Multiple sequence alignment - TraesCS5A01G232600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G232600 chr5A 100.000 2761 0 0 1 2761 447630002 447632762 0.000000e+00 5099.0
1 TraesCS5A01G232600 chr5A 97.906 1337 20 1 1433 2761 447638475 447639811 0.000000e+00 2307.0
2 TraesCS5A01G232600 chr5A 83.589 457 61 7 1 457 509146387 509145945 1.530000e-112 416.0
3 TraesCS5A01G232600 chr5A 83.589 457 61 6 1 457 552870881 552870439 1.530000e-112 416.0
4 TraesCS5A01G232600 chr5A 92.014 288 16 6 1118 1405 447624436 447624156 5.540000e-107 398.0
5 TraesCS5A01G232600 chr5A 81.947 493 42 21 940 1406 447552200 447551729 9.340000e-100 374.0
6 TraesCS5A01G232600 chr5A 79.012 162 25 6 1174 1326 571425353 571425514 4.860000e-18 102.0
7 TraesCS5A01G232600 chr5A 98.077 52 1 0 2206 2257 447632158 447632209 1.050000e-14 91.6
8 TraesCS5A01G232600 chr5A 98.077 52 1 0 2157 2208 447632207 447632258 1.050000e-14 91.6
9 TraesCS5A01G232600 chr5A 98.077 52 1 0 2206 2257 447639207 447639258 1.050000e-14 91.6
10 TraesCS5A01G232600 chr5A 98.077 52 1 0 2157 2208 447639256 447639307 1.050000e-14 91.6
11 TraesCS5A01G232600 chr5D 86.746 928 48 30 491 1408 344447506 344446644 0.000000e+00 963.0
12 TraesCS5A01G232600 chr5D 93.629 361 22 1 1 360 344464904 344464544 3.130000e-149 538.0
13 TraesCS5A01G232600 chr5D 81.053 665 55 32 751 1376 344468164 344468796 5.390000e-127 464.0
14 TraesCS5A01G232600 chr5D 83.807 457 60 7 1 457 323793938 323793496 3.290000e-114 422.0
15 TraesCS5A01G232600 chr5D 82.932 457 64 7 1 457 323801207 323800765 1.540000e-107 399.0
16 TraesCS5A01G232600 chr5D 87.245 196 21 3 1499 1692 344446579 344446386 1.290000e-53 220.0
17 TraesCS5A01G232600 chr5D 77.528 178 29 8 1174 1341 452493837 452494013 2.260000e-16 97.1
18 TraesCS5A01G232600 chr5B 88.260 724 48 18 692 1410 407621980 407622671 0.000000e+00 832.0
19 TraesCS5A01G232600 chr5B 80.902 665 62 36 751 1376 407615609 407614971 5.390000e-127 464.0
20 TraesCS5A01G232600 chr5B 83.683 429 54 8 1 428 427252215 427251802 9.270000e-105 390.0
21 TraesCS5A01G232600 chr7D 84.245 457 54 8 1 457 56241566 56241128 1.960000e-116 429.0
22 TraesCS5A01G232600 chr7D 81.188 101 13 5 2523 2619 440894711 440894809 2.950000e-10 76.8
23 TraesCS5A01G232600 chr2A 83.370 457 62 6 1 457 38775010 38774568 7.120000e-111 411.0
24 TraesCS5A01G232600 chr3D 83.151 457 59 9 1 457 439085720 439085282 4.280000e-108 401.0
25 TraesCS5A01G232600 chr3D 85.333 75 11 0 378 452 182199841 182199915 8.200000e-11 78.7
26 TraesCS5A01G232600 chr7B 83.043 460 58 8 1 457 401399110 401399552 1.540000e-107 399.0
27 TraesCS5A01G232600 chr6D 81.818 121 20 2 2502 2621 326833397 326833516 1.750000e-17 100.0
28 TraesCS5A01G232600 chr6A 77.698 139 28 2 2485 2621 13442721 13442858 6.340000e-12 82.4
29 TraesCS5A01G232600 chr6B 78.906 128 18 7 2499 2621 25096475 25096598 8.200000e-11 78.7
30 TraesCS5A01G232600 chr3B 85.333 75 11 0 378 452 260650174 260650248 8.200000e-11 78.7
31 TraesCS5A01G232600 chr2B 95.556 45 2 0 1805 1849 229184199 229184243 3.810000e-09 73.1
32 TraesCS5A01G232600 chr2B 74.534 161 32 9 2485 2638 198990293 198990135 8.260000e-06 62.1
33 TraesCS5A01G232600 chr4A 88.462 52 2 2 2591 2638 310385651 310385600 2.970000e-05 60.2
34 TraesCS5A01G232600 chr2D 100.000 28 0 0 1724 1751 27599381 27599354 5.000000e-03 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G232600 chr5A 447630002 447632762 2760 False 1760.733333 5099 98.7180 1 2761 3 chr5A.!!$F2 2760
1 TraesCS5A01G232600 chr5A 447638475 447639811 1336 False 830.066667 2307 98.0200 1433 2761 3 chr5A.!!$F3 1328
2 TraesCS5A01G232600 chr5D 344446386 344447506 1120 True 591.500000 963 86.9955 491 1692 2 chr5D.!!$R4 1201
3 TraesCS5A01G232600 chr5D 344468164 344468796 632 False 464.000000 464 81.0530 751 1376 1 chr5D.!!$F1 625
4 TraesCS5A01G232600 chr5B 407621980 407622671 691 False 832.000000 832 88.2600 692 1410 1 chr5B.!!$F1 718
5 TraesCS5A01G232600 chr5B 407614971 407615609 638 True 464.000000 464 80.9020 751 1376 1 chr5B.!!$R1 625

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
376 377 0.106419 AAAAGTTGAACCCGGCTGGA 60.106 50.0 15.09 0.00 37.49 3.86 F
1097 1145 0.109597 CTTGGTGAATTCGCTGGTGC 60.110 55.0 18.02 2.44 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1466 1540 0.249615 GCTCGGCAGACATATGCTCA 60.250 55.000 1.58 0.0 45.75 4.26 R
2665 2755 2.363680 AGTCGGAGCTGAATTCATCGAT 59.636 45.455 8.96 0.0 0.00 3.59 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
33 34 8.675040 GCTAAGAGCAAAACCTATTGTTAAAG 57.325 34.615 0.00 0.00 41.89 1.85
34 35 8.512138 GCTAAGAGCAAAACCTATTGTTAAAGA 58.488 33.333 0.00 0.00 41.89 2.52
39 40 9.569167 GAGCAAAACCTATTGTTAAAGAATACC 57.431 33.333 0.00 0.00 35.67 2.73
40 41 9.084533 AGCAAAACCTATTGTTAAAGAATACCA 57.915 29.630 0.00 0.00 35.67 3.25
41 42 9.869757 GCAAAACCTATTGTTAAAGAATACCAT 57.130 29.630 0.00 0.00 35.67 3.55
61 62 6.866480 ACCATGTTATTCATCATTGTTGACC 58.134 36.000 0.00 0.00 33.85 4.02
62 63 6.664816 ACCATGTTATTCATCATTGTTGACCT 59.335 34.615 0.00 0.00 33.85 3.85
63 64 7.178983 ACCATGTTATTCATCATTGTTGACCTT 59.821 33.333 0.00 0.00 33.85 3.50
64 65 8.685427 CCATGTTATTCATCATTGTTGACCTTA 58.315 33.333 0.00 0.00 33.85 2.69
73 74 9.764363 TCATCATTGTTGACCTTATACTATCAC 57.236 33.333 0.00 0.00 33.85 3.06
74 75 9.546428 CATCATTGTTGACCTTATACTATCACA 57.454 33.333 0.00 0.00 33.85 3.58
79 80 9.599866 TTGTTGACCTTATACTATCACATTCAG 57.400 33.333 0.00 0.00 0.00 3.02
80 81 8.758829 TGTTGACCTTATACTATCACATTCAGT 58.241 33.333 0.00 0.00 0.00 3.41
92 93 3.708403 ACATTCAGTGAGATTGCCTGA 57.292 42.857 0.00 0.00 32.20 3.86
93 94 4.232188 ACATTCAGTGAGATTGCCTGAT 57.768 40.909 0.00 0.00 35.32 2.90
94 95 5.363562 ACATTCAGTGAGATTGCCTGATA 57.636 39.130 0.00 0.00 35.32 2.15
95 96 5.121811 ACATTCAGTGAGATTGCCTGATAC 58.878 41.667 0.00 0.00 35.32 2.24
96 97 5.104610 ACATTCAGTGAGATTGCCTGATACT 60.105 40.000 0.00 0.00 35.32 2.12
97 98 5.426689 TTCAGTGAGATTGCCTGATACTT 57.573 39.130 0.00 0.00 35.32 2.24
98 99 4.763073 TCAGTGAGATTGCCTGATACTTG 58.237 43.478 0.00 0.00 30.58 3.16
99 100 4.467438 TCAGTGAGATTGCCTGATACTTGA 59.533 41.667 0.00 0.00 30.58 3.02
100 101 5.129980 TCAGTGAGATTGCCTGATACTTGAT 59.870 40.000 0.00 0.00 30.58 2.57
101 102 5.821470 CAGTGAGATTGCCTGATACTTGATT 59.179 40.000 0.00 0.00 0.00 2.57
102 103 5.821470 AGTGAGATTGCCTGATACTTGATTG 59.179 40.000 0.00 0.00 0.00 2.67
103 104 5.587844 GTGAGATTGCCTGATACTTGATTGT 59.412 40.000 0.00 0.00 0.00 2.71
104 105 6.094603 GTGAGATTGCCTGATACTTGATTGTT 59.905 38.462 0.00 0.00 0.00 2.83
105 106 6.094464 TGAGATTGCCTGATACTTGATTGTTG 59.906 38.462 0.00 0.00 0.00 3.33
106 107 5.948162 AGATTGCCTGATACTTGATTGTTGT 59.052 36.000 0.00 0.00 0.00 3.32
107 108 5.375417 TTGCCTGATACTTGATTGTTGTG 57.625 39.130 0.00 0.00 0.00 3.33
108 109 4.397420 TGCCTGATACTTGATTGTTGTGT 58.603 39.130 0.00 0.00 0.00 3.72
109 110 4.826733 TGCCTGATACTTGATTGTTGTGTT 59.173 37.500 0.00 0.00 0.00 3.32
