AGTAATTACTCCCTCTGTCCCA 57.652 45.455 12.50 0.00 0.00 4.37
4212 5879 5.898397 AGTAAGTAATTACTCCCTCTGTCCC 59.102 44.000 18.28 0.00 34.99 4.46
4213 5880 6.380560 ACAGTAAGTAATTACTCCCTCTGTCC 59.619 42.308 23.50 3.72 35.70 4.02
4214 5881 7.407393 ACAGTAAGTAATTACTCCCTCTGTC 57.593 40.000 23.50 10.68 35.70 3.51
4215 5882 8.890410 TTACAGTAAGTAATTACTCCCTCTGT 57.110 34.615 27.41 27.41 37.77 3.41
4282 6107 4.142182 GGCAAAATCTTATAACTGCAGGCA 60.142 41.667 19.93 5.20 0.00 4.75
4284 6109 5.585390 CAGGCAAAATCTTATAACTGCAGG 58.415 41.667 19.93 0.00 0.00 4.85
4292 6121 5.945784 ACAAGTCAGCAGGCAAAATCTTATA 59.054 36.000 0.00 0.00 0.00 0.98
4306 6135 6.073440 GGAAAGACGTAATAAACAAGTCAGCA 60.073 38.462 0.00 0.00 34.56 4.41
4315 6144 5.292834 GGCCTACAGGAAAGACGTAATAAAC 59.707 44.000 0.00 0.00 37.39 2.01
4317 6146 4.440525 CGGCCTACAGGAAAGACGTAATAA 60.441 45.833 0.00 0.00 37.39 1.40
4321 6150 0.813184 CGGCCTACAGGAAAGACGTA 59.187 55.000 0.00 0.00 37.39 3.57
4322 6151 0.896940 TCGGCCTACAGGAAAGACGT 60.897 55.000 0.00 0.00 37.39 4.34
4323 6152 0.245539 TTCGGCCTACAGGAAAGACG 59.754 55.000 0.00 0.00 37.39 4.18
4324 6153 2.467566 TTTCGGCCTACAGGAAAGAC 57.532 50.000 0.00 0.00 37.39 3.01
4325 6154 2.874457 GCTTTTCGGCCTACAGGAAAGA 60.874 50.000 12.04 0.00 37.39 2.52
4326 6155 1.468914 GCTTTTCGGCCTACAGGAAAG 59.531 52.381 0.00 2.76 37.39 2.62
4348 6177 4.460382 CCTTGCTTGGTGTACATCTCAATT 59.540 41.667 7.81 0.00 0.00 2.32
4351 6180 2.875672 GCCTTGCTTGGTGTACATCTCA 60.876 50.000 7.81 0.15 0.00 3.27
4452 6281 0.806102 TCTTATCGGCAGCACGAAGC 60.806 55.000 9.60 0.00 46.92 3.86
4456 6285 1.202973 CGTCTCTTATCGGCAGCACG 61.203 60.000 0.00 0.00 0.00 5.34
4519 6348 0.454600 CAGGCATTGTGCTCATGGTC 59.545 55.000 1.64 0.00 44.28 4.02
4591 6420 3.678289 TCATGACAGACCCATGACTTTG 58.322 45.455 0.00 0.00 43.67 2.77
4621 6450 1.745489 CAGCCTAGAAACGGTGCCC 60.745 63.158 0.00 0.00 0.00 5.36
4664 6493 2.543848 TGAAACTGCACACTGTCGATTC 59.456 45.455 0.00 0.00 0.00 2.52
4672 6501 3.432046 CCCCAAAATTGAAACTGCACACT 60.432 43.478 0.00 0.00 0.00 3.55
4700 6529 7.012327 CCATTATTCGTTTATTCTGCTTCAGGA 59.988 37.037 0.00 0.00 31.51 3.86
4717 6546 1.497278 CCGATGCGGCCATTATTCG 59.503 57.895 2.24 3.49 41.17 3.34
4729 6558 3.443045 CACCAAGCCACCCGATGC 61.443 66.667 0.00 0.00 0.00 3.91
4734 6563 2.676471 AATCGCACCAAGCCACCC 60.676 61.111 0.00 0.00 41.38 4.61
4774 6603 5.221441 CGACCAAATCTACATCCATCAGGTA 60.221 44.000 0.00 0.00 35.89 3.08
4777 6606 4.948847 TCGACCAAATCTACATCCATCAG 58.051 43.478 0.00 0.00 0.00 2.90
4798 6627 2.656560 ACAGACAGACGCTATGGTTC 57.343 50.000 0.00 0.00 0.00 3.62
