Multiple sequence alignment - TraesCS5A01G230500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G230500 chr5A 100.000 4422 0 0 1 4422 445390915 445395336 0.000000e+00 8167.0
1 TraesCS5A01G230500 chr5A 93.007 143 10 0 2178 2320 154345669 154345527 4.480000e-50 209.0
2 TraesCS5A01G230500 chr5D 89.781 2006 92 45 212 2176 345849473 345847540 0.000000e+00 2464.0
3 TraesCS5A01G230500 chr5D 95.199 1333 41 12 2335 3656 345847532 345846212 0.000000e+00 2085.0
4 TraesCS5A01G230500 chr5D 85.504 407 45 8 4026 4420 345845047 345844643 3.180000e-111 412.0
5 TraesCS5A01G230500 chr5D 84.921 378 21 11 3676 4018 345845879 345845503 2.530000e-92 350.0
6 TraesCS5A01G230500 chr5B 90.870 1851 97 25 321 2150 405767110 405768909 0.000000e+00 2416.0
7 TraesCS5A01G230500 chr5B 94.495 1326 59 10 2311 3630 405768920 405770237 0.000000e+00 2032.0
8 TraesCS5A01G230500 chr5B 84.840 343 18 9 3679 3988 405770545 405770886 9.230000e-82 315.0
9 TraesCS5A01G230500 chr5B 95.620 137 5 1 2187 2322 516549228 516549092 7.450000e-53 219.0
10 TraesCS5A01G230500 chr6A 96.296 135 4 1 2181 2314 599263180 599263046 2.070000e-53 220.0
11 TraesCS5A01G230500 chr3A 96.241 133 5 0 2187 2319 19523806 19523674 7.450000e-53 219.0
12 TraesCS5A01G230500 chr3A 95.556 135 6 0 2180 2314 155540677 155540811 2.680000e-52 217.0
13 TraesCS5A01G230500 chr3A 94.928 138 6 1 2188 2324 677775271 677775408 9.630000e-52 215.0
14 TraesCS5A01G230500 chr1A 96.923 130 4 0 2186 2315 27289698 27289569 7.450000e-53 219.0
15 TraesCS5A01G230500 chr4B 96.212 132 5 0 2185 2316 210282755 210282886 2.680000e-52 217.0
16 TraesCS5A01G230500 chr4B 87.500 144 18 0 1304 1447 458459438 458459295 2.740000e-37 167.0
17 TraesCS5A01G230500 chr2A 92.466 146 9 2 2171 2315 764091559 764091415 1.610000e-49 207.0
18 TraesCS5A01G230500 chr4A 88.889 144 16 0 1304 1447 91470407 91470550 1.260000e-40 178.0
19 TraesCS5A01G230500 chr4D 87.500 144 18 0 1304 1447 373209815 373209672 2.740000e-37 167.0
20 TraesCS5A01G230500 chr1B 80.676 207 28 7 4223 4419 585673610 585673814 2.760000e-32 150.0
21 TraesCS5A01G230500 chr2D 82.581 155 22 3 40 191 155481126 155480974 9.980000e-27 132.0
22 TraesCS5A01G230500 chr7B 80.120 166 26 5 38 199 692613781 692613619 2.790000e-22 117.0
23 TraesCS5A01G230500 chr7D 84.932 73 11 0 95 167 131114359 131114431 1.710000e-09 75.0
24 TraesCS5A01G230500 chr7D 85.484 62 6 1 126 184 145776449 145776510 1.330000e-05 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G230500 chr5A 445390915 445395336 4421 False 8167.000000 8167 100.000000 1 4422 1 chr5A.!!$F1 4421
1 TraesCS5A01G230500 chr5D 345844643 345849473 4830 True 1327.750000 2464 88.851250 212 4420 4 chr5D.!!$R1 4208
2 TraesCS5A01G230500 chr5B 405767110 405770886 3776 False 1587.666667 2416 90.068333 321 3988 3 chr5B.!!$F1 3667

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
525 537 0.034059 CTAGAGCCCGGCGATCATTT 59.966 55.000 9.3 0.0 0.0 2.32 F
549 561 1.133982 CTCACGATCACTCCCACTCAG 59.866 57.143 0.0 0.0 0.0 3.35 F
1657 1692 0.672091 TCTCGCTGCCGCAAATTACA 60.672 50.000 0.0 0.0 35.3 2.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1497 1529 0.029035 TTAGACGATCGAGAAGGCGC 59.971 55.0 24.34 0.00 0.00 6.53 R
2300 2356 0.038892 TGCACGTACTTCCTCCGTTC 60.039 55.0 0.00 0.00 31.46 3.95 R
3428 3499 0.798776 CGATCTTGGATAATGCCGGC 59.201 55.0 22.73 22.73 0.00 6.13 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 1.585297 CTTTGCAGCCCTTTGGTTTG 58.415 50.000 0.00 0.00 0.00 2.93
20 21 0.908198 TTTGCAGCCCTTTGGTTTGT 59.092 45.000 0.00 0.00 0.00 2.83
21 22 0.908198 TTGCAGCCCTTTGGTTTGTT 59.092 45.000 0.00 0.00 0.00 2.83
22 23 0.177604 TGCAGCCCTTTGGTTTGTTG 59.822 50.000 0.00 0.00 0.00 3.33
23 24 0.532640 GCAGCCCTTTGGTTTGTTGG 60.533 55.000 0.00 0.00 0.00 3.77
24 25 1.118838 CAGCCCTTTGGTTTGTTGGA 58.881 50.000 0.00 0.00 0.00 3.53
25 26 1.484240 CAGCCCTTTGGTTTGTTGGAA 59.516 47.619 0.00 0.00 0.00 3.53
26 27 2.104622 CAGCCCTTTGGTTTGTTGGAAT 59.895 45.455 0.00 0.00 0.00 3.01
27 28 3.323403 CAGCCCTTTGGTTTGTTGGAATA 59.677 43.478 0.00 0.00 0.00 1.75
28 29 3.578282 AGCCCTTTGGTTTGTTGGAATAG 59.422 43.478 0.00 0.00 0.00 1.73
29 30 3.323691 GCCCTTTGGTTTGTTGGAATAGT 59.676 43.478 0.00 0.00 0.00 2.12
30 31 4.202315 GCCCTTTGGTTTGTTGGAATAGTT 60.202 41.667 0.00 0.00 0.00 2.24
31 32 5.011227 GCCCTTTGGTTTGTTGGAATAGTTA 59.989 40.000 0.00 0.00 0.00 2.24
32 33 6.687604 CCCTTTGGTTTGTTGGAATAGTTAG 58.312 40.000 0.00 0.00 0.00 2.34
33 34 6.156519 CCTTTGGTTTGTTGGAATAGTTAGC 58.843 40.000 0.00 0.00 0.00 3.09
34 35 6.239176 CCTTTGGTTTGTTGGAATAGTTAGCA 60.239 38.462 0.00 0.00 0.00 3.49
35 36 5.957842 TGGTTTGTTGGAATAGTTAGCAG 57.042 39.130 0.00 0.00 0.00 4.24
36 37 5.381757 TGGTTTGTTGGAATAGTTAGCAGT 58.618 37.500 0.00 0.00 0.00 4.40
37 38 5.472137 TGGTTTGTTGGAATAGTTAGCAGTC 59.528 40.000 0.00 0.00 0.00 3.51
38 39 5.472137 GGTTTGTTGGAATAGTTAGCAGTCA 59.528 40.000 0.00 0.00 0.00 3.41
39 40 6.016610 GGTTTGTTGGAATAGTTAGCAGTCAA 60.017 38.462 0.00 0.00 0.00 3.18
40 41 7.309194 GGTTTGTTGGAATAGTTAGCAGTCAAT 60.309 37.037 0.00 0.00 0.00 2.57
41 42 6.985188 TGTTGGAATAGTTAGCAGTCAATC 57.015 37.500 0.00 0.00 0.00 2.67
42 43 5.880332 TGTTGGAATAGTTAGCAGTCAATCC 59.120 40.000 0.00 0.00 0.00 3.01
43 44 5.957771 TGGAATAGTTAGCAGTCAATCCT 57.042 39.130 0.00 0.00 0.00 3.24
44 45 6.313519 TGGAATAGTTAGCAGTCAATCCTT 57.686 37.500 0.00 0.00 0.00 3.36
45 46 6.349300 TGGAATAGTTAGCAGTCAATCCTTC 58.651 40.000 0.00 0.00 0.00 3.46
46 47 6.070251 TGGAATAGTTAGCAGTCAATCCTTCA 60.070 38.462 0.00 0.00 0.00 3.02
47 48 6.258947 GGAATAGTTAGCAGTCAATCCTTCAC 59.741 42.308 0.00 0.00 0.00 3.18
48 49 4.623932 AGTTAGCAGTCAATCCTTCACA 57.376 40.909 0.00 0.00 0.00 3.58
49 50 4.973168 AGTTAGCAGTCAATCCTTCACAA 58.027 39.130 0.00 0.00 0.00 3.33
50 51 5.564550 AGTTAGCAGTCAATCCTTCACAAT 58.435 37.500 0.00 0.00 0.00 2.71
51 52 6.006449 AGTTAGCAGTCAATCCTTCACAATT 58.994 36.000 0.00 0.00 0.00 2.32
52 53 6.150140 AGTTAGCAGTCAATCCTTCACAATTC 59.850 38.462 0.00 0.00 0.00 2.17
53 54 4.401022 AGCAGTCAATCCTTCACAATTCA 58.599 39.130 0.00 0.00 0.00 2.57
54 55 4.828939 AGCAGTCAATCCTTCACAATTCAA 59.171 37.500 0.00 0.00 0.00 2.69
55 56 5.302568 AGCAGTCAATCCTTCACAATTCAAA 59.697 36.000 0.00 0.00 0.00 2.69
56 57 5.632347 GCAGTCAATCCTTCACAATTCAAAG 59.368 40.000 0.00 0.00 0.00 2.77
57 58 6.154445 CAGTCAATCCTTCACAATTCAAAGG 58.846 40.000 4.36 4.36 40.80 3.11
125 126 7.528996 TGAATCAAATGACATGTCTTTTCCT 57.471 32.000 27.76 18.50 35.58 3.36
126 127 8.634335 TGAATCAAATGACATGTCTTTTCCTA 57.366 30.769 27.76 19.37 35.58 2.94
127 128 9.246670 TGAATCAAATGACATGTCTTTTCCTAT 57.753 29.630 27.76 20.33 35.58 2.57
131 132 9.958180 TCAAATGACATGTCTTTTCCTATAGAA 57.042 29.630 27.76 6.46 35.58 2.10
161 162 9.356433 GAGATACATGTCATCTCACTTCATATG 57.644 37.037 24.95 0.00 45.17 1.78
162 163 8.312564 AGATACATGTCATCTCACTTCATATGG 58.687 37.037 0.00 0.00 0.00 2.74
163 164 5.061853 ACATGTCATCTCACTTCATATGGC 58.938 41.667 2.13 0.00 0.00 4.40
164 165 5.163227 ACATGTCATCTCACTTCATATGGCT 60.163 40.000 2.13 0.00 0.00 4.75
165 166 5.363562 TGTCATCTCACTTCATATGGCTT 57.636 39.130 2.13 0.00 0.00 4.35
