Multiple sequence alignment - TraesCS5A01G231100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G231100 chr5A 100.000 2954 0 0 1 2954 446607009 446604056 0.000000e+00 5456
1 TraesCS5A01G231100 chr5A 96.138 984 23 7 981 1958 446829252 446828278 0.000000e+00 1592
2 TraesCS5A01G231100 chr5A 83.694 509 47 18 504 981 446829792 446829289 5.810000e-122 448
3 TraesCS5A01G231100 chr5A 89.888 89 8 1 2867 2954 94745092 94745004 2.410000e-21 113
4 TraesCS5A01G231100 chr5B 92.301 1130 51 17 982 2086 406557912 406556794 0.000000e+00 1572
5 TraesCS5A01G231100 chr5B 90.813 283 13 4 678 953 406558307 406558031 1.670000e-97 366
6 TraesCS5A01G231100 chr5B 90.187 214 17 3 2092 2303 406556755 406556544 2.900000e-70 276
7 TraesCS5A01G231100 chr5D 95.408 980 42 1 982 1958 345034576 345035555 0.000000e+00 1557
8 TraesCS5A01G231100 chr5D 91.100 1000 61 14 1 981 345033514 345034504 0.000000e+00 1328
9 TraesCS5A01G231100 chr5D 90.143 558 37 2 2314 2871 303418930 303419469 0.000000e+00 710
10 TraesCS5A01G231100 chr5D 87.336 229 20 4 2092 2314 345035764 345035989 1.360000e-63 254
11 TraesCS5A01G231100 chr5D 85.830 247 14 8 707 944 345033409 345033643 2.940000e-60 243
12 TraesCS5A01G231100 chr5D 89.888 89 8 1 2867 2954 103636656 103636744 2.410000e-21 113
13 TraesCS5A01G231100 chr5D 89.655 87 3 5 2000 2086 345035646 345035726 4.030000e-19 106
14 TraesCS5A01G231100 chr2A 91.913 643 52 0 2312 2954 302457796 302458438 0.000000e+00 900
15 TraesCS5A01G231100 chr2A 93.529 170 11 0 2314 2483 27911681 27911512 1.360000e-63 254
16 TraesCS5A01G231100 chr3A 84.848 891 124 6 998 1878 54326796 54325907 0.000000e+00 887
17 TraesCS5A01G231100 chr3A 89.130 92 10 0 2863 2954 625536742 625536833 6.690000e-22 115
18 TraesCS5A01G231100 chr7A 94.595 407 19 2 2314 2718 709301270 709300865 6.950000e-176 627
19 TraesCS5A01G231100 chr7A 91.765 85 7 0 2870 2954 350570464 350570380 5.170000e-23 119
20 TraesCS5A01G231100 chr7A 90.588 85 8 0 2870 2954 232336873 232336957 2.410000e-21 113
21 TraesCS5A01G231100 chr7B 85.158 411 15 4 2313 2723 198981177 198981541 2.150000e-101 379
22 TraesCS5A01G231100 chr7B 94.366 71 4 0 2698 2768 198981598 198981668 3.110000e-20 110
23 TraesCS5A01G231100 chr7B 92.754 69 5 0 2799 2867 198981667 198981735 1.870000e-17 100
24 TraesCS5A01G231100 chr2B 90.698 86 8 0 2869 2954 675207656 675207741 6.690000e-22 115
25 TraesCS5A01G231100 chr1B 90.588 85 8 0 2869 2953 525901872 525901956 2.410000e-21 113
