Multiple sequence alignment - TraesCS5A01G228900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G228900 chr5A 100.000 3804 0 0 1 3804 444852481 444848678 0.000000e+00 7025.0
1 TraesCS5A01G228900 chr5A 91.513 271 23 0 1 271 591310806 591310536 1.290000e-99 374.0
2 TraesCS5A01G228900 chr5D 92.633 2674 104 42 941 3541 346876275 346878928 0.000000e+00 3760.0
3 TraesCS5A01G228900 chr5D 87.179 390 39 7 563 945 346875862 346876247 2.100000e-117 433.0
4 TraesCS5A01G228900 chr5D 87.591 274 19 3 286 544 346875034 346875307 1.720000e-78 303.0
5 TraesCS5A01G228900 chr5D 93.750 112 6 1 3694 3804 305752139 305752028 2.350000e-37 167.0
6 TraesCS5A01G228900 chr5D 92.593 108 7 1 3698 3804 220670495 220670388 1.830000e-33 154.0
7 TraesCS5A01G228900 chr5D 77.953 127 21 6 3388 3510 377532904 377532781 5.270000e-09 73.1
8 TraesCS5A01G228900 chr5B 90.457 2536 134 54 623 3085 404145771 404143271 0.000000e+00 3243.0
9 TraesCS5A01G228900 chr5B 86.928 459 37 12 3092 3531 404094033 404093579 9.490000e-136 494.0
10 TraesCS5A01G228900 chr5B 91.985 262 21 0 1 262 441096500 441096761 6.000000e-98 368.0
11 TraesCS5A01G228900 chr5B 90.672 268 22 2 4 271 697247241 697246977 1.680000e-93 353.0
12 TraesCS5A01G228900 chr6D 92.424 264 20 0 1 264 447512269 447512532 9.970000e-101 377.0
13 TraesCS5A01G228900 chr6D 93.519 108 6 1 3698 3804 352858204 352858311 3.930000e-35 159.0
14 TraesCS5A01G228900 chr2D 92.453 265 19 1 1 264 602685585 602685321 9.970000e-101 377.0
15 TraesCS5A01G228900 chr2D 94.340 159 8 1 3541 3698 456228044 456228202 3.800000e-60 243.0
16 TraesCS5A01G228900 chr2D 92.771 166 8 4 3534 3698 476964601 476964439 1.770000e-58 237.0
17 TraesCS5A01G228900 chr2D 92.771 166 8 4 3534 3698 476967444 476967282 1.770000e-58 237.0
18 TraesCS5A01G228900 chr2D 89.815 108 10 1 3698 3804 439981546 439981653 1.840000e-28 137.0
19 TraesCS5A01G228900 chr1B 90.809 272 25 0 1 272 680779977 680780248 7.770000e-97 364.0
20 TraesCS5A01G228900 chr1B 90.672 268 25 0 4 271 394065979 394065712 1.300000e-94 357.0
21 TraesCS5A01G228900 chr7B 91.321 265 23 0 1 265 56479381 56479645 2.790000e-96 363.0
22 TraesCS5A01G228900 chr1A 90.602 266 25 0 6 271 564124727 564124462 1.680000e-93 353.0
23 TraesCS5A01G228900 chr1A 94.444 108 5 1 3698 3804 143817139 143817246 8.450000e-37 165.0
24 TraesCS5A01G228900 chr3D 86.567 268 29 6 3540 3804 454156831 454156568 4.810000e-74 289.0
25 TraesCS5A01G228900 chr3D 94.340 159 8 1 3541 3698 409020189 409020031 3.800000e-60 243.0
26 TraesCS5A01G228900 chr3D 82.456 171 30 0 1290 1460 609215877 609215707 2.370000e-32 150.0
27 TraesCS5A01G228900 chr3D 95.385 65 3 0 1151 1215 274337213 274337277 1.870000e-18 104.0
28 TraesCS5A01G228900 chr7D 95.625 160 6 1 3540 3698 136129533 136129374 4.880000e-64 255.0
29 TraesCS5A01G228900 chr7D 93.750 160 9 1 3540 3698 587925385 587925226 4.910000e-59 239.0
30 TraesCS5A01G228900 chr7D 94.118 102 5 1 3704 3804 223841865 223841764 1.830000e-33 154.0
31 TraesCS5A01G228900 chr4D 95.031 161 7 1 3539 3698 28364742 28364902 6.310000e-63 252.0
32 TraesCS5A01G228900 chr1D 93.750 160 9 1 3540 3698 28576680 28576839 4.910000e-59 239.0
33 TraesCS5A01G228900 chr4B 91.275 149 13 0 3392 3540 611405779 611405927 1.790000e-48 204.0
34 TraesCS5A01G228900 chr3A 82.456 171 30 0 1290 1460 742768873 742768703 2.370000e-32 150.0
35 TraesCS5A01G228900 chr3A 89.815 108 10 1 3698 3804 46044116 46044009 1.840000e-28 137.0
36 TraesCS5A01G228900 chr3A 96.825 63 2 0 1153 1215 359082387 359082325 5.200000e-19 106.0
37 TraesCS5A01G228900 chr3A 93.548 62 4 0 1154 1215 742616982 742616921 4.050000e-15 93.5
38 TraesCS5A01G228900 chr4A 89.908 109 8 2 3698 3804 608148489 608148382 1.840000e-28 137.0
39 TraesCS5A01G228900 chr3B 89.011 91 8 2 1126 1215 819901652 819901563 1.120000e-20 111.0
40 TraesCS5A01G228900 chr3B 96.923 65 2 0 1151 1215 359228452 359228388 4.020000e-20 110.0
41 TraesCS5A01G228900 chr6B 100.000 30 0 0 3392 3421 116427801 116427772 5.310000e-04 56.5


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G228900 chr5A 444848678 444852481 3803 True 7025.000000 7025 100.000000 1 3804 1 chr5A.!!$R1 3803
1 TraesCS5A01G228900 chr5D 346875034 346878928 3894 False 1498.666667 3760 89.134333 286 3541 3 chr5D.!!$F1 3255
2 TraesCS5A01G228900 chr5B 404143271 404145771 2500 True 3243.000000 3243 90.457000 623 3085 1 chr5B.!!$R2 2462
3 TraesCS5A01G228900 chr2D 476964439 476967444 3005 True 237.000000 237 92.771000 3534 3698 2 chr2D.!!$R2 164

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
77 78 0.033796 AGATACCGGTGGTTCCTCGA 60.034 55.0 19.93 0.0 37.09 4.04 F
112 113 0.035739 GGTTTGAGACCGCCAACCTA 59.964 55.0 0.68 0.0 39.00 3.08 F
222 223 0.036765 TAAATTGTCGCCGCTCCTGT 60.037 50.0 0.00 0.0 0.00 4.00 F
299 300 0.179161 CGTGGAGGCTACTTGAGACG 60.179 60.0 0.00 0.0 38.79 4.18 F
2181 2832 0.108992 TCGTCTACATCGGCACCAAC 60.109 55.0 0.00 0.0 0.00 3.77 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1818 2469 0.684805 AGGCCTCCAGGTAGAAGACG 60.685 60.000 0.00 0.00 37.57 4.18 R
2052 2703 1.138883 CCGCTCGTACTGCAGCTTA 59.861 57.895 15.27 0.00 33.09 3.09 R
2164 2815 0.743345 GGGTTGGTGCCGATGTAGAC 60.743 60.000 0.00 0.00 0.00 2.59 R
2242 2899 2.047179 GTCCCGCTGGTTCACTCC 60.047 66.667 0.00 0.00 0.00 3.85 R
3424 4109 0.037139 TCATGCAATGCTTTGTGGGC 60.037 50.000 6.82 0.45 46.21 5.36 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.736447 CTTCGGCCTCTTTATTAGATCAAAT 57.264 36.000 0.00 0.00 30.92 2.32
25 26 8.833231 CTTCGGCCTCTTTATTAGATCAAATA 57.167 34.615 0.00 0.00 30.92 1.40
26 27 9.273016 CTTCGGCCTCTTTATTAGATCAAATAA 57.727 33.333 0.00 0.00 30.92 1.40
27 28 8.603242 TCGGCCTCTTTATTAGATCAAATAAC 57.397 34.615 0.00 0.00 32.44 1.89
28 29 7.660208 TCGGCCTCTTTATTAGATCAAATAACC 59.340 37.037 0.00 0.00 32.44 2.85
29 30 7.360101 CGGCCTCTTTATTAGATCAAATAACCG 60.360 40.741 0.00 0.00 33.49 4.44
30 31 7.444487 GGCCTCTTTATTAGATCAAATAACCGT 59.556 37.037 0.00 0.00 32.44 4.83
31 32 8.837389 GCCTCTTTATTAGATCAAATAACCGTT 58.163 33.333 0.00 0.00 32.44 4.44
40 41 7.730364 AGATCAAATAACCGTTACATCATCC 57.270 36.000 0.00 0.00 0.00 3.51
41 42 7.279615 AGATCAAATAACCGTTACATCATCCA 58.720 34.615 0.00 0.00 0.00 3.41
42 43 6.671614 TCAAATAACCGTTACATCATCCAC 57.328 37.500 0.00 0.00 0.00 4.02
43 44 6.411376 TCAAATAACCGTTACATCATCCACT 58.589 36.000 0.00 0.00 0.00 4.00
44 45 7.557724 TCAAATAACCGTTACATCATCCACTA 58.442 34.615 0.00 0.00 0.00 2.74