166 167 5.748402 TGTCATCTCACTTCATATGGCTTT 58.252 37.500 2.13 0.00 0.00 3.51
167 168 6.888105 TGTCATCTCACTTCATATGGCTTTA 58.112 36.000 2.13 0.00 0.00 1.85
168 169 7.512130 TGTCATCTCACTTCATATGGCTTTAT 58.488 34.615 2.13 0.00 0.00 1.40
169 170 7.994911 TGTCATCTCACTTCATATGGCTTTATT 59.005 33.333 2.13 0.00 0.00 1.40
170 171 8.502387 GTCATCTCACTTCATATGGCTTTATTC 58.498 37.037 2.13 0.00 0.00 1.75
171 172 8.212995 TCATCTCACTTCATATGGCTTTATTCA 58.787 33.333 2.13 0.00 0.00 2.57
172 173 8.504815 CATCTCACTTCATATGGCTTTATTCAG 58.495 37.037 2.13 0.00 0.00 3.02
173 174 7.795047 TCTCACTTCATATGGCTTTATTCAGA 58.205 34.615 2.13 0.00 0.00 3.27
174 175 8.435187 TCTCACTTCATATGGCTTTATTCAGAT 58.565 33.333 2.13 0.00 0.00 2.90
175 176 8.387190 TCACTTCATATGGCTTTATTCAGATG 57.613 34.615 2.13 0.00 34.87 2.90
176 177 8.212995 TCACTTCATATGGCTTTATTCAGATGA 58.787 33.333 2.13 0.00 39.07 2.92
177 178 9.011095 CACTTCATATGGCTTTATTCAGATGAT 57.989 33.333 2.13 0.00 40.04 2.45
186 187 9.896645 TGGCTTTATTCAGATGATATTCCTATC 57.103 33.333 0.00 0.00 35.30 2.08
187 188 9.336171 GGCTTTATTCAGATGATATTCCTATCC 57.664 37.037 0.00 0.00 34.03 2.59
196 197 9.973450 CAGATGATATTCCTATCCTATAAACCG 57.027 37.037 0.00 0.00 34.03 4.44
197 198 9.937876 AGATGATATTCCTATCCTATAAACCGA 57.062 33.333 0.00 0.00 34.03 4.69
200 201 9.316594 TGATATTCCTATCCTATAAACCGAACA 57.683 33.333 0.00 0.00 34.03 3.18
203 204 8.904099 ATTCCTATCCTATAAACCGAACAAAG 57.096 34.615 0.00 0.00 0.00 2.77
204 205 6.285990 TCCTATCCTATAAACCGAACAAAGC 58.714 40.000 0.00 0.00 0.00 3.51
205 206 5.469084 CCTATCCTATAAACCGAACAAAGCC 59.531 44.000 0.00 0.00 0.00 4.35
206 207 4.289238 TCCTATAAACCGAACAAAGCCA 57.711 40.909 0.00 0.00 0.00 4.75
207 208 4.258543 TCCTATAAACCGAACAAAGCCAG 58.741 43.478 0.00 0.00 0.00 4.85
208 209 4.007659 CCTATAAACCGAACAAAGCCAGT 58.992 43.478 0.00 0.00 0.00 4.00
209 210 4.457949 CCTATAAACCGAACAAAGCCAGTT 59.542 41.667 0.00 0.00 0.00 3.16
210 211 5.644636 CCTATAAACCGAACAAAGCCAGTTA 59.355 40.000 0.00 0.00 0.00 2.24
211 212 6.317893 CCTATAAACCGAACAAAGCCAGTTAT 59.682 38.462 0.00 0.00 0.00 1.89
212 213 4.929819 AAACCGAACAAAGCCAGTTATT 57.070 36.364 0.00 0.00 0.00 1.40
213 214 4.929819 AACCGAACAAAGCCAGTTATTT 57.070 36.364 0.00 0.00 0.00 1.40
214 215 4.929819 ACCGAACAAAGCCAGTTATTTT 57.070 36.364 0.00 0.00 0.00 1.82
215 216 4.866921 ACCGAACAAAGCCAGTTATTTTC 58.133 39.130 0.00 0.00 0.00 2.29
216 217 4.583073 ACCGAACAAAGCCAGTTATTTTCT 59.417 37.500 0.00 0.00 0.00 2.52
217 218 5.068591 ACCGAACAAAGCCAGTTATTTTCTT 59.931 36.000 0.00 0.00 0.00 2.52
226 227 8.512966 AAGCCAGTTATTTTCTTCTAGAATCC 57.487 34.615 5.44 0.00 33.67 3.01
230 231 9.618890 CCAGTTATTTTCTTCTAGAATCCATGA 57.381 33.333 5.44 0.00 33.67 3.07
242 243 7.440198 TCTAGAATCCATGACAGATGAATCAC 58.560 38.462 0.00 0.00 0.00 3.06
250 251 4.572909 TGACAGATGAATCACCACAAGAG 58.427 43.478 0.00 0.00 0.00 2.85
251 252 3.937706 GACAGATGAATCACCACAAGAGG 59.062 47.826 0.00 0.00 0.00 3.69
259 262 5.411361 TGAATCACCACAAGAGGAAAATACG 59.589 40.000 0.00 0.00 0.00 3.06
307 310 5.319043 TCAAAGAGGTCCCAACAAAGTAT 57.681 39.130 0.00 0.00 0.00 2.12
308 311 5.313712 TCAAAGAGGTCCCAACAAAGTATC 58.686 41.667 0.00 0.00 0.00 2.24
310 313 5.520748 AAGAGGTCCCAACAAAGTATCAT 57.479 39.130 0.00 0.00 0.00 2.45
311 314 6.636454 AAGAGGTCCCAACAAAGTATCATA 57.364 37.500 0.00 0.00 0.00 2.15
313 316 7.027874 AGAGGTCCCAACAAAGTATCATAAA 57.972 36.000 0.00 0.00 0.00 1.40
314 317 7.466804 AGAGGTCCCAACAAAGTATCATAAAA 58.533 34.615 0.00 0.00 0.00 1.52
381 389 7.871973 ACTATCAGTGCAGATGAATCATAAGAC 59.128 37.037 5.69 0.00 0.00 3.01
426 434 5.359194 TTCTACCAATCAAAGAGCCCTAG 57.641 43.478 0.00 0.00 0.00 3.02
449 457 0.600255 AGTGTATCATAAGCCCGCGC 60.600 55.000 0.00 0.00 0.00 6.86
509 521 1.871408 CGTAGGCCTGAAGCATGCTAG 60.871 57.143 23.00 15.69 46.50 3.42
525 537 0.034059 CTAGAGCCCGGCGATCATTT 59.966 55.000 9.30 0.00 0.00 2.32
536 548 2.609459 GGCGATCATTTTCACTCACGAT 59.391 45.455 0.00 0.00 0.00 3.73
547 559 1.135257 CACTCACGATCACTCCCACTC 60.135 57.143 0.00 0.00 0.00 3.51
549 561 1.133982 CTCACGATCACTCCCACTCAG 59.866 57.143 0.00 0.00 0.00 3.35
550 562 1.177401 CACGATCACTCCCACTCAGA 58.823 55.000 0.00 0.00 0.00 3.27
612 624 3.043713 ATGCGTGCGACCACTGTG 61.044 61.111 0.00 0.00 39.86 3.66
735 755 4.648626 TCGCTTGCCTGCCTGCTT 62.649 61.111 0.00 0.00 0.00 3.91
736 756 4.415332 CGCTTGCCTGCCTGCTTG 62.415 66.667 0.00 0.00 0.00 4.01
737 757 4.736896 GCTTGCCTGCCTGCTTGC 62.737 66.667 0.00 0.00 0.00 4.01
762 782 4.742201 CCGTCTCCACCACTGCCG 62.742 72.222 0.00 0.00 0.00 5.69
930 950 1.608627 ACTACCGTCCCTCCACCAC 60.609 63.158 0.00 0.00 0.00 4.16
931 951 2.284112 TACCGTCCCTCCACCACC 60.284 66.667 0.00 0.00 0.00 4.61
932 952 3.163231 TACCGTCCCTCCACCACCA 62.163 63.158 0.00 0.00 0.00 4.17
933 953 4.016706 CCGTCCCTCCACCACCAC 62.017 72.222 0.00 0.00 0.00 4.16
934 954 4.016706 CGTCCCTCCACCACCACC 62.017 72.222 0.00 0.00 0.00 4.61
935 955 2.852075 GTCCCTCCACCACCACCA 60.852 66.667 0.00 0.00 0.00 4.17
936 956 2.852075 TCCCTCCACCACCACCAC 60.852 66.667 0.00 0.00 0.00 4.16
937 957 3.966543 CCCTCCACCACCACCACC 61.967 72.222 0.00 0.00 0.00 4.61
938 958 2.854032 CCTCCACCACCACCACCT 60.854 66.667 0.00 0.00 0.00 4.00
939 959 2.750350 CTCCACCACCACCACCTC 59.250 66.667 0.00 0.00 0.00 3.85
940 960 2.852075 TCCACCACCACCACCTCC 60.852 66.667 0.00 0.00 0.00 4.30
950 970 2.203998 CCACCTCCTCCACCACCT 60.204 66.667 0.00 0.00 0.00 4.00
1143 1169 3.316356 CTACGCGTGCGACGTTGTG 62.316 63.158 24.59 5.83 44.73 3.33
1464 1496 7.144000 CCAAGGTAATACTACTACGTGATTCC 58.856 42.308 0.00 0.00 0.00 3.01
1485 1517 3.621715 CCATGAGCCGATCATCATATGTG 59.378 47.826 1.90 1.04 46.01 3.21
1496 1528 1.910688 TCATATGTGTTTACGCGCGA 58.089 45.000 39.36 17.83 0.00 5.87
1497 1529 1.849829 TCATATGTGTTTACGCGCGAG 59.150 47.619 39.36 10.29 0.00 5.03
1531 1563 9.158233 TCGATCGTCTAAAACCATAAATTCTTT 57.842 29.630 15.94 0.00 0.00 2.52
1579 1611 6.846505 TCCCTAATTATCACCTCACTCATCTT 59.153 38.462 0.00 0.00 0.00 2.40
1624 1659 1.103803 CCTCGTCCTTGCTGCTACTA 58.896 55.000 0.00 0.00 0.00 1.82
1633 1668 3.873952 CCTTGCTGCTACTAGTTTGATCC 59.126 47.826 0.00 0.00 0.00 3.36
1641 1676 5.239744 TGCTACTAGTTTGATCCTCGATCTC 59.760 44.000 0.00 0.00 39.56 2.75
1657 1692 0.672091 TCTCGCTGCCGCAAATTACA 60.672 50.000 0.00 0.00 35.30 2.41
1661 1696 1.665735 CGCTGCCGCAAATTACAACTT 60.666 47.619 0.00 0.00 35.30 2.66
1681 1716 9.665719 ACAACTTCCAAACTGTTAATTTGATTT 57.334 25.926 9.95 0.00 39.01 2.17
1726 1761 2.054232 TAGCTAAGCTAGGTGTCGCT 57.946 50.000 14.58 14.58 40.44 4.93
1736 1771 3.506455 GCTAGGTGTCGCTCCTATAATGA 59.494 47.826 7.72 0.00 37.01 2.57
1751 1786 4.685169 ATAATGACAAAGACGTGCAAGG 57.315 40.909 4.26 0.00 0.00 3.61
1777 1812 2.616376 TCCACAATGGAACAGTTTCACG 59.384 45.455 0.00 0.00 45.00 4.35
1809 1855 3.431415 ACAGGCTACTACTGTGATCACA 58.569 45.455 26.33 26.33 46.67 3.58
1810 1856 3.193691 ACAGGCTACTACTGTGATCACAC 59.806 47.826 24.56 12.58 46.67 3.82
1947 1998 2.424601 TCAATTTCACTAGCCTGCATGC 59.575 45.455 11.82 11.82 0.00 4.06
1977 2028 4.208746 TCTAGGTAGCTTGCTAGGAAGAC 58.791 47.826 26.36 16.09 0.00 3.01