26 TraesCS5A01G231100 chr3B 87.629 97 10 2 2859 2954 68913467 68913562 8.650000e-21 111


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G231100 chr5A 446604056 446607009 2953 True 5456.0 5456 100.000000 1 2954 1 chr5A.!!$R2 2953
1 TraesCS5A01G231100 chr5A 446828278 446829792 1514 True 1020.0 1592 89.916000 504 1958 2 chr5A.!!$R3 1454
2 TraesCS5A01G231100 chr5B 406556544 406558307 1763 True 738.0 1572 91.100333 678 2303 3 chr5B.!!$R1 1625
3 TraesCS5A01G231100 chr5D 303418930 303419469 539 False 710.0 710 90.143000 2314 2871 1 chr5D.!!$F2 557
4 TraesCS5A01G231100 chr5D 345033409 345035989 2580 False 697.6 1557 89.865800 1 2314 5 chr5D.!!$F3 2313
5 TraesCS5A01G231100 chr2A 302457796 302458438 642 False 900.0 900 91.913000 2312 2954 1 chr2A.!!$F1 642
6 TraesCS5A01G231100 chr3A 54325907 54326796 889 True 887.0 887 84.848000 998 1878 1 chr3A.!!$R1 880

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
104 210 0.605589 AAGCCACCAGAACTCTCTCG 59.394 55.0 0.0 0.0 0.0 4.04 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1963 2230 0.905357 CATCTTCACCGTTCCCTCCT 59.095 55.0 0.0 0.0 0.0 3.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
93 199 2.132996 CAAACCTGGCAAGCCACCA 61.133 57.895 10.24 0.00 41.89 4.17
104 210 0.605589 AAGCCACCAGAACTCTCTCG 59.394 55.000 0.00 0.00 0.00 4.04
178 284 7.872113 AGAAGCAAAGAGTAAGATATTTGGG 57.128 36.000 0.00 0.00 33.13 4.12
182 288 8.056407 AGCAAAGAGTAAGATATTTGGGAAAC 57.944 34.615 0.00 0.00 33.13 2.78
201 307 7.755582 GGAAACCAAGATGTGTTAATATTGC 57.244 36.000 0.00 0.00 29.32 3.56
246 352 7.453393 TCTCATGGACATATGAAAATCCCTAC 58.547 38.462 10.38 0.00 36.69 3.18
248 354 4.968259 TGGACATATGAAAATCCCTACCG 58.032 43.478 10.38 0.00 0.00 4.02
249 355 3.751698 GGACATATGAAAATCCCTACCGC 59.248 47.826 10.38 0.00 0.00 5.68
260 366 0.748450 CCCTACCGCGGACAATTAGA 59.252 55.000 35.90 4.91 0.00 2.10
315 421 8.559536 CAGTCAATTTAGGTATATTCGTGCAAT 58.440 33.333 0.00 0.00 0.00 3.56
316 422 9.120538 AGTCAATTTAGGTATATTCGTGCAATT 57.879 29.630 0.00 0.00 0.00 2.32
349 455 2.100989 GTCCCTCGTCTAGACACCATT 58.899 52.381 22.37 0.00 0.00 3.16
353 459 3.056107 CCCTCGTCTAGACACCATTTTGA 60.056 47.826 22.37 7.98 0.00 2.69
354 460 4.562757 CCCTCGTCTAGACACCATTTTGAA 60.563 45.833 22.37 0.00 0.00 2.69
364 470 5.007332 AGACACCATTTTGAACTTACACGAC 59.993 40.000 0.00 0.00 0.00 4.34