110 111 5.301551 TGCCTGATACTTGATTGTTGTGTTT 59.698 36.000 0.00 0.00 0.00 2.83
111 112 5.858581 GCCTGATACTTGATTGTTGTGTTTC 59.141 40.000 0.00 0.00 0.00 2.78
112 113 6.294176 GCCTGATACTTGATTGTTGTGTTTCT 60.294 38.462 0.00 0.00 0.00 2.52
113 114 7.094805 GCCTGATACTTGATTGTTGTGTTTCTA 60.095 37.037 0.00 0.00 0.00 2.10
114 115 8.230486 CCTGATACTTGATTGTTGTGTTTCTAC 58.770 37.037 0.00 0.00 0.00 2.59
115 116 8.902540 TGATACTTGATTGTTGTGTTTCTACT 57.097 30.769 0.00 0.00 0.00 2.57
116 117 9.337396 TGATACTTGATTGTTGTGTTTCTACTT 57.663 29.630 0.00 0.00 0.00 2.24
144 145 5.552870 ACACTTTGTGACTATCTTCCAGT 57.447 39.130 4.61 0.00 36.96 4.00
145 146 6.665992 ACACTTTGTGACTATCTTCCAGTA 57.334 37.500 4.61 0.00 36.96 2.74
146 147 6.692486 ACACTTTGTGACTATCTTCCAGTAG 58.308 40.000 4.61 0.00 36.96 2.57
147 148 6.102663 CACTTTGTGACTATCTTCCAGTAGG 58.897 44.000 0.00 0.00 35.23 3.18
148 149 6.017192 ACTTTGTGACTATCTTCCAGTAGGA 58.983 40.000 0.00 0.00 43.93 2.94
149 150 6.670027 ACTTTGTGACTATCTTCCAGTAGGAT 59.330 38.462 0.00 0.00 45.26 3.24
150 151 6.471233 TTGTGACTATCTTCCAGTAGGATG 57.529 41.667 0.00 0.00 45.26 3.51
151 152 5.519808 TGTGACTATCTTCCAGTAGGATGT 58.480 41.667 0.00 0.00 45.26 3.06
152 153 5.958380 TGTGACTATCTTCCAGTAGGATGTT 59.042 40.000 0.00 0.00 45.26 2.71
153 154 6.127338 TGTGACTATCTTCCAGTAGGATGTTG 60.127 42.308 0.00 0.00 45.26 3.33
154 155 5.958380 TGACTATCTTCCAGTAGGATGTTGT 59.042 40.000 0.00 0.00 45.26 3.32
155 156 6.440647 TGACTATCTTCCAGTAGGATGTTGTT 59.559 38.462 0.00 0.00 45.26 2.83
156 157 7.038302 TGACTATCTTCCAGTAGGATGTTGTTT 60.038 37.037 0.00 0.00 45.26 2.83
157 158 7.106239 ACTATCTTCCAGTAGGATGTTGTTTG 58.894 38.462 0.00 0.00 45.26 2.93
158 159 5.560722 TCTTCCAGTAGGATGTTGTTTGA 57.439 39.130 0.00 0.00 45.26 2.69
159 160 6.126863 TCTTCCAGTAGGATGTTGTTTGAT 57.873 37.500 0.00 0.00 45.26 2.57
160 161 6.173339 TCTTCCAGTAGGATGTTGTTTGATC 58.827 40.000 0.00 0.00 45.26 2.92
161 162 5.497464 TCCAGTAGGATGTTGTTTGATCA 57.503 39.130 0.00 0.00 39.61 2.92
162 163 5.875224 TCCAGTAGGATGTTGTTTGATCAA 58.125 37.500 3.38 3.38 39.61 2.57
163 164 5.939883 TCCAGTAGGATGTTGTTTGATCAAG 59.060 40.000 8.41 0.00 39.61 3.02
164 165 5.392380 CCAGTAGGATGTTGTTTGATCAAGC 60.392 44.000 14.76 14.76 36.89 4.01
165 166 5.413833 CAGTAGGATGTTGTTTGATCAAGCT 59.586 40.000 21.00 2.93 0.00 3.74
166 167 6.595326 CAGTAGGATGTTGTTTGATCAAGCTA 59.405 38.462 21.00 12.38 0.00 3.32
167 168 5.886960 AGGATGTTGTTTGATCAAGCTAC 57.113 39.130 23.04 23.04 0.00 3.58
168 169 5.564550 AGGATGTTGTTTGATCAAGCTACT 58.435 37.500 27.19 17.51 31.23 2.57
169 170 5.413833 AGGATGTTGTTTGATCAAGCTACTG 59.586 40.000 27.19 0.00 31.23 2.74
170 171 5.182001 GGATGTTGTTTGATCAAGCTACTGT 59.818 40.000 27.19 19.49 31.23 3.55
171 172 6.371548 GGATGTTGTTTGATCAAGCTACTGTA 59.628 38.462 27.19 14.60 31.23 2.74
172 173 6.785488 TGTTGTTTGATCAAGCTACTGTAG 57.215 37.500 27.19 10.48 31.23 2.74
173 174 6.288294 TGTTGTTTGATCAAGCTACTGTAGT 58.712 36.000 27.19 1.05 31.23 2.73
174 175 6.765989 TGTTGTTTGATCAAGCTACTGTAGTT 59.234 34.615 27.19 7.52 31.23 2.24
175 176 6.785488 TGTTTGATCAAGCTACTGTAGTTG 57.215 37.500 21.00 16.44 0.00 3.16
176 177 5.179368 TGTTTGATCAAGCTACTGTAGTTGC 59.821 40.000 21.00 9.87 44.91 4.17
177 178 4.535526 TGATCAAGCTACTGTAGTTGCA 57.464 40.909 17.97 9.99 46.50 4.08
178 179 4.245660 TGATCAAGCTACTGTAGTTGCAC 58.754 43.478 17.97 13.75 46.50 4.57
179 180 3.040147 TCAAGCTACTGTAGTTGCACC 57.960 47.619 17.97 0.00 46.50 5.01
180 181 2.076863 CAAGCTACTGTAGTTGCACCC 58.923 52.381 17.97 0.00 46.50 4.61
181 182 0.246635 AGCTACTGTAGTTGCACCCG 59.753 55.000 17.97 0.00 46.50 5.28
182 183 0.245539 GCTACTGTAGTTGCACCCGA 59.754 55.000 15.71 0.00 44.19 5.14
183 184 1.736032 GCTACTGTAGTTGCACCCGAG 60.736 57.143 15.71 0.00 44.19 4.63
184 185 1.816835 CTACTGTAGTTGCACCCGAGA 59.183 52.381 6.67 0.00 0.00 4.04
185 186 1.267121 ACTGTAGTTGCACCCGAGAT 58.733 50.000 0.00 0.00 0.00 2.75
186 187 1.066858 ACTGTAGTTGCACCCGAGATG 60.067 52.381 0.00 0.00 0.00 2.90
187 188 1.204704 CTGTAGTTGCACCCGAGATGA 59.795 52.381 0.00 0.00 0.00 2.92
188 189 1.204704 TGTAGTTGCACCCGAGATGAG 59.795 52.381 0.00 0.00 0.00 2.90
189 190 0.824109 TAGTTGCACCCGAGATGAGG 59.176 55.000 0.00 0.00 0.00 3.86
196 197 4.302622 CCGAGATGAGGGGATGGT 57.697 61.111 0.00 0.00 0.00 3.55
197 198 3.457560 CCGAGATGAGGGGATGGTA 57.542 57.895 0.00 0.00 0.00 3.25
198 199 1.717032 CCGAGATGAGGGGATGGTAA 58.283 55.000 0.00 0.00 0.00 2.85
199 200 2.047061 CCGAGATGAGGGGATGGTAAA 58.953 52.381 0.00 0.00 0.00 2.01
200 201 2.639839 CCGAGATGAGGGGATGGTAAAT 59.360 50.000 0.00 0.00 0.00 1.40
201 202 3.073062 CCGAGATGAGGGGATGGTAAATT 59.927 47.826 0.00 0.00 0.00 1.82
202 203 4.067896 CGAGATGAGGGGATGGTAAATTG 58.932 47.826 0.00 0.00 0.00 2.32
203 204 4.401925 GAGATGAGGGGATGGTAAATTGG 58.598 47.826 0.00 0.00 0.00 3.16
204 205 4.054369 AGATGAGGGGATGGTAAATTGGA 58.946 43.478 0.00 0.00 0.00 3.53
205 206 3.951563 TGAGGGGATGGTAAATTGGAG 57.048 47.619 0.00 0.00 0.00 3.86
206 207 3.469859 TGAGGGGATGGTAAATTGGAGA 58.530 45.455 0.00 0.00 0.00 3.71
207 208 4.054369 TGAGGGGATGGTAAATTGGAGAT 58.946 43.478 0.00 0.00 0.00 2.75
208 209 4.141181 TGAGGGGATGGTAAATTGGAGATG 60.141 45.833 0.00 0.00 0.00 2.90
209 210 2.893489 GGGGATGGTAAATTGGAGATGC 59.107 50.000 0.00 0.00 0.00 3.91
210 211 3.437052 GGGGATGGTAAATTGGAGATGCT 60.437 47.826 0.00 0.00 0.00 3.79
211 212 3.571401 GGGATGGTAAATTGGAGATGCTG 59.429 47.826 0.00 0.00 0.00 4.41
212 213 4.464008 GGATGGTAAATTGGAGATGCTGA 58.536 43.478 0.00 0.00 0.00 4.26
213 214 5.075493 GGATGGTAAATTGGAGATGCTGAT 58.925 41.667 0.00 0.00 0.00 2.90
214 215 5.537674 GGATGGTAAATTGGAGATGCTGATT 59.462 40.000 0.00 0.00 0.00 2.57
215 216 6.716628 GGATGGTAAATTGGAGATGCTGATTA 59.283 38.462 0.00 0.00 0.00 1.75
216 217 7.395489 GGATGGTAAATTGGAGATGCTGATTAT 59.605 37.037 0.00 0.00 0.00 1.28
217 218 9.453572 GATGGTAAATTGGAGATGCTGATTATA 57.546 33.333 0.00 0.00 0.00 0.98
218 219 9.812347 ATGGTAAATTGGAGATGCTGATTATAA 57.188 29.630 0.00 0.00 0.00 0.98
219 220 9.639563 TGGTAAATTGGAGATGCTGATTATAAA 57.360 29.630 0.00 0.00 0.00 1.40
251 252 8.970691 ACTGCTTACATATTGTTCATGAAAAC 57.029 30.769 10.35 0.00 0.00 2.43
252 253 8.575589 ACTGCTTACATATTGTTCATGAAAACA 58.424 29.630 10.35 2.50 37.37 2.83
253 254 9.577110 CTGCTTACATATTGTTCATGAAAACAT 57.423 29.630 10.35 5.21 38.83 2.71
254 255 9.571810 TGCTTACATATTGTTCATGAAAACATC 57.428 29.630 10.35 0.00 38.83 3.06
255 256 9.571810 GCTTACATATTGTTCATGAAAACATCA 57.428 29.630 10.35 0.21 43.67 3.07
308 309 7.631915 AAAAGTATCATTTACAAACGCCAAC 57.368 32.000 0.00 0.00 0.00 3.77
309 310 5.950758 AGTATCATTTACAAACGCCAACA 57.049 34.783 0.00 0.00 0.00 3.33
310 311 6.320494 AGTATCATTTACAAACGCCAACAA 57.680 33.333 0.00 0.00 0.00 2.83
311 312 6.919721 AGTATCATTTACAAACGCCAACAAT 58.080 32.000 0.00 0.00 0.00 2.71
312 313 7.027161 AGTATCATTTACAAACGCCAACAATC 58.973 34.615 0.00 0.00 0.00 2.67