45 46 7.709182 TCAAATAACCGTTACATCATCCACTAG 59.291 37.037 0.00 0.00 0.00 2.57
46 47 3.454371 ACCGTTACATCATCCACTAGC 57.546 47.619 0.00 0.00 0.00 3.42
47 48 2.102588 ACCGTTACATCATCCACTAGCC 59.897 50.000 0.00 0.00 0.00 3.93
48 49 2.102420 CCGTTACATCATCCACTAGCCA 59.898 50.000 0.00 0.00 0.00 4.75
49 50 3.123804 CGTTACATCATCCACTAGCCAC 58.876 50.000 0.00 0.00 0.00 5.01
50 51 3.467803 GTTACATCATCCACTAGCCACC 58.532 50.000 0.00 0.00 0.00 4.61
51 52 1.885049 ACATCATCCACTAGCCACCT 58.115 50.000 0.00 0.00 0.00 4.00
52 53 2.200081 ACATCATCCACTAGCCACCTT 58.800 47.619 0.00 0.00 0.00 3.50
53 54 3.384168 ACATCATCCACTAGCCACCTTA 58.616 45.455 0.00 0.00 0.00 2.69
54 55 3.134804 ACATCATCCACTAGCCACCTTAC 59.865 47.826 0.00 0.00 0.00 2.34
55 56 2.827755 TCATCCACTAGCCACCTTACA 58.172 47.619 0.00 0.00 0.00 2.41
56 57 3.178046 TCATCCACTAGCCACCTTACAA 58.822 45.455 0.00 0.00 0.00 2.41
57 58 3.780294 TCATCCACTAGCCACCTTACAAT 59.220 43.478 0.00 0.00 0.00 2.71
58 59 4.966168 TCATCCACTAGCCACCTTACAATA 59.034 41.667 0.00 0.00 0.00 1.90
59 60 5.070446 TCATCCACTAGCCACCTTACAATAG 59.930 44.000 0.00 0.00 0.00 1.73
60 61 4.616553 TCCACTAGCCACCTTACAATAGA 58.383 43.478 0.00 0.00 0.00 1.98
61 62 5.216622 TCCACTAGCCACCTTACAATAGAT 58.783 41.667 0.00 0.00 0.00 1.98
62 63 6.378745 TCCACTAGCCACCTTACAATAGATA 58.621 40.000 0.00 0.00 0.00 1.98
63 64 6.267014 TCCACTAGCCACCTTACAATAGATAC 59.733 42.308 0.00 0.00 0.00 2.24
64 65 6.456501 CACTAGCCACCTTACAATAGATACC 58.543 44.000 0.00 0.00 0.00 2.73
65 66 4.602340 AGCCACCTTACAATAGATACCG 57.398 45.455 0.00 0.00 0.00 4.02
66 67 3.323979 AGCCACCTTACAATAGATACCGG 59.676 47.826 0.00 0.00 0.00 5.28
67 68 3.070590 GCCACCTTACAATAGATACCGGT 59.929 47.826 13.98 13.98 0.00 5.28
68 69 4.628074 CCACCTTACAATAGATACCGGTG 58.372 47.826 19.93 0.00 40.14 4.94
69 70 4.628074 CACCTTACAATAGATACCGGTGG 58.372 47.826 19.93 7.56 37.58 4.61
70 71 4.100498 CACCTTACAATAGATACCGGTGGT 59.900 45.833 19.93 8.30 37.58 4.16
71 72 4.718276 ACCTTACAATAGATACCGGTGGTT 59.282 41.667 19.93 4.43 37.09 3.67
72 73 5.163374 ACCTTACAATAGATACCGGTGGTTC 60.163 44.000 19.93 11.60 37.09 3.62
73 74 3.832615 ACAATAGATACCGGTGGTTCC 57.167 47.619 19.93 1.16 37.09 3.62
74 75 3.381335 ACAATAGATACCGGTGGTTCCT 58.619 45.455 19.93 9.15 37.09 3.36
75 76 3.387050 ACAATAGATACCGGTGGTTCCTC 59.613 47.826 19.93 4.25 37.09 3.71
76 77 1.683943 TAGATACCGGTGGTTCCTCG 58.316 55.000 19.93 0.00 37.09 4.63
77 78 0.033796 AGATACCGGTGGTTCCTCGA 60.034 55.000 19.93 0.00 37.09 4.04
78 79 0.101939 GATACCGGTGGTTCCTCGAC 59.898 60.000 19.93 0.00 37.09 4.20
79 80 1.325476 ATACCGGTGGTTCCTCGACC 61.325 60.000 19.93 0.00 40.77 4.79
80 81 4.078516 CCGGTGGTTCCTCGACCC 62.079 72.222 0.00 0.00 41.04 4.46
81 82 3.307906 CGGTGGTTCCTCGACCCA 61.308 66.667 0.00 0.00 41.04 4.51
82 83 2.346365 GGTGGTTCCTCGACCCAC 59.654 66.667 9.30 9.30 46.35 4.61
83 84 3.144285 GTGGTTCCTCGACCCACA 58.856 61.111 11.82 0.00 46.33 4.17
84 85 1.448497 GTGGTTCCTCGACCCACAA 59.552 57.895 11.82 0.00 46.33 3.33
85 86 0.883370 GTGGTTCCTCGACCCACAAC 60.883 60.000 11.82 0.00 46.33 3.32
86 87 1.666872 GGTTCCTCGACCCACAACG 60.667 63.158 0.00 0.00 33.41 4.10
87 88 1.364901 GTTCCTCGACCCACAACGA 59.635 57.895 0.00 0.00 37.03 3.85
97 98 4.571243 CACAACGAGGGTGGGTTT 57.429 55.556 0.00 0.00 32.65 3.27
98 99 2.029743 CACAACGAGGGTGGGTTTG 58.970 57.895 0.00 0.00 32.65 2.93
99 100 0.464735 CACAACGAGGGTGGGTTTGA 60.465 55.000 0.00 0.00 32.65 2.69
100 101 0.179029 ACAACGAGGGTGGGTTTGAG 60.179 55.000 0.00 0.00 0.00 3.02
101 102 0.107831 CAACGAGGGTGGGTTTGAGA 59.892 55.000 0.00 0.00 0.00 3.27
102 103 0.108019 AACGAGGGTGGGTTTGAGAC 59.892 55.000 0.00 0.00 0.00 3.36
110 111 3.351450 GGTTTGAGACCGCCAACC 58.649 61.111 0.00 0.00 39.00 3.77
111 112 1.228154 GGTTTGAGACCGCCAACCT 60.228 57.895 0.68 0.00 39.00 3.50
112 113 0.035739 GGTTTGAGACCGCCAACCTA 59.964 55.000 0.68 0.00 39.00 3.08
113 114 1.439679 GTTTGAGACCGCCAACCTAG 58.560 55.000 0.00 0.00 0.00 3.02
114 115 0.321298 TTTGAGACCGCCAACCTAGC 60.321 55.000 0.00 0.00 0.00 3.42
115 116 1.192146 TTGAGACCGCCAACCTAGCT 61.192 55.000 0.00 0.00 0.00 3.32
116 117 0.323999 TGAGACCGCCAACCTAGCTA 60.324 55.000 0.00 0.00 0.00 3.32
117 118 0.386113 GAGACCGCCAACCTAGCTAG 59.614 60.000 14.20 14.20 0.00 3.42
118 119 1.227292 GACCGCCAACCTAGCTAGC 60.227 63.158 15.74 6.62 0.00 3.42
119 120 1.677637 GACCGCCAACCTAGCTAGCT 61.678 60.000 23.12 23.12 0.00 3.32
120 121 1.068250 CCGCCAACCTAGCTAGCTC 59.932 63.158 23.26 3.64 0.00 4.09
121 122 1.676678 CCGCCAACCTAGCTAGCTCA 61.677 60.000 23.26 7.11 0.00 4.26
122 123 0.390860 CGCCAACCTAGCTAGCTCAT 59.609 55.000 23.26 4.85 0.00 2.90
123 124 1.871408 CGCCAACCTAGCTAGCTCATG 60.871 57.143 23.26 15.18 0.00 3.07
124 125 1.414181 GCCAACCTAGCTAGCTCATGA 59.586 52.381 23.26 1.96 0.00 3.07
125 126 2.547642 GCCAACCTAGCTAGCTCATGAG 60.548 54.545 23.26 18.84 0.00 2.90
126 127 2.961741 CCAACCTAGCTAGCTCATGAGA 59.038 50.000 27.04 5.37 0.00 3.27
127 128 3.005684 CCAACCTAGCTAGCTCATGAGAG 59.994 52.174 27.04 16.20 44.96 3.20
128 129 3.874383 ACCTAGCTAGCTCATGAGAGA 57.126 47.619 27.04 11.55 44.98 3.10
129 130 3.486383 ACCTAGCTAGCTCATGAGAGAC 58.514 50.000 27.04 11.60 44.98 3.36
130 131 3.117701 ACCTAGCTAGCTCATGAGAGACA 60.118 47.826 27.04 6.38 44.98 3.41
131 132 3.253188 CCTAGCTAGCTCATGAGAGACAC 59.747 52.174 27.04 8.03 44.98 3.67
132 133 2.732763 AGCTAGCTCATGAGAGACACA 58.267 47.619 27.04 2.91 44.98 3.72
133 134 2.689471 AGCTAGCTCATGAGAGACACAG 59.311 50.000 27.04 12.72 44.98 3.66
134 135 2.426738 GCTAGCTCATGAGAGACACAGT 59.573 50.000 27.04 2.26 44.98 3.55
135 136 3.119173 GCTAGCTCATGAGAGACACAGTT 60.119 47.826 27.04 0.00 44.98 3.16
136 137 4.620332 GCTAGCTCATGAGAGACACAGTTT 60.620 45.833 27.04 0.88 44.98 2.66
137 138 3.661944 AGCTCATGAGAGACACAGTTTG 58.338 45.455 27.04 0.00 44.98 2.93
138 139 2.159234 GCTCATGAGAGACACAGTTTGC 59.841 50.000 27.04 2.82 44.98 3.68
139 140 2.740981 CTCATGAGAGACACAGTTTGCC 59.259 50.000 18.34 0.00 44.98 4.52
140 141 2.369860 TCATGAGAGACACAGTTTGCCT 59.630 45.455 0.00 0.00 0.00 4.75
141 142 2.533266 TGAGAGACACAGTTTGCCTC 57.467 50.000 0.00 0.00 0.00 4.70
142 143 1.070758 TGAGAGACACAGTTTGCCTCC 59.929 52.381 0.00 0.00 0.00 4.30
143 144 1.346068 GAGAGACACAGTTTGCCTCCT 59.654 52.381 0.00 0.00 0.00 3.69
144 145 1.771255 AGAGACACAGTTTGCCTCCTT 59.229 47.619 0.00 0.00 0.00 3.36
145 146 2.972713 AGAGACACAGTTTGCCTCCTTA 59.027 45.455 0.00 0.00 0.00 2.69
146 147 3.007398 AGAGACACAGTTTGCCTCCTTAG 59.993 47.826 0.00 0.00 0.00 2.18