375 481 3.904571 ACTTACACGACGTTATGCAAGA 58.095 40.909 15.93 0.00 0.00 3.02
465 571 4.142730 GCTCTTGTCAAAAGCATCCAGTAG 60.143 45.833 6.00 0.00 36.06 2.57
494 600 5.799435 CGCATGCACAACTAAATTGATGTTA 59.201 36.000 19.57 0.00 41.23 2.41
495 601 6.237279 CGCATGCACAACTAAATTGATGTTAC 60.237 38.462 19.57 0.00 41.23 2.50
498 604 9.786105 CATGCACAACTAAATTGATGTTACATA 57.214 29.630 0.00 0.00 41.23 2.29
500 606 8.787852 TGCACAACTAAATTGATGTTACATACA 58.212 29.630 0.00 0.00 41.23 2.29
545 651 3.007940 TGCTAGAATAACCATGCCGCTAT 59.992 43.478 0.00 0.00 0.00 2.97
563 669 5.278266 CCGCTATGACAAAAAGAAAGAACCA 60.278 40.000 0.00 0.00 0.00 3.67
564 670 5.625311 CGCTATGACAAAAAGAAAGAACCAC 59.375 40.000 0.00 0.00 0.00 4.16
573 682 6.860790 AAAAGAAAGAACCACCAACCTTAA 57.139 33.333 0.00 0.00 0.00 1.85
691 811 7.533426 TCTTATCTTAACTCGTGTACTCAACC 58.467 38.462 0.00 0.00 0.00 3.77
697 817 3.914312 ACTCGTGTACTCAACCATCTTG 58.086 45.455 0.00 0.00 0.00 3.02
698 818 3.321111 ACTCGTGTACTCAACCATCTTGT 59.679 43.478 0.00 0.00 0.00 3.16
703 823 5.411781 GTGTACTCAACCATCTTGTAGAGG 58.588 45.833 0.00 0.00 0.00 3.69
728 848 9.701098 GGATAAATAATTAGTCGTATCACACCA 57.299 33.333 6.85 0.00 0.00 4.17
744 864 4.096532 TCACACCACACGCAAATAAAAGAA 59.903 37.500 0.00 0.00 0.00 2.52
772 893 1.272147 ACCTGATCTTGGAAGCCCAAC 60.272 52.381 11.38 0.00 46.94 3.77
809 937 4.022068 CAGAATGAGACTATCCCTGAGCTC 60.022 50.000 6.82 6.82 39.69 4.09
843 976 1.703438 CTGCTGAAGTGCTGCCGATC 61.703 60.000 0.00 0.00 40.39 3.69
844 977 2.806856 GCTGAAGTGCTGCCGATCG 61.807 63.158 8.51 8.51 35.62 3.69
845 978 2.806856 CTGAAGTGCTGCCGATCGC 61.807 63.158 10.32 6.08 38.31 4.58
846 979 3.918220 GAAGTGCTGCCGATCGCG 61.918 66.667 10.32 0.00 42.08 5.87
868 1003 3.306019 GCGAGGTTGTCCAAATCCATTTT 60.306 43.478 0.00 0.00 35.89 1.82
913 1050 1.454847 TTGCAAGCCACCGGAACTT 60.455 52.632 9.46 5.39 0.00 2.66
1053 1283 2.825264 GGCTTCCTCCTCATCGGG 59.175 66.667 0.00 0.00 0.00 5.14
1509 1745 4.666253 ACCACGCTGCTGGGCATT 62.666 61.111 18.12 0.07 38.13 3.56
1635 1871 2.036256 CCCAAGGGGTGCTTCCTG 59.964 66.667 0.00 0.00 38.25 3.86
1942 2187 4.421365 GCACAAAGCCCATGGAGA 57.579 55.556 15.22 0.00 37.23 3.71
1963 2230 9.488762 TGGAGATAGAGAGGTAAAACTATGAAA 57.511 33.333 0.00 0.00 0.00 2.69
1976 2243 2.236395 ACTATGAAAGGAGGGAACGGTG 59.764 50.000 0.00 0.00 0.00 4.94
1996 2263 3.990469 GTGAAGATGCAGGGTCGTATATG 59.010 47.826 0.00 0.00 0.00 1.78
1997 2264 3.641436 TGAAGATGCAGGGTCGTATATGT 59.359 43.478 0.00 0.00 0.00 2.29