313 314 5.188327 TCATTTACAAACGCCAACAATCA 57.812 34.783 0.00 0.00 0.00 2.57
314 315 5.777802 TCATTTACAAACGCCAACAATCAT 58.222 33.333 0.00 0.00 0.00 2.45
315 316 6.914259 TCATTTACAAACGCCAACAATCATA 58.086 32.000 0.00 0.00 0.00 2.15
316 317 7.542890 TCATTTACAAACGCCAACAATCATAT 58.457 30.769 0.00 0.00 0.00 1.78
317 318 7.700234 TCATTTACAAACGCCAACAATCATATC 59.300 33.333 0.00 0.00 0.00 1.63
318 319 4.014847 ACAAACGCCAACAATCATATCG 57.985 40.909 0.00 0.00 0.00 2.92
319 320 3.181501 ACAAACGCCAACAATCATATCGG 60.182 43.478 0.00 0.00 0.00 4.18
320 321 2.613026 ACGCCAACAATCATATCGGA 57.387 45.000 0.00 0.00 0.00 4.55
321 322 3.126001 ACGCCAACAATCATATCGGAT 57.874 42.857 0.00 0.00 0.00 4.18
322 323 2.807967 ACGCCAACAATCATATCGGATG 59.192 45.455 0.00 0.00 0.00 3.51
323 324 3.066380 CGCCAACAATCATATCGGATGA 58.934 45.455 0.00 3.80 0.00 2.92
324 325 3.120546 CGCCAACAATCATATCGGATGAC 60.121 47.826 0.00 0.00 0.00 3.06
325 326 4.067896 GCCAACAATCATATCGGATGACT 58.932 43.478 0.00 0.00 0.00 3.41
326 327 4.083643 GCCAACAATCATATCGGATGACTG 60.084 45.833 0.00 7.76 32.23 3.51
327 328 5.059161 CCAACAATCATATCGGATGACTGT 58.941 41.667 8.80 8.80 39.75 3.55
328 329 5.528690 CCAACAATCATATCGGATGACTGTT 59.471 40.000 16.94 16.94 45.56 3.16
329 330 6.038603 CCAACAATCATATCGGATGACTGTTT 59.961 38.462 18.90 7.81 43.23 2.83
330 331 7.415541 CCAACAATCATATCGGATGACTGTTTT 60.416 37.037 18.90 4.22 43.23 2.43
331 332 7.251704 ACAATCATATCGGATGACTGTTTTC 57.748 36.000 8.80 0.00 35.30 2.29
332 333 6.260936 ACAATCATATCGGATGACTGTTTTCC 59.739 38.462 8.80 1.11 35.30 3.13
333 334 5.614324 TCATATCGGATGACTGTTTTCCT 57.386 39.130 0.00 0.00 0.00 3.36
334 335 5.359756 TCATATCGGATGACTGTTTTCCTG 58.640 41.667 0.00 1.51 0.00 3.86
335 336 2.472695 TCGGATGACTGTTTTCCTGG 57.527 50.000 7.94 0.00 0.00 4.45
336 337 0.804989 CGGATGACTGTTTTCCTGGC 59.195 55.000 7.94 0.00 0.00 4.85
337 338 1.177401 GGATGACTGTTTTCCTGGCC 58.823 55.000 0.00 0.00 0.00 5.36
338 339 1.272147 GGATGACTGTTTTCCTGGCCT 60.272 52.381 3.32 0.00 0.00 5.19
339 340 2.519013 GATGACTGTTTTCCTGGCCTT 58.481 47.619 3.32 0.00 0.00 4.35
340 341 1.981256 TGACTGTTTTCCTGGCCTTC 58.019 50.000 3.32 0.00 0.00 3.46
341 342 1.214175 TGACTGTTTTCCTGGCCTTCA 59.786 47.619 3.32 0.00 0.00 3.02
342 343 2.306847 GACTGTTTTCCTGGCCTTCAA 58.693 47.619 3.32 0.00 0.00 2.69
343 344 2.693074 GACTGTTTTCCTGGCCTTCAAA 59.307 45.455 3.32 0.00 0.00 2.69
344 345 2.695147 ACTGTTTTCCTGGCCTTCAAAG 59.305 45.455 3.32 0.00 0.00 2.77
345 346 2.958355 CTGTTTTCCTGGCCTTCAAAGA 59.042 45.455 3.32 0.00 0.00 2.52
346 347 3.370104 TGTTTTCCTGGCCTTCAAAGAA 58.630 40.909 3.32 0.00 0.00 2.52
347 348 3.384467 TGTTTTCCTGGCCTTCAAAGAAG 59.616 43.478 3.32 0.00 0.00 2.85
348 349 3.593442 TTTCCTGGCCTTCAAAGAAGA 57.407 42.857 3.32 0.00 0.00 2.87
349 350 3.593442 TTCCTGGCCTTCAAAGAAGAA 57.407 42.857 3.32 0.00 0.00 2.52
350 351 3.593442 TCCTGGCCTTCAAAGAAGAAA 57.407 42.857 3.32 0.00 0.00 2.52
351 352 4.118168 TCCTGGCCTTCAAAGAAGAAAT 57.882 40.909 3.32 0.00 0.00 2.17
352 353 5.255397 TCCTGGCCTTCAAAGAAGAAATA 57.745 39.130 3.32 0.00 0.00 1.40
353 354 5.831103 TCCTGGCCTTCAAAGAAGAAATAT 58.169 37.500 3.32 0.00 0.00 1.28
354 355 5.888161 TCCTGGCCTTCAAAGAAGAAATATC 59.112 40.000 3.32 0.00 0.00 1.63
355 356 5.653769 CCTGGCCTTCAAAGAAGAAATATCA 59.346 40.000 3.32 0.00 0.00 2.15
356 357 6.323225 CCTGGCCTTCAAAGAAGAAATATCAT 59.677 38.462 3.32 0.00 0.00 2.45
357 358 7.503566 CCTGGCCTTCAAAGAAGAAATATCATA 59.496 37.037 3.32 0.00 0.00 2.15
358 359 8.821686 TGGCCTTCAAAGAAGAAATATCATAA 57.178 30.769 3.32 0.00 0.00 1.90
359 360 9.253832 TGGCCTTCAAAGAAGAAATATCATAAA 57.746 29.630 3.32 0.00 0.00 1.40
370 371 9.503427 GAAGAAATATCATAAAAGTTGAACCCG 57.497 33.333 0.00 0.00 0.00 5.28
371 372 7.996385 AGAAATATCATAAAAGTTGAACCCGG 58.004 34.615 0.00 0.00 0.00 5.73
372 373 5.767816 ATATCATAAAAGTTGAACCCGGC 57.232 39.130 0.00 0.00 0.00 6.13
373 374 3.149005 TCATAAAAGTTGAACCCGGCT 57.851 42.857 0.00 0.00 0.00 5.52
374 375 2.817258 TCATAAAAGTTGAACCCGGCTG 59.183 45.455 0.00 0.00 0.00 4.85
375 376 1.611519 TAAAAGTTGAACCCGGCTGG 58.388 50.000 3.88 3.88 41.37 4.85
376 377 0.106419 AAAAGTTGAACCCGGCTGGA 60.106 50.000 15.09 0.00 37.49 3.86
377 378 0.537371 AAAGTTGAACCCGGCTGGAG 60.537 55.000 15.09 5.75 37.49 3.86
378 379 2.359975 GTTGAACCCGGCTGGAGG 60.360 66.667 15.09 0.00 37.49 4.30
387 388 3.424105 GGCTGGAGGGGCCTCAAT 61.424 66.667 4.79 0.00 45.57 2.57
388 389 2.685999 GCTGGAGGGGCCTCAATT 59.314 61.111 4.79 0.00 44.40 2.32
389 390 1.454663 GCTGGAGGGGCCTCAATTC 60.455 63.158 4.79 0.00 44.40 2.17
390 391 1.931007 GCTGGAGGGGCCTCAATTCT 61.931 60.000 4.79 0.00 44.40 2.40
391 392 0.627986 CTGGAGGGGCCTCAATTCTT 59.372 55.000 4.79 0.00 44.40 2.52
392 393 0.625849 TGGAGGGGCCTCAATTCTTC 59.374 55.000 4.79 0.00 44.40 2.87
393 394 0.922626 GGAGGGGCCTCAATTCTTCT 59.077 55.000 4.79 0.00 44.40 2.85
394 395 1.409381 GGAGGGGCCTCAATTCTTCTG 60.409 57.143 4.79 0.00 44.40 3.02
395 396 1.561542 GAGGGGCCTCAATTCTTCTGA 59.438 52.381 4.79 0.00 42.31 3.27
396 397 1.563410 AGGGGCCTCAATTCTTCTGAG 59.437 52.381 4.79 0.00 40.08 3.35
404 405 5.954296 CTCAATTCTTCTGAGGCAAGAAA 57.046 39.130 1.18 0.00 41.94 2.52
405 406 6.323203 CTCAATTCTTCTGAGGCAAGAAAA 57.677 37.500 1.18 2.49 41.94 2.29
406 407 6.323203 TCAATTCTTCTGAGGCAAGAAAAG 57.677 37.500 1.18 0.00 41.94 2.27
407 408 5.829924 TCAATTCTTCTGAGGCAAGAAAAGT 59.170 36.000 1.18 0.00 41.94 2.66
408 409 6.998074 TCAATTCTTCTGAGGCAAGAAAAGTA 59.002 34.615 1.18 0.00 41.94 2.24
409 410 7.173907 TCAATTCTTCTGAGGCAAGAAAAGTAG 59.826 37.037 1.18 0.00 41.94 2.57
410 411 4.899502 TCTTCTGAGGCAAGAAAAGTAGG 58.100 43.478 4.50 0.00 35.79 3.18
411 412 4.348168 TCTTCTGAGGCAAGAAAAGTAGGT 59.652 41.667 4.50 0.00 35.79 3.08
412 413 4.008074 TCTGAGGCAAGAAAAGTAGGTG 57.992 45.455 0.00 0.00 0.00 4.00
413 414 3.646162 TCTGAGGCAAGAAAAGTAGGTGA 59.354 43.478 0.00 0.00 0.00 4.02
414 415 3.999663 CTGAGGCAAGAAAAGTAGGTGAG 59.000 47.826 0.00 0.00 0.00 3.51
415 416 3.646162 TGAGGCAAGAAAAGTAGGTGAGA 59.354 43.478 0.00 0.00 0.00 3.27
416 417 4.287067 TGAGGCAAGAAAAGTAGGTGAGAT 59.713 41.667 0.00 0.00 0.00 2.75
417 418 4.837972 AGGCAAGAAAAGTAGGTGAGATC 58.162 43.478 0.00 0.00 0.00 2.75
418 419 4.534103 AGGCAAGAAAAGTAGGTGAGATCT 59.466 41.667 0.00 0.00 0.00 2.75
419 420 4.633565 GGCAAGAAAAGTAGGTGAGATCTG 59.366 45.833 0.00 0.00 0.00 2.90
420 421 5.241662 GCAAGAAAAGTAGGTGAGATCTGT 58.758 41.667 0.00 0.00 0.00 3.41
421 422 5.121454 GCAAGAAAAGTAGGTGAGATCTGTG 59.879 44.000 0.00 0.00 0.00 3.66
422 423 4.826556 AGAAAAGTAGGTGAGATCTGTGC 58.173 43.478 0.00 0.00 0.00 4.57
423 424 4.284490 AGAAAAGTAGGTGAGATCTGTGCA 59.716 41.667 0.00 0.00 0.00 4.57
424 425 4.623932 AAAGTAGGTGAGATCTGTGCAA 57.376 40.909 0.00 0.00 0.00 4.08
425 426 4.623932 AAGTAGGTGAGATCTGTGCAAA 57.376 40.909 0.00 0.00 0.00 3.68
426 427 4.623932 AGTAGGTGAGATCTGTGCAAAA 57.376 40.909 0.00 0.00 0.00 2.44
427 428 5.171339 AGTAGGTGAGATCTGTGCAAAAT 57.829 39.130 0.00 0.00 0.00 1.82