1991 2044 5.923684 GCTAGGAAGACTTTCATTATCGAGG 59.076 44.000 0.00 0.00 34.90 4.63
1997 2050 8.178313 GGAAGACTTTCATTATCGAGGAAAAAG 58.822 37.037 0.00 0.12 34.90 2.27
2026 2079 7.104939 ACGCATACTAACCTGTGGTAAAAATA 58.895 34.615 0.00 0.00 33.12 1.40
2027 2080 7.771826 ACGCATACTAACCTGTGGTAAAAATAT 59.228 33.333 0.00 0.00 33.12 1.28
2047 2103 9.723601 AAAATATCAATGCAAAATAACCTGTGT 57.276 25.926 0.00 0.00 0.00 3.72
2048 2104 9.723601 AAATATCAATGCAAAATAACCTGTGTT 57.276 25.926 0.00 0.00 38.52 3.32
2116 2172 3.510388 TTAGACATGCTCTTCGTCCTG 57.490 47.619 0.00 0.00 0.00 3.86
2163 2219 6.840780 TGCTGATATTTCATCTCGGAGATA 57.159 37.500 19.53 5.83 32.12 1.98
2164 2220 6.861144 TGCTGATATTTCATCTCGGAGATAG 58.139 40.000 19.53 13.81 32.12 2.08
2165 2221 6.127507 TGCTGATATTTCATCTCGGAGATAGG 60.128 42.308 19.53 9.29 32.12 2.57
2166 2222 6.096141 GCTGATATTTCATCTCGGAGATAGGA 59.904 42.308 19.53 11.41 32.12 2.94
2167 2223 7.201902 GCTGATATTTCATCTCGGAGATAGGAT 60.202 40.741 19.53 14.65 32.12 3.24
2168 2224 8.601047 TGATATTTCATCTCGGAGATAGGATT 57.399 34.615 19.53 8.60 32.12 3.01
2169 2225 9.700831 TGATATTTCATCTCGGAGATAGGATTA 57.299 33.333 19.53 10.15 32.12 1.75
2173 2229 9.717942 ATTTCATCTCGGAGATAGGATTAAAAG 57.282 33.333 19.53 4.53 32.12 2.27
2174 2230 7.233389 TCATCTCGGAGATAGGATTAAAAGG 57.767 40.000 19.53 4.05 32.12 3.11
2175 2231 6.782988 TCATCTCGGAGATAGGATTAAAAGGT 59.217 38.462 19.53 0.00 32.12 3.50
2176 2232 6.651975 TCTCGGAGATAGGATTAAAAGGTC 57.348 41.667 2.97 0.00 33.89 3.85
2177 2233 6.134055 TCTCGGAGATAGGATTAAAAGGTCA 58.866 40.000 2.97 0.00 33.89 4.02
2178 2234 6.040616 TCTCGGAGATAGGATTAAAAGGTCAC 59.959 42.308 2.97 0.00 33.89 3.67
2179 2235 5.897824 TCGGAGATAGGATTAAAAGGTCACT 59.102 40.000 0.00 0.00 0.00 3.41
2180 2236 6.383147 TCGGAGATAGGATTAAAAGGTCACTT 59.617 38.462 0.00 0.00 38.99 3.16
2181 2237 7.562454 TCGGAGATAGGATTAAAAGGTCACTTA 59.438 37.037 0.00 0.00 35.41 2.24
2182 2238 8.202137 CGGAGATAGGATTAAAAGGTCACTTAA 58.798 37.037 0.00 0.00 35.41 1.85
2183 2239 9.901172 GGAGATAGGATTAAAAGGTCACTTAAA 57.099 33.333 0.00 0.00 35.41 1.52
2193 2249 7.578310 AAAAGGTCACTTAAAAAGTACTCCC 57.422 36.000 0.00 0.00 40.46 4.30
2194 2250 6.511017 AAGGTCACTTAAAAAGTACTCCCT 57.489 37.500 0.00 0.00 40.46 4.20
2195 2251 6.111669 AGGTCACTTAAAAAGTACTCCCTC 57.888 41.667 0.00 0.00 40.46 4.30
2196 2252 5.012871 AGGTCACTTAAAAAGTACTCCCTCC 59.987 44.000 0.00 0.00 40.46 4.30
2197 2253 4.928020 GTCACTTAAAAAGTACTCCCTCCG 59.072 45.833 0.00 0.00 40.46 4.63
2198 2254 4.590222 TCACTTAAAAAGTACTCCCTCCGT 59.410 41.667 0.00 0.00 40.46 4.69
2199 2255 5.070847 TCACTTAAAAAGTACTCCCTCCGTT 59.929 40.000 0.00 0.00 40.46 4.44
2200 2256 5.407691 CACTTAAAAAGTACTCCCTCCGTTC 59.592 44.000 0.00 0.00 40.46 3.95
2201 2257 3.413846 AAAAAGTACTCCCTCCGTTCC 57.586 47.619 0.00 0.00 0.00 3.62
2202 2258 2.019807 AAAGTACTCCCTCCGTTCCA 57.980 50.000 0.00 0.00 0.00 3.53
2203 2259 2.019807 AAGTACTCCCTCCGTTCCAA 57.980 50.000 0.00 0.00 0.00 3.53
2204 2260 2.019807 AGTACTCCCTCCGTTCCAAA 57.980 50.000 0.00 0.00 0.00 3.28
2205 2261 2.547990 AGTACTCCCTCCGTTCCAAAT 58.452 47.619 0.00 0.00 0.00 2.32
2206 2262 2.910977 AGTACTCCCTCCGTTCCAAATT 59.089 45.455 0.00 0.00 0.00 1.82
2207 2263 4.098894 AGTACTCCCTCCGTTCCAAATTA 58.901 43.478 0.00 0.00 0.00 1.40
2208 2264 3.345508 ACTCCCTCCGTTCCAAATTAC 57.654 47.619 0.00 0.00 0.00 1.89
2209 2265 2.910977 ACTCCCTCCGTTCCAAATTACT 59.089 45.455 0.00 0.00 0.00 2.24
2210 2266 3.329814 ACTCCCTCCGTTCCAAATTACTT 59.670 43.478 0.00 0.00 0.00 2.24
2211 2267 3.681593 TCCCTCCGTTCCAAATTACTTG 58.318 45.455 0.00 0.00 34.52 3.16
2212 2268 3.073356 TCCCTCCGTTCCAAATTACTTGT 59.927 43.478 0.00 0.00 32.65 3.16
2213 2269 3.439129 CCCTCCGTTCCAAATTACTTGTC 59.561 47.826 0.00 0.00 32.65 3.18
2214 2270 4.324267 CCTCCGTTCCAAATTACTTGTCT 58.676 43.478 0.00 0.00 32.65 3.41
2215 2271 4.760204 CCTCCGTTCCAAATTACTTGTCTT 59.240 41.667 0.00 0.00 32.65 3.01
2216 2272 5.334879 CCTCCGTTCCAAATTACTTGTCTTG 60.335 44.000 0.00 0.00 32.65 3.02
2217 2273 5.369833 TCCGTTCCAAATTACTTGTCTTGA 58.630 37.500 0.00 0.00 32.65 3.02
2218 2274 5.823570 TCCGTTCCAAATTACTTGTCTTGAA 59.176 36.000 0.00 0.00 32.65 2.69
2219 2275 6.488683 TCCGTTCCAAATTACTTGTCTTGAAT 59.511 34.615 0.00 0.00 32.65 2.57
2220 2276 7.013846 TCCGTTCCAAATTACTTGTCTTGAATT 59.986 33.333 0.00 0.00 32.65 2.17
2221 2277 7.651704 CCGTTCCAAATTACTTGTCTTGAATTT 59.348 33.333 0.00 0.00 32.97 1.82
2222 2278 8.479280 CGTTCCAAATTACTTGTCTTGAATTTG 58.521 33.333 10.52 10.52 43.82 2.32
2223 2279 9.313118 GTTCCAAATTACTTGTCTTGAATTTGT 57.687 29.630 14.45 0.00 43.18 2.83
2224 2280 9.528018 TTCCAAATTACTTGTCTTGAATTTGTC 57.472 29.630 14.45 0.00 43.18 3.18
2225 2281 8.912988 TCCAAATTACTTGTCTTGAATTTGTCT 58.087 29.630 14.45 0.00 43.18 3.41
2233 2289 9.429359 ACTTGTCTTGAATTTGTCTAGATACAG 57.571 33.333 0.00 0.00 39.77 2.74
2234 2290 9.645059 CTTGTCTTGAATTTGTCTAGATACAGA 57.355 33.333 0.00 0.00 39.77 3.41
2235 2291 9.645059 TTGTCTTGAATTTGTCTAGATACAGAG 57.355 33.333 0.00 0.00 39.77 3.35
2236 2292 8.253810 TGTCTTGAATTTGTCTAGATACAGAGG 58.746 37.037 0.00 0.00 39.77 3.69
2237 2293 8.254508 GTCTTGAATTTGTCTAGATACAGAGGT 58.745 37.037 0.00 0.00 39.77 3.85
2238 2294 9.475620 TCTTGAATTTGTCTAGATACAGAGGTA 57.524 33.333 0.00 0.00 33.79 3.08
2254 2310 7.661536 ACAGAGGTATCTAGCACTAAAATGA 57.338 36.000 0.00 0.00 33.22 2.57
2255 2311 7.721402 ACAGAGGTATCTAGCACTAAAATGAG 58.279 38.462 0.00 0.00 33.22 2.90
2256 2312 7.343316 ACAGAGGTATCTAGCACTAAAATGAGT 59.657 37.037 0.00 0.00 33.22 3.41
2257 2313 7.865385 CAGAGGTATCTAGCACTAAAATGAGTC 59.135 40.741 0.00 0.00 33.22 3.36
2258 2314 7.782644 AGAGGTATCTAGCACTAAAATGAGTCT 59.217 37.037 0.00 0.00 32.54 3.24
2259 2315 8.998277 AGGTATCTAGCACTAAAATGAGTCTA 57.002 34.615 0.00 0.00 0.00 2.59
2260 2316 9.073475 AGGTATCTAGCACTAAAATGAGTCTAG 57.927 37.037 0.00 0.00 33.29 2.43
2261 2317 9.069082 GGTATCTAGCACTAAAATGAGTCTAGA 57.931 37.037 11.59 11.59 38.76 2.43
2265 2321 9.628500 TCTAGCACTAAAATGAGTCTAGATACA 57.372 33.333 0.00 0.00 34.65 2.29
2268 2324 8.364142 AGCACTAAAATGAGTCTAGATACATCC 58.636 37.037 12.66 0.00 0.00 3.51
2269 2325 7.327275 GCACTAAAATGAGTCTAGATACATCCG 59.673 40.741 12.66 6.68 0.00 4.18
2270 2326 8.353684 CACTAAAATGAGTCTAGATACATCCGT 58.646 37.037 12.66 7.10 0.00 4.69
2271 2327 9.570468 ACTAAAATGAGTCTAGATACATCCGTA 57.430 33.333 12.66 6.93 0.00 4.02
2285 2341 7.776618 ATACATCCGTATCTAGACAAATCCA 57.223 36.000 0.00 0.00 32.66 3.41
2286 2342 6.479972 ACATCCGTATCTAGACAAATCCAA 57.520 37.500 0.00 0.00 0.00 3.53
2287 2343 6.516718 ACATCCGTATCTAGACAAATCCAAG 58.483 40.000 0.00 0.00 0.00 3.61
2288 2344 6.323996 ACATCCGTATCTAGACAAATCCAAGA 59.676 38.462 0.00 0.00 0.00 3.02
2289 2345 6.145338 TCCGTATCTAGACAAATCCAAGAC 57.855 41.667 0.00 0.00 0.00 3.01
2290 2346 5.655090 TCCGTATCTAGACAAATCCAAGACA 59.345 40.000 0.00 0.00 0.00 3.41
2291 2347 6.153851 TCCGTATCTAGACAAATCCAAGACAA 59.846 38.462 0.00 0.00 0.00 3.18
2292 2348 6.477033 CCGTATCTAGACAAATCCAAGACAAG 59.523 42.308 0.00 0.00 0.00 3.16
2293 2349 7.036220 CGTATCTAGACAAATCCAAGACAAGT 58.964 38.462 0.00 0.00 0.00 3.16