147 148 2.039084 AGACACAGTTTGCCTCCTTAGG 59.961 50.000 0.00 0.00 46.76 2.69
148 149 1.073923 ACACAGTTTGCCTCCTTAGGG 59.926 52.381 0.00 0.00 43.87 3.53
157 158 2.283145 CCTCCTTAGGGCAATGGATG 57.717 55.000 0.00 0.00 39.48 3.51
158 159 1.776667 CCTCCTTAGGGCAATGGATGA 59.223 52.381 0.00 0.00 39.48 2.92
159 160 2.175499 CCTCCTTAGGGCAATGGATGAA 59.825 50.000 0.00 0.00 39.48 2.57
160 161 3.373001 CCTCCTTAGGGCAATGGATGAAA 60.373 47.826 0.00 0.00 39.48 2.69
161 162 3.887716 CTCCTTAGGGCAATGGATGAAAG 59.112 47.826 0.00 0.00 0.00 2.62
162 163 3.527253 TCCTTAGGGCAATGGATGAAAGA 59.473 43.478 0.00 0.00 0.00 2.52
163 164 3.633986 CCTTAGGGCAATGGATGAAAGAC 59.366 47.826 0.00 0.00 0.00 3.01
164 165 2.905415 AGGGCAATGGATGAAAGACA 57.095 45.000 0.00 0.00 0.00 3.41
165 166 2.450476 AGGGCAATGGATGAAAGACAC 58.550 47.619 0.00 0.00 0.00 3.67
166 167 1.478105 GGGCAATGGATGAAAGACACC 59.522 52.381 0.00 0.00 0.00 4.16
167 168 1.133025 GGCAATGGATGAAAGACACCG 59.867 52.381 0.00 0.00 0.00 4.94
168 169 2.083774 GCAATGGATGAAAGACACCGA 58.916 47.619 0.00 0.00 0.00 4.69
169 170 2.487762 GCAATGGATGAAAGACACCGAA 59.512 45.455 0.00 0.00 0.00 4.30
170 171 3.426695 GCAATGGATGAAAGACACCGAAG 60.427 47.826 0.00 0.00 0.00 3.79
171 172 3.703001 ATGGATGAAAGACACCGAAGT 57.297 42.857 0.00 0.00 0.00 3.01
172 173 4.819105 ATGGATGAAAGACACCGAAGTA 57.181 40.909 0.00 0.00 0.00 2.24
173 174 4.819105 TGGATGAAAGACACCGAAGTAT 57.181 40.909 0.00 0.00 0.00 2.12
174 175 5.925506 TGGATGAAAGACACCGAAGTATA 57.074 39.130 0.00 0.00 0.00 1.47
175 176 6.288941 TGGATGAAAGACACCGAAGTATAA 57.711 37.500 0.00 0.00 0.00 0.98
176 177 6.103997 TGGATGAAAGACACCGAAGTATAAC 58.896 40.000 0.00 0.00 0.00 1.89
177 178 5.522824 GGATGAAAGACACCGAAGTATAACC 59.477 44.000 0.00 0.00 0.00 2.85
178 179 5.733620 TGAAAGACACCGAAGTATAACCT 57.266 39.130 0.00 0.00 0.00 3.50
179 180 6.839124 TGAAAGACACCGAAGTATAACCTA 57.161 37.500 0.00 0.00 0.00 3.08
180 181 6.624423 TGAAAGACACCGAAGTATAACCTAC 58.376 40.000 0.00 0.00 0.00 3.18
181 182 6.435277 TGAAAGACACCGAAGTATAACCTACT 59.565 38.462 0.00 0.00 0.00 2.57
182 183 7.611467 TGAAAGACACCGAAGTATAACCTACTA 59.389 37.037 0.00 0.00 0.00 1.82
183 184 8.530804 AAAGACACCGAAGTATAACCTACTAT 57.469 34.615 0.00 0.00 0.00 2.12
184 185 7.742556 AGACACCGAAGTATAACCTACTATC 57.257 40.000 0.00 0.00 0.00 2.08
185 186 7.285566 AGACACCGAAGTATAACCTACTATCA 58.714 38.462 0.00 0.00 0.00 2.15
186 187 7.776969 AGACACCGAAGTATAACCTACTATCAA 59.223 37.037 0.00 0.00 0.00 2.57
187 188 8.474710 ACACCGAAGTATAACCTACTATCAAT 57.525 34.615 0.00 0.00 0.00 2.57
188 189 9.578576 ACACCGAAGTATAACCTACTATCAATA 57.421 33.333 0.00 0.00 0.00 1.90
189 190 9.837525 CACCGAAGTATAACCTACTATCAATAC 57.162 37.037 0.00 0.00 0.00 1.89
190 191 9.578576 ACCGAAGTATAACCTACTATCAATACA 57.421 33.333 0.00 0.00 0.00 2.29
201 202 8.950210 ACCTACTATCAATACATTGCAATATGC 58.050 33.333 12.53 0.00 45.29 3.14
214 215 4.891277 GCAATATGCATAAATTGTCGCC 57.109 40.909 18.82 3.89 44.26 5.54
215 216 3.361644 GCAATATGCATAAATTGTCGCCG 59.638 43.478 18.82 0.00 44.26 6.46
216 217 2.679355 TATGCATAAATTGTCGCCGC 57.321 45.000 3.27 0.00 0.00 6.53
217 218 1.024271 ATGCATAAATTGTCGCCGCT 58.976 45.000 0.00 0.00 0.00 5.52
218 219 0.376852 TGCATAAATTGTCGCCGCTC 59.623 50.000 0.00 0.00 0.00 5.03
219 220 0.317020 GCATAAATTGTCGCCGCTCC 60.317 55.000 0.00 0.00 0.00 4.70
220 221 1.299541 CATAAATTGTCGCCGCTCCT 58.700 50.000 0.00 0.00 0.00 3.69
221 222 1.003545 CATAAATTGTCGCCGCTCCTG 60.004 52.381 0.00 0.00 0.00 3.86
222 223 0.036765 TAAATTGTCGCCGCTCCTGT 60.037 50.000 0.00 0.00 0.00 4.00
223 224 1.298859 AAATTGTCGCCGCTCCTGTC 61.299 55.000 0.00 0.00 0.00 3.51
224 225 3.989698 ATTGTCGCCGCTCCTGTCG 62.990 63.158 0.00 0.00 0.00 4.35
230 231 4.147449 CCGCTCCTGTCGCCATGA 62.147 66.667 0.00 0.00 0.00 3.07
231 232 2.125552 CGCTCCTGTCGCCATGAA 60.126 61.111 0.00 0.00 0.00 2.57
232 233 1.741401 CGCTCCTGTCGCCATGAAA 60.741 57.895 0.00 0.00 0.00 2.69
233 234 1.796796 GCTCCTGTCGCCATGAAAC 59.203 57.895 0.00 0.00 0.00 2.78
234 235 1.648467 GCTCCTGTCGCCATGAAACC 61.648 60.000 0.00 0.00 0.00 3.27
235 236 1.361668 CTCCTGTCGCCATGAAACCG 61.362 60.000 0.00 0.00 0.00 4.44
236 237 1.671054 CCTGTCGCCATGAAACCGT 60.671 57.895 0.00 0.00 0.00 4.83
237 238 1.635663 CCTGTCGCCATGAAACCGTC 61.636 60.000 0.00 0.00 0.00 4.79
238 239 1.635663 CTGTCGCCATGAAACCGTCC 61.636 60.000 0.00 0.00 0.00 4.79
239 240 1.669760 GTCGCCATGAAACCGTCCA 60.670 57.895 0.00 0.00 0.00 4.02
240 241 1.071642 TCGCCATGAAACCGTCCAA 59.928 52.632 0.00 0.00 0.00 3.53
241 242 0.953471 TCGCCATGAAACCGTCCAAG 60.953 55.000 0.00 0.00 0.00 3.61
242 243 1.234615 CGCCATGAAACCGTCCAAGT 61.235 55.000 0.00 0.00 0.00 3.16
243 244 0.958822 GCCATGAAACCGTCCAAGTT 59.041 50.000 0.00 0.00 0.00 2.66
244 245 1.068541 GCCATGAAACCGTCCAAGTTC 60.069 52.381 0.00 0.00 0.00 3.01
245 246 2.226330 CCATGAAACCGTCCAAGTTCA 58.774 47.619 0.00 0.00 0.00 3.18
246 247 2.819608 CCATGAAACCGTCCAAGTTCAT 59.180 45.455 0.00 0.00 0.00 2.57
247 248 3.119849 CCATGAAACCGTCCAAGTTCATC 60.120 47.826 0.00 0.00 0.00 2.92
248 249 2.139917 TGAAACCGTCCAAGTTCATCG 58.860 47.619 0.00 0.00 0.00 3.84
249 250 2.140717 GAAACCGTCCAAGTTCATCGT 58.859 47.619 0.00 0.00 0.00 3.73
250 251 1.508632 AACCGTCCAAGTTCATCGTG 58.491 50.000 0.00 0.00 0.00 4.35
251 252 0.391597 ACCGTCCAAGTTCATCGTGT 59.608 50.000 0.00 0.00 0.00 4.49
252 253 1.202604 ACCGTCCAAGTTCATCGTGTT 60.203 47.619 0.00 0.00 0.00 3.32
253 254 1.194547 CCGTCCAAGTTCATCGTGTTG 59.805 52.381 0.00 0.00 0.00 3.33
254 255 2.131972 CGTCCAAGTTCATCGTGTTGA 58.868 47.619 0.00 0.00 0.00 3.18
255 256 2.736721 CGTCCAAGTTCATCGTGTTGAT 59.263 45.455 0.00 0.00 38.01 2.57
256 257 3.186409 CGTCCAAGTTCATCGTGTTGATT 59.814 43.478 0.00 0.00 34.13 2.57
257 258 4.387559 CGTCCAAGTTCATCGTGTTGATTA 59.612 41.667 0.00 0.00 34.13 1.75
258 259 5.618561 GTCCAAGTTCATCGTGTTGATTAC 58.381 41.667 0.00 0.00 34.13 1.89
259 260 5.408604 GTCCAAGTTCATCGTGTTGATTACT 59.591 40.000 0.00 0.00 34.13 2.24
260 261 5.995282 TCCAAGTTCATCGTGTTGATTACTT 59.005 36.000 0.00 0.00 38.77 2.24
261 262 6.147164 TCCAAGTTCATCGTGTTGATTACTTC 59.853 38.462 0.00 0.00 37.32 3.01
262 263 6.307155 CAAGTTCATCGTGTTGATTACTTCC 58.693 40.000 0.00 0.00 37.32 3.46
263 264 5.547465 AGTTCATCGTGTTGATTACTTCCA 58.453 37.500 0.00 0.00 34.13 3.53
264 265 5.639506 AGTTCATCGTGTTGATTACTTCCAG 59.360 40.000 0.00 0.00 34.13 3.86
265 266 5.400066 TCATCGTGTTGATTACTTCCAGA 57.600 39.130 0.00 0.00 34.13 3.86
266 267 5.168569 TCATCGTGTTGATTACTTCCAGAC 58.831 41.667 0.00 0.00 34.13 3.51