428 429 5.181748 AGTAGGTGAGATCTGTGCAAAATC 58.818 41.667 0.00 0.00 0.00 2.17
429 430 4.298103 AGGTGAGATCTGTGCAAAATCT 57.702 40.909 0.00 6.47 0.00 2.40
430 431 4.660168 AGGTGAGATCTGTGCAAAATCTT 58.340 39.130 0.00 0.00 0.00 2.40
431 432 5.075493 AGGTGAGATCTGTGCAAAATCTTT 58.925 37.500 0.00 0.00 0.00 2.52
432 433 5.537674 AGGTGAGATCTGTGCAAAATCTTTT 59.462 36.000 0.00 0.00 0.00 2.27
452 453 8.824159 TCTTTTGAGCTATGAATAGTAGATGC 57.176 34.615 0.00 0.00 32.96 3.91
453 454 7.596621 TCTTTTGAGCTATGAATAGTAGATGCG 59.403 37.037 0.00 0.00 32.96 4.73
454 455 6.575162 TTGAGCTATGAATAGTAGATGCGA 57.425 37.500 0.00 0.00 32.96 5.10
455 456 6.575162 TGAGCTATGAATAGTAGATGCGAA 57.425 37.500 0.00 0.00 32.96 4.70
456 457 6.981722 TGAGCTATGAATAGTAGATGCGAAA 58.018 36.000 0.00 0.00 32.96 3.46
457 458 7.606349 TGAGCTATGAATAGTAGATGCGAAAT 58.394 34.615 0.00 0.00 32.96 2.17
458 459 7.543520 TGAGCTATGAATAGTAGATGCGAAATG 59.456 37.037 0.00 0.00 32.96 2.32
459 460 6.312426 AGCTATGAATAGTAGATGCGAAATGC 59.688 38.462 0.00 0.00 37.09 3.56
460 461 6.312426 GCTATGAATAGTAGATGCGAAATGCT 59.688 38.462 0.00 0.00 37.30 3.79
461 462 7.148507 GCTATGAATAGTAGATGCGAAATGCTT 60.149 37.037 0.00 0.00 37.30 3.91
462 463 9.358872 CTATGAATAGTAGATGCGAAATGCTTA 57.641 33.333 0.00 0.00 46.63 3.09
463 464 8.607441 ATGAATAGTAGATGCGAAATGCTTAA 57.393 30.769 0.00 0.00 46.63 1.85
464 465 8.432110 TGAATAGTAGATGCGAAATGCTTAAA 57.568 30.769 0.00 0.00 46.63 1.52
465 466 8.888716 TGAATAGTAGATGCGAAATGCTTAAAA 58.111 29.630 0.00 0.00 46.63 1.52
466 467 9.716507 GAATAGTAGATGCGAAATGCTTAAAAA 57.283 29.630 0.00 0.00 46.63 1.94
484 485 4.817318 AAAAAGGCAAAGGTTCACTGAA 57.183 36.364 0.00 0.00 0.00 3.02
485 486 3.801114 AAAGGCAAAGGTTCACTGAAC 57.199 42.857 12.81 12.81 41.32 3.18
486 487 2.435372 AGGCAAAGGTTCACTGAACA 57.565 45.000 20.94 0.00 43.54 3.18
487 488 2.949447 AGGCAAAGGTTCACTGAACAT 58.051 42.857 20.94 13.06 43.54 2.71
488 489 4.098914 AGGCAAAGGTTCACTGAACATA 57.901 40.909 20.94 0.00 43.54 2.29
489 490 4.469657 AGGCAAAGGTTCACTGAACATAA 58.530 39.130 20.94 0.00 43.54 1.90
490 491 4.892934 AGGCAAAGGTTCACTGAACATAAA 59.107 37.500 20.94 0.00 43.54 1.40
491 492 5.539955 AGGCAAAGGTTCACTGAACATAAAT 59.460 36.000 20.94 4.43 43.54 1.40
492 493 5.634859 GGCAAAGGTTCACTGAACATAAATG 59.365 40.000 20.94 14.95 43.54 2.32
493 494 5.119125 GCAAAGGTTCACTGAACATAAATGC 59.881 40.000 20.94 19.33 43.54 3.56
494 495 5.391312 AAGGTTCACTGAACATAAATGCC 57.609 39.130 20.94 3.93 43.54 4.40
495 496 4.666512 AGGTTCACTGAACATAAATGCCT 58.333 39.130 20.94 5.99 43.54 4.75
496 497 5.815581 AGGTTCACTGAACATAAATGCCTA 58.184 37.500 20.94 0.00 43.54 3.93
497 498 6.245408 AGGTTCACTGAACATAAATGCCTAA 58.755 36.000 20.94 0.00 43.54 2.69
498 499 6.719370 AGGTTCACTGAACATAAATGCCTAAA 59.281 34.615 20.94 0.00 43.54 1.85
499 500 7.397192 AGGTTCACTGAACATAAATGCCTAAAT 59.603 33.333 20.94 0.00 43.54 1.40
536 537 2.603110 TCATGTTCGATTCAGCTAACGC 59.397 45.455 0.00 0.00 0.00 4.84
550 551 2.911102 GCTAACGCTGCTTGTCAAATTC 59.089 45.455 0.00 0.00 0.00 2.17
597 598 7.798071 ACTCGTGGGGAATTACTTCAATAATA 58.202 34.615 0.00 0.00 32.70 0.98
598 599 8.269317 ACTCGTGGGGAATTACTTCAATAATAA 58.731 33.333 0.00 0.00 32.70 1.40
599 600 9.284968 CTCGTGGGGAATTACTTCAATAATAAT 57.715 33.333 0.00 0.00 32.70 1.28
620 621 4.123497 TCAATACGTTGACCCTCATCTG 57.877 45.455 0.00 0.00 39.36 2.90
645 646 5.968528 AAAATGACCTACGTATTGCCAAA 57.031 34.783 0.00 0.00 0.00 3.28
658 659 6.589907 ACGTATTGCCAAATTGAATTTCCTTC 59.410 34.615 0.00 0.00 0.00 3.46
659 660 6.813152 CGTATTGCCAAATTGAATTTCCTTCT 59.187 34.615 0.00 0.00 34.75 2.85
660 661 7.201461 CGTATTGCCAAATTGAATTTCCTTCTG 60.201 37.037 0.00 0.00 34.75 3.02
661 662 5.804944 TGCCAAATTGAATTTCCTTCTGA 57.195 34.783 0.00 0.00 34.75 3.27
662 663 6.363167 TGCCAAATTGAATTTCCTTCTGAT 57.637 33.333 0.00 0.00 34.75 2.90
663 664 6.771573 TGCCAAATTGAATTTCCTTCTGATT 58.228 32.000 0.00 0.00 34.75 2.57
664 665 7.225725 TGCCAAATTGAATTTCCTTCTGATTT 58.774 30.769 0.00 0.00 34.01 2.17
665 666 7.173562 TGCCAAATTGAATTTCCTTCTGATTTG 59.826 33.333 0.00 13.92 41.48 2.32
666 667 7.524065 CCAAATTGAATTTCCTTCTGATTTGC 58.476 34.615 0.00 0.00 41.09 3.68
667 668 7.389607 CCAAATTGAATTTCCTTCTGATTTGCT 59.610 33.333 0.00 0.00 41.09 3.91
668 669 9.426837 CAAATTGAATTTCCTTCTGATTTGCTA 57.573 29.630 0.00 0.00 39.00 3.49
702 709 8.470805 AGTGAGGCTCCGTCATATAAATAATAG 58.529 37.037 12.86 0.00 0.00 1.73
760 769 1.169577 GAGAGCACTTCCGTGAGAGA 58.830 55.000 0.00 0.00 43.97 3.10
878 898 3.419759 CTTTCGCCGAACCACCCG 61.420 66.667 0.00 0.00 0.00 5.28
889 909 0.464916 AACCACCCGAAACTCCACAC 60.465 55.000 0.00 0.00 0.00 3.82
890 910 1.599797 CCACCCGAAACTCCACACC 60.600 63.158 0.00 0.00 0.00 4.16
918 940 4.470876 GACCGATCGACGAAGCAA 57.529 55.556 18.66 0.00 45.77 3.91
981 1015 2.427360 CGCCGTTATATAAGCGCGT 58.573 52.632 20.35 0.00 42.31 6.01
1015 1050 3.631686 CCAGACCTCACAAACACATCAAA 59.368 43.478 0.00 0.00 0.00 2.69
1042 1081 6.215121 AGCAACATATTCTCGAGAGATTCTG 58.785 40.000 15.94 12.00 40.84 3.02
1043 1082 6.040278 AGCAACATATTCTCGAGAGATTCTGA 59.960 38.462 15.94 0.00 40.84 3.27
1044 1083 6.363088 GCAACATATTCTCGAGAGATTCTGAG 59.637 42.308 15.94 5.26 40.84 3.35
1045 1084 7.424803 CAACATATTCTCGAGAGATTCTGAGT 58.575 38.462 15.94 5.12 40.84 3.41
1046 1085 6.969366 ACATATTCTCGAGAGATTCTGAGTG 58.031 40.000 15.94 8.06 40.84 3.51
1052 1091 4.468713 TCGAGAGATTCTGAGTGGATCAT 58.531 43.478 0.00 0.00 33.72 2.45
1056 1095 6.461370 CGAGAGATTCTGAGTGGATCATTCTT 60.461 42.308 0.00 0.00 37.28 2.52
1057 1096 7.255416 CGAGAGATTCTGAGTGGATCATTCTTA 60.255 40.741 0.00 0.00 37.28 2.10
1058 1097 8.495160 AGAGATTCTGAGTGGATCATTCTTAT 57.505 34.615 0.00 0.00 37.28 1.73
1097 1145 0.109597 CTTGGTGAATTCGCTGGTGC 60.110 55.000 18.02 2.44 0.00 5.01
1130 1192 2.107141 CGGGAGTCGGAATGGAGC 59.893 66.667 0.00 0.00 34.75 4.70
1254 1316 2.352805 CACCAAGACCCTCTGCCC 59.647 66.667 0.00 0.00 0.00 5.36
1255 1317 2.208349 ACCAAGACCCTCTGCCCT 59.792 61.111 0.00 0.00 0.00 5.19
1394 1468 4.722700 CCCACGCCCACCAGAAGG 62.723 72.222 0.00 0.00 42.21 3.46
1410 1484 2.766828 AGAAGGAGGATTAGTTGACCGG 59.233 50.000 0.00 0.00 0.00 5.28
1411 1485 2.544844 AGGAGGATTAGTTGACCGGA 57.455 50.000 9.46 0.00 0.00 5.14
1413 1487 1.138464 GGAGGATTAGTTGACCGGACC 59.862 57.143 9.46 0.00 0.00 4.46
1414 1488 1.829222 GAGGATTAGTTGACCGGACCA 59.171 52.381 9.46 2.07 0.00 4.02
1415 1489 1.553704 AGGATTAGTTGACCGGACCAC 59.446 52.381 9.46 3.67 0.00 4.16
1416 1490 1.636988 GATTAGTTGACCGGACCACG 58.363 55.000 9.46 0.00 43.80 4.94
1463 1537 1.835927 GCTGGGGGAGGCAGCTATAG 61.836 65.000 0.00 0.00 38.77 1.31
1466 1540 0.178918 GGGGGAGGCAGCTATAGAGT 60.179 60.000 3.21 0.00 0.00 3.24
1704 1786 5.984627 TGTGATGAACATAACACTCGTTTG 58.015 37.500 1.25 0.00 33.21 2.93
1897 1979 7.117523 CCATATCATGAAATCTTCGGTCTCTTC 59.882 40.741 0.00 0.00 0.00 2.87
2033 2115 1.444836 TTCTTATTGTGGTTCGGCCG 58.555 50.000 22.12 22.12 41.21 6.13