2294 2350 8.188799 CGTATCTAGACAAATCCAAGACAAGTA 58.811 37.037 0.00 0.00 0.00 2.24
2295 2351 9.871238 GTATCTAGACAAATCCAAGACAAGTAA 57.129 33.333 0.00 0.00 0.00 2.24
2297 2353 9.965902 ATCTAGACAAATCCAAGACAAGTAATT 57.034 29.630 0.00 0.00 0.00 1.40
2298 2354 9.436957 TCTAGACAAATCCAAGACAAGTAATTC 57.563 33.333 0.00 0.00 0.00 2.17
2299 2355 7.133891 AGACAAATCCAAGACAAGTAATTCG 57.866 36.000 0.00 0.00 0.00 3.34
2300 2356 6.149474 AGACAAATCCAAGACAAGTAATTCGG 59.851 38.462 0.00 0.00 0.00 4.30
2301 2357 6.001460 ACAAATCCAAGACAAGTAATTCGGA 58.999 36.000 0.00 0.00 0.00 4.55
2302 2358 6.488683 ACAAATCCAAGACAAGTAATTCGGAA 59.511 34.615 0.00 0.00 0.00 4.30
2303 2359 6.496338 AATCCAAGACAAGTAATTCGGAAC 57.504 37.500 0.00 0.00 0.00 3.62
2321 2377 0.108804 ACGGAGGAAGTACGTGCATG 60.109 55.000 6.38 3.82 39.64 4.06
2359 2417 5.409826 GGAGTTTCTTGAGTGATACAAGGTG 59.590 44.000 0.00 0.00 43.11 4.00
2363 2421 5.545063 TCTTGAGTGATACAAGGTGAACA 57.455 39.130 0.00 0.00 43.11 3.18
2364 2422 6.114187 TCTTGAGTGATACAAGGTGAACAT 57.886 37.500 0.00 0.00 43.11 2.71
2605 2670 9.730705 ACAATAATGAACTCCATAGATACATGG 57.269 33.333 0.00 0.00 45.93 3.66
2607 2672 6.445451 AATGAACTCCATAGATACATGGCT 57.555 37.500 0.00 0.00 44.47 4.75
2762 2827 5.537674 ACCAGCCTGATCATCATTTTAATCC 59.462 40.000 0.00 0.00 0.00 3.01
2782 2847 2.480419 CCACCAATTATAGCTAGCGTGC 59.520 50.000 9.55 0.00 0.00 5.34
2804 2869 1.868251 GTGCTCCGTTCTACGAGCG 60.868 63.158 14.22 0.00 46.05 5.03
2825 2890 4.963953 GCGCTATTGTATTAACAGCTTGTG 59.036 41.667 0.00 0.00 36.83 3.33
3205 3270 4.779733 ATCACGGCGGAGGAGGGT 62.780 66.667 13.24 0.00 0.00 4.34
3424 3495 2.399356 GCAGTGCTCGGTTTAGCCC 61.399 63.158 8.18 0.00 42.05 5.19
3612 3683 7.352079 AGAGTTTTATGCATCCCTTTTATGG 57.648 36.000 0.19 0.00 0.00 2.74
3656 3727 5.334105 GGATGCTACGCAAATGTATACCTTG 60.334 44.000 0.00 5.53 43.62 3.61
3657 3728 3.874543 TGCTACGCAAATGTATACCTTGG 59.125 43.478 13.70 4.44 34.76 3.61
3658 3729 3.303791 GCTACGCAAATGTATACCTTGGC 60.304 47.826 9.56 9.56 0.00 4.52
3659 3730 2.717390 ACGCAAATGTATACCTTGGCA 58.283 42.857 17.29 0.00 0.00 4.92
3660 3731 2.682856 ACGCAAATGTATACCTTGGCAG 59.317 45.455 17.29 12.83 0.00 4.85
3661 3732 2.942376 CGCAAATGTATACCTTGGCAGA 59.058 45.455 17.29 0.00 0.00 4.26
3662 3733 3.002656 CGCAAATGTATACCTTGGCAGAG 59.997 47.826 17.29 1.56 0.00 3.35
3663 3734 3.316308 GCAAATGTATACCTTGGCAGAGG 59.684 47.826 13.61 12.35 42.75 3.69
3664 3735 3.864789 AATGTATACCTTGGCAGAGGG 57.135 47.619 16.56 10.13 41.31 4.30
3665 3736 1.507140 TGTATACCTTGGCAGAGGGG 58.493 55.000 16.56 8.06 41.31 4.79
3666 3737 0.765510 GTATACCTTGGCAGAGGGGG 59.234 60.000 16.56 6.02 41.31 5.40
3708 4092 0.464452 CTTCATACGGGGAGGGTGAC 59.536 60.000 0.00 0.00 0.00 3.67
3795 4179 2.158957 TCTGGAGTTGGAGTTGTGTCAC 60.159 50.000 0.00 0.00 0.00 3.67
3797 4181 1.472728 GGAGTTGGAGTTGTGTCACGT 60.473 52.381 0.00 0.00 0.00 4.49
3798 4182 2.277084 GAGTTGGAGTTGTGTCACGTT 58.723 47.619 0.00 0.00 0.00 3.99
3800 4184 0.730265 TTGGAGTTGTGTCACGTTGC 59.270 50.000 0.00 0.00 0.00 4.17
3819 4232 1.260033 GCATCTAGCTGATCACGTTGC 59.740 52.381 0.00 0.00 41.15 4.17
3836 4249 4.083643 ACGTTGCATTCACAGATTCAGAAG 60.084 41.667 0.00 0.00 0.00 2.85
3843 4256 0.792640 ACAGATTCAGAAGCGTTGCG 59.207 50.000 0.00 0.00 0.00 4.85
3885 4298 2.649331 AGTTGAGCAAATGCATGAGC 57.351 45.000 14.02 14.02 45.16 4.26
3935 4352 7.038587 TGTGCTATTTAAGGTGGAGTTTCTAGA 60.039 37.037 0.00 0.00 0.00 2.43
3936 4353 7.278203 GTGCTATTTAAGGTGGAGTTTCTAGAC 59.722 40.741 0.00 0.00 0.00 2.59
3937 4354 6.476053 GCTATTTAAGGTGGAGTTTCTAGACG 59.524 42.308 0.00 0.00 0.00 4.18
3940 4357 3.157750 AGGTGGAGTTTCTAGACGTCT 57.842 47.619 23.66 23.66 0.00 4.18
3955 4372 0.249447 CGTCTGTTGAGTCCTGTGCA 60.249 55.000 0.00 0.00 0.00 4.57
3964 4382 2.438021 TGAGTCCTGTGCAAGTTAAGGT 59.562 45.455 0.00 0.00 0.00 3.50
3966 4384 3.477530 AGTCCTGTGCAAGTTAAGGTTC 58.522 45.455 0.00 0.00 0.00 3.62
3973 4391 4.095782 TGTGCAAGTTAAGGTTCTTGTGTC 59.904 41.667 0.00 0.00 41.83 3.67
3988 4406 3.452755 TGTGTCTGTGTTCACCTGTAG 57.547 47.619 0.37 0.00 34.14 2.74
3993 4411 2.367567 TCTGTGTTCACCTGTAGAACCC 59.632 50.000 0.00 0.00 43.57 4.11
4005 4423 4.887655 CCTGTAGAACCCTTTTGTGTTCTT 59.112 41.667 9.84 0.00 46.77 2.52
4015 4433 9.816787 AACCCTTTTGTGTTCTTCCTTTATATA 57.183 29.630 0.00 0.00 0.00 0.86
4071 4937 2.036475 GCAGAGAGGAACTTGTCAGTCA 59.964 50.000 0.00 0.00 41.55 3.41
4087 4953 6.283694 TGTCAGTCATATGCTCTTATTCCAC 58.716 40.000 0.00 0.00 0.00 4.02
4093 4959 6.989169 GTCATATGCTCTTATTCCACAAGTCT 59.011 38.462 0.00 0.00 0.00 3.24
4094 4960 6.988580 TCATATGCTCTTATTCCACAAGTCTG 59.011 38.462 0.00 0.00 0.00 3.51
4106 4972 4.060038 CACAAGTCTGTGTGTCTACCTT 57.940 45.455 0.00 0.00 46.68 3.50
4135 5004 4.413520 ACATATGTCTCCTTGGCCATAGTT 59.586 41.667 6.09 0.00 0.00 2.24
4145 5014 4.276926 CCTTGGCCATAGTTAGATCTTTGC 59.723 45.833 6.09 0.00 0.00 3.68
4197 5066 7.469537 TCTTTATCTTTCTTTCTCCTCTCGT 57.530 36.000 0.00 0.00 0.00 4.18
4198 5067 7.316640 TCTTTATCTTTCTTTCTCCTCTCGTG 58.683 38.462 0.00 0.00 0.00 4.35
4225 5094 3.062466 GGCAAAGCCTTCGTCCCC 61.062 66.667 0.00 0.00 46.69 4.81
4236 5106 1.254975 TTCGTCCCCTGATCTTCGCA 61.255 55.000 0.00 0.00 0.00 5.10
4253 5123 4.880537 AGGCGAGCGCTGGATTCG 62.881 66.667 24.54 17.39 41.60 3.34
4262 5132 1.443828 GCTGGATTCGTCTCCCCTC 59.556 63.158 4.03 0.00 34.12 4.30
4263 5133 1.045911 GCTGGATTCGTCTCCCCTCT 61.046 60.000 4.03 0.00 34.12 3.69
4265 5135 0.335019 TGGATTCGTCTCCCCTCTGA 59.665 55.000 4.03 0.00 34.12 3.27
4302 5172 0.186143 GGTGATGGGGAAGGGAATCC 59.814 60.000 0.00 0.00 38.86 3.01
4313 5183 0.909610 AGGGAATCCTCGTGCCTTGA 60.910 55.000 0.00 0.00 39.80 3.02
4317 5187 1.205893 GAATCCTCGTGCCTTGACTCT 59.794 52.381 0.00 0.00 0.00 3.24
4319 5189 1.079543 CCTCGTGCCTTGACTCTGG 60.080 63.158 0.00 0.00 0.00 3.86
4320 5190 1.668294 CTCGTGCCTTGACTCTGGT 59.332 57.895 0.00 0.00 0.00 4.00
4330 5200 5.594725 TGCCTTGACTCTGGTTAGTAGATAG 59.405 44.000 0.00 0.00 0.00 2.08
4334 5204 7.507616 CCTTGACTCTGGTTAGTAGATAGGATT 59.492 40.741 0.00 0.00 0.00 3.01
4335 5205 8.840200 TTGACTCTGGTTAGTAGATAGGATTT 57.160 34.615 0.00 0.00 0.00 2.17
4336 5206 8.840200 TGACTCTGGTTAGTAGATAGGATTTT 57.160 34.615 0.00 0.00 0.00 1.82
4337 5207 9.931698 TGACTCTGGTTAGTAGATAGGATTTTA 57.068 33.333 0.00 0.00 0.00 1.52
4349 5224 1.017387 GGATTTTAGTGCTCGCAGGG 58.983 55.000 0.00 0.00 0.00 4.45
4351 5226 0.328258 ATTTTAGTGCTCGCAGGGGT 59.672 50.000 0.00 0.00 0.00 4.95
4369 5244 1.003839 TGACACTTGGACGGATGGC 60.004 57.895 0.00 0.00 0.00 4.40
4391 5269 2.611518 CCGCTTCTCGAGTCAATCTTT 58.388 47.619 13.13 0.00 41.67 2.52
4395 5273 3.126000 GCTTCTCGAGTCAATCTTTTGGG 59.874 47.826 13.13 0.00 33.44 4.12
4396 5274 2.699954 TCTCGAGTCAATCTTTTGGGC 58.300 47.619 13.13 0.00 33.44 5.36
4404 5282 4.018597 AGTCAATCTTTTGGGCTCTGATCT 60.019 41.667 0.00 0.00 33.44 2.75
4407 5285 2.977914 TCTTTTGGGCTCTGATCTTCG 58.022 47.619 0.00 0.00 0.00 3.79
4420 5298 3.565516 TGATCTTCGTCAAGTTCGTCTG 58.434 45.455 0.00 0.00 32.80 3.51
4421 5299 1.767289 TCTTCGTCAAGTTCGTCTGC 58.233 50.000 0.00 0.00 0.00 4.26