267 268 4.594123 TCGTGTTGATTACTTCCAGACA 57.406 40.909 0.00 0.00 0.00 3.41
268 269 4.556233 TCGTGTTGATTACTTCCAGACAG 58.444 43.478 0.00 0.00 0.00 3.51
269 270 4.038763 TCGTGTTGATTACTTCCAGACAGT 59.961 41.667 0.00 0.00 0.00 3.55
270 271 4.386049 CGTGTTGATTACTTCCAGACAGTC 59.614 45.833 0.00 0.00 0.00 3.51
271 272 5.542779 GTGTTGATTACTTCCAGACAGTCT 58.457 41.667 0.00 0.00 0.00 3.24
272 273 6.569801 CGTGTTGATTACTTCCAGACAGTCTA 60.570 42.308 1.67 0.00 0.00 2.59
273 274 6.586844 GTGTTGATTACTTCCAGACAGTCTAC 59.413 42.308 1.67 0.00 0.00 2.59
274 275 6.493802 TGTTGATTACTTCCAGACAGTCTACT 59.506 38.462 1.67 0.00 0.00 2.57
275 276 7.015292 TGTTGATTACTTCCAGACAGTCTACTT 59.985 37.037 1.67 0.00 0.00 2.24
276 277 6.925211 TGATTACTTCCAGACAGTCTACTTG 58.075 40.000 1.67 0.00 0.00 3.16
277 278 6.719829 TGATTACTTCCAGACAGTCTACTTGA 59.280 38.462 1.67 0.00 0.00 3.02
278 279 6.576662 TTACTTCCAGACAGTCTACTTGAG 57.423 41.667 1.67 0.47 0.00 3.02
279 280 4.730966 ACTTCCAGACAGTCTACTTGAGA 58.269 43.478 1.67 0.00 0.00 3.27
296 297 1.133407 GAGACGTGGAGGCTACTTGAG 59.867 57.143 0.00 0.00 39.26 3.02
299 300 0.179161 CGTGGAGGCTACTTGAGACG 60.179 60.000 0.00 0.00 38.79 4.18
379 392 0.620410 TTGTCTCCCACCCGGATGAT 60.620 55.000 0.73 0.00 41.00 2.45
390 403 5.514834 CCCACCCGGATGATCAGTAAAATAT 60.515 44.000 0.73 0.00 0.00 1.28
460 476 3.857549 TTGTGTTAGTGTTGCAAGCAA 57.142 38.095 0.00 2.89 0.00 3.91
505 521 1.368850 GCAGTGTTGTTTCGACGGC 60.369 57.895 0.00 0.00 0.00 5.68
544 560 5.014202 GGGTGTGACATTTTAGGGTAACAT 58.986 41.667 0.00 0.00 31.32 2.71
545 561 6.181908 GGGTGTGACATTTTAGGGTAACATA 58.818 40.000 0.00 0.00 31.32 2.29
547 563 7.012989 GGGTGTGACATTTTAGGGTAACATATC 59.987 40.741 0.00 0.00 31.32 1.63
548 564 7.254658 GGTGTGACATTTTAGGGTAACATATCG 60.255 40.741 0.00 0.00 31.32 2.92
550 566 8.476447 TGTGACATTTTAGGGTAACATATCGTA 58.524 33.333 0.00 0.00 39.74 3.43
551 567 8.975439 GTGACATTTTAGGGTAACATATCGTAG 58.025 37.037 0.00 0.00 39.74 3.51
584 1136 3.966026 GACGAGCGGGTCACGGAAG 62.966 68.421 8.06 0.00 44.51 3.46
585 1137 4.796231 CGAGCGGGTCACGGAAGG 62.796 72.222 8.06 0.00 44.51 3.46
586 1138 4.452733 GAGCGGGTCACGGAAGGG 62.453 72.222 1.64 0.00 44.51 3.95
596 1148 0.250124 CACGGAAGGGTGCAGTAACA 60.250 55.000 0.00 0.00 0.00 2.41
609 1161 5.499047 GTGCAGTAACAATATTTCGTAGCC 58.501 41.667 0.00 0.00 0.00 3.93
614 1166 5.689068 AGTAACAATATTTCGTAGCCGTAGC 59.311 40.000 0.00 0.00 40.32 3.58
645 1200 4.981806 TCAAGTGGCCAATTATAAGTGC 57.018 40.909 19.60 0.00 0.00 4.40
646 1201 3.699038 TCAAGTGGCCAATTATAAGTGCC 59.301 43.478 19.60 15.15 0.00 5.01
649 1204 0.313987 GGCCAATTATAAGTGCCGCC 59.686 55.000 14.57 14.57 0.00 6.13
687 1250 4.047822 GCATCCACAAATGTTGTTTTCGA 58.952 39.130 0.00 0.00 43.23 3.71
691 1254 3.119463 CCACAAATGTTGTTTTCGATCGC 59.881 43.478 11.09 0.00 43.23 4.58
746 1309 0.595588 TTACACGCCAGGCAACAATG 59.404 50.000 13.30 3.71 41.41 2.82
767 1330 4.345288 TGATAATGTCTGTACGTACGCAC 58.655 43.478 20.18 14.06 0.00 5.34
787 1350 2.966509 CGTACGCCACGTAAAACAAAA 58.033 42.857 0.52 0.00 43.95 2.44
865 1429 2.543067 ATTCCTCTTCCACTGCCGCC 62.543 60.000 0.00 0.00 0.00 6.13
924 1492 2.146342 GGCCGGAACACTGATATGATG 58.854 52.381 5.05 0.00 0.00 3.07
931 1499 7.326454 CCGGAACACTGATATGATGATAATCT 58.674 38.462 0.00 0.00 0.00 2.40
932 1500 8.470002 CCGGAACACTGATATGATGATAATCTA 58.530 37.037 0.00 0.00 0.00 1.98
998 1602 3.288964 GGACAGGAAGGATCGTCTTCTA 58.711 50.000 10.40 0.00 41.94 2.10
1005 1609 4.580995 GGAAGGATCGTCTTCTACATCTCA 59.419 45.833 10.40 0.00 41.94 3.27
1014 1618 0.673985 TCTACATCTCAATCCGGCCG 59.326 55.000 21.04 21.04 0.00 6.13
1063 1693 2.747855 CGCCTTTCCTGCTCACCC 60.748 66.667 0.00 0.00 0.00 4.61
1064 1694 2.361737 GCCTTTCCTGCTCACCCC 60.362 66.667 0.00 0.00 0.00 4.95
1065 1695 2.911926 GCCTTTCCTGCTCACCCCT 61.912 63.158 0.00 0.00 0.00 4.79
1082 1712 1.150536 CTCCTCCTCCTCCTCCTCG 59.849 68.421 0.00 0.00 0.00 4.63
1253 1883 9.740710 CCCCTATTAAATACTCCTCCTTAATTG 57.259 37.037 0.00 0.00 0.00 2.32
1278 1929 7.279981 TGTCCTCATGGTTAATTAATCAACGAG 59.720 37.037 22.63 22.63 33.31 4.18
1287 1938 4.750172 ATTAATCAACGAGTTCGCGTAC 57.250 40.909 7.91 7.91 44.86 3.67
1317 1968 2.968156 GTGTGCCACGCGTACCAA 60.968 61.111 13.44 0.00 0.00 3.67
1426 2077 0.395724 GGTCATCATCAACCACCCCC 60.396 60.000 0.00 0.00 35.53 5.40
1503 2154 2.668550 AACAACTTCCTCGCCGCC 60.669 61.111 0.00 0.00 0.00 6.13
1556 2207 3.414700 CAGCGGCAAGGTCGTCAC 61.415 66.667 1.45 0.00 31.29 3.67
1625 2276 1.134189 CCCAGGGATCCTCGGTAAAAC 60.134 57.143 12.58 0.00 26.94 2.43
1637 2288 5.104527 TCCTCGGTAAAACATCATTCCATCT 60.105 40.000 0.00 0.00 0.00 2.90
1643 2294 6.547141 GGTAAAACATCATTCCATCTCCATCA 59.453 38.462 0.00 0.00 0.00 3.07
1658 2309 6.312141 TCTCCATCACCATCAATCTTTACA 57.688 37.500 0.00 0.00 0.00 2.41
1716 2367 2.813908 GCGTGACGTGGGTGGATC 60.814 66.667 6.91 0.00 0.00 3.36
1717 2368 2.506217 CGTGACGTGGGTGGATCG 60.506 66.667 0.00 0.00 0.00 3.69
1718 2369 2.813908 GTGACGTGGGTGGATCGC 60.814 66.667 0.00 0.00 0.00 4.58
1719 2370 4.429212 TGACGTGGGTGGATCGCG 62.429 66.667 0.00 0.00 42.89 5.87
1818 2469 2.187163 GCCGGGTACAAGAGCCTC 59.813 66.667 2.18 0.00 44.22 4.70
2052 2703 2.657237 CTCAACGCCGAGTCCCTT 59.343 61.111 0.00 0.00 0.00 3.95
2057 2708 1.542187 AACGCCGAGTCCCTTAAGCT 61.542 55.000 0.00 0.00 0.00 3.74
2164 2815 0.734253 CAACGACCAGAGCCTCTTCG 60.734 60.000 12.95 12.95 34.08 3.79
2181 2832 0.108992 TCGTCTACATCGGCACCAAC 60.109 55.000 0.00 0.00 0.00 3.77
2435 3092 1.827399 GAAGGTGCCAAGGTCCTCGA 61.827 60.000 0.00 0.00 0.00 4.04
2680 3337 0.987715 GATCGATCCATGTCGCATCG 59.012 55.000 14.76 4.49 41.22 3.84
2687 3344 1.153568 CATGTCGCATCGGTCACCT 60.154 57.895 0.00 0.00 0.00 4.00
2737 3394 3.863424 ACGGTCGTGATTGCTGTAAATAG 59.137 43.478 0.00 0.00 0.00 1.73
2738 3395 3.863424 CGGTCGTGATTGCTGTAAATAGT 59.137 43.478 0.00 0.00 0.00 2.12
2739 3396 4.259810 CGGTCGTGATTGCTGTAAATAGTG 60.260 45.833 0.00 0.00 0.00 2.74
2740 3397 4.868171 GGTCGTGATTGCTGTAAATAGTGA 59.132 41.667 0.00 0.00 0.00 3.41
2741 3398 5.350365 GGTCGTGATTGCTGTAAATAGTGAA 59.650 40.000 0.00 0.00 0.00 3.18
2744 3401 8.056571 GTCGTGATTGCTGTAAATAGTGAATAC 58.943 37.037 0.00 0.00 0.00 1.89
2758 3415 4.578871 AGTGAATACTACATGCTGCACAA 58.421 39.130 3.57 0.00 34.74 3.33
2843 3511 4.074526 GGAGGTGCGCTGCTCTCA 62.075 66.667 9.73 0.00 33.76 3.27
2871 3539 1.003580 TGGCTCACATGGGTCTTCTTC 59.996 52.381 0.00 0.00 0.00 2.87
2906 3574 0.824109 TCTATCGTGAGGGCTGGTTG 59.176 55.000 0.00 0.00 0.00 3.77