2308 2398 7.297936 TGATGACCTAAAGTGTCTTTGAGTA 57.702 36.000 5.19 0.00 33.83 2.59
2319 2409 8.874744 AAGTGTCTTTGAGTACCTAGTATACA 57.125 34.615 5.50 0.00 0.00 2.29
2376 2466 5.957842 ATTGATTGGCGTGTTCTTTCTAA 57.042 34.783 0.00 0.00 0.00 2.10
2627 2717 6.263168 CCCACCATGAATAACAATAGGAAGAC 59.737 42.308 0.00 0.00 0.00 3.01
2630 2720 9.559732 CACCATGAATAACAATAGGAAGACATA 57.440 33.333 0.00 0.00 0.00 2.29
2665 2755 0.961857 ATGTGCGGAAGATTGCAGCA 60.962 50.000 0.00 0.00 42.68 4.41
2678 2768 3.685836 TTGCAGCATCGATGAATTCAG 57.314 42.857 29.20 8.98 0.00 3.02
2712 2802 1.342819 GCTCCGCTAACCTCATCTCAT 59.657 52.381 0.00 0.00 0.00 2.90
2714 2804 2.625314 CTCCGCTAACCTCATCTCATCA 59.375 50.000 0.00 0.00 0.00 3.07
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
3 4 8.666194 AACAATAGGTTTTGCTCTTAGCATGGT 61.666 37.037 1.62 1.62 41.07 3.55
4 5 6.350445 AACAATAGGTTTTGCTCTTAGCATGG 60.350 38.462 1.88 0.00 41.07 3.66
6 7 6.840780 AACAATAGGTTTTGCTCTTAGCAT 57.159 33.333 1.88 0.00 41.07 3.79
7 8 7.753309 TTAACAATAGGTTTTGCTCTTAGCA 57.247 32.000 0.00 0.00 44.46 3.49
13 14 9.569167 GGTATTCTTTAACAATAGGTTTTGCTC 57.431 33.333 0.00 0.00 40.96 4.26
14 15 9.084533 TGGTATTCTTTAACAATAGGTTTTGCT 57.915 29.630 0.00 0.00 40.96 3.91
15 16 9.869757 ATGGTATTCTTTAACAATAGGTTTTGC 57.130 29.630 0.00 0.00 40.96 3.68
35 36 8.632679 GGTCAACAATGATGAATAACATGGTAT 58.367 33.333 0.00 0.00 39.56 2.73
36 37 7.833682 AGGTCAACAATGATGAATAACATGGTA 59.166 33.333 0.00 0.00 39.56 3.25
37 38 6.664816 AGGTCAACAATGATGAATAACATGGT 59.335 34.615 0.00 0.00 39.56 3.55
38 39 7.104043 AGGTCAACAATGATGAATAACATGG 57.896 36.000 0.00 0.00 39.56 3.66
47 48 9.764363 GTGATAGTATAAGGTCAACAATGATGA 57.236 33.333 0.00 0.00 38.01 2.92
48 49 9.546428 TGTGATAGTATAAGGTCAACAATGATG 57.454 33.333 0.00 0.00 38.01 3.07
53 54 9.599866 CTGAATGTGATAGTATAAGGTCAACAA 57.400 33.333 0.00 0.00 0.00 2.83
54 55 8.758829 ACTGAATGTGATAGTATAAGGTCAACA 58.241 33.333 0.00 0.00 0.00 3.33
71 72 3.945921 ATCAGGCAATCTCACTGAATGTG 59.054 43.478 0.00 0.00 43.65 3.21
72 73 3.708403 TCAGGCAATCTCACTGAATGT 57.292 42.857 0.00 0.00 38.22 2.71
73 74 5.366460 AGTATCAGGCAATCTCACTGAATG 58.634 41.667 0.00 0.00 43.65 2.67
74 75 5.627182 AGTATCAGGCAATCTCACTGAAT 57.373 39.130 0.00 0.00 43.65 2.57
75 76 5.046376 TCAAGTATCAGGCAATCTCACTGAA 60.046 40.000 0.00 0.00 43.65 3.02
76 77 4.467438 TCAAGTATCAGGCAATCTCACTGA 59.533 41.667 0.00 0.00 44.44 3.41
77 78 4.763073 TCAAGTATCAGGCAATCTCACTG 58.237 43.478 0.00 0.00 0.00 3.66
78 79 5.627182 ATCAAGTATCAGGCAATCTCACT 57.373 39.130 0.00 0.00 0.00 3.41
79 80 5.587844 ACAATCAAGTATCAGGCAATCTCAC 59.412 40.000 0.00 0.00 0.00 3.51
80 81 5.748402 ACAATCAAGTATCAGGCAATCTCA 58.252 37.500 0.00 0.00 0.00 3.27
81 82 6.094603 ACAACAATCAAGTATCAGGCAATCTC 59.905 38.462 0.00 0.00 0.00 2.75
82 83 5.948162 ACAACAATCAAGTATCAGGCAATCT 59.052 36.000 0.00 0.00 0.00 2.40
83 84 6.032094 CACAACAATCAAGTATCAGGCAATC 58.968 40.000 0.00 0.00 0.00 2.67
84 85 5.477984 ACACAACAATCAAGTATCAGGCAAT 59.522 36.000 0.00 0.00 0.00 3.56
85 86 4.826733 ACACAACAATCAAGTATCAGGCAA 59.173 37.500 0.00 0.00 0.00 4.52
86 87 4.397420 ACACAACAATCAAGTATCAGGCA 58.603 39.130 0.00 0.00 0.00 4.75
87 88 5.376854 AACACAACAATCAAGTATCAGGC 57.623 39.130 0.00 0.00 0.00 4.85
88 89 7.206981 AGAAACACAACAATCAAGTATCAGG 57.793 36.000 0.00 0.00 0.00 3.86
89 90 8.993121 AGTAGAAACACAACAATCAAGTATCAG 58.007 33.333 0.00 0.00 0.00 2.90
90 91 8.902540 AGTAGAAACACAACAATCAAGTATCA 57.097 30.769 0.00 0.00 0.00 2.15
106 107 8.958175 CACAAAGTGTGTTTTAAGTAGAAACA 57.042 30.769 0.09 0.00 43.08 2.83
117 118 7.201732 CTGGAAGATAGTCACAAAGTGTGTTTT 60.202 37.037 8.16 0.00 42.75 2.43
118 119 6.260936 CTGGAAGATAGTCACAAAGTGTGTTT 59.739 38.462 8.16 1.49 42.75 2.83
119 120 5.760253 CTGGAAGATAGTCACAAAGTGTGTT 59.240 40.000 8.16 1.81 42.75 3.32
120 121 5.163301 ACTGGAAGATAGTCACAAAGTGTGT 60.163 40.000 8.16 0.00 42.97 3.72
121 122 5.300752 ACTGGAAGATAGTCACAAAGTGTG 58.699 41.667 1.86 1.86 43.49 3.82
122 123 5.552870 ACTGGAAGATAGTCACAAAGTGT 57.447 39.130 0.00 0.00 37.43 3.55
123 124 6.071334 TCCTACTGGAAGATAGTCACAAAGTG 60.071 42.308 0.00 0.00 39.87 3.16
124 125 6.017192 TCCTACTGGAAGATAGTCACAAAGT 58.983 40.000 0.00 0.00 39.87 2.66
125 126 6.531503 TCCTACTGGAAGATAGTCACAAAG 57.468 41.667 0.00 0.00 39.87 2.77
126 127 6.440647 ACATCCTACTGGAAGATAGTCACAAA 59.559 38.462 0.00 0.00 46.80 2.83
127 128 5.958380 ACATCCTACTGGAAGATAGTCACAA 59.042 40.000 0.00 0.00 46.80 3.33
128 129 5.519808 ACATCCTACTGGAAGATAGTCACA 58.480 41.667 0.00 0.00 46.80 3.58
129 130 6.127310 ACAACATCCTACTGGAAGATAGTCAC 60.127 42.308 0.00 0.00 46.80 3.67
130 131 5.958380 ACAACATCCTACTGGAAGATAGTCA 59.042 40.000 0.00 0.00 46.80 3.41
131 132 6.472686 ACAACATCCTACTGGAAGATAGTC 57.527 41.667 0.00 0.00 46.80 2.59
132 133 6.875972 AACAACATCCTACTGGAAGATAGT 57.124 37.500 0.00 0.00 46.80 2.12
133 134 7.331026 TCAAACAACATCCTACTGGAAGATAG 58.669 38.462 0.00 0.00 46.80 2.08
134 135 7.252612 TCAAACAACATCCTACTGGAAGATA 57.747 36.000 0.00 0.00 46.80 1.98
135 136 6.126863 TCAAACAACATCCTACTGGAAGAT 57.873 37.500 0.00 0.00 46.80 2.40
136 137 5.560722 TCAAACAACATCCTACTGGAAGA 57.439 39.130 0.00 0.00 46.80 2.87
137 138 5.939883 TGATCAAACAACATCCTACTGGAAG 59.060 40.000 0.00 0.00 46.80 3.46
138 139 5.875224 TGATCAAACAACATCCTACTGGAA 58.125 37.500 0.00 0.00 46.80 3.53
140 141 5.392380 GCTTGATCAAACAACATCCTACTGG 60.392 44.000 9.88 0.00 0.00 4.00
141 142 5.413833 AGCTTGATCAAACAACATCCTACTG 59.586 40.000 9.88 0.00 0.00 2.74
142 143 5.564550 AGCTTGATCAAACAACATCCTACT 58.435 37.500 9.88 0.00 0.00 2.57
143 144 5.886960 AGCTTGATCAAACAACATCCTAC 57.113 39.130 9.88 0.00 0.00 3.18
144 145 6.595326 CAGTAGCTTGATCAAACAACATCCTA 59.405 38.462 9.88 0.00 0.00 2.94
145 146 5.413833 CAGTAGCTTGATCAAACAACATCCT 59.586 40.000 9.88 0.00 0.00 3.24
146 147 5.182001 ACAGTAGCTTGATCAAACAACATCC 59.818 40.000 9.88 0.00 0.00 3.51
147 148 6.246420 ACAGTAGCTTGATCAAACAACATC 57.754 37.500 9.88 0.00 0.00 3.06
148 149 6.936900 ACTACAGTAGCTTGATCAAACAACAT 59.063 34.615 9.88 3.47 0.00 2.71
149 150 6.288294 ACTACAGTAGCTTGATCAAACAACA 58.712 36.000 9.88 0.00 0.00 3.33
150 151 6.787085 ACTACAGTAGCTTGATCAAACAAC 57.213 37.500 9.88 7.49 0.00 3.32
151 152 6.293407 GCAACTACAGTAGCTTGATCAAACAA 60.293 38.462 19.18 0.00 0.00 2.83
152 153 5.179368 GCAACTACAGTAGCTTGATCAAACA 59.821 40.000 19.18 0.00 0.00 2.83
153 154 5.179368 TGCAACTACAGTAGCTTGATCAAAC 59.821 40.000 19.18 5.05 0.00 2.93
154 155 5.179368 GTGCAACTACAGTAGCTTGATCAAA 59.821 40.000 19.18 0.00 0.00 2.69
155 156 4.690748 GTGCAACTACAGTAGCTTGATCAA 59.309 41.667 19.18 8.12 0.00 2.57
156 157 4.245660 GTGCAACTACAGTAGCTTGATCA 58.754 43.478 19.18 0.00 0.00 2.92
157 158 3.619038 GGTGCAACTACAGTAGCTTGATC 59.381 47.826 19.18 13.06 36.74 2.92
158 159 3.600388 GGTGCAACTACAGTAGCTTGAT 58.400 45.455 19.18 0.00 36.74 2.57
159 160 2.289444 GGGTGCAACTACAGTAGCTTGA 60.289 50.000 19.18 8.05 36.74 3.02
160 161 2.076863 GGGTGCAACTACAGTAGCTTG 58.923 52.381 7.57 11.69 36.74 4.01