1998 2265 3.667497 AGATGCAGGGTCGTATATGTG 57.333 47.619 0.00 0.00 0.00 3.21
2011 2305 5.983720 GTCGTATATGTGGTGCTGTAGATTT 59.016 40.000 0.00 0.00 0.00 2.17
2012 2306 5.983118 TCGTATATGTGGTGCTGTAGATTTG 59.017 40.000 0.00 0.00 0.00 2.32
2013 2307 5.753438 CGTATATGTGGTGCTGTAGATTTGT 59.247 40.000 0.00 0.00 0.00 2.83
2014 2308 6.921307 CGTATATGTGGTGCTGTAGATTTGTA 59.079 38.462 0.00 0.00 0.00 2.41
2015 2309 7.598869 CGTATATGTGGTGCTGTAGATTTGTAT 59.401 37.037 0.00 0.00 0.00 2.29
2016 2310 9.923143 GTATATGTGGTGCTGTAGATTTGTATA 57.077 33.333 0.00 0.00 0.00 1.47
2046 2340 6.674694 TGTTTCAATTTTGTGGATTTGGTG 57.325 33.333 0.00 0.00 0.00 4.17
2086 2380 1.801771 CGTAAATGCGGGTCAAGTTCA 59.198 47.619 0.00 0.00 0.00 3.18
2087 2381 2.224549 CGTAAATGCGGGTCAAGTTCAA 59.775 45.455 0.00 0.00 0.00 2.69
2088 2382 3.119990 CGTAAATGCGGGTCAAGTTCAAT 60.120 43.478 0.00 0.00 0.00 2.57
2155 2482 1.910722 CCTGTGGATGGAGAGTGGG 59.089 63.158 0.00 0.00 0.00 4.61
2168 2495 0.032540 GAGTGGGCTTGCACCTTTTG 59.967 55.000 0.00 0.00 0.00 2.44
2181 2508 4.963276 CACCTTTTGTGTGTCTTCTTGA 57.037 40.909 0.00 0.00 40.26 3.02
2222 2555 3.821033 AGCTTGCCGTAAATGACTTCTTT 59.179 39.130 0.00 0.00 0.00 2.52
2256 2589 3.518068 CCCCGGCGCTTTCATTCC 61.518 66.667 7.64 0.00 0.00 3.01
2262 2595 1.349973 GCGCTTTCATTCCTCGCTC 59.650 57.895 0.00 0.00 42.19 5.03
2273 2606 4.161189 TCATTCCTCGCTCTCTTTTCTCAT 59.839 41.667 0.00 0.00 0.00 2.90
2280 2613 4.462834 TCGCTCTCTTTTCTCATCAACCTA 59.537 41.667 0.00 0.00 0.00 3.08
2303 2636 0.451783 GTCCAATCCATTGTGTCGCC 59.548 55.000 0.00 0.00 36.06 5.54
2307 2640 1.086696 AATCCATTGTGTCGCCTTCG 58.913 50.000 0.00 0.00 0.00 3.79
2463 2796 9.920946 ATTATGCCACTAATTAAAGAGGAGAAA 57.079 29.630 0.00 0.00 29.40 2.52
2524 2857 5.616270 TGAGTACTTTCAATTACAGTGCCA 58.384 37.500 0.00 0.00 0.00 4.92
2572 2905 6.602009 ACATTTGTTCAGGGCTTTAGGTATAC 59.398 38.462 0.00 0.00 0.00 1.47
2616 2949 3.328505 GAATGACCCCATTGCACAAAAG 58.671 45.455 0.00 0.00 42.66 2.27
2657 2990 9.478768 TCGATTTTGTACTGTTGATGTAACTTA 57.521 29.630 0.00 0.00 40.05 2.24
2694 3027 2.354510 TGAGAATTTTTATCCCGCTGCG 59.645 45.455 16.34 16.34 0.00 5.18
2757 3090 6.233905 TCTTTGCTACAGTATGCTGGAATA 57.766 37.500 15.65 0.00 46.62 1.75
2788 3121 6.466812 TCATTGTTAGATGACAGCTCAAAGA 58.533 36.000 0.00 0.00 31.35 2.52
2852 3185 6.546428 TCTCTCGATTCCTGAACCTAAAAT 57.454 37.500 0.00 0.00 0.00 1.82