4807 6636 2.293677 ACCAACAGAGTACAGACAGACG 59.706 50.000 0.00 0.00 0.00 4.18
4826 6655 6.744112 TGAACATCAAAACATAAGGAACACC 58.256 36.000 0.00 0.00 0.00 4.16
4839 6668 4.617995 CGCCCATAAAGCTGAACATCAAAA 60.618 41.667 0.00 0.00 0.00 2.44
4858 6717 3.558099 GAACCAGCAAAGCACGCCC 62.558 63.158 0.00 0.00 0.00 6.13
4887 8688 5.181690 TGTAGCAACGCAAAGAAAATTCT 57.818 34.783 0.00 0.00 39.74 2.40
4913 8714 4.864334 GGCAGACCCAGCCCATCG 62.864 72.222 0.00 0.00 46.50 3.84
4950 8782 1.750193 CGGCCCAGTAATGACAACAT 58.250 50.000 0.00 0.00 38.50 2.71
4957 8789 2.588877 CGGAGCGGCCCAGTAATG 60.589 66.667 0.00 0.00 0.00 1.90
4958 8790 3.081409 ACGGAGCGGCCCAGTAAT 61.081 61.111 0.00 0.00 0.00 1.89
4959 8791 3.766691 GACGGAGCGGCCCAGTAA 61.767 66.667 0.00 0.00 0.00 2.24
5008 8841 2.280797 GGCAGCGTGACAACTCCA 60.281 61.111 0.00 0.00 0.00 3.86
5027 8860 0.879090 GGGGAGACGAACGCAAAAAT 59.121 50.000 0.00 0.00 0.00 1.82
5031 8864 1.259142 TATGGGGGAGACGAACGCAA 61.259 55.000 0.00 0.00 0.00 4.85
5032 8865 1.259142 TTATGGGGGAGACGAACGCA 61.259 55.000 0.00 0.00 0.00 5.24
5056 8889 3.457234 GTTGAAGGGAAAAGCAAACTGG 58.543 45.455 0.00 0.00 0.00 4.00
5059 8892 3.113322 GTCGTTGAAGGGAAAAGCAAAC 58.887 45.455 0.00 0.00 0.00 2.93
5073 8906 6.988622 TGTAAAAAGAAAAGGAGTCGTTGA 57.011 33.333 0.00 0.00 0.00 3.18
5076 8909 6.997239 AGTTGTAAAAAGAAAAGGAGTCGT 57.003 33.333 0.00 0.00 0.00 4.34
5077 8910 8.610035 AGTAAGTTGTAAAAAGAAAAGGAGTCG 58.390 33.333 0.00 0.00 0.00 4.18
5107 8940 4.469657 ACATCAGTCCTACCAAGCAAAAA 58.530 39.130 0.00 0.00 0.00 1.94
5108 8941 4.098914 ACATCAGTCCTACCAAGCAAAA 57.901 40.909 0.00 0.00 0.00 2.44
5109 8942 3.788227 ACATCAGTCCTACCAAGCAAA 57.212 42.857 0.00 0.00 0.00 3.68
5110 8943 3.327757 AGAACATCAGTCCTACCAAGCAA 59.672 43.478 0.00 0.00 0.00 3.91
5112 8945 3.618690 AGAACATCAGTCCTACCAAGC 57.381 47.619 0.00 0.00 0.00 4.01
5116 8949 7.281100 CCATTTTTCTAGAACATCAGTCCTACC 59.719 40.741 4.18 0.00 0.00 3.18
5183 9044 9.799106 TCATCCTATGTTTTCTTCTTTCTTTCT 57.201 29.630 0.00 0.00 0.00 2.52
5211 9072 4.594920 AGTTGGTCTATGTGGCTGCTATAT 59.405 41.667 0.00 0.00 0.00 0.86
5212 9073 3.967326 AGTTGGTCTATGTGGCTGCTATA 59.033 43.478 0.00 0.00 0.00 1.31
5213 9074 2.774234 AGTTGGTCTATGTGGCTGCTAT 59.226 45.455 0.00 0.00 0.00 2.97
5225 9086 1.547372 GCCTACCGTTCAGTTGGTCTA 59.453 52.381 0.00 0.00 39.70 2.59
5314 9213 2.541556 GGCGAGGTCTTGACTATTGAC 58.458 52.381 0.61 0.00 0.00 3.18
5315 9214 1.134367 CGGCGAGGTCTTGACTATTGA 59.866 52.381 0.00 0.00 0.00 2.57
5316 9215 1.560923 CGGCGAGGTCTTGACTATTG 58.439 55.000 0.00 0.00 0.00 1.90