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.134431 ACAAACCAAAGGGCTGCAAAG 60.134 47.619 0.50 0.00 37.90 2.77
4 5 0.532640 CCAACAAACCAAAGGGCTGC 60.533 55.000 0.00 0.00 37.90 5.25
6 7 1.872773 TTCCAACAAACCAAAGGGCT 58.127 45.000 0.00 0.00 37.90 5.19
8 9 5.545063 AACTATTCCAACAAACCAAAGGG 57.455 39.130 0.00 0.00 41.29 3.95
9 10 6.156519 GCTAACTATTCCAACAAACCAAAGG 58.843 40.000 0.00 0.00 0.00 3.11
10 11 6.744112 TGCTAACTATTCCAACAAACCAAAG 58.256 36.000 0.00 0.00 0.00 2.77
11 12 6.322712 ACTGCTAACTATTCCAACAAACCAAA 59.677 34.615 0.00 0.00 0.00 3.28
12 13 5.830991 ACTGCTAACTATTCCAACAAACCAA 59.169 36.000 0.00 0.00 0.00 3.67
13 14 5.381757 ACTGCTAACTATTCCAACAAACCA 58.618 37.500 0.00 0.00 0.00 3.67
14 15 5.472137 TGACTGCTAACTATTCCAACAAACC 59.528 40.000 0.00 0.00 0.00 3.27
15 16 6.554334 TGACTGCTAACTATTCCAACAAAC 57.446 37.500 0.00 0.00 0.00 2.93
16 17 7.094377 GGATTGACTGCTAACTATTCCAACAAA 60.094 37.037 0.00 0.00 0.00 2.83
17 18 6.374333 GGATTGACTGCTAACTATTCCAACAA 59.626 38.462 0.00 0.00 0.00 2.83
18 19 5.880332 GGATTGACTGCTAACTATTCCAACA 59.120 40.000 0.00 0.00 0.00 3.33
19 20 6.116126 AGGATTGACTGCTAACTATTCCAAC 58.884 40.000 0.00 0.00 0.00 3.77
20 21 6.313519 AGGATTGACTGCTAACTATTCCAA 57.686 37.500 0.00 0.00 0.00 3.53
21 22 5.957771 AGGATTGACTGCTAACTATTCCA 57.042 39.130 0.00 0.00 0.00 3.53
22 23 6.258947 GTGAAGGATTGACTGCTAACTATTCC 59.741 42.308 0.00 0.00 0.00 3.01
23 24 6.818644 TGTGAAGGATTGACTGCTAACTATTC 59.181 38.462 0.00 0.00 31.74 1.75
24 25 6.711277 TGTGAAGGATTGACTGCTAACTATT 58.289 36.000 0.00 0.00 31.74 1.73
25 26 6.299805 TGTGAAGGATTGACTGCTAACTAT 57.700 37.500 0.00 0.00 31.74 2.12
26 27 5.738619 TGTGAAGGATTGACTGCTAACTA 57.261 39.130 0.00 0.00 31.74 2.24
27 28 4.623932 TGTGAAGGATTGACTGCTAACT 57.376 40.909 0.00 0.00 31.74 2.24
28 29 5.886960 ATTGTGAAGGATTGACTGCTAAC 57.113 39.130 0.00 0.00 31.74 2.34
29 30 6.003326 TGAATTGTGAAGGATTGACTGCTAA 58.997 36.000 0.00 0.00 31.74 3.09
30 31 5.559770 TGAATTGTGAAGGATTGACTGCTA 58.440 37.500 0.00 0.00 31.74 3.49
31 32 4.401022 TGAATTGTGAAGGATTGACTGCT 58.599 39.130 0.00 0.00 31.74 4.24
32 33 4.771590 TGAATTGTGAAGGATTGACTGC 57.228 40.909 0.00 0.00 31.74 4.40
33 34 6.016024 TCCTTTGAATTGTGAAGGATTGACTG 60.016 38.462 8.84 0.00 42.90 3.51
34 35 6.070656 TCCTTTGAATTGTGAAGGATTGACT 58.929 36.000 8.84 0.00 42.90 3.41
35 36 6.331369 TCCTTTGAATTGTGAAGGATTGAC 57.669 37.500 8.84 0.00 42.90 3.18
36 37 6.975196 TTCCTTTGAATTGTGAAGGATTGA 57.025 33.333 12.20 0.00 45.99 2.57
37 38 8.436046 TTTTTCCTTTGAATTGTGAAGGATTG 57.564 30.769 12.20 0.00 45.99 2.67
99 100 9.246670 AGGAAAAGACATGTCATTTGATTCATA 57.753 29.630 28.29 0.00 31.62 2.15
100 101 8.130671 AGGAAAAGACATGTCATTTGATTCAT 57.869 30.769 28.29 16.30 31.62 2.57
101 102 7.528996 AGGAAAAGACATGTCATTTGATTCA 57.471 32.000 28.29 0.00 31.62 2.57
105 106 9.958180 TTCTATAGGAAAAGACATGTCATTTGA 57.042 29.630 28.29 17.16 31.62 2.69
135 136 9.356433 CATATGAAGTGAGATGACATGTATCTC 57.644 37.037 24.04 24.04 46.82 2.75
136 137 8.312564 CCATATGAAGTGAGATGACATGTATCT 58.687 37.037 3.65 14.05 37.59 1.98
137 138 7.064371 GCCATATGAAGTGAGATGACATGTATC 59.936 40.741 3.65 2.87 0.00 2.24
138 139 6.877855 GCCATATGAAGTGAGATGACATGTAT 59.122 38.462 3.65 0.00 0.00 2.29
139 140 6.042437 AGCCATATGAAGTGAGATGACATGTA 59.958 38.462 3.65 0.00 0.00 2.29
140 141 5.061853 GCCATATGAAGTGAGATGACATGT 58.938 41.667 3.65 0.00 0.00 3.21
141 142 5.306394 AGCCATATGAAGTGAGATGACATG 58.694 41.667 3.65 0.00 0.00 3.21
142 143 5.563876 AGCCATATGAAGTGAGATGACAT 57.436 39.130 3.65 0.00 0.00 3.06
143 144 5.363562 AAGCCATATGAAGTGAGATGACA 57.636 39.130 3.65 0.00 0.00 3.58
144 145 7.976135 ATAAAGCCATATGAAGTGAGATGAC 57.024 36.000 3.65 0.00 0.00 3.06
145 146 8.212995 TGAATAAAGCCATATGAAGTGAGATGA 58.787 33.333 3.65 0.00 0.00 2.92
146 147 8.387190 TGAATAAAGCCATATGAAGTGAGATG 57.613 34.615 3.65 0.00 0.00 2.90
147 148 8.435187 TCTGAATAAAGCCATATGAAGTGAGAT 58.565 33.333 3.65 0.00 0.00 2.75
148 149 7.795047 TCTGAATAAAGCCATATGAAGTGAGA 58.205 34.615 3.65 0.00 0.00 3.27
149 150 8.504815 CATCTGAATAAAGCCATATGAAGTGAG 58.495 37.037 3.65 0.00 0.00 3.51
150 151 8.212995 TCATCTGAATAAAGCCATATGAAGTGA 58.787 33.333 3.65 0.00 0.00 3.41
151 152 8.387190 TCATCTGAATAAAGCCATATGAAGTG 57.613 34.615 3.65 0.00 0.00 3.16
160 161 9.896645 GATAGGAATATCATCTGAATAAAGCCA 57.103 33.333 0.00 0.00 0.00 4.75
161 162 9.336171 GGATAGGAATATCATCTGAATAAAGCC 57.664 37.037 0.00 0.00 0.00 4.35
170 171 9.973450 CGGTTTATAGGATAGGAATATCATCTG 57.027 37.037 0.00 0.00 0.00 2.90
171 172 9.937876 TCGGTTTATAGGATAGGAATATCATCT 57.062 33.333 0.00 0.00 0.00 2.90
174 175 9.316594 TGTTCGGTTTATAGGATAGGAATATCA 57.683 33.333 0.00 0.00 0.00 2.15
177 178 9.991906 CTTTGTTCGGTTTATAGGATAGGAATA 57.008 33.333 0.00 0.00 0.00 1.75
178 179 7.444487 GCTTTGTTCGGTTTATAGGATAGGAAT 59.556 37.037 0.00 0.00 0.00 3.01
179 180 6.764560 GCTTTGTTCGGTTTATAGGATAGGAA 59.235 38.462 0.00 0.00 0.00 3.36
180 181 6.285990 GCTTTGTTCGGTTTATAGGATAGGA 58.714 40.000 0.00 0.00 0.00 2.94
181 182 5.469084 GGCTTTGTTCGGTTTATAGGATAGG 59.531 44.000 0.00 0.00 0.00 2.57
182 183 6.053005 TGGCTTTGTTCGGTTTATAGGATAG 58.947 40.000 0.00 0.00 0.00 2.08
183 184 5.991861 TGGCTTTGTTCGGTTTATAGGATA 58.008 37.500 0.00 0.00 0.00 2.59
184 185 4.850680 TGGCTTTGTTCGGTTTATAGGAT 58.149 39.130 0.00 0.00 0.00 3.24
185 186 4.258543 CTGGCTTTGTTCGGTTTATAGGA 58.741 43.478 0.00 0.00 0.00 2.94
186 187 4.007659 ACTGGCTTTGTTCGGTTTATAGG 58.992 43.478 0.00 0.00 0.00 2.57
187 188 5.622770 AACTGGCTTTGTTCGGTTTATAG 57.377 39.130 0.00 0.00 0.00 1.31
188 189 7.690952 AATAACTGGCTTTGTTCGGTTTATA 57.309 32.000 0.00 0.00 34.66 0.98
189 190 6.584185 AATAACTGGCTTTGTTCGGTTTAT 57.416 33.333 0.00 0.00 34.66 1.40
190 191 6.394025 AAATAACTGGCTTTGTTCGGTTTA 57.606 33.333 0.00 0.00 34.66 2.01
191 192 4.929819 AATAACTGGCTTTGTTCGGTTT 57.070 36.364 0.00 0.00 34.66 3.27
192 193 4.929819 AAATAACTGGCTTTGTTCGGTT 57.070 36.364 0.00 0.00 36.55 4.44
193 194 4.583073 AGAAAATAACTGGCTTTGTTCGGT 59.417 37.500 0.00 0.00 0.00 4.69
194 195 5.121221 AGAAAATAACTGGCTTTGTTCGG 57.879 39.130 0.00 0.00 0.00 4.30
195 196 6.438763 AGAAGAAAATAACTGGCTTTGTTCG 58.561 36.000 0.00 0.00 37.39 3.95
196 197 8.784043 TCTAGAAGAAAATAACTGGCTTTGTTC 58.216 33.333 0.00 0.00 34.33 3.18
197 198 8.691661 TCTAGAAGAAAATAACTGGCTTTGTT 57.308 30.769 0.00 0.00 0.00 2.83
198 199 8.691661 TTCTAGAAGAAAATAACTGGCTTTGT 57.308 30.769 0.00 0.00 29.99 2.83
199 200 9.780413 GATTCTAGAAGAAAATAACTGGCTTTG 57.220 33.333 11.53 0.00 37.82 2.77
200 201 8.961634 GGATTCTAGAAGAAAATAACTGGCTTT 58.038 33.333 11.53 0.00 37.82 3.51
201 202 8.109634 TGGATTCTAGAAGAAAATAACTGGCTT 58.890 33.333 11.53 0.00 37.82 4.35
202 203 7.633789 TGGATTCTAGAAGAAAATAACTGGCT 58.366 34.615 11.53 0.00 37.82 4.75
203 204 7.865706 TGGATTCTAGAAGAAAATAACTGGC 57.134 36.000 11.53 0.00 37.82 4.85
204 205 9.618890 TCATGGATTCTAGAAGAAAATAACTGG 57.381 33.333 11.53 0.00 37.82 4.00
210 211 9.339850 CATCTGTCATGGATTCTAGAAGAAAAT 57.660 33.333 11.53 0.00 37.82 1.82
211 212 8.542926 TCATCTGTCATGGATTCTAGAAGAAAA 58.457 33.333 11.53 0.00 37.82 2.29
212 213 8.082672 TCATCTGTCATGGATTCTAGAAGAAA 57.917 34.615 11.53 0.00 37.82 2.52