161 162 1.337823 CGGGTGCAACTACAGTAGCTT 60.338 52.381 7.57 0.00 36.74 3.74
162 163 0.246635 CGGGTGCAACTACAGTAGCT 59.753 55.000 7.57 0.00 36.74 3.32
163 164 0.245539 TCGGGTGCAACTACAGTAGC 59.754 55.000 7.57 0.00 36.74 3.58
164 165 1.816835 TCTCGGGTGCAACTACAGTAG 59.183 52.381 0.00 6.00 36.74 2.57
165 166 1.913778 TCTCGGGTGCAACTACAGTA 58.086 50.000 0.00 0.00 36.74 2.74
166 167 1.066858 CATCTCGGGTGCAACTACAGT 60.067 52.381 0.00 0.00 36.74 3.55
167 168 1.204704 TCATCTCGGGTGCAACTACAG 59.795 52.381 0.00 0.00 36.74 2.74
168 169 1.204704 CTCATCTCGGGTGCAACTACA 59.795 52.381 0.00 0.00 36.74 2.74
169 170 1.471676 CCTCATCTCGGGTGCAACTAC 60.472 57.143 0.00 0.00 36.74 2.73
170 171 0.824109 CCTCATCTCGGGTGCAACTA 59.176 55.000 0.00 0.00 36.74 2.24
171 172 1.599047 CCTCATCTCGGGTGCAACT 59.401 57.895 0.00 0.00 36.74 3.16
172 173 1.450312 CCCTCATCTCGGGTGCAAC 60.450 63.158 0.00 0.00 36.91 4.17
173 174 2.669133 CCCCTCATCTCGGGTGCAA 61.669 63.158 0.00 0.00 40.24 4.08
174 175 2.896677 ATCCCCTCATCTCGGGTGCA 62.897 60.000 0.00 0.00 40.24 4.57
175 176 2.143419 ATCCCCTCATCTCGGGTGC 61.143 63.158 0.00 0.00 40.24 5.01
176 177 1.750930 CATCCCCTCATCTCGGGTG 59.249 63.158 0.00 0.00 40.24 4.61
177 178 1.460305 CCATCCCCTCATCTCGGGT 60.460 63.158 0.00 0.00 40.24 5.28
178 179 0.178932 TACCATCCCCTCATCTCGGG 60.179 60.000 0.00 0.00 41.59 5.14
179 180 1.717032 TTACCATCCCCTCATCTCGG 58.283 55.000 0.00 0.00 0.00 4.63
180 181 4.067896 CAATTTACCATCCCCTCATCTCG 58.932 47.826 0.00 0.00 0.00 4.04
181 182 4.104738 TCCAATTTACCATCCCCTCATCTC 59.895 45.833 0.00 0.00 0.00 2.75
182 183 4.054369 TCCAATTTACCATCCCCTCATCT 58.946 43.478 0.00 0.00 0.00 2.90
183 184 4.104738 TCTCCAATTTACCATCCCCTCATC 59.895 45.833 0.00 0.00 0.00 2.92
184 185 4.054369 TCTCCAATTTACCATCCCCTCAT 58.946 43.478 0.00 0.00 0.00 2.90
185 186 3.469859 TCTCCAATTTACCATCCCCTCA 58.530 45.455 0.00 0.00 0.00 3.86
186 187 4.401925 CATCTCCAATTTACCATCCCCTC 58.598 47.826 0.00 0.00 0.00 4.30
187 188 3.437052 GCATCTCCAATTTACCATCCCCT 60.437 47.826 0.00 0.00 0.00 4.79
188 189 2.893489 GCATCTCCAATTTACCATCCCC 59.107 50.000 0.00 0.00 0.00 4.81
189 190 3.571401 CAGCATCTCCAATTTACCATCCC 59.429 47.826 0.00 0.00 0.00 3.85
190 191 4.464008 TCAGCATCTCCAATTTACCATCC 58.536 43.478 0.00 0.00 0.00 3.51
191 192 6.645790 AATCAGCATCTCCAATTTACCATC 57.354 37.500 0.00 0.00 0.00 3.51
192 193 9.812347 TTATAATCAGCATCTCCAATTTACCAT 57.188 29.630 0.00 0.00 0.00 3.55
193 194 9.639563 TTTATAATCAGCATCTCCAATTTACCA 57.360 29.630 0.00 0.00 0.00 3.25
226 227 8.575589 TGTTTTCATGAACAATATGTAAGCAGT 58.424 29.630 7.89 0.00 36.64 4.40
227 228 8.969121 TGTTTTCATGAACAATATGTAAGCAG 57.031 30.769 7.89 0.00 36.64 4.24
228 229 9.571810 GATGTTTTCATGAACAATATGTAAGCA 57.428 29.630 7.89 0.00 42.29 3.91
229 230 9.571810 TGATGTTTTCATGAACAATATGTAAGC 57.428 29.630 7.89 0.00 42.29 3.09
283 284 7.707035 TGTTGGCGTTTGTAAATGATACTTTTT 59.293 29.630 0.93 0.00 0.00 1.94
284 285 7.203910 TGTTGGCGTTTGTAAATGATACTTTT 58.796 30.769 0.93 0.00 0.00 2.27
285 286 6.740110 TGTTGGCGTTTGTAAATGATACTTT 58.260 32.000 0.93 0.00 0.00 2.66
286 287 6.320494 TGTTGGCGTTTGTAAATGATACTT 57.680 33.333 0.93 0.00 0.00 2.24
287 288 5.950758 TGTTGGCGTTTGTAAATGATACT 57.049 34.783 0.93 0.00 0.00 2.12
288 289 6.804295 TGATTGTTGGCGTTTGTAAATGATAC 59.196 34.615 0.93 0.00 0.00 2.24
289 290 6.914259 TGATTGTTGGCGTTTGTAAATGATA 58.086 32.000 0.93 0.00 0.00 2.15
290 291 5.777802 TGATTGTTGGCGTTTGTAAATGAT 58.222 33.333 0.93 0.00 0.00 2.45
291 292 5.188327 TGATTGTTGGCGTTTGTAAATGA 57.812 34.783 0.93 0.00 0.00 2.57
292 293 7.305361 CGATATGATTGTTGGCGTTTGTAAATG 60.305 37.037 0.00 0.00 0.00 2.32
293 294 6.690957 CGATATGATTGTTGGCGTTTGTAAAT 59.309 34.615 0.00 0.00 0.00 1.40
294 295 6.024664 CGATATGATTGTTGGCGTTTGTAAA 58.975 36.000 0.00 0.00 0.00 2.01
295 296 5.447954 CCGATATGATTGTTGGCGTTTGTAA 60.448 40.000 0.00 0.00 0.00 2.41
296 297 4.034626 CCGATATGATTGTTGGCGTTTGTA 59.965 41.667 0.00 0.00 0.00 2.41
297 298 3.181501 CCGATATGATTGTTGGCGTTTGT 60.182 43.478 0.00 0.00 0.00 2.83
298 299 3.064682 TCCGATATGATTGTTGGCGTTTG 59.935 43.478 0.00 0.00 0.00 2.93
299 300 3.275143 TCCGATATGATTGTTGGCGTTT 58.725 40.909 0.00 0.00 0.00 3.60
300 301 2.912771 TCCGATATGATTGTTGGCGTT 58.087 42.857 0.00 0.00 0.00 4.84
301 302 2.613026 TCCGATATGATTGTTGGCGT 57.387 45.000 0.00 0.00 0.00 5.68
302 303 3.066380 TCATCCGATATGATTGTTGGCG 58.934 45.455 0.00 0.00 0.00 5.69
303 304 4.067896 AGTCATCCGATATGATTGTTGGC 58.932 43.478 4.09 0.00 0.00 4.52
304 305 5.059161 ACAGTCATCCGATATGATTGTTGG 58.941 41.667 17.28 2.02 43.40 3.77
307 308 6.260936 GGAAAACAGTCATCCGATATGATTGT 59.739 38.462 17.28 17.28 46.33 2.71
308 309 6.484643 AGGAAAACAGTCATCCGATATGATTG 59.515 38.462 16.34 16.34 40.29 2.67
309 310 6.484643 CAGGAAAACAGTCATCCGATATGATT 59.515 38.462 4.09 0.00 38.31 2.57
310 311 5.994054 CAGGAAAACAGTCATCCGATATGAT 59.006 40.000 4.09 0.00 38.31 2.45
311 312 5.359756 CAGGAAAACAGTCATCCGATATGA 58.640 41.667 0.00 0.00 38.31 2.15
312 313 4.512944 CCAGGAAAACAGTCATCCGATATG 59.487 45.833 0.00 0.00 38.31 1.78
313 314 4.708177 CCAGGAAAACAGTCATCCGATAT 58.292 43.478 0.00 0.00 38.31 1.63
314 315 3.681594 GCCAGGAAAACAGTCATCCGATA 60.682 47.826 0.00 0.00 38.31 2.92
315 316 2.941415 GCCAGGAAAACAGTCATCCGAT 60.941 50.000 0.00 0.00 38.31 4.18
316 317 1.610624 GCCAGGAAAACAGTCATCCGA 60.611 52.381 0.00 0.00 38.31 4.55
317 318 0.804989 GCCAGGAAAACAGTCATCCG 59.195 55.000 0.00 0.00 38.31 4.18
318 319 1.177401 GGCCAGGAAAACAGTCATCC 58.823 55.000 0.00 0.00 0.00 3.51
319 320 2.206576 AGGCCAGGAAAACAGTCATC 57.793 50.000 5.01 0.00 0.00 2.92
320 321 2.158475 TGAAGGCCAGGAAAACAGTCAT 60.158 45.455 5.01 0.00 0.00 3.06
321 322 1.214175 TGAAGGCCAGGAAAACAGTCA 59.786 47.619 5.01 0.00 0.00 3.41
322 323 1.981256 TGAAGGCCAGGAAAACAGTC 58.019 50.000 5.01 0.00 0.00 3.51
323 324 2.452600 TTGAAGGCCAGGAAAACAGT 57.547 45.000 5.01 0.00 0.00 3.55
324 325 2.958355 TCTTTGAAGGCCAGGAAAACAG 59.042 45.455 5.01 0.00 0.00 3.16
325 326 3.025322 TCTTTGAAGGCCAGGAAAACA 57.975 42.857 5.01 0.00 0.00 2.83
326 327 3.636764 TCTTCTTTGAAGGCCAGGAAAAC 59.363 43.478 5.01 0.00 0.00 2.43
327 328 3.909732 TCTTCTTTGAAGGCCAGGAAAA 58.090 40.909 5.01 0.00 0.00 2.29
328 329 3.593442 TCTTCTTTGAAGGCCAGGAAA 57.407 42.857 5.01 0.00 0.00 3.13
329 330 3.593442 TTCTTCTTTGAAGGCCAGGAA 57.407 42.857 5.01 0.00 0.00 3.36
330 331 3.593442 TTTCTTCTTTGAAGGCCAGGA 57.407 42.857 5.01 0.00 0.00 3.86
331 332 5.653769 TGATATTTCTTCTTTGAAGGCCAGG 59.346 40.000 5.01 0.00 0.00 4.45
332 333 6.764308 TGATATTTCTTCTTTGAAGGCCAG 57.236 37.500 5.01 0.00 0.00 4.85
333 334 8.821686 TTATGATATTTCTTCTTTGAAGGCCA 57.178 30.769 5.01 0.00 0.00 5.36
344 345 9.503427 CGGGTTCAACTTTTATGATATTTCTTC 57.497 33.333 0.00 0.00 0.00 2.87
345 346 8.466798 CCGGGTTCAACTTTTATGATATTTCTT 58.533 33.333 0.00 0.00 0.00 2.52
346 347 7.416326 GCCGGGTTCAACTTTTATGATATTTCT 60.416 37.037 2.18 0.00 0.00 2.52