2928 3596 5.063204 TGGATGTTTGTCTTCGATGAAGTT 58.937 37.500 2.09 0.00 40.24 2.66
2930 3598 5.179368 GGATGTTTGTCTTCGATGAAGTTGA 59.821 40.000 2.09 0.00 40.24 3.18
2973 3641 0.397675 AGGATGATGACGCCTCCAGA 60.398 55.000 0.00 0.00 0.00 3.86
2975 3643 1.035923 GATGATGACGCCTCCAGAGA 58.964 55.000 0.00 0.00 0.00 3.10
2995 3663 6.758416 CAGAGAAGAAATGGTTGACGATGATA 59.242 38.462 0.00 0.00 0.00 2.15
3064 3732 2.669569 ATGTGTGTGTGCCGCTCC 60.670 61.111 0.00 0.00 0.00 4.70
3107 3775 4.498520 CTCGCGCTCGTCCATGGT 62.499 66.667 12.58 0.00 36.96 3.55
3110 3778 1.807981 CGCGCTCGTCCATGGTAAA 60.808 57.895 12.58 0.00 0.00 2.01
3134 3802 4.795278 GCGATTTAGAGTTTCAGGCAAATG 59.205 41.667 0.00 0.00 0.00 2.32
3200 3868 5.721876 TTATACAAAATCGGCTAACACGG 57.278 39.130 0.00 0.00 0.00 4.94
3204 3872 4.004982 ACAAAATCGGCTAACACGGTTAT 58.995 39.130 0.00 0.00 32.83 1.89
3208 3876 4.660789 ATCGGCTAACACGGTTATAGTT 57.339 40.909 0.00 0.00 0.00 2.24
3211 3879 6.147864 TCGGCTAACACGGTTATAGTTAAT 57.852 37.500 0.00 0.00 0.00 1.40
3214 3882 7.809331 TCGGCTAACACGGTTATAGTTAATATG 59.191 37.037 0.00 0.00 0.00 1.78
3424 4109 6.814146 AGAGGAGAATAGAGTTTTACAAAGCG 59.186 38.462 0.00 0.00 0.00 4.68
3434 4119 0.031449 TTACAAAGCGCCCACAAAGC 59.969 50.000 2.29 0.00 0.00 3.51
3436 4121 1.005867 CAAAGCGCCCACAAAGCAT 60.006 52.632 2.29 0.00 0.00 3.79
3437 4122 0.600782 CAAAGCGCCCACAAAGCATT 60.601 50.000 2.29 0.00 0.00 3.56
3455 4140 0.109179 TTGCATGACAATTGCTCGCC 60.109 50.000 5.05 0.00 40.77 5.54
3469 4154 4.150897 TGCTCGCCCAAAATAATAGACT 57.849 40.909 0.00 0.00 0.00 3.24
3473 4158 5.635700 GCTCGCCCAAAATAATAGACTCTAG 59.364 44.000 0.00 0.00 0.00 2.43
3478 4163 8.674607 CGCCCAAAATAATAGACTCTAGTTTTT 58.325 33.333 0.00 0.00 0.00 1.94
3571 4256 0.397941 TGGCTCCTAGGTGCATATGC 59.602 55.000 31.19 21.09 42.50 3.14
3622 4308 8.942669 AAAGTTGAAAAATTCGGAACAAAAAC 57.057 26.923 0.00 0.00 30.03 2.43
3630 4316 2.194889 GGAACAAAAACCCCGCGGA 61.195 57.895 30.73 0.00 0.00 5.54
3671 5304 1.268999 GCATGCACAAAGTTTCGGTGA 60.269 47.619 14.21 0.00 34.52 4.02
3744 6386 1.813178 TCACCGAAAACTTTGTGCACA 59.187 42.857 17.42 17.42 0.00 4.57
3766 6408 7.170828 GCACACACATAGAATGTTCGGATATAA 59.829 37.037 0.00 0.00 42.70 0.98
3780 6422 4.024725 TCGGATATAAACGCGGGATTTTTG 60.025 41.667 12.47 0.00 0.00 2.44
3783 6425 6.037726 GGATATAAACGCGGGATTTTTGTTT 58.962 36.000 12.47 0.42 36.74 2.83
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.736447 ATTTGATCTAATAAAGAGGCCGAAG 57.264 36.000 0.00 0.00 37.74 3.79
1 2 9.052759 GTTATTTGATCTAATAAAGAGGCCGAA 57.947 33.333 19.49 0.00 37.74 4.30
2 3 7.660208 GGTTATTTGATCTAATAAAGAGGCCGA 59.340 37.037 19.49 0.00 37.74 5.54
3 4 7.360101 CGGTTATTTGATCTAATAAAGAGGCCG 60.360 40.741 21.85 21.85 37.74 6.13
5 6 8.379457 ACGGTTATTTGATCTAATAAAGAGGC 57.621 34.615 19.49 9.90 37.74 4.70
14 15 9.268268 GGATGATGTAACGGTTATTTGATCTAA 57.732 33.333 3.59 0.00 0.00 2.10
15 16 8.425703 TGGATGATGTAACGGTTATTTGATCTA 58.574 33.333 3.59 0.34 0.00 1.98
16 17 7.226720 GTGGATGATGTAACGGTTATTTGATCT 59.773 37.037 3.59 0.00 0.00 2.75
17 18 7.226720 AGTGGATGATGTAACGGTTATTTGATC 59.773 37.037 3.59 4.39 0.00 2.92
18 19 7.054124 AGTGGATGATGTAACGGTTATTTGAT 58.946 34.615 3.59 0.00 0.00 2.57
19 20 6.411376 AGTGGATGATGTAACGGTTATTTGA 58.589 36.000 3.59 0.00 0.00 2.69
20 21 6.677781 AGTGGATGATGTAACGGTTATTTG 57.322 37.500 3.59 0.00 0.00 2.32
21 22 6.482308 GCTAGTGGATGATGTAACGGTTATTT 59.518 38.462 3.59 0.00 0.00 1.40
22 23 5.989777 GCTAGTGGATGATGTAACGGTTATT 59.010 40.000 3.59 0.00 0.00 1.40
23 24 5.510861 GGCTAGTGGATGATGTAACGGTTAT 60.511 44.000 3.59 0.00 0.00 1.89
24 25 4.202182 GGCTAGTGGATGATGTAACGGTTA 60.202 45.833 0.00 0.00 0.00 2.85
25 26 3.431766 GGCTAGTGGATGATGTAACGGTT 60.432 47.826 0.00 0.00 0.00 4.44
26 27 2.102588 GGCTAGTGGATGATGTAACGGT 59.897 50.000 0.00 0.00 0.00 4.83
27 28 2.102420 TGGCTAGTGGATGATGTAACGG 59.898 50.000 0.00 0.00 0.00 4.44
28 29 3.123804 GTGGCTAGTGGATGATGTAACG 58.876 50.000 0.00 0.00 0.00 3.18
29 30 3.134804 AGGTGGCTAGTGGATGATGTAAC 59.865 47.826 0.00 0.00 0.00 2.50
30 31 3.384168 AGGTGGCTAGTGGATGATGTAA 58.616 45.455 0.00 0.00 0.00 2.41
31 32 3.046283 AGGTGGCTAGTGGATGATGTA 57.954 47.619 0.00 0.00 0.00 2.29
32 33 1.885049 AGGTGGCTAGTGGATGATGT 58.115 50.000 0.00 0.00 0.00 3.06
33 34 3.134623 TGTAAGGTGGCTAGTGGATGATG 59.865 47.826 0.00 0.00 0.00 3.07
34 35 3.384168 TGTAAGGTGGCTAGTGGATGAT 58.616 45.455 0.00 0.00 0.00 2.45
35 36 2.827755 TGTAAGGTGGCTAGTGGATGA 58.172 47.619 0.00 0.00 0.00 2.92
36 37 3.627395 TTGTAAGGTGGCTAGTGGATG 57.373 47.619 0.00 0.00 0.00 3.51
37 38 5.216622 TCTATTGTAAGGTGGCTAGTGGAT 58.783 41.667 0.00 0.00 0.00 3.41
38 39 4.616553 TCTATTGTAAGGTGGCTAGTGGA 58.383 43.478 0.00 0.00 0.00 4.02
39 40 5.552870 ATCTATTGTAAGGTGGCTAGTGG 57.447 43.478 0.00 0.00 0.00 4.00
40 41 6.456501 GGTATCTATTGTAAGGTGGCTAGTG 58.543 44.000 0.00 0.00 0.00 2.74
41 42 5.243283 CGGTATCTATTGTAAGGTGGCTAGT 59.757 44.000 0.00 0.00 0.00 2.57
42 43 5.336531 CCGGTATCTATTGTAAGGTGGCTAG 60.337 48.000 0.00 0.00 0.00 3.42
43 44 4.525487 CCGGTATCTATTGTAAGGTGGCTA 59.475 45.833 0.00 0.00 0.00 3.93
44 45 3.323979 CCGGTATCTATTGTAAGGTGGCT 59.676 47.826 0.00 0.00 0.00 4.75
45 46 3.070590 ACCGGTATCTATTGTAAGGTGGC 59.929 47.826 4.49 0.00 0.00 5.01
46 47 4.628074 CACCGGTATCTATTGTAAGGTGG 58.372 47.826 6.87 0.00 42.82 4.61
47 48 4.100498 ACCACCGGTATCTATTGTAAGGTG 59.900 45.833 6.87 4.47 45.24 4.00
48 49 4.292643 ACCACCGGTATCTATTGTAAGGT 58.707 43.478 6.87 2.24 32.11 3.50
49 50 4.950205 ACCACCGGTATCTATTGTAAGG 57.050 45.455 6.87 1.46 32.11 2.69
50 51 5.070047 AGGAACCACCGGTATCTATTGTAAG 59.930 44.000 6.87 0.00 44.74 2.34
51 52 4.964262 AGGAACCACCGGTATCTATTGTAA 59.036 41.667 6.87 0.00 44.74 2.41
52 53 4.549668 AGGAACCACCGGTATCTATTGTA 58.450 43.478 6.87 0.00 44.74 2.41
53 54 3.381335 AGGAACCACCGGTATCTATTGT 58.619 45.455 6.87 0.00 44.74 2.71
54 55 3.552273 CGAGGAACCACCGGTATCTATTG 60.552 52.174 6.87 0.00 44.74 1.90
55 56 2.626743 CGAGGAACCACCGGTATCTATT 59.373 50.000 6.87 0.00 44.74 1.73
56 57 2.158564 TCGAGGAACCACCGGTATCTAT 60.159 50.000 6.87 0.00 44.74 1.98
57 58 1.212688 TCGAGGAACCACCGGTATCTA 59.787 52.381 6.87 0.00 44.74 1.98
58 59 0.033796 TCGAGGAACCACCGGTATCT 60.034 55.000 6.87 0.00 44.74 1.98
59 60 0.101939 GTCGAGGAACCACCGGTATC 59.898 60.000 6.87 6.19 44.74 2.24
60 61 1.325476 GGTCGAGGAACCACCGGTAT 61.325 60.000 6.87 0.00 44.74 2.73
61 62 1.978617 GGTCGAGGAACCACCGGTA 60.979 63.158 6.87 0.00 44.74 4.02