213 214 7.666063 TCATCTGTCATGGATTCTAGAAGAA 57.334 36.000 11.53 0.00 38.78 2.52
214 215 7.666063 TTCATCTGTCATGGATTCTAGAAGA 57.334 36.000 11.53 0.00 0.00 2.87
215 216 8.148999 TGATTCATCTGTCATGGATTCTAGAAG 58.851 37.037 11.53 0.00 0.00 2.85
216 217 7.930325 GTGATTCATCTGTCATGGATTCTAGAA 59.070 37.037 7.82 7.82 0.00 2.10
217 218 7.440198 GTGATTCATCTGTCATGGATTCTAGA 58.560 38.462 0.00 0.00 0.00 2.43
226 227 4.939439 TCTTGTGGTGATTCATCTGTCATG 59.061 41.667 0.00 0.00 0.00 3.07
230 231 3.584406 TCCTCTTGTGGTGATTCATCTGT 59.416 43.478 0.00 0.00 0.00 3.41
233 234 5.964958 TTTTCCTCTTGTGGTGATTCATC 57.035 39.130 0.00 0.00 0.00 2.92
242 243 8.433421 AATACATACGTATTTTCCTCTTGTGG 57.567 34.615 5.03 0.00 44.27 4.17
272 275 7.295672 TGGGACCTCTTTGATTGATATAGGATT 59.704 37.037 0.00 0.00 0.00 3.01
273 276 6.794493 TGGGACCTCTTTGATTGATATAGGAT 59.206 38.462 0.00 0.00 0.00 3.24
274 277 6.150332 TGGGACCTCTTTGATTGATATAGGA 58.850 40.000 0.00 0.00 0.00 2.94
275 278 6.439636 TGGGACCTCTTTGATTGATATAGG 57.560 41.667 0.00 0.00 0.00 2.57
276 279 7.282585 TGTTGGGACCTCTTTGATTGATATAG 58.717 38.462 0.00 0.00 0.00 1.31
277 280 7.206789 TGTTGGGACCTCTTTGATTGATATA 57.793 36.000 0.00 0.00 0.00 0.86
278 281 6.078456 TGTTGGGACCTCTTTGATTGATAT 57.922 37.500 0.00 0.00 0.00 1.63
281 284 3.874383 TGTTGGGACCTCTTTGATTGA 57.126 42.857 0.00 0.00 0.00 2.57
286 289 5.070001 TGATACTTTGTTGGGACCTCTTTG 58.930 41.667 0.00 0.00 0.00 2.77
352 356 7.876936 ATGATTCATCTGCACTGATAGTTTT 57.123 32.000 0.00 0.00 0.00 2.43
426 434 2.287009 GCGGGCTTATGATACACTTTGC 60.287 50.000 0.00 0.00 0.00 3.68
474 486 2.414161 GCCTACGATTTGGTGTTGCTTC 60.414 50.000 0.00 0.00 0.00 3.86
477 489 0.170339 GGCCTACGATTTGGTGTTGC 59.830 55.000 0.00 0.00 0.00 4.17
509 521 1.095228 TGAAAATGATCGCCGGGCTC 61.095 55.000 18.34 9.45 0.00 4.70
525 537 1.272490 GTGGGAGTGATCGTGAGTGAA 59.728 52.381 0.00 0.00 0.00 3.18
536 548 1.203174 TGGTGATCTGAGTGGGAGTGA 60.203 52.381 0.00 0.00 0.00 3.41
547 559 2.513204 CGGCTGGCTGGTGATCTG 60.513 66.667 0.00 0.00 0.00 2.90
612 624 3.702555 GTGTCGTGCGGTCTGTGC 61.703 66.667 0.00 0.00 0.00 4.57
730 750 2.430244 CGGCAAGCAAGCAAGCAG 60.430 61.111 10.15 3.46 36.85 4.24
731 751 3.198236 GACGGCAAGCAAGCAAGCA 62.198 57.895 10.15 0.00 36.85 3.91
732 752 2.429739 GACGGCAAGCAAGCAAGC 60.430 61.111 2.78 0.00 35.83 4.01
733 753 1.208614 GAGACGGCAAGCAAGCAAG 59.791 57.895 0.00 0.00 35.83 4.01
734 754 2.260869 GGAGACGGCAAGCAAGCAA 61.261 57.895 0.00 0.00 35.83 3.91
735 755 2.669569 GGAGACGGCAAGCAAGCA 60.670 61.111 0.00 0.00 35.83 3.91
736 756 2.669569 TGGAGACGGCAAGCAAGC 60.670 61.111 0.00 0.00 0.00 4.01
737 757 2.328099 GGTGGAGACGGCAAGCAAG 61.328 63.158 0.00 0.00 0.00 4.01
785 805 2.110352 CGGGGCCTTTTTATCGCGT 61.110 57.895 5.77 0.00 0.00 6.01
842 862 2.746803 CGGTCGCCTTTTAAGCCCG 61.747 63.158 0.00 0.00 0.00 6.13
843 863 1.366854 CTCGGTCGCCTTTTAAGCCC 61.367 60.000 0.00 0.00 0.00 5.19
844 864 0.390735 TCTCGGTCGCCTTTTAAGCC 60.391 55.000 0.00 0.00 0.00 4.35
845 865 1.128136 GTTCTCGGTCGCCTTTTAAGC 59.872 52.381 0.00 0.00 0.00 3.09
930 950 2.529136 TGGTGGAGGAGGTGGTGG 60.529 66.667 0.00 0.00 0.00 4.61
931 951 2.750350 GTGGTGGAGGAGGTGGTG 59.250 66.667 0.00 0.00 0.00 4.17
932 952 2.529389 GGTGGTGGAGGAGGTGGT 60.529 66.667 0.00 0.00 0.00 4.16
933 953 2.203998 AGGTGGTGGAGGAGGTGG 60.204 66.667 0.00 0.00 0.00 4.61
934 954 2.294078 GGAGGTGGTGGAGGAGGTG 61.294 68.421 0.00 0.00 0.00 4.00
935 955 2.122954 GGAGGTGGTGGAGGAGGT 59.877 66.667 0.00 0.00 0.00 3.85
936 956 2.689034 GGGAGGTGGTGGAGGAGG 60.689 72.222 0.00 0.00 0.00 4.30
937 957 2.689034 GGGGAGGTGGTGGAGGAG 60.689 72.222 0.00 0.00 0.00 3.69
938 958 4.348495 GGGGGAGGTGGTGGAGGA 62.348 72.222 0.00 0.00 0.00 3.71
939 959 4.354943 AGGGGGAGGTGGTGGAGG 62.355 72.222 0.00 0.00 0.00 4.30
940 960 2.689034 GAGGGGGAGGTGGTGGAG 60.689 72.222 0.00 0.00 0.00 3.86
950 970 4.348495 GAGGTGGGTGGAGGGGGA 62.348 72.222 0.00 0.00 0.00 4.81
1454 1486 1.107945 TCGGCTCATGGAATCACGTA 58.892 50.000 0.00 0.00 0.00 3.57
1455 1487 0.465705 ATCGGCTCATGGAATCACGT 59.534 50.000 0.00 0.00 0.00 4.49
1456 1488 1.143305 GATCGGCTCATGGAATCACG 58.857 55.000 0.00 0.00 0.00 4.35
1464 1496 4.251268 ACACATATGATGATCGGCTCATG 58.749 43.478 10.38 5.54 44.83 3.07
1496 1528 0.814410 TAGACGATCGAGAAGGCGCT 60.814 55.000 24.34 7.73 0.00 5.92
1497 1529 0.029035 TTAGACGATCGAGAAGGCGC 59.971 55.000 24.34 0.00 0.00 6.53
1531 1563 2.436469 AAGATGGCGCATGCGTGA 60.436 55.556 37.54 25.70 44.10 4.35
1579 1611 0.605319 GGACAAGACCACCAATCGCA 60.605 55.000 0.00 0.00 0.00 5.10
1624 1659 2.028130 AGCGAGATCGAGGATCAAACT 58.972 47.619 6.39 0.00 41.12 2.66
1681 1716 2.896044 TGCCACCATGCACATAAAAAGA 59.104 40.909 0.00 0.00 36.04 2.52
1723 1758 4.207224 CACGTCTTTGTCATTATAGGAGCG 59.793 45.833 0.00 0.00 0.00 5.03
1726 1761 5.079689 TGCACGTCTTTGTCATTATAGGA 57.920 39.130 0.00 0.00 0.00 2.94
1736 1771 0.179094 TCGACCTTGCACGTCTTTGT 60.179 50.000 10.54 0.00 0.00 2.83
1773 1808 0.824109 CCTGTAGGCAAGATCCGTGA 59.176 55.000 0.00 0.00 0.00 4.35
1805 1851 2.049888 TTGGCACTGTGAATGTGTGA 57.950 45.000 12.86 0.00 37.70 3.58
1806 1852 2.859538 GTTTTGGCACTGTGAATGTGTG 59.140 45.455 12.86 0.00 37.70 3.82
1807 1853 2.495270 TGTTTTGGCACTGTGAATGTGT 59.505 40.909 12.86 0.00 37.70 3.72
1809 1855 2.495270 TGTGTTTTGGCACTGTGAATGT 59.505 40.909 12.86 0.00 39.89 2.71
1810 1856 3.162202 TGTGTTTTGGCACTGTGAATG 57.838 42.857 12.86 0.00 39.89 2.67
1811 1857 3.883830 TTGTGTTTTGGCACTGTGAAT 57.116 38.095 12.86 0.00 39.89 2.57
1812 1858 3.194329 TCATTGTGTTTTGGCACTGTGAA 59.806 39.130 12.86 0.00 39.89 3.18
1813 1859 2.757314 TCATTGTGTTTTGGCACTGTGA 59.243 40.909 12.86 0.00 39.89 3.58
1814 1860 3.162202 TCATTGTGTTTTGGCACTGTG 57.838 42.857 2.76 2.76 39.89 3.66
1816 1862 3.931468 TGTTTCATTGTGTTTTGGCACTG 59.069 39.130 0.00 0.00 39.89 3.66
1820 1870 5.793026 TTCTTGTTTCATTGTGTTTTGGC 57.207 34.783 0.00 0.00 0.00 4.52
1947 1998 2.035321 GCAAGCTACCTAGAGGCTACAG 59.965 54.545 0.00 0.00 39.32 2.74
1977 2028 7.251281 GTTCCCTTTTTCCTCGATAATGAAAG 58.749 38.462 0.00 0.00 30.41 2.62
1991 2044 4.698780 AGGTTAGTATGCGTTCCCTTTTTC 59.301 41.667 0.00 0.00 0.00 2.29
1997 2050 2.277084 CACAGGTTAGTATGCGTTCCC 58.723 52.381 0.00 0.00 0.00 3.97
2026 2079 9.723601 AATTAACACAGGTTATTTTGCATTGAT 57.276 25.926 0.00 0.00 39.15 2.57
2105 2161 2.820787 AGTAGAACCACAGGACGAAGAG 59.179 50.000 0.00 0.00 0.00 2.85
2111 2167 3.018149 AGATCGAGTAGAACCACAGGAC 58.982 50.000 0.00 0.00 0.00 3.85
2116 2172 3.549221 GCTGCTAGATCGAGTAGAACCAC 60.549 52.174 21.85 3.09 31.30 4.16
2151 2207 6.998802 ACCTTTTAATCCTATCTCCGAGATG 58.001 40.000 19.46 10.07 35.37 2.90
2167 2223 9.123902 GGGAGTACTTTTTAAGTGACCTTTTAA 57.876 33.333 0.00 0.00 42.84 1.52
2168 2224 8.496916 AGGGAGTACTTTTTAAGTGACCTTTTA 58.503 33.333 0.00 0.00 42.84 1.52
2169 2225 7.351952 AGGGAGTACTTTTTAAGTGACCTTTT 58.648 34.615 0.00 0.00 42.84 2.27
2170 2226 6.907961 AGGGAGTACTTTTTAAGTGACCTTT 58.092 36.000 0.00 0.00 42.84 3.11
2171 2227 6.465464 GGAGGGAGTACTTTTTAAGTGACCTT 60.465 42.308 0.00 0.63 42.84 3.50