2853 3186 7.655521 TCTCTCGATTCCTGAACCTAAAATA 57.344 36.000 0.00 0.00 0.00 1.40
2876 3209 4.543689 TCGGATACAAAGATGTACTCCCT 58.456 43.478 0.00 0.00 44.47 4.20
2879 3212 5.069251 CGGATACAAAGATGTACTCCCTCTT 59.931 44.000 0.00 0.00 44.47 2.85
2883 3216 5.561679 ACAAAGATGTACTCCCTCTTTTCC 58.438 41.667 9.22 0.00 37.17 3.13
2885 3218 5.428184 AAGATGTACTCCCTCTTTTCCTG 57.572 43.478 0.00 0.00 0.00 3.86
2896 3229 5.672194 TCCCTCTTTTCCTGAATATAAGGCT 59.328 40.000 0.29 0.00 34.56 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
2 3 2.291465 TCAGCAGTGATGTGTTCAAAGC 59.709 45.455 8.47 0.00 35.70 3.51
4 5 3.947196 ACTTCAGCAGTGATGTGTTCAAA 59.053 39.130 8.47 0.00 39.11 2.69
82 188 0.957888 GAGAGTTCTGGTGGCTTGCC 60.958 60.000 4.43 4.43 0.00 4.52
104 210 1.187087 AGGTTGGATGGTCGACTCTC 58.813 55.000 16.46 11.93 0.00 3.20
178 284 7.319646 TGGCAATATTAACACATCTTGGTTTC 58.680 34.615 0.00 0.00 0.00 2.78
182 288 8.442384 GTTTTTGGCAATATTAACACATCTTGG 58.558 33.333 0.00 0.00 0.00 3.61
201 307 1.374505 CCATGCTGGGCGTTTTTGG 60.375 57.895 0.00 0.00 32.67 3.28
225 331 5.560724 CGGTAGGGATTTTCATATGTCCAT 58.439 41.667 11.14 7.29 32.31 3.41
246 352 2.351726 CCTCTTTTCTAATTGTCCGCGG 59.648 50.000 22.12 22.12 0.00 6.46
248 354 4.330347 GTCTCCTCTTTTCTAATTGTCCGC 59.670 45.833 0.00 0.00 0.00 5.54
249 355 4.563184 CGTCTCCTCTTTTCTAATTGTCCG 59.437 45.833 0.00 0.00 0.00 4.79
260 366 4.939052 TGAAACTCTCGTCTCCTCTTTT 57.061 40.909 0.00 0.00 0.00 2.27
307 413 5.113383 ACATTTCGTAGGATAATTGCACGA 58.887 37.500 0.00 0.00 39.63 4.35
315 421 4.579454 CGAGGGACATTTCGTAGGATAA 57.421 45.455 0.00 0.00 32.44 1.75
349 455 4.507021 TGCATAACGTCGTGTAAGTTCAAA 59.493 37.500 0.00 0.00 31.83 2.69
353 459 4.300803 TCTTGCATAACGTCGTGTAAGTT 58.699 39.130 21.43 0.00 38.61 2.66
354 460 3.904571 TCTTGCATAACGTCGTGTAAGT 58.095 40.909 21.43 0.00 38.61 2.24
443 549 4.142730 GCTACTGGATGCTTTTGACAAGAG 60.143 45.833 1.36 1.36 0.00 2.85
446 552 2.483877 CGCTACTGGATGCTTTTGACAA 59.516 45.455 0.00 0.00 0.00 3.18
455 561 3.929948 GCGTGCGCTACTGGATGC 61.930 66.667 9.73 0.00 38.26 3.91
495 601 9.559958 GGTGTTCATTTTTATGTTCTCTGTATG 57.440 33.333 0.00 0.00 0.00 2.39
498 604 7.823745 AGGTGTTCATTTTTATGTTCTCTGT 57.176 32.000 0.00 0.00 0.00 3.41
500 606 7.014615 AGCAAGGTGTTCATTTTTATGTTCTCT 59.985 33.333 0.00 0.00 0.00 3.10
514 620 5.235850 TGGTTATTCTAGCAAGGTGTTCA 57.764 39.130 0.00 0.00 0.00 3.18
515 621 5.449177 GCATGGTTATTCTAGCAAGGTGTTC 60.449 44.000 0.00 0.00 0.00 3.18