62 63 3.308705 GGTCGAGGAACCACCGGT 61.309 66.667 0.00 0.00 44.74 5.28
63 64 4.078516 GGGTCGAGGAACCACCGG 62.079 72.222 0.00 0.00 39.63 5.28
64 65 3.307906 TGGGTCGAGGAACCACCG 61.308 66.667 0.00 0.00 42.31 4.94
68 69 1.666872 CGTTGTGGGTCGAGGAACC 60.667 63.158 0.00 0.00 40.41 3.62
69 70 0.666577 CTCGTTGTGGGTCGAGGAAC 60.667 60.000 6.67 0.00 46.26 3.62
70 71 1.663739 CTCGTTGTGGGTCGAGGAA 59.336 57.895 6.67 0.00 46.26 3.36
71 72 3.362262 CTCGTTGTGGGTCGAGGA 58.638 61.111 6.67 0.00 46.26 3.71
80 81 0.464735 TCAAACCCACCCTCGTTGTG 60.465 55.000 0.00 0.00 0.00 3.33
81 82 0.179029 CTCAAACCCACCCTCGTTGT 60.179 55.000 0.00 0.00 0.00 3.32
82 83 0.107831 TCTCAAACCCACCCTCGTTG 59.892 55.000 0.00 0.00 0.00 4.10
83 84 0.108019 GTCTCAAACCCACCCTCGTT 59.892 55.000 0.00 0.00 0.00 3.85
84 85 1.752833 GTCTCAAACCCACCCTCGT 59.247 57.895 0.00 0.00 0.00 4.18
85 86 1.003718 GGTCTCAAACCCACCCTCG 60.004 63.158 0.00 0.00 42.85 4.63
86 87 1.003718 CGGTCTCAAACCCACCCTC 60.004 63.158 0.00 0.00 46.27 4.30
87 88 3.157680 CGGTCTCAAACCCACCCT 58.842 61.111 0.00 0.00 46.27 4.34
88 89 2.671963 GCGGTCTCAAACCCACCC 60.672 66.667 0.00 0.00 46.27 4.61
89 90 2.671963 GGCGGTCTCAAACCCACC 60.672 66.667 0.00 0.00 46.27 4.61
90 91 1.527380 TTGGCGGTCTCAAACCCAC 60.527 57.895 0.00 0.00 46.27 4.61
91 92 1.527380 GTTGGCGGTCTCAAACCCA 60.527 57.895 0.00 0.00 46.27 4.51
92 93 2.265904 GGTTGGCGGTCTCAAACCC 61.266 63.158 0.00 0.00 46.27 4.11
93 94 0.035739 TAGGTTGGCGGTCTCAAACC 59.964 55.000 0.00 0.00 45.45 3.27
94 95 1.439679 CTAGGTTGGCGGTCTCAAAC 58.560 55.000 0.00 0.00 32.38 2.93
95 96 0.321298 GCTAGGTTGGCGGTCTCAAA 60.321 55.000 0.00 0.00 0.00 2.69
96 97 1.192146 AGCTAGGTTGGCGGTCTCAA 61.192 55.000 0.00 0.00 34.52 3.02
97 98 0.323999 TAGCTAGGTTGGCGGTCTCA 60.324 55.000 0.00 0.00 34.52 3.27
98 99 0.386113 CTAGCTAGGTTGGCGGTCTC 59.614 60.000 13.32 0.00 34.52 3.36
99 100 1.677637 GCTAGCTAGGTTGGCGGTCT 61.678 60.000 22.10 0.00 34.52 3.85
100 101 1.227292 GCTAGCTAGGTTGGCGGTC 60.227 63.158 22.10 0.00 34.52 4.79
101 102 1.677637 GAGCTAGCTAGGTTGGCGGT 61.678 60.000 25.38 2.52 33.58 5.68
102 103 1.068250 GAGCTAGCTAGGTTGGCGG 59.932 63.158 25.38 0.00 33.58 6.13
103 104 0.390860 ATGAGCTAGCTAGGTTGGCG 59.609 55.000 25.38 0.00 33.58 5.69
104 105 1.414181 TCATGAGCTAGCTAGGTTGGC 59.586 52.381 25.38 13.98 33.58 4.52
105 106 2.961741 TCTCATGAGCTAGCTAGGTTGG 59.038 50.000 25.38 17.25 33.58 3.77
106 107 3.888323 TCTCTCATGAGCTAGCTAGGTTG 59.112 47.826 25.38 19.95 40.03 3.77
107 108 3.888930 GTCTCTCATGAGCTAGCTAGGTT 59.111 47.826 25.38 9.05 40.03 3.50
108 109 3.117701 TGTCTCTCATGAGCTAGCTAGGT 60.118 47.826 24.94 24.94 40.03 3.08
109 110 3.253188 GTGTCTCTCATGAGCTAGCTAGG 59.747 52.174 19.38 10.29 40.03 3.02
110 111 3.882288 TGTGTCTCTCATGAGCTAGCTAG 59.118 47.826 19.38 16.84 40.03 3.42
111 112 3.882288 CTGTGTCTCTCATGAGCTAGCTA 59.118 47.826 19.38 6.79 40.03 3.32
112 113 2.689471 CTGTGTCTCTCATGAGCTAGCT 59.311 50.000 19.45 19.45 40.03 3.32
113 114 2.426738 ACTGTGTCTCTCATGAGCTAGC 59.573 50.000 18.36 6.62 40.03 3.42
114 115 4.717233 AACTGTGTCTCTCATGAGCTAG 57.283 45.455 18.36 11.24 40.03 3.42
115 116 4.814147 CAAACTGTGTCTCTCATGAGCTA 58.186 43.478 18.36 5.30 40.03 3.32
116 117 3.661944 CAAACTGTGTCTCTCATGAGCT 58.338 45.455 18.36 0.00 40.03 4.09
117 118 2.159234 GCAAACTGTGTCTCTCATGAGC 59.841 50.000 18.36 4.87 40.03 4.26
118 119 2.740981 GGCAAACTGTGTCTCTCATGAG 59.259 50.000 17.07 17.07 41.51 2.90
119 120 2.369860 AGGCAAACTGTGTCTCTCATGA 59.630 45.455 0.00 0.00 37.84 3.07
120 121 2.775890 AGGCAAACTGTGTCTCTCATG 58.224 47.619 0.00 0.00 37.84 3.07
127 128 2.427506 CCTAAGGAGGCAAACTGTGTC 58.572 52.381 0.00 0.00 35.54 3.67
128 129 1.073923 CCCTAAGGAGGCAAACTGTGT 59.926 52.381 0.00 0.00 42.21 3.72
129 130 1.826385 CCCTAAGGAGGCAAACTGTG 58.174 55.000 0.00 0.00 42.21 3.66
138 139 1.776667 TCATCCATTGCCCTAAGGAGG 59.223 52.381 0.00 0.00 43.33 4.30
139 140 3.582998 TTCATCCATTGCCCTAAGGAG 57.417 47.619 0.00 0.00 32.91 3.69
140 141 3.527253 TCTTTCATCCATTGCCCTAAGGA 59.473 43.478 0.00 0.00 33.47 3.36
141 142 3.633986 GTCTTTCATCCATTGCCCTAAGG 59.366 47.826 0.00 0.00 0.00 2.69
142 143 4.096984 GTGTCTTTCATCCATTGCCCTAAG 59.903 45.833 0.00 0.00 0.00 2.18
143 144 4.016444 GTGTCTTTCATCCATTGCCCTAA 58.984 43.478 0.00 0.00 0.00 2.69
144 145 3.620488 GTGTCTTTCATCCATTGCCCTA 58.380 45.455 0.00 0.00 0.00 3.53
145 146 2.450476 GTGTCTTTCATCCATTGCCCT 58.550 47.619 0.00 0.00 0.00 5.19
146 147 1.478105 GGTGTCTTTCATCCATTGCCC 59.522 52.381 0.00 0.00 0.00 5.36
147 148 1.133025 CGGTGTCTTTCATCCATTGCC 59.867 52.381 0.00 0.00 0.00 4.52
148 149 2.083774 TCGGTGTCTTTCATCCATTGC 58.916 47.619 0.00 0.00 0.00 3.56
149 150 3.753272 ACTTCGGTGTCTTTCATCCATTG 59.247 43.478 0.00 0.00 0.00 2.82
150 151 4.021102 ACTTCGGTGTCTTTCATCCATT 57.979 40.909 0.00 0.00 0.00 3.16
151 152 3.703001 ACTTCGGTGTCTTTCATCCAT 57.297 42.857 0.00 0.00 0.00 3.41
152 153 4.819105 ATACTTCGGTGTCTTTCATCCA 57.181 40.909 0.00 0.00 0.00 3.41
153 154 5.522824 GGTTATACTTCGGTGTCTTTCATCC 59.477 44.000 0.00 0.00 0.00 3.51
154 155 6.338937 AGGTTATACTTCGGTGTCTTTCATC 58.661 40.000 0.00 0.00 0.00 2.92
155 156 6.295719 AGGTTATACTTCGGTGTCTTTCAT 57.704 37.500 0.00 0.00 0.00 2.57
156 157 5.733620 AGGTTATACTTCGGTGTCTTTCA 57.266 39.130 0.00 0.00 0.00 2.69
157 158 6.861144 AGTAGGTTATACTTCGGTGTCTTTC 58.139 40.000 0.00 0.00 0.00 2.62
158 159 6.847421 AGTAGGTTATACTTCGGTGTCTTT 57.153 37.500 0.00 0.00 0.00 2.52
159 160 7.776969 TGATAGTAGGTTATACTTCGGTGTCTT 59.223 37.037 0.00 0.00 0.00 3.01
160 161 7.285566 TGATAGTAGGTTATACTTCGGTGTCT 58.714 38.462 0.00 0.00 0.00 3.41
161 162 7.502120 TGATAGTAGGTTATACTTCGGTGTC 57.498 40.000 0.00 0.00 0.00 3.67
162 163 7.886629 TTGATAGTAGGTTATACTTCGGTGT 57.113 36.000 0.00 0.00 0.00 4.16
163 164 9.837525 GTATTGATAGTAGGTTATACTTCGGTG 57.162 37.037 0.00 0.00 0.00 4.94
164 165 9.578576 TGTATTGATAGTAGGTTATACTTCGGT 57.421 33.333 0.00 0.00 0.00 4.69
175 176 8.950210 GCATATTGCAATGTATTGATAGTAGGT 58.050 33.333 22.27 0.00 44.26 3.08
193 194 3.361644 CGGCGACAATTTATGCATATTGC 59.638 43.478 18.13 13.02 45.29 3.56
194 195 3.361644 GCGGCGACAATTTATGCATATTG 59.638 43.478 12.98 17.06 37.67 1.90
195 196 3.253188 AGCGGCGACAATTTATGCATATT 59.747 39.130 12.98 0.00 0.00 1.28
196 197 2.813754 AGCGGCGACAATTTATGCATAT 59.186 40.909 12.98 0.00 0.00 1.78
197 198 2.217750 AGCGGCGACAATTTATGCATA 58.782 42.857 12.98 1.16 0.00 3.14
198 199 1.002468 GAGCGGCGACAATTTATGCAT 60.002 47.619 12.98 3.79 0.00 3.96
199 200 0.376852 GAGCGGCGACAATTTATGCA 59.623 50.000 12.98 0.00 0.00 3.96