2172 2228 5.012871 GGAGGGAGTACTTTTTAAGTGACCT 59.987 44.000 0.00 4.65 42.84 3.85
2173 2229 5.243981 GGAGGGAGTACTTTTTAAGTGACC 58.756 45.833 0.00 3.55 42.84 4.02
2174 2230 4.928020 CGGAGGGAGTACTTTTTAAGTGAC 59.072 45.833 0.00 0.00 42.84 3.67
2175 2231 4.590222 ACGGAGGGAGTACTTTTTAAGTGA 59.410 41.667 0.00 0.00 42.84 3.41
2176 2232 4.891260 ACGGAGGGAGTACTTTTTAAGTG 58.109 43.478 0.00 0.00 42.84 3.16
2177 2233 5.512060 GGAACGGAGGGAGTACTTTTTAAGT 60.512 44.000 0.00 0.00 45.40 2.24
2178 2234 4.934001 GGAACGGAGGGAGTACTTTTTAAG 59.066 45.833 0.00 0.00 0.00 1.85
2179 2235 4.347583 TGGAACGGAGGGAGTACTTTTTAA 59.652 41.667 0.00 0.00 0.00 1.52
2180 2236 3.903090 TGGAACGGAGGGAGTACTTTTTA 59.097 43.478 0.00 0.00 0.00 1.52
2181 2237 2.707257 TGGAACGGAGGGAGTACTTTTT 59.293 45.455 0.00 0.00 0.00 1.94
2182 2238 2.332117 TGGAACGGAGGGAGTACTTTT 58.668 47.619 0.00 0.00 0.00 2.27
2183 2239 2.019807 TGGAACGGAGGGAGTACTTT 57.980 50.000 0.00 0.00 0.00 2.66
2184 2240 2.019807 TTGGAACGGAGGGAGTACTT 57.980 50.000 0.00 0.00 0.00 2.24
2185 2241 2.019807 TTTGGAACGGAGGGAGTACT 57.980 50.000 0.00 0.00 0.00 2.73
2186 2242 3.345508 AATTTGGAACGGAGGGAGTAC 57.654 47.619 0.00 0.00 0.00 2.73
2187 2243 4.098894 AGTAATTTGGAACGGAGGGAGTA 58.901 43.478 0.00 0.00 0.00 2.59
2188 2244 2.910977 AGTAATTTGGAACGGAGGGAGT 59.089 45.455 0.00 0.00 0.00 3.85
2189 2245 3.629142 AGTAATTTGGAACGGAGGGAG 57.371 47.619 0.00 0.00 0.00 4.30
2190 2246 3.073356 ACAAGTAATTTGGAACGGAGGGA 59.927 43.478 0.00 0.00 41.25 4.20
2191 2247 3.418047 ACAAGTAATTTGGAACGGAGGG 58.582 45.455 0.00 0.00 41.25 4.30
2192 2248 4.324267 AGACAAGTAATTTGGAACGGAGG 58.676 43.478 0.00 0.00 41.25 4.30
2193 2249 5.468746 TCAAGACAAGTAATTTGGAACGGAG 59.531 40.000 0.00 0.00 41.25 4.63
2194 2250 5.369833 TCAAGACAAGTAATTTGGAACGGA 58.630 37.500 0.00 0.00 41.25 4.69
2195 2251 5.682943 TCAAGACAAGTAATTTGGAACGG 57.317 39.130 0.00 0.00 41.25 4.44
2196 2252 8.479280 CAAATTCAAGACAAGTAATTTGGAACG 58.521 33.333 10.17 0.00 41.93 3.95
2197 2253 9.313118 ACAAATTCAAGACAAGTAATTTGGAAC 57.687 29.630 18.33 0.00 46.31 3.62
2198 2254 9.528018 GACAAATTCAAGACAAGTAATTTGGAA 57.472 29.630 18.33 0.00 46.31 3.53
2199 2255 8.912988 AGACAAATTCAAGACAAGTAATTTGGA 58.087 29.630 18.33 1.48 46.31 3.53
2207 2263 9.429359 CTGTATCTAGACAAATTCAAGACAAGT 57.571 33.333 0.00 0.00 0.00 3.16
2208 2264 9.645059 TCTGTATCTAGACAAATTCAAGACAAG 57.355 33.333 0.00 0.00 0.00 3.16
2209 2265 9.645059 CTCTGTATCTAGACAAATTCAAGACAA 57.355 33.333 0.00 0.00 0.00 3.18
2210 2266 8.253810 CCTCTGTATCTAGACAAATTCAAGACA 58.746 37.037 0.00 0.00 0.00 3.41
2211 2267 8.254508 ACCTCTGTATCTAGACAAATTCAAGAC 58.745 37.037 0.00 0.00 0.00 3.01
2212 2268 8.367660 ACCTCTGTATCTAGACAAATTCAAGA 57.632 34.615 0.00 0.00 0.00 3.02
2228 2284 9.368416 TCATTTTAGTGCTAGATACCTCTGTAT 57.632 33.333 0.00 0.00 40.41 2.29
2229 2285 8.762481 TCATTTTAGTGCTAGATACCTCTGTA 57.238 34.615 0.00 0.00 32.66 2.74
2230 2286 7.343316 ACTCATTTTAGTGCTAGATACCTCTGT 59.657 37.037 0.00 0.00 32.66 3.41
2231 2287 7.721402 ACTCATTTTAGTGCTAGATACCTCTG 58.279 38.462 0.00 0.00 32.66 3.35
2232 2288 7.782644 AGACTCATTTTAGTGCTAGATACCTCT 59.217 37.037 0.00 0.00 35.39 3.69
2233 2289 7.947282 AGACTCATTTTAGTGCTAGATACCTC 58.053 38.462 0.00 0.00 0.00 3.85
2234 2290 7.906199 AGACTCATTTTAGTGCTAGATACCT 57.094 36.000 0.00 0.00 0.00 3.08
2235 2291 9.069082 TCTAGACTCATTTTAGTGCTAGATACC 57.931 37.037 0.00 0.00 34.69 2.73
2239 2295 9.628500 TGTATCTAGACTCATTTTAGTGCTAGA 57.372 33.333 0.00 0.00 38.76 2.43
2242 2298 8.364142 GGATGTATCTAGACTCATTTTAGTGCT 58.636 37.037 11.25 0.00 0.00 4.40
2243 2299 7.327275 CGGATGTATCTAGACTCATTTTAGTGC 59.673 40.741 11.25 0.00 0.00 4.40
2244 2300 8.353684 ACGGATGTATCTAGACTCATTTTAGTG 58.646 37.037 11.25 3.85 0.00 2.74
2245 2301 8.466617 ACGGATGTATCTAGACTCATTTTAGT 57.533 34.615 11.25 7.70 0.00 2.24
2261 2317 7.776618 TGGATTTGTCTAGATACGGATGTAT 57.223 36.000 0.00 0.00 43.97 2.29
2262 2318 7.504574 TCTTGGATTTGTCTAGATACGGATGTA 59.495 37.037 0.00 0.00 34.45 2.29
2263 2319 6.323996 TCTTGGATTTGTCTAGATACGGATGT 59.676 38.462 0.00 0.00 0.00 3.06
2264 2320 6.642950 GTCTTGGATTTGTCTAGATACGGATG 59.357 42.308 0.00 0.00 0.00 3.51
2265 2321 6.323996 TGTCTTGGATTTGTCTAGATACGGAT 59.676 38.462 0.00 0.00 0.00 4.18
2266 2322 5.655090 TGTCTTGGATTTGTCTAGATACGGA 59.345 40.000 0.00 0.00 0.00 4.69
2267 2323 5.902681 TGTCTTGGATTTGTCTAGATACGG 58.097 41.667 0.00 0.00 0.00 4.02
2268 2324 7.036220 ACTTGTCTTGGATTTGTCTAGATACG 58.964 38.462 0.00 0.00 0.00 3.06
2269 2325 9.871238 TTACTTGTCTTGGATTTGTCTAGATAC 57.129 33.333 0.00 0.00 0.00 2.24
2271 2327 9.965902 AATTACTTGTCTTGGATTTGTCTAGAT 57.034 29.630 0.00 0.00 0.00 1.98
2272 2328 9.436957 GAATTACTTGTCTTGGATTTGTCTAGA 57.563 33.333 0.00 0.00 0.00 2.43
2273 2329 8.383619 CGAATTACTTGTCTTGGATTTGTCTAG 58.616 37.037 0.00 0.00 0.00 2.43
2274 2330 7.333423 CCGAATTACTTGTCTTGGATTTGTCTA 59.667 37.037 0.00 0.00 0.00 2.59
2275 2331 6.149474 CCGAATTACTTGTCTTGGATTTGTCT 59.851 38.462 0.00 0.00 0.00 3.41
2276 2332 6.148811 TCCGAATTACTTGTCTTGGATTTGTC 59.851 38.462 0.00 0.00 0.00 3.18
2277 2333 6.001460 TCCGAATTACTTGTCTTGGATTTGT 58.999 36.000 0.00 0.00 0.00 2.83
2278 2334 6.494893 TCCGAATTACTTGTCTTGGATTTG 57.505 37.500 0.00 0.00 0.00 2.32
2279 2335 6.348213 CGTTCCGAATTACTTGTCTTGGATTT 60.348 38.462 0.00 0.00 0.00 2.17
2280 2336 5.121768 CGTTCCGAATTACTTGTCTTGGATT 59.878 40.000 0.00 0.00 0.00 3.01
2281 2337 4.630069 CGTTCCGAATTACTTGTCTTGGAT 59.370 41.667 0.00 0.00 0.00 3.41
2282 2338 3.991773 CGTTCCGAATTACTTGTCTTGGA 59.008 43.478 0.00 0.00 0.00 3.53
2283 2339 3.124636 CCGTTCCGAATTACTTGTCTTGG 59.875 47.826 0.00 0.00 0.00 3.61
2284 2340 3.991773 TCCGTTCCGAATTACTTGTCTTG 59.008 43.478 0.00 0.00 0.00 3.02
2285 2341 4.243270 CTCCGTTCCGAATTACTTGTCTT 58.757 43.478 0.00 0.00 0.00 3.01
2286 2342 3.368116 CCTCCGTTCCGAATTACTTGTCT 60.368 47.826 0.00 0.00 0.00 3.41
2287 2343 2.928116 CCTCCGTTCCGAATTACTTGTC 59.072 50.000 0.00 0.00 0.00 3.18
2288 2344 2.564062 TCCTCCGTTCCGAATTACTTGT 59.436 45.455 0.00 0.00 0.00 3.16
2289 2345 3.241067 TCCTCCGTTCCGAATTACTTG 57.759 47.619 0.00 0.00 0.00 3.16
2290 2346 3.260128 ACTTCCTCCGTTCCGAATTACTT 59.740 43.478 0.00 0.00 0.00 2.24
2291 2347 2.830321 ACTTCCTCCGTTCCGAATTACT 59.170 45.455 0.00 0.00 0.00 2.24
2292 2348 3.242549 ACTTCCTCCGTTCCGAATTAC 57.757 47.619 0.00 0.00 0.00 1.89
2293 2349 3.181497 CGTACTTCCTCCGTTCCGAATTA 60.181 47.826 0.00 0.00 0.00 1.40
2294 2350 2.416431 CGTACTTCCTCCGTTCCGAATT 60.416 50.000 0.00 0.00 0.00 2.17
2295 2351 1.133790 CGTACTTCCTCCGTTCCGAAT 59.866 52.381 0.00 0.00 0.00 3.34
2296 2352 0.523072 CGTACTTCCTCCGTTCCGAA 59.477 55.000 0.00 0.00 0.00 4.30
2297 2353 0.606401 ACGTACTTCCTCCGTTCCGA 60.606 55.000 0.00 0.00 0.00 4.55
2298 2354 0.455633 CACGTACTTCCTCCGTTCCG 60.456 60.000 0.00 0.00 31.46 4.30
2299 2355 0.735287 GCACGTACTTCCTCCGTTCC 60.735 60.000 0.00 0.00 31.46 3.62
2300 2356 0.038892 TGCACGTACTTCCTCCGTTC 60.039 55.000 0.00 0.00 31.46 3.95
2301 2357 0.606604 ATGCACGTACTTCCTCCGTT 59.393 50.000 0.00 0.00 31.46 4.44
2302 2358 0.108804 CATGCACGTACTTCCTCCGT 60.109 55.000 0.00 0.00 34.71 4.69