517 623 3.947834 GCATGGTTATTCTAGCAAGGTGT 59.052 43.478 0.00 0.00 0.00 4.16
518 624 3.316308 GGCATGGTTATTCTAGCAAGGTG 59.684 47.826 0.00 0.00 0.00 4.00
519 625 3.555966 GGCATGGTTATTCTAGCAAGGT 58.444 45.455 0.00 0.00 0.00 3.50
545 651 5.474825 GTTGGTGGTTCTTTCTTTTTGTCA 58.525 37.500 0.00 0.00 0.00 3.58
563 669 8.650143 ATTACACATTTCTCATTAAGGTTGGT 57.350 30.769 0.00 0.00 0.00 3.67
640 760 6.079336 AGTGATGAGAATGAGATCCTCTGAT 58.921 40.000 0.00 0.00 0.00 2.90
680 800 5.185249 TCCTCTACAAGATGGTTGAGTACAC 59.815 44.000 0.00 0.00 38.45 2.90
722 842 3.958704 TCTTTTATTTGCGTGTGGTGTG 58.041 40.909 0.00 0.00 0.00 3.82
728 848 9.923786 GGTTTTATTTTTCTTTTATTTGCGTGT 57.076 25.926 0.00 0.00 0.00 4.49
744 864 6.295859 GGGCTTCCAAGATCAGGTTTTATTTT 60.296 38.462 0.00 0.00 0.00 1.82
772 893 6.016777 AGTCTCATTCTGTTTTGCTTACTTGG 60.017 38.462 0.00 0.00 0.00 3.61
809 937 2.874086 TCAGCAGTGATGTGTTGTTCAG 59.126 45.455 8.47 0.00 31.10 3.02
843 976 2.563086 GATTTGGACAACCTCGCGCG 62.563 60.000 26.76 26.76 37.04 6.86
844 977 1.134694 GATTTGGACAACCTCGCGC 59.865 57.895 0.00 0.00 37.04 6.86
845 978 0.953471 TGGATTTGGACAACCTCGCG 60.953 55.000 0.00 0.00 37.04 5.87
846 979 1.463674 ATGGATTTGGACAACCTCGC 58.536 50.000 0.00 0.00 37.04 5.03
913 1050 1.272480 TGGATGGTCGACTCTCTGGAA 60.272 52.381 16.46 0.00 0.00 3.53
953 1090 1.999295 TGGTTGATGGGAGATTGGGAA 59.001 47.619 0.00 0.00 0.00 3.97
954 1091 1.679981 TGGTTGATGGGAGATTGGGA 58.320 50.000 0.00 0.00 0.00 4.37
956 1093 3.634504 TGAATGGTTGATGGGAGATTGG 58.365 45.455 0.00 0.00 0.00 3.16
957 1094 5.413499 GTTTGAATGGTTGATGGGAGATTG 58.587 41.667 0.00 0.00 0.00 2.67
958 1095 4.467438 GGTTTGAATGGTTGATGGGAGATT 59.533 41.667 0.00 0.00 0.00 2.40
961 1098 2.497273 GGGTTTGAATGGTTGATGGGAG 59.503 50.000 0.00 0.00 0.00 4.30
1230 1466 4.430765 ATGGTGCCGTCGTCGTCC 62.431 66.667 0.71 1.83 35.01 4.79
1527 1763 2.519622 CCTGACCAGGCTCACCACA 61.520 63.158 2.75 0.00 42.44 4.17
1635 1871 1.810030 GTGGCCGTCCTCGTGATTC 60.810 63.158 0.00 0.00 35.01 2.52
1897 2136 2.676342 CCATGTGCCCGTAAGTACTTTC 59.324 50.000 14.49 7.86 0.00 2.62
1942 2187 8.929487 CCTCCTTTCATAGTTTTACCTCTCTAT 58.071 37.037 0.00 0.00 0.00 1.98
1963 2230 0.905357 CATCTTCACCGTTCCCTCCT 59.095 55.000 0.00 0.00 0.00 3.69
1976 2243 3.990469 CACATATACGACCCTGCATCTTC 59.010 47.826 0.00 0.00 0.00 2.87
2024 2318 6.676237 ACACCAAATCCACAAAATTGAAAC 57.324 33.333 0.00 0.00 0.00 2.78