200 201 0.317020 GGAGCGGCGACAATTTATGC 60.317 55.000 12.98 0.00 0.00 3.14
201 202 1.003545 CAGGAGCGGCGACAATTTATG 60.004 52.381 12.98 0.00 0.00 1.90
202 203 1.299541 CAGGAGCGGCGACAATTTAT 58.700 50.000 12.98 0.00 0.00 1.40
203 204 0.036765 ACAGGAGCGGCGACAATTTA 60.037 50.000 12.98 0.00 0.00 1.40
204 205 1.298859 GACAGGAGCGGCGACAATTT 61.299 55.000 12.98 0.00 0.00 1.82
205 206 1.741770 GACAGGAGCGGCGACAATT 60.742 57.895 12.98 0.00 0.00 2.32
206 207 2.125512 GACAGGAGCGGCGACAAT 60.126 61.111 12.98 0.00 0.00 2.71
207 208 4.717629 CGACAGGAGCGGCGACAA 62.718 66.667 12.98 0.00 0.00 3.18
221 222 1.231958 TTGGACGGTTTCATGGCGAC 61.232 55.000 0.00 0.00 0.00 5.19
222 223 0.953471 CTTGGACGGTTTCATGGCGA 60.953 55.000 0.00 0.00 0.00 5.54
223 224 1.234615 ACTTGGACGGTTTCATGGCG 61.235 55.000 0.00 0.00 0.00 5.69
224 225 0.958822 AACTTGGACGGTTTCATGGC 59.041 50.000 0.00 0.00 0.00 4.40
225 226 2.226330 TGAACTTGGACGGTTTCATGG 58.774 47.619 0.00 0.00 0.00 3.66
226 227 3.424829 CGATGAACTTGGACGGTTTCATG 60.425 47.826 9.13 4.05 0.00 3.07
227 228 2.742053 CGATGAACTTGGACGGTTTCAT 59.258 45.455 5.02 5.02 0.00 2.57
228 229 2.139917 CGATGAACTTGGACGGTTTCA 58.860 47.619 0.00 0.00 0.00 2.69
229 230 2.096417 CACGATGAACTTGGACGGTTTC 60.096 50.000 0.00 0.00 0.00 2.78
230 231 1.871039 CACGATGAACTTGGACGGTTT 59.129 47.619 0.00 0.00 0.00 3.27
231 232 1.202604 ACACGATGAACTTGGACGGTT 60.203 47.619 0.00 0.00 0.00 4.44
232 233 0.391597 ACACGATGAACTTGGACGGT 59.608 50.000 0.00 0.00 0.00 4.83
233 234 1.194547 CAACACGATGAACTTGGACGG 59.805 52.381 0.00 0.00 0.00 4.79
234 235 2.131972 TCAACACGATGAACTTGGACG 58.868 47.619 0.00 0.00 0.00 4.79
235 236 4.749245 AATCAACACGATGAACTTGGAC 57.251 40.909 0.00 0.00 33.40 4.02
236 237 5.547465 AGTAATCAACACGATGAACTTGGA 58.453 37.500 0.00 0.00 33.40 3.53
237 238 5.862924 AGTAATCAACACGATGAACTTGG 57.137 39.130 0.00 0.00 33.40 3.61
238 239 6.073276 TGGAAGTAATCAACACGATGAACTTG 60.073 38.462 10.27 0.00 39.50 3.16
239 240 5.995282 TGGAAGTAATCAACACGATGAACTT 59.005 36.000 0.00 0.00 40.92 2.66
240 241 5.547465 TGGAAGTAATCAACACGATGAACT 58.453 37.500 0.00 0.00 34.27 3.01
241 242 5.637810 TCTGGAAGTAATCAACACGATGAAC 59.362 40.000 0.00 0.00 31.65 3.18
242 243 5.637810 GTCTGGAAGTAATCAACACGATGAA 59.362 40.000 0.00 0.00 31.65 2.57
243 244 5.168569 GTCTGGAAGTAATCAACACGATGA 58.831 41.667 0.00 0.00 31.65 2.92
244 245 4.929211 TGTCTGGAAGTAATCAACACGATG 59.071 41.667 0.00 0.00 31.65 3.84
245 246 5.147330 TGTCTGGAAGTAATCAACACGAT 57.853 39.130 0.00 0.00 32.38 3.73
246 247 4.038763 ACTGTCTGGAAGTAATCAACACGA 59.961 41.667 0.00 0.00 33.76 4.35
247 248 4.307432 ACTGTCTGGAAGTAATCAACACG 58.693 43.478 0.00 0.00 33.76 4.49
248 249 5.542779 AGACTGTCTGGAAGTAATCAACAC 58.457 41.667 10.00 0.00 33.76 3.32
249 250 5.808366 AGACTGTCTGGAAGTAATCAACA 57.192 39.130 10.00 0.00 33.76 3.33
250 251 6.926313 AGTAGACTGTCTGGAAGTAATCAAC 58.074 40.000 20.19 5.79 33.76 3.18
251 252 7.232737 TCAAGTAGACTGTCTGGAAGTAATCAA 59.767 37.037 20.19 0.00 33.76 2.57
252 253 6.719829 TCAAGTAGACTGTCTGGAAGTAATCA 59.280 38.462 20.19 0.00 33.76 2.57
253 254 7.121463 TCTCAAGTAGACTGTCTGGAAGTAATC 59.879 40.741 20.19 0.56 33.76 1.75
254 255 6.948886 TCTCAAGTAGACTGTCTGGAAGTAAT 59.051 38.462 20.19 0.00 33.76 1.89
255 256 6.304624 TCTCAAGTAGACTGTCTGGAAGTAA 58.695 40.000 20.19 0.00 33.76 2.24
256 257 5.877491 TCTCAAGTAGACTGTCTGGAAGTA 58.123 41.667 20.19 0.00 33.76 2.24
257 258 4.730966 TCTCAAGTAGACTGTCTGGAAGT 58.269 43.478 20.19 0.57 33.76 3.01
269 270 1.174783 GCCTCCACGTCTCAAGTAGA 58.825 55.000 0.00 0.00 0.00 2.59
270 271 1.178276 AGCCTCCACGTCTCAAGTAG 58.822 55.000 0.00 0.00 0.00 2.57
271 272 2.089980 GTAGCCTCCACGTCTCAAGTA 58.910 52.381 0.00 0.00 0.00 2.24
272 273 0.889306 GTAGCCTCCACGTCTCAAGT 59.111 55.000 0.00 0.00 0.00 3.16
273 274 1.178276 AGTAGCCTCCACGTCTCAAG 58.822 55.000 0.00 0.00 0.00 3.02
274 275 1.272490 CAAGTAGCCTCCACGTCTCAA 59.728 52.381 0.00 0.00 0.00 3.02
275 276 0.888619 CAAGTAGCCTCCACGTCTCA 59.111 55.000 0.00 0.00 0.00 3.27
276 277 1.133407 CTCAAGTAGCCTCCACGTCTC 59.867 57.143 0.00 0.00 0.00 3.36
277 278 1.178276 CTCAAGTAGCCTCCACGTCT 58.822 55.000 0.00 0.00 0.00 4.18
278 279 1.135344 GTCTCAAGTAGCCTCCACGTC 60.135 57.143 0.00 0.00 0.00 4.34
279 280 0.889306 GTCTCAAGTAGCCTCCACGT 59.111 55.000 0.00 0.00 0.00 4.49
280 281 0.179161 CGTCTCAAGTAGCCTCCACG 60.179 60.000 0.00 0.00 0.00 4.94
281 282 0.889306 ACGTCTCAAGTAGCCTCCAC 59.111 55.000 0.00 0.00 0.00 4.02
282 283 0.888619 CACGTCTCAAGTAGCCTCCA 59.111 55.000 0.00 0.00 0.00 3.86
283 284 0.173708 CCACGTCTCAAGTAGCCTCC 59.826 60.000 0.00 0.00 0.00 4.30
284 285 1.133407 CTCCACGTCTCAAGTAGCCTC 59.867 57.143 0.00 0.00 0.00 4.70
296 297 0.036388 TCTGCCATTTCCTCCACGTC 60.036 55.000 0.00 0.00 0.00 4.34
299 300 2.353109 GCTTTTCTGCCATTTCCTCCAC 60.353 50.000 0.00 0.00 0.00 4.02
430 446 6.183360 TGCAACACTAACACAAACATGTACAT 60.183 34.615 1.41 1.41 30.75 2.29
435 451 4.026640 GCTTGCAACACTAACACAAACATG 60.027 41.667 0.00 0.00 0.00 3.21
441 457 2.479389 GCTTGCTTGCAACACTAACACA 60.479 45.455 3.70 0.00 0.00 3.72
452 468 2.159071 ACAATGTTCAAGCTTGCTTGCA 60.159 40.909 25.33 19.60 34.56 4.08
460 476 2.153645 TCGCATGACAATGTTCAAGCT 58.846 42.857 0.00 0.00 37.93 3.74
468 484 1.791555 GCTCCGTTTCGCATGACAATG 60.792 52.381 0.00 0.00 36.82 2.82
472 488 1.291877 ACTGCTCCGTTTCGCATGAC 61.292 55.000 0.00 0.00 35.32 3.06
479 495 2.716398 GAAACAACACTGCTCCGTTTC 58.284 47.619 0.00 0.00 38.83 2.78
505 521 4.627467 TCACACCCAAATTTGTTGTTTTCG 59.373 37.500 16.73 7.79 0.00 3.46
511 527 6.434018 AAAATGTCACACCCAAATTTGTTG 57.566 33.333 16.73 14.66 0.00 3.33
512 528 6.765512 CCTAAAATGTCACACCCAAATTTGTT 59.234 34.615 16.73 0.71 0.00 2.83
544 560 7.116233 TCGTCGCAGTATATTGTTACTACGATA 59.884 37.037 9.40 0.00 45.00 2.92
545 561 6.073602 TCGTCGCAGTATATTGTTACTACGAT 60.074 38.462 9.40 0.00 45.00 3.73
547 563 5.434706 TCGTCGCAGTATATTGTTACTACG 58.565 41.667 0.00 0.00 39.32 3.51
548 564 5.339085 GCTCGTCGCAGTATATTGTTACTAC 59.661 44.000 0.00 0.00 38.92 2.73
550 566 4.288531 GCTCGTCGCAGTATATTGTTACT 58.711 43.478 0.00 0.00 38.92 2.24
551 567 3.117507 CGCTCGTCGCAGTATATTGTTAC 59.882 47.826 0.00 0.00 39.08 2.50
554 570 1.599667 CCGCTCGTCGCAGTATATTGT 60.600 52.381 0.00 0.00 39.08 2.71
556 572 0.039437 CCCGCTCGTCGCAGTATATT 60.039 55.000 0.00 0.00 39.08 1.28
557 573 1.170919 ACCCGCTCGTCGCAGTATAT 61.171 55.000 0.00 0.00 39.08 0.86
559 575 3.122250 GACCCGCTCGTCGCAGTAT 62.122 63.158 0.00 0.00 39.08 2.12