2303 2359 0.806102 CCATGCACGTACTTCCTCCG 60.806 60.000 0.00 0.00 0.00 4.63
2304 2360 0.249398 ACCATGCACGTACTTCCTCC 59.751 55.000 0.00 0.00 0.00 4.30
2305 2361 1.337823 ACACCATGCACGTACTTCCTC 60.338 52.381 0.00 0.00 0.00 3.71
2306 2362 0.685097 ACACCATGCACGTACTTCCT 59.315 50.000 0.00 0.00 0.00 3.36
2307 2363 1.519408 AACACCATGCACGTACTTCC 58.481 50.000 0.00 0.00 0.00 3.46
2308 2364 4.939509 ATTAACACCATGCACGTACTTC 57.060 40.909 0.00 0.00 0.00 3.01
2309 2365 6.821665 AGATAATTAACACCATGCACGTACTT 59.178 34.615 0.00 0.00 0.00 2.24
2321 2377 8.561738 TCAAGAAACTCCAGATAATTAACACC 57.438 34.615 0.00 0.00 0.00 4.16
2379 2437 5.721480 CCCTGGTTAATGAAAGATTTTCCCT 59.279 40.000 0.00 0.00 0.00 4.20
2380 2438 5.104941 CCCCTGGTTAATGAAAGATTTTCCC 60.105 44.000 0.00 0.00 0.00 3.97
2562 2627 4.888326 ATTGTCTCTCTCACTTTGCTCT 57.112 40.909 0.00 0.00 0.00 4.09
2563 2628 6.815641 TCATTATTGTCTCTCTCACTTTGCTC 59.184 38.462 0.00 0.00 0.00 4.26
2605 2670 4.314440 TGGTGCCGTGACTGGAGC 62.314 66.667 0.00 0.00 0.00 4.70
2607 2672 4.293648 CGTGGTGCCGTGACTGGA 62.294 66.667 0.00 0.00 0.00 3.86
2762 2827 2.155732 CGCACGCTAGCTATAATTGGTG 59.844 50.000 13.93 11.50 0.00 4.17
2804 2869 7.065894 CGATCACAAGCTGTTAATACAATAGC 58.934 38.462 0.00 0.00 32.92 2.97
2896 2961 1.004560 CCGCTTCAGCTCCTTCACA 60.005 57.895 0.00 0.00 39.32 3.58
2920 2985 1.278172 CCATCATCGTCATCGCCGAC 61.278 60.000 0.00 0.00 37.12 4.79
3235 3300 2.713770 GCGCACTCCTCGTCGATA 59.286 61.111 0.30 0.00 0.00 2.92
3428 3499 0.798776 CGATCTTGGATAATGCCGGC 59.201 55.000 22.73 22.73 0.00 6.13
3663 3734 0.251634 CTGAAAGAGCTCTCACCCCC 59.748 60.000 18.55 3.59 34.07 5.40
3664 3735 0.251634 CCTGAAAGAGCTCTCACCCC 59.748 60.000 18.55 5.35 34.07 4.95
3665 3736 0.980423 ACCTGAAAGAGCTCTCACCC 59.020 55.000 18.55 7.15 34.07 4.61
3666 3737 1.620819 TGACCTGAAAGAGCTCTCACC 59.379 52.381 18.55 9.70 34.07 4.02
3667 3738 2.930455 GCTGACCTGAAAGAGCTCTCAC 60.930 54.545 18.55 14.32 34.07 3.51
3668 3739 1.274728 GCTGACCTGAAAGAGCTCTCA 59.725 52.381 18.55 11.15 34.07 3.27
3669 3740 1.405391 GGCTGACCTGAAAGAGCTCTC 60.405 57.143 18.55 6.34 32.42 3.20
3670 3741 0.612744 GGCTGACCTGAAAGAGCTCT 59.387 55.000 11.45 11.45 32.42 4.09
3671 3742 3.151461 GGCTGACCTGAAAGAGCTC 57.849 57.895 5.27 5.27 32.42 4.09
3708 4092 2.229792 AGCACATTTGTACACCCACAG 58.770 47.619 0.00 0.00 0.00 3.66
3795 4179 1.520174 CGTGATCAGCTAGATGCAACG 59.480 52.381 2.24 9.08 45.94 4.10
3797 4181 2.931969 CAACGTGATCAGCTAGATGCAA 59.068 45.455 2.24 0.00 45.94 4.08
3798 4182 2.543641 CAACGTGATCAGCTAGATGCA 58.456 47.619 2.24 0.00 45.94 3.96
3800 4184 2.543641 TGCAACGTGATCAGCTAGATG 58.456 47.619 0.24 0.24 37.00 2.90
3819 4232 4.400845 CAACGCTTCTGAATCTGTGAATG 58.599 43.478 0.00 0.00 0.00 2.67
3836 4249 3.487942 AGATTTTAACCAAAACGCAACGC 59.512 39.130 0.00 0.00 36.49 4.84
3885 4298 9.477484 ACACAGTAGTTCAAAGTGACTTAATAG 57.523 33.333 0.00 0.00 34.47 1.73
3935 4352 0.249489 GCACAGGACTCAACAGACGT 60.249 55.000 0.00 0.00 0.00 4.34
3936 4353 0.249447 TGCACAGGACTCAACAGACG 60.249 55.000 0.00 0.00 0.00 4.18
3937 4354 1.869767 CTTGCACAGGACTCAACAGAC 59.130 52.381 0.00 0.00 0.00 3.51
3940 4357 2.418368 AACTTGCACAGGACTCAACA 57.582 45.000 0.00 0.00 0.00 3.33
3955 4372 5.497474 ACACAGACACAAGAACCTTAACTT 58.503 37.500 0.00 0.00 0.00 2.66
3964 4382 3.270027 CAGGTGAACACAGACACAAGAA 58.730 45.455 7.25 0.00 38.57 2.52
3966 4384 2.632377 ACAGGTGAACACAGACACAAG 58.368 47.619 7.25 0.00 38.57 3.16
3973 4391 2.368875 AGGGTTCTACAGGTGAACACAG 59.631 50.000 10.79 1.84 46.81 3.66
3988 4406 5.339008 AAAGGAAGAACACAAAAGGGTTC 57.661 39.130 2.51 2.51 42.82 3.62
4015 4433 7.438459 GCTATAACCAGTTCGTTACATGATCTT 59.562 37.037 0.00 0.00 31.25 2.40
4018 4436 6.817184 AGCTATAACCAGTTCGTTACATGAT 58.183 36.000 0.00 0.00 31.25 2.45
4019 4437 6.216801 AGCTATAACCAGTTCGTTACATGA 57.783 37.500 0.00 0.00 31.25 3.07
4020 4438 7.201145 ACTAGCTATAACCAGTTCGTTACATG 58.799 38.462 0.00 0.00 31.25 3.21
4021 4439 7.344095 ACTAGCTATAACCAGTTCGTTACAT 57.656 36.000 0.00 0.00 31.25 2.29
4022 4440 6.764308 ACTAGCTATAACCAGTTCGTTACA 57.236 37.500 0.00 0.00 31.25 2.41
4023 4441 7.253422 TCAACTAGCTATAACCAGTTCGTTAC 58.747 38.462 0.00 0.00 31.25 2.50
4030 4896 4.030913 TGCCTCAACTAGCTATAACCAGT 58.969 43.478 0.00 0.00 0.00 4.00
4071 4937 6.893583 ACAGACTTGTGGAATAAGAGCATAT 58.106 36.000 0.00 0.00 37.20 1.78
4087 4953 4.442706 ACAAAGGTAGACACACAGACTTG 58.557 43.478 0.00 0.00 0.00 3.16
4106 4972 5.368230 TGGCCAAGGAGACATATGTATACAA 59.632 40.000 14.98 0.00 0.00 2.41
4135 5004 8.731605 CAGATATAGGTTAGACGCAAAGATCTA 58.268 37.037 0.00 0.00 0.00 1.98
4172 5041 7.815068 CACGAGAGGAGAAAGAAAGATAAAGAA 59.185 37.037 0.00 0.00 0.00 2.52
4174 5043 7.316640 TCACGAGAGGAGAAAGAAAGATAAAG 58.683 38.462 0.00 0.00 0.00 1.85
4197 5066 1.079127 GCTTTGCCTAGTCGCCTCA 60.079 57.895 0.00 0.00 0.00 3.86
4198 5067 1.815840 GGCTTTGCCTAGTCGCCTC 60.816 63.158 0.73 0.00 46.69 4.70
4212 5081 0.618968 AGATCAGGGGACGAAGGCTT 60.619 55.000 0.00 0.00 0.00 4.35
4214 5083 0.179070 GAAGATCAGGGGACGAAGGC 60.179 60.000 0.00 0.00 0.00 4.35
4236 5106 4.880537 CGAATCCAGCGCTCGCCT 62.881 66.667 7.13 0.00 43.17 5.52
4239 5109 1.941734 GAGACGAATCCAGCGCTCG 60.942 63.158 7.13 11.24 38.53 5.03
4245 5115 0.749649 CAGAGGGGAGACGAATCCAG 59.250 60.000 11.76 0.00 41.52 3.86
4253 5123 2.716017 CGGCAGTCAGAGGGGAGAC 61.716 68.421 0.00 0.00 35.02 3.36
4278 5148 4.856801 CTTCCCCATCACCGGCCG 62.857 72.222 21.04 21.04 0.00 6.13
4279 5149 4.506255 CCTTCCCCATCACCGGCC 62.506 72.222 0.00 0.00 0.00 6.13
4283 5153 0.186143 GGATTCCCTTCCCCATCACC 59.814 60.000 0.00 0.00 0.00 4.02
4302 5172 0.034059 AACCAGAGTCAAGGCACGAG 59.966 55.000 0.00 0.00 0.00 4.18
4303 5173 1.272490 CTAACCAGAGTCAAGGCACGA 59.728 52.381 0.00 0.00 0.00 4.35
4313 5183 9.939424 ACTAAAATCCTATCTACTAACCAGAGT 57.061 33.333 0.00 0.00 0.00 3.24
4317 5187 8.548880 AGCACTAAAATCCTATCTACTAACCA 57.451 34.615 0.00 0.00 0.00 3.67
4319 5189 7.326547 GCGAGCACTAAAATCCTATCTACTAAC 59.673 40.741 0.00 0.00 0.00 2.34
4320 5190 7.013942 TGCGAGCACTAAAATCCTATCTACTAA 59.986 37.037 0.00 0.00 0.00 2.24
4330 5200 1.017387 CCCTGCGAGCACTAAAATCC 58.983 55.000 0.00 0.00 0.00 3.01
4334 5204 1.003839 CACCCCTGCGAGCACTAAA 60.004 57.895 0.00 0.00 0.00 1.85
4335 5205 1.911269 TCACCCCTGCGAGCACTAA 60.911 57.895 0.00 0.00 0.00 2.24
4336 5206 2.283604 TCACCCCTGCGAGCACTA 60.284 61.111 0.00 0.00 0.00 2.74
4337 5207 4.008933 GTCACCCCTGCGAGCACT 62.009 66.667 0.00 0.00 0.00 4.40
4338 5208 4.314440 TGTCACCCCTGCGAGCAC 62.314 66.667 0.00 0.00 0.00 4.40
4340 5210 3.537206 AAGTGTCACCCCTGCGAGC 62.537 63.158 0.00 0.00 0.00 5.03
4349 5224 0.673644 CCATCCGTCCAAGTGTCACC 60.674 60.000 0.00 0.00 0.00 4.02
4351 5226 1.003839 GCCATCCGTCCAAGTGTCA 60.004 57.895 0.00 0.00 0.00 3.58
4369 5244 1.475441 GATTGACTCGAGAAGCGGCG 61.475 60.000 21.68 0.51 41.33 6.46
4391 5269 1.266178 TGACGAAGATCAGAGCCCAA 58.734 50.000 0.00 0.00 0.00 4.12
4395 5273 2.596419 CGAACTTGACGAAGATCAGAGC 59.404 50.000 0.00 0.00 31.92 4.09
4396 5274 3.827625 ACGAACTTGACGAAGATCAGAG 58.172 45.455 0.00 0.00 31.92 3.35


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.