5317 9216 0.460311 CCGGCGAGGTCTTGACTATT 59.540 55.000 9.30 0.00 34.51 1.73
5409 9308 1.135053 GGTAGGGTTTGAGAGCGAGAC 60.135 57.143 0.00 0.00 0.00 3.36
5410 9309 1.183549 GGTAGGGTTTGAGAGCGAGA 58.816 55.000 0.00 0.00 0.00 4.04
5450 9354 2.743928 GGTGAAGTGGCCTCTGCG 60.744 66.667 8.37 0.00 38.85 5.18
5559 9463 4.476410 TGTCTCGCAGCGCCTACG 62.476 66.667 10.87 5.76 44.07 3.51
5560 9464 2.881352 GTGTCTCGCAGCGCCTAC 60.881 66.667 10.87 8.45 0.00 3.18
5561 9465 4.476410 CGTGTCTCGCAGCGCCTA 62.476 66.667 10.87 0.00 0.00 3.93
5565 9469 4.700365 TGACCGTGTCTCGCAGCG 62.700 66.667 9.06 9.06 38.35 5.18
5566 9470 2.807045 CTGACCGTGTCTCGCAGC 60.807 66.667 5.77 0.00 38.35 5.25
5567 9471 1.154131 CTCTGACCGTGTCTCGCAG 60.154 63.158 5.77 0.00 38.35 5.18
5568 9472 2.954611 CTCTGACCGTGTCTCGCA 59.045 61.111 5.77 0.00 38.35 5.10
5569 9473 2.505118 GCTCTGACCGTGTCTCGC 60.505 66.667 5.77 2.75 38.35 5.03
5570 9474 1.442857 GTGCTCTGACCGTGTCTCG 60.443 63.158 5.77 0.00 39.52 4.04
5571 9475 0.664767 GTGTGCTCTGACCGTGTCTC 60.665 60.000 5.77 0.00 33.15 3.36
5572 9476 1.364171 GTGTGCTCTGACCGTGTCT 59.636 57.895 5.77 0.00 33.15 3.41
5573 9477 2.016704 CGTGTGCTCTGACCGTGTC 61.017 63.158 0.00 0.00 0.00 3.67
5574 9478 2.027605 CGTGTGCTCTGACCGTGT 59.972 61.111 0.00 0.00 0.00 4.49
5575 9479 1.730902 CTCGTGTGCTCTGACCGTG 60.731 63.158 0.00 0.00 0.00 4.94
5576 9480 2.645567 CTCGTGTGCTCTGACCGT 59.354 61.111 0.00 0.00 0.00 4.83
5577 9481 2.126307 CCTCGTGTGCTCTGACCG 60.126 66.667 0.00 0.00 0.00 4.79
5578 9482 2.433318 GCCTCGTGTGCTCTGACC 60.433 66.667 0.00 0.00 0.00 4.02
5579 9483 2.807045 CGCCTCGTGTGCTCTGAC 60.807 66.667 0.00 0.00 0.00 3.51
5580 9484 2.982744 CTCGCCTCGTGTGCTCTGA 61.983 63.158 0.00 0.00 0.00 3.27
5581 9485 2.505777 CTCGCCTCGTGTGCTCTG 60.506 66.667 0.00 0.00 0.00 3.35
5582 9486 4.427661 GCTCGCCTCGTGTGCTCT 62.428 66.667 0.00 0.00 0.00 4.09
5583 9487 2.928313 CTAGCTCGCCTCGTGTGCTC 62.928 65.000 5.16 0.00 33.57 4.26
5584 9488 3.057547 CTAGCTCGCCTCGTGTGCT 62.058 63.158 0.00 6.93 34.93 4.40
5585 9489 2.580867 CTAGCTCGCCTCGTGTGC 60.581 66.667 0.00 0.00 0.00 4.57
5586 9490 2.103143 CCTAGCTCGCCTCGTGTG 59.897 66.667 0.00 0.00 0.00 3.82
5587 9491 3.141488 CCCTAGCTCGCCTCGTGT 61.141 66.667 0.00 0.00 0.00 4.49
5588 9492 4.577246 GCCCTAGCTCGCCTCGTG 62.577 72.222 0.00 0.00 35.50 4.35
5594 9498 4.671569 CATCCCGCCCTAGCTCGC 62.672 72.222 0.00 0.00 36.60 5.03
5595 9499 3.996124 CCATCCCGCCCTAGCTCG 61.996 72.222 0.00 0.00 36.60 5.03


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.