568 1120 4.796231 CCTTCCGTGACCCGCTCG 62.796 72.222 0.00 0.00 34.38 5.03
577 1129 0.250124 TGTTACTGCACCCTTCCGTG 60.250 55.000 0.00 0.00 36.80 4.94
580 1132 5.448632 CGAAATATTGTTACTGCACCCTTCC 60.449 44.000 0.00 0.00 0.00 3.46
582 1134 5.007682 ACGAAATATTGTTACTGCACCCTT 58.992 37.500 0.00 0.00 0.00 3.95
584 1136 4.957759 ACGAAATATTGTTACTGCACCC 57.042 40.909 0.00 0.00 0.00 4.61
585 1137 5.499047 GCTACGAAATATTGTTACTGCACC 58.501 41.667 0.00 0.00 0.00 5.01
586 1138 5.499047 GGCTACGAAATATTGTTACTGCAC 58.501 41.667 0.00 0.00 0.00 4.57
609 1161 3.804325 CCACTTGATTGATGGTAGCTACG 59.196 47.826 17.48 2.47 0.00 3.51
614 1166 3.003394 TGGCCACTTGATTGATGGTAG 57.997 47.619 0.00 0.00 35.79 3.18
649 1204 2.495939 GATGCTTAGACGCAACAAACG 58.504 47.619 0.00 0.00 44.06 3.60
669 1232 3.119463 GCGATCGAAAACAACATTTGTGG 59.881 43.478 21.57 0.00 44.59 4.17
746 1309 3.416674 CGTGCGTACGTACAGACATTATC 59.583 47.826 30.92 5.62 44.99 1.75
799 1362 1.885157 CCAGCGACCATGTGCATTT 59.115 52.632 0.00 0.00 0.00 2.32
800 1363 2.703798 GCCAGCGACCATGTGCATT 61.704 57.895 0.00 0.00 0.00 3.56
830 1394 1.218230 GAATCTGCTCCATCGGCGAC 61.218 60.000 13.76 0.00 0.00 5.19
865 1429 1.208259 TCGATTCGATTGGATGCACG 58.792 50.000 4.29 0.00 0.00 5.34
959 1562 7.182760 TCCTGTCCCTCTTTATATGATACGAT 58.817 38.462 0.00 0.00 0.00 3.73
998 1602 2.063979 TCCGGCCGGATTGAGATGT 61.064 57.895 42.66 0.00 39.76 3.06
1014 1618 1.724429 CTGCTGCTCTCTGAAAGTCC 58.276 55.000 0.00 0.00 33.76 3.85
1063 1693 1.541672 GAGGAGGAGGAGGAGGAGG 59.458 68.421 0.00 0.00 0.00 4.30
1064 1694 1.150536 CGAGGAGGAGGAGGAGGAG 59.849 68.421 0.00 0.00 0.00 3.69
1065 1695 1.619975 ACGAGGAGGAGGAGGAGGA 60.620 63.158 0.00 0.00 0.00 3.71
1082 1712 2.429351 CGAGCTGCGACGACAAGAC 61.429 63.158 14.67 0.00 44.57 3.01
1253 1883 7.280205 ACTCGTTGATTAATTAACCATGAGGAC 59.720 37.037 19.14 4.90 38.69 3.85
1255 1885 7.553881 ACTCGTTGATTAATTAACCATGAGG 57.446 36.000 19.14 8.33 42.21 3.86
1278 1929 4.130281 GCCTGCACGTACGCGAAC 62.130 66.667 15.93 2.69 42.00 3.95
1317 1968 0.753111 GCCCGCCCTTCTTCATGATT 60.753 55.000 0.00 0.00 0.00 2.57
1426 2077 2.879462 GTAGACGTCGCCGCCTTG 60.879 66.667 10.46 0.00 37.70 3.61
1503 2154 2.811317 GACTTGTCGCCGAGCAGG 60.811 66.667 0.00 0.00 44.97 4.85
1625 2276 4.094830 TGGTGATGGAGATGGAATGATG 57.905 45.455 0.00 0.00 0.00 3.07
1637 2288 4.875536 CGTGTAAAGATTGATGGTGATGGA 59.124 41.667 0.00 0.00 0.00 3.41
1643 2294 4.690748 CACACTCGTGTAAAGATTGATGGT 59.309 41.667 1.90 0.00 42.83 3.55
1658 2309 4.083003 TGCAAGAAAAGAAAACACACTCGT 60.083 37.500 0.00 0.00 0.00 4.18
1668 2319 2.955660 ACCCACGATGCAAGAAAAGAAA 59.044 40.909 0.00 0.00 0.00 2.52
1818 2469 0.684805 AGGCCTCCAGGTAGAAGACG 60.685 60.000 0.00 0.00 37.57 4.18
2052 2703 1.138883 CCGCTCGTACTGCAGCTTA 59.861 57.895 15.27 0.00 33.09 3.09
2057 2708 2.986979 TGACCCGCTCGTACTGCA 60.987 61.111 8.14 0.00 0.00 4.41
2164 2815 0.743345 GGGTTGGTGCCGATGTAGAC 60.743 60.000 0.00 0.00 0.00 2.59
2181 2832 4.025401 GCGTTGTCGTTGGCAGGG 62.025 66.667 0.00 0.00 39.49 4.45
2242 2899 2.047179 GTCCCGCTGGTTCACTCC 60.047 66.667 0.00 0.00 0.00 3.85
2737 3394 4.154015 TGTTGTGCAGCATGTAGTATTCAC 59.846 41.667 0.00 0.00 39.31 3.18
2738 3395 4.322567 TGTTGTGCAGCATGTAGTATTCA 58.677 39.130 0.00 0.00 39.31 2.57
2739 3396 4.944962 TGTTGTGCAGCATGTAGTATTC 57.055 40.909 0.00 0.00 39.31 1.75
2740 3397 4.761739 ACTTGTTGTGCAGCATGTAGTATT 59.238 37.500 0.00 0.00 39.31 1.89
2741 3398 4.326826 ACTTGTTGTGCAGCATGTAGTAT 58.673 39.130 0.00 0.00 39.31 2.12
2744 3401 3.423515 CGTACTTGTTGTGCAGCATGTAG 60.424 47.826 0.00 0.00 39.31 2.74
2758 3415 7.843490 ATATTTACAGCAATCACGTACTTGT 57.157 32.000 10.04 2.94 0.00 3.16
2843 3511 1.073722 CATGTGAGCCACCCACACT 59.926 57.895 0.00 0.00 45.87 3.55
2871 3539 5.055880 CGATAGAGGCTGTGCGAAAACAG 62.056 52.174 0.00 8.49 44.80 3.16
2900 3568 3.138304 TCGAAGACAAACATCCAACCAG 58.862 45.455 0.00 0.00 0.00 4.00
2906 3574 5.179368 TCAACTTCATCGAAGACAAACATCC 59.821 40.000 10.58 0.00 41.71 3.51
2928 3596 0.387929 ACTCCGAGCAAACGACTTCA 59.612 50.000 0.00 0.00 35.09 3.02
2930 3598 1.949465 AAACTCCGAGCAAACGACTT 58.051 45.000 0.00 0.00 35.09 3.01
2973 3641 9.265901 CTTATATCATCGTCAACCATTTCTTCT 57.734 33.333 0.00 0.00 0.00 2.85
2975 3643 9.265901 CTCTTATATCATCGTCAACCATTTCTT 57.734 33.333 0.00 0.00 0.00 2.52
3064 3732 0.099791 AAAACCGTCACAAACTGCCG 59.900 50.000 0.00 0.00 0.00 5.69
3107 3775 5.242434 TGCCTGAAACTCTAAATCGCTTTA 58.758 37.500 0.00 0.00 0.00 1.85
3110 3778 3.334583 TGCCTGAAACTCTAAATCGCT 57.665 42.857 0.00 0.00 0.00 4.93
3237 3905 0.546122 TGCAAACCGCCTATCCATCT 59.454 50.000 0.00 0.00 41.33 2.90
3241 3909 1.961793 TATGTGCAAACCGCCTATCC 58.038 50.000 0.00 0.00 41.33 2.59
3245 3913 1.616159 AAGTTATGTGCAAACCGCCT 58.384 45.000 0.00 0.00 41.33 5.52
3381 4051 8.833231 TCTCCTCTTATTTAATTATGCCTTCG 57.167 34.615 0.00 0.00 0.00 3.79
3412 4097 2.211353 TTGTGGGCGCTTTGTAAAAC 57.789 45.000 7.64 0.00 0.00 2.43
3424 4109 0.037139 TCATGCAATGCTTTGTGGGC 60.037 50.000 6.82 0.45 46.21 5.36
3434 4119 1.586578 GCGAGCAATTGTCATGCAATG 59.413 47.619 13.67 10.07 46.29 2.82
3436 4121 0.109179 GGCGAGCAATTGTCATGCAA 60.109 50.000 7.40 5.27 46.22 4.08
3437 4122 1.507630 GGCGAGCAATTGTCATGCA 59.492 52.632 7.40 0.00 46.22 3.96
3449 4134 4.381411 AGAGTCTATTATTTTGGGCGAGC 58.619 43.478 0.00 0.00 0.00 5.03
3521 4206 5.048504 CGCGTCCCAACTATACTCCTTAATA 60.049 44.000 0.00 0.00 0.00 0.98
3571 4256 8.984891 TTAAAATGTGCTTTAGACAATGGATG 57.015 30.769 0.00 0.00 0.00 3.51
3573 4258 9.823647 TTTTTAAAATGTGCTTTAGACAATGGA 57.176 25.926 0.55 0.00 0.00 3.41
3603 4289 4.025563 CGGGGTTTTTGTTCCGAATTTTTC 60.026 41.667 0.00 0.00 44.69 2.29
3616 4302 2.486592 GGATATATCCGCGGGGTTTTTG 59.513 50.000 27.83 0.00 37.19 2.44
3630 4316 6.544928 TGCACATAGAATGTCCGGATATAT 57.455 37.500 14.71 8.90 42.70 0.86
3651 5284 1.130955 CACCGAAACTTTGTGCATGC 58.869 50.000 11.82 11.82 0.00 4.06
3719 6360 3.506810 CACAAAGTTTTCGGTGAAAGCA 58.493 40.909 8.48 0.00 35.69 3.91
3720 6361 2.281498 GCACAAAGTTTTCGGTGAAAGC 59.719 45.455 8.35 0.00 32.93 3.51
3721 6362 3.303229 GTGCACAAAGTTTTCGGTGAAAG 59.697 43.478 13.17 0.00 32.93 2.62
3744 6386 7.095774 GCGTTTATATCCGAACATTCTATGTGT 60.096 37.037 0.00 0.00 44.07 3.72
3756 6398 3.389925 AATCCCGCGTTTATATCCGAA 57.610 42.857 4.92 0.00 0.00 4.30
3757 6399 3.389925 AAATCCCGCGTTTATATCCGA 57.610 42.857 4.92 0.00 0.00 4.55
3766 6408 1.409427 TCCAAACAAAAATCCCGCGTT 59.591 42.857 4.92 0.00 0.00 4.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.