2079 2373 5.005971 CAGACCAACAAGCAAATTGAACTTG 59.994 40.000 10.42 10.42 44.98 3.16
2086 2380 5.620654 CGATGATCAGACCAACAAGCAAATT 60.621 40.000 0.09 0.00 0.00 1.82
2087 2381 4.142534 CGATGATCAGACCAACAAGCAAAT 60.143 41.667 0.09 0.00 0.00 2.32
2088 2382 3.189080 CGATGATCAGACCAACAAGCAAA 59.811 43.478 0.09 0.00 0.00 3.68
2168 2495 6.906659 ACAATCATCAATCAAGAAGACACAC 58.093 36.000 0.00 0.00 0.00 3.82
2170 2497 7.335422 AGGTACAATCATCAATCAAGAAGACAC 59.665 37.037 0.00 0.00 0.00 3.67
2176 2503 8.677300 GCTTTAAGGTACAATCATCAATCAAGA 58.323 33.333 0.00 0.00 0.00 3.02
2177 2504 8.680903 AGCTTTAAGGTACAATCATCAATCAAG 58.319 33.333 0.00 0.00 0.00 3.02
2180 2507 7.433425 GCAAGCTTTAAGGTACAATCATCAATC 59.567 37.037 0.00 0.00 0.00 2.67
2181 2508 7.260603 GCAAGCTTTAAGGTACAATCATCAAT 58.739 34.615 0.00 0.00 0.00 2.57
2222 2555 3.766691 GACGACTGCCGGGCCTAA 61.767 66.667 17.97 0.00 43.93 2.69
2240 2573 2.438434 AGGAATGAAAGCGCCGGG 60.438 61.111 2.29 0.00 0.00 5.73
2256 2589 3.616379 GGTTGATGAGAAAAGAGAGCGAG 59.384 47.826 0.00 0.00 0.00 5.03
2262 2595 5.715070 ACTCGTAGGTTGATGAGAAAAGAG 58.285 41.667 0.00 0.00 36.20 2.85
2273 2606 2.531771 TGGATTGGACTCGTAGGTTGA 58.468 47.619 0.00 0.00 0.00 3.18
2280 2613 2.699954 GACACAATGGATTGGACTCGT 58.300 47.619 4.45 0.00 41.96 4.18
2303 2636 6.366332 GCCATTATGATCTAGTAACACCGAAG 59.634 42.308 0.00 0.00 0.00 3.79
2307 2640 4.389077 GCGCCATTATGATCTAGTAACACC 59.611 45.833 0.00 0.00 0.00 4.16
2422 2755 8.503458 AGTGGCATAATATGAGAAAGATATGC 57.497 34.615 4.14 6.95 38.53 3.14
2451 2784 9.912634 CTTTTGTGCATAAATTTCTCCTCTTTA 57.087 29.630 9.58 0.00 0.00 1.85
2469 2802 9.542462 TTGACATATATCCTACTACTTTTGTGC 57.458 33.333 0.00 0.00 0.00 4.57
2501 2834 5.468746 GTGGCACTGTAATTGAAAGTACTCA 59.531 40.000 11.13 0.00 31.27 3.41
2524 2857 1.588932 CACGCGCCATCTACATCGT 60.589 57.895 5.73 0.00 0.00 3.73
2572 2905 4.738252 CCAGCATGTTGATTTTCATGATCG 59.262 41.667 11.60 0.00 42.52 3.69
2616 2949 0.394352 ATCGACTTTGCCCCATCACC 60.394 55.000 0.00 0.00 0.00 4.02
2694 3027 0.377203 GGCTGGTGCTATTTGTACGC 59.623 55.000 0.00 0.00 39.59 4.42
2771 3104 8.627208 AAGAATTTTCTTTGAGCTGTCATCTA 57.373 30.769 0.00 0.00 44.70 1.98
2852 3185 6.312529 AGGGAGTACATCTTTGTATCCGATA 58.687 40.000 0.00 0.00 40.35 2.92
2853 3186 5.148502 AGGGAGTACATCTTTGTATCCGAT 58.851 41.667 0.00 0.00 40.35 4.18
2926 3259 7.907214 AGTGTATGTTCACTCATTTTACTCC 57.093 36.000 0.00 0.00 44.07 3.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.