347 348 6.695713 GCCGGGTTCAACTTTTATGATATTTC 59.304 38.462 2.18 0.00 0.00 2.17
348 349 6.379988 AGCCGGGTTCAACTTTTATGATATTT 59.620 34.615 0.00 0.00 0.00 1.40
349 350 5.891551 AGCCGGGTTCAACTTTTATGATATT 59.108 36.000 0.00 0.00 0.00 1.28
350 351 5.299279 CAGCCGGGTTCAACTTTTATGATAT 59.701 40.000 1.64 0.00 0.00 1.63
351 352 4.638421 CAGCCGGGTTCAACTTTTATGATA 59.362 41.667 1.64 0.00 0.00 2.15
352 353 3.443681 CAGCCGGGTTCAACTTTTATGAT 59.556 43.478 1.64 0.00 0.00 2.45
353 354 2.817258 CAGCCGGGTTCAACTTTTATGA 59.183 45.455 1.64 0.00 0.00 2.15
354 355 2.094752 CCAGCCGGGTTCAACTTTTATG 60.095 50.000 1.64 0.00 0.00 1.90
355 356 2.167662 CCAGCCGGGTTCAACTTTTAT 58.832 47.619 1.64 0.00 0.00 1.40
356 357 1.143277 TCCAGCCGGGTTCAACTTTTA 59.857 47.619 1.64 0.00 38.11 1.52
357 358 0.106419 TCCAGCCGGGTTCAACTTTT 60.106 50.000 1.64 0.00 38.11 2.27
358 359 0.537371 CTCCAGCCGGGTTCAACTTT 60.537 55.000 1.64 0.00 38.11 2.66
359 360 1.073199 CTCCAGCCGGGTTCAACTT 59.927 57.895 1.64 0.00 38.11 2.66
360 361 2.750350 CTCCAGCCGGGTTCAACT 59.250 61.111 1.64 0.00 38.11 3.16
361 362 2.359975 CCTCCAGCCGGGTTCAAC 60.360 66.667 1.64 0.00 38.11 3.18
362 363 3.646715 CCCTCCAGCCGGGTTCAA 61.647 66.667 1.64 0.00 36.91 2.69
371 372 1.454663 GAATTGAGGCCCCTCCAGC 60.455 63.158 11.62 0.00 42.09 4.85
372 373 0.627986 AAGAATTGAGGCCCCTCCAG 59.372 55.000 11.62 0.00 42.09 3.86
373 374 0.625849 GAAGAATTGAGGCCCCTCCA 59.374 55.000 11.62 1.12 42.09 3.86
374 375 0.922626 AGAAGAATTGAGGCCCCTCC 59.077 55.000 11.62 0.00 42.09 4.30
375 376 1.561542 TCAGAAGAATTGAGGCCCCTC 59.438 52.381 7.39 7.39 43.01 4.30
376 377 1.563410 CTCAGAAGAATTGAGGCCCCT 59.437 52.381 0.00 0.00 38.68 4.79
377 378 2.049888 CTCAGAAGAATTGAGGCCCC 57.950 55.000 0.00 0.00 38.68 5.80
382 383 5.954296 TTTCTTGCCTCAGAAGAATTGAG 57.046 39.130 0.00 0.00 38.81 3.02
383 384 5.829924 ACTTTTCTTGCCTCAGAAGAATTGA 59.170 36.000 0.00 0.00 38.81 2.57
384 385 6.081872 ACTTTTCTTGCCTCAGAAGAATTG 57.918 37.500 0.00 0.00 38.81 2.32
385 386 6.432472 CCTACTTTTCTTGCCTCAGAAGAATT 59.568 38.462 0.00 0.00 38.81 2.17
386 387 5.942826 CCTACTTTTCTTGCCTCAGAAGAAT 59.057 40.000 0.00 0.00 38.81 2.40
387 388 5.163195 ACCTACTTTTCTTGCCTCAGAAGAA 60.163 40.000 0.00 0.00 37.60 2.52
388 389 4.348168 ACCTACTTTTCTTGCCTCAGAAGA 59.652 41.667 0.00 0.00 34.22 2.87
389 390 4.453819 CACCTACTTTTCTTGCCTCAGAAG 59.546 45.833 0.00 0.00 34.22 2.85
390 391 4.102524 TCACCTACTTTTCTTGCCTCAGAA 59.897 41.667 0.00 0.00 0.00 3.02
391 392 3.646162 TCACCTACTTTTCTTGCCTCAGA 59.354 43.478 0.00 0.00 0.00 3.27
392 393 3.999663 CTCACCTACTTTTCTTGCCTCAG 59.000 47.826 0.00 0.00 0.00 3.35
393 394 3.646162 TCTCACCTACTTTTCTTGCCTCA 59.354 43.478 0.00 0.00 0.00 3.86
394 395 4.273148 TCTCACCTACTTTTCTTGCCTC 57.727 45.455 0.00 0.00 0.00 4.70
395 396 4.534103 AGATCTCACCTACTTTTCTTGCCT 59.466 41.667 0.00 0.00 0.00 4.75
396 397 4.633565 CAGATCTCACCTACTTTTCTTGCC 59.366 45.833 0.00 0.00 0.00 4.52
397 398 5.121454 CACAGATCTCACCTACTTTTCTTGC 59.879 44.000 0.00 0.00 0.00 4.01
398 399 5.121454 GCACAGATCTCACCTACTTTTCTTG 59.879 44.000 0.00 0.00 0.00 3.02
399 400 5.221722 TGCACAGATCTCACCTACTTTTCTT 60.222 40.000 0.00 0.00 0.00 2.52
400 401 4.284490 TGCACAGATCTCACCTACTTTTCT 59.716 41.667 0.00 0.00 0.00 2.52
401 402 4.569943 TGCACAGATCTCACCTACTTTTC 58.430 43.478 0.00 0.00 0.00 2.29
402 403 4.623932 TGCACAGATCTCACCTACTTTT 57.376 40.909 0.00 0.00 0.00 2.27
403 404 4.623932 TTGCACAGATCTCACCTACTTT 57.376 40.909 0.00 0.00 0.00 2.66
404 405 4.623932 TTTGCACAGATCTCACCTACTT 57.376 40.909 0.00 0.00 0.00 2.24
405 406 4.623932 TTTTGCACAGATCTCACCTACT 57.376 40.909 0.00 0.00 0.00 2.57
406 407 5.181748 AGATTTTGCACAGATCTCACCTAC 58.818 41.667 0.00 0.00 0.00 3.18
407 408 5.426689 AGATTTTGCACAGATCTCACCTA 57.573 39.130 0.00 0.00 0.00 3.08
408 409 4.298103 AGATTTTGCACAGATCTCACCT 57.702 40.909 0.00 0.00 0.00 4.00
409 410 5.382618 AAAGATTTTGCACAGATCTCACC 57.617 39.130 0.00 0.00 30.19 4.02
410 411 6.441274 TCAAAAGATTTTGCACAGATCTCAC 58.559 36.000 12.20 0.00 45.35 3.51
411 412 6.638096 TCAAAAGATTTTGCACAGATCTCA 57.362 33.333 12.20 0.00 45.35 3.27
412 413 5.572126 GCTCAAAAGATTTTGCACAGATCTC 59.428 40.000 12.20 0.00 45.35 2.75
413 414 5.243283 AGCTCAAAAGATTTTGCACAGATCT 59.757 36.000 12.20 0.00 45.35 2.75
414 415 5.467705 AGCTCAAAAGATTTTGCACAGATC 58.532 37.500 12.20 0.00 45.35 2.75
415 416 5.464030 AGCTCAAAAGATTTTGCACAGAT 57.536 34.783 12.20 2.53 45.35 2.90
416 417 4.924305 AGCTCAAAAGATTTTGCACAGA 57.076 36.364 12.20 0.00 45.35 3.41
417 418 6.384224 TCATAGCTCAAAAGATTTTGCACAG 58.616 36.000 12.20 6.93 45.35 3.66
418 419 6.330004 TCATAGCTCAAAAGATTTTGCACA 57.670 33.333 12.20 0.00 45.35 4.57
419 420 7.823149 ATTCATAGCTCAAAAGATTTTGCAC 57.177 32.000 12.20 7.37 45.35 4.57
420 421 8.742777 ACTATTCATAGCTCAAAAGATTTTGCA 58.257 29.630 12.20 0.00 39.39 4.08
426 427 9.434420 GCATCTACTATTCATAGCTCAAAAGAT 57.566 33.333 0.00 0.00 33.68 2.40
427 428 7.596621 CGCATCTACTATTCATAGCTCAAAAGA 59.403 37.037 0.00 0.00 33.68 2.52
428 429 7.596621 TCGCATCTACTATTCATAGCTCAAAAG 59.403 37.037 0.00 0.00 33.68 2.27
429 430 7.433680 TCGCATCTACTATTCATAGCTCAAAA 58.566 34.615 0.00 0.00 33.68 2.44
430 431 6.981722 TCGCATCTACTATTCATAGCTCAAA 58.018 36.000 0.00 0.00 33.68 2.69
431 432 6.575162 TCGCATCTACTATTCATAGCTCAA 57.425 37.500 0.00 0.00 33.68 3.02
432 433 6.575162 TTCGCATCTACTATTCATAGCTCA 57.425 37.500 0.00 0.00 33.68 4.26
433 434 7.463913 GCATTTCGCATCTACTATTCATAGCTC 60.464 40.741 0.00 0.00 41.79 4.09
434 435 6.312426 GCATTTCGCATCTACTATTCATAGCT 59.688 38.462 0.00 0.00 41.79 3.32
435 436 6.312426 AGCATTTCGCATCTACTATTCATAGC 59.688 38.462 0.00 0.00 46.13 2.97
436 437 7.824704 AGCATTTCGCATCTACTATTCATAG 57.175 36.000 0.00 0.00 46.13 2.23
437 438 9.705290 TTAAGCATTTCGCATCTACTATTCATA 57.295 29.630 0.00 0.00 46.13 2.15
438 439 8.607441 TTAAGCATTTCGCATCTACTATTCAT 57.393 30.769 0.00 0.00 46.13 2.57
439 440 8.432110 TTTAAGCATTTCGCATCTACTATTCA 57.568 30.769 0.00 0.00 46.13 2.57
440 441 9.716507 TTTTTAAGCATTTCGCATCTACTATTC 57.283 29.630 0.00 0.00 46.13 1.75
463 464 4.020662 TGTTCAGTGAACCTTTGCCTTTTT 60.021 37.500 28.67 0.00 41.35 1.94
464 465 3.513515 TGTTCAGTGAACCTTTGCCTTTT 59.486 39.130 28.67 0.00 41.35 2.27
465 466 3.096092 TGTTCAGTGAACCTTTGCCTTT 58.904 40.909 28.67 0.00 41.35 3.11
466 467 2.733956 TGTTCAGTGAACCTTTGCCTT 58.266 42.857 28.67 0.00 41.35 4.35
467 468 2.435372 TGTTCAGTGAACCTTTGCCT 57.565 45.000 28.67 0.00 41.35 4.75
468 469 4.846779 TTATGTTCAGTGAACCTTTGCC 57.153 40.909 28.67 6.95 41.35 4.52
469 470 5.119125 GCATTTATGTTCAGTGAACCTTTGC 59.881 40.000 28.67 23.93 41.35 3.68
470 471 5.634859 GGCATTTATGTTCAGTGAACCTTTG 59.365 40.000 28.67 19.74 41.35 2.77
471 472 5.539955 AGGCATTTATGTTCAGTGAACCTTT 59.460 36.000 28.67 17.60 41.35 3.11
472 473 5.079643 AGGCATTTATGTTCAGTGAACCTT 58.920 37.500 28.67 19.74 41.35 3.50
473 474 4.666512 AGGCATTTATGTTCAGTGAACCT 58.333 39.130 28.67 22.54 41.35 3.50
474 475 6.509418 TTAGGCATTTATGTTCAGTGAACC 57.491 37.500 28.67 13.80 41.35 3.62
475 476 8.243426 TCATTTAGGCATTTATGTTCAGTGAAC 58.757 33.333 25.99 25.99 42.26 3.18
476 477 8.347004 TCATTTAGGCATTTATGTTCAGTGAA 57.653 30.769 0.08 0.08 0.00 3.18
477 478 7.936496 TCATTTAGGCATTTATGTTCAGTGA 57.064 32.000 0.00 0.00 0.00 3.41
478 479 9.669353 GTATCATTTAGGCATTTATGTTCAGTG 57.331 33.333 0.00 0.00 0.00 3.66
479 480 8.559536 CGTATCATTTAGGCATTTATGTTCAGT 58.440 33.333 0.00 0.00 0.00 3.41
480 481 8.017373 CCGTATCATTTAGGCATTTATGTTCAG 58.983 37.037 0.00 0.00 0.00 3.02
481 482 7.500892 ACCGTATCATTTAGGCATTTATGTTCA 59.499 33.333 0.00 0.00 0.00 3.18
482 483 7.871853 ACCGTATCATTTAGGCATTTATGTTC 58.128 34.615 0.00 0.00 0.00 3.18
483 484 7.817418 ACCGTATCATTTAGGCATTTATGTT 57.183 32.000 0.00 0.00 0.00 2.71
484 485 7.817418 AACCGTATCATTTAGGCATTTATGT 57.183 32.000 0.00 0.00 0.00 2.29
485 486 9.528018 AAAAACCGTATCATTTAGGCATTTATG 57.472 29.630 0.00 0.00 0.00 1.90
486 487 9.744468 GAAAAACCGTATCATTTAGGCATTTAT 57.256 29.630 0.00 0.00 0.00 1.40
487 488 8.740906 TGAAAAACCGTATCATTTAGGCATTTA 58.259 29.630 0.00 0.00 0.00 1.40
488 489 7.607250 TGAAAAACCGTATCATTTAGGCATTT 58.393 30.769 0.00 0.00 0.00 2.32
489 490 7.093945 ACTGAAAAACCGTATCATTTAGGCATT 60.094 33.333 0.00 0.00 0.00 3.56
490 491 6.377146 ACTGAAAAACCGTATCATTTAGGCAT 59.623 34.615 0.00 0.00 0.00 4.40
491 492 5.708230 ACTGAAAAACCGTATCATTTAGGCA 59.292 36.000 0.00 0.00 0.00 4.75
492 493 6.128117 TGACTGAAAAACCGTATCATTTAGGC 60.128 38.462 0.00 0.00 0.00 3.93
493 494 7.372451 TGACTGAAAAACCGTATCATTTAGG 57.628 36.000 0.00 0.00 0.00 2.69
494 495 8.450964 ACATGACTGAAAAACCGTATCATTTAG 58.549 33.333 0.00 0.00 0.00 1.85
495 496 8.330466 ACATGACTGAAAAACCGTATCATTTA 57.670 30.769 0.00 0.00 0.00 1.40
496 497 7.214467 ACATGACTGAAAAACCGTATCATTT 57.786 32.000 0.00 0.00 0.00 2.32
497 498 6.817765 ACATGACTGAAAAACCGTATCATT 57.182 33.333 0.00 0.00 0.00 2.57
498 499 6.402118 CGAACATGACTGAAAAACCGTATCAT 60.402 38.462 0.00 0.00 0.00 2.45
499 500 5.107259 CGAACATGACTGAAAAACCGTATCA 60.107 40.000 0.00 0.00 0.00 2.15
536 537 4.843220 ACTTCTGGAATTTGACAAGCAG 57.157 40.909 0.00 0.00 0.00 4.24
568 569 1.831736 AGTAATTCCCCACGAGTCCAG 59.168 52.381 0.00 0.00 0.00 3.86
570 571 2.235402 TGAAGTAATTCCCCACGAGTCC 59.765 50.000 0.00 0.00 0.00 3.85
597 598 5.118990 CAGATGAGGGTCAACGTATTGATT 58.881 41.667 0.00 0.00 46.43 2.57
598 599 4.443457 CCAGATGAGGGTCAACGTATTGAT 60.443 45.833 0.00 0.00 46.43 2.57
599 600 3.118775 CCAGATGAGGGTCAACGTATTGA 60.119 47.826 0.00 0.00 42.73 2.57
609 610 3.696548 GGTCATTTTTCCAGATGAGGGTC 59.303 47.826 0.00 0.00 33.27 4.46
620 621 4.396790 TGGCAATACGTAGGTCATTTTTCC 59.603 41.667 0.08 0.00 0.00 3.13
658 659 6.164876 CCTCACTCCTCATATAGCAAATCAG 58.835 44.000 0.00 0.00 0.00 2.90
659 660 5.512060 GCCTCACTCCTCATATAGCAAATCA 60.512 44.000 0.00 0.00 0.00 2.57
660 661 4.934602 GCCTCACTCCTCATATAGCAAATC 59.065 45.833 0.00 0.00 0.00 2.17
661 662 4.596643 AGCCTCACTCCTCATATAGCAAAT 59.403 41.667 0.00 0.00 0.00 2.32
662 663 3.969976 AGCCTCACTCCTCATATAGCAAA 59.030 43.478 0.00 0.00 0.00 3.68
663 664 3.576118 GAGCCTCACTCCTCATATAGCAA 59.424 47.826 0.00 0.00 39.75 3.91
664 665 3.161067 GAGCCTCACTCCTCATATAGCA 58.839 50.000 0.00 0.00 39.75 3.49
665 666 3.866883 GAGCCTCACTCCTCATATAGC 57.133 52.381 0.00 0.00 39.75 2.97
727 734 7.225538 CGGAAGTGCTCTCAAGAAATGTAATAT 59.774 37.037 0.00 0.00 0.00 1.28
732 741 3.070018 CGGAAGTGCTCTCAAGAAATGT 58.930 45.455 0.00 0.00 0.00 2.71
733 742 3.070018 ACGGAAGTGCTCTCAAGAAATG 58.930 45.455 0.00 0.00 46.97 2.32
770 779 9.411801 CACGTGTGCAGAGATTATAGTATTATT 57.588 33.333 7.58 0.00 0.00 1.40
771 780 8.793592 TCACGTGTGCAGAGATTATAGTATTAT 58.206 33.333 16.51 0.00 0.00 1.28
777 786 3.733224 GCTCACGTGTGCAGAGATTATAG 59.267 47.826 31.47 11.88 34.92 1.31
878 898 1.681264 CAACTTGGGGTGTGGAGTTTC 59.319 52.381 0.00 0.00 30.41 2.78
890 910 2.046314 ATCGGTCGCCAACTTGGG 60.046 61.111 9.95 0.43 38.19 4.12
918 940 0.675633 GTGAGGGTGCAATGCAAAGT 59.324 50.000 10.44 0.00 41.47 2.66
981 1015 3.702048 GTCTGGCGGTGTGGGCTA 61.702 66.667 0.00 0.00 0.00 3.93
992 1026 1.537202 GATGTGTTTGTGAGGTCTGGC 59.463 52.381 0.00 0.00 0.00 4.85
1015 1050 5.330455 TCTCTCGAGAATATGTTGCTTGT 57.670 39.130 17.36 0.00 33.91 3.16
1052 1091 5.548056 AGTTTCTTCCCTGAGTGGATAAGAA 59.452 40.000 0.00 0.00 41.52 2.52
1056 1095 3.055094 GCAGTTTCTTCCCTGAGTGGATA 60.055 47.826 0.00 0.00 38.35 2.59
1057 1096 2.290577 GCAGTTTCTTCCCTGAGTGGAT 60.291 50.000 0.00 0.00 38.35 3.41
1058 1097 1.072331 GCAGTTTCTTCCCTGAGTGGA 59.928 52.381 0.00 0.00 38.35 4.02
1061 1100 2.487986 CCAAGCAGTTTCTTCCCTGAGT 60.488 50.000 0.00 0.00 0.00 3.41
1097 1145 1.361668 CCCGAGCTTTGATCACACGG 61.362 60.000 11.93 11.93 38.83 4.94
1130 1192 2.108566 CTGGCTCGCCATCTCCAG 59.891 66.667 11.59 0.00 46.15 3.86
1156 1218 1.975407 CAGCCCCACCTTCAGCAAG 60.975 63.158 0.00 0.00 0.00 4.01
1157 1219 2.115910 CAGCCCCACCTTCAGCAA 59.884 61.111 0.00 0.00 0.00 3.91
1343 1411 4.175489 CGACGACGGCTCCACGAT 62.175 66.667 0.00 0.00 37.61 3.73
1377 1451 4.722700 CCTTCTGGTGGGCGTGGG 62.723 72.222 0.00 0.00 0.00 4.61
1378 1452 3.612247 CTCCTTCTGGTGGGCGTGG 62.612 68.421 0.00 0.00 34.23 4.94
1394 1468 1.829222 TGGTCCGGTCAACTAATCCTC 59.171 52.381 0.00 0.00 0.00 3.71
1426 1500 4.508128 TCGATCCTTGTCCGCGCC 62.508 66.667 0.00 0.00 0.00 6.53
1427 1501 2.956964 CTCGATCCTTGTCCGCGC 60.957 66.667 0.00 0.00 0.00 6.86
1428 1502 2.956964 GCTCGATCCTTGTCCGCG 60.957 66.667 0.00 0.00 0.00 6.46
1429 1503 1.880340 CAGCTCGATCCTTGTCCGC 60.880 63.158 0.00 0.00 0.00 5.54
1430 1504 1.227089 CCAGCTCGATCCTTGTCCG 60.227 63.158 0.00 0.00 0.00 4.79
1431 1505 1.144936 CCCAGCTCGATCCTTGTCC 59.855 63.158 0.00 0.00 0.00 4.02
1463 1537 1.067669 TCGGCAGACATATGCTCACTC 59.932 52.381 1.58 0.00 45.75 3.51
1466 1540 0.249615 GCTCGGCAGACATATGCTCA 60.250 55.000 1.58 0.00 45.75 4.26
1601 1681 1.471119 TTGTACAACCCAAAACGGCA 58.529 45.000 3.59 0.00 0.00 5.69
1897 1979 2.284405 ACCCCTACCGGTGGACAG 60.284 66.667 21.08 7.39 33.77 3.51
1959 2041 5.395103 CCACAAAGTCTCCACCAAATTTTCA 60.395 40.000 0.00 0.00 0.00 2.69
2033 2115 3.932710 TCCGTTTGTCATCATGAAGTAGC 59.067 43.478 0.00 0.00 0.00 3.58
2036 2118 3.691118 CCATCCGTTTGTCATCATGAAGT 59.309 43.478 0.00 0.00 0.00 3.01
2376 2466 6.422333 AGAAAACCAACCAATCAAACCAATT 58.578 32.000 0.00 0.00 0.00 2.32
2559 2649 5.538118 TGAAATGATGTATAGTGGGCTACG 58.462 41.667 0.00 0.00 0.00 3.51
2627 2717 4.994852 CACATGGTCGGTAAATACCCTATG 59.005 45.833 4.07 7.19 43.51 2.23
2630 2720 2.420967 GCACATGGTCGGTAAATACCCT 60.421 50.000 4.07 0.00 43.51 4.34
2665 2755 2.363680 AGTCGGAGCTGAATTCATCGAT 59.636 45.455 8.96 0.00 0.00 3.59
2712 2802 3.986996 TGGTTTCTGAGCATCTGATGA 57.013 42.857 21.30 0.00 42.79 2.92
2714 2804 3.442977 GCTTTGGTTTCTGAGCATCTGAT 59.557 43.478 0.00 0.00 42.79 2.90
2726 2816 2.860136 GAGCAAACACAGCTTTGGTTTC 59.140 45.455 0.00 0.00 43.58 2.78


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.