Multiple sequence alignment - TraesCS5A01G228800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G228800 chr5A 100.000 2683 0 0 1 2683 444842083 444844765 0.000000e+00 4955
1 TraesCS5A01G228800 chr5D 88.326 2193 122 57 274 2433 346890054 346887963 0.000000e+00 2508
2 TraesCS5A01G228800 chr5D 96.850 254 8 0 2430 2683 346886745 346886492 2.470000e-115 425
3 TraesCS5A01G228800 chr5D 87.427 342 39 3 155 494 292817354 292817015 9.010000e-105 390
4 TraesCS5A01G228800 chr5D 93.590 156 10 0 1 156 368744093 368743938 1.610000e-57 233
5 TraesCS5A01G228800 chr5D 93.506 154 10 0 3 156 444909068 444908915 2.080000e-56 230
6 TraesCS5A01G228800 chr5B 92.215 912 46 18 577 1481 404072764 404073657 0.000000e+00 1267
7 TraesCS5A01G228800 chr5B 89.659 938 41 22 1522 2416 404073666 404074590 0.000000e+00 1144
8 TraesCS5A01G228800 chr5B 93.333 210 6 1 2482 2683 404078013 404078222 1.210000e-78 303
9 TraesCS5A01G228800 chr3B 85.400 500 68 4 1 499 533574348 533574843 5.120000e-142 514
10 TraesCS5A01G228800 chr7D 88.529 340 39 0 155 494 521714000 521713661 1.920000e-111 412
11 TraesCS5A01G228800 chr7D 87.059 340 43 1 155 494 464138899 464138561 1.510000e-102 383
12 TraesCS5A01G228800 chr1A 88.012 342 37 1 155 496 555291060 555291397 4.160000e-108 401
13 TraesCS5A01G228800 chr3A 87.353 340 43 0 155 494 107022164 107022503 9.010000e-105 390
14 TraesCS5A01G228800 chr1D 87.537 337 42 0 161 497 33841817 33841481 9.010000e-105 390
15 TraesCS5A01G228800 chr3D 87.390 341 39 3 155 494 310694625 310694288 3.240000e-104 388
16 TraesCS5A01G228800 chr4D 86.957 345 43 2 155 498 116154383 116154040 1.160000e-103 387
17 TraesCS5A01G228800 chr6D 93.590 156 10 0 1 156 34320128 34320283 1.610000e-57 233
18 TraesCS5A01G228800 chr6D 92.949 156 11 0 1 156 266767314 266767469 7.470000e-56 228
19 TraesCS5A01G228800 chr2D 93.590 156 10 0 1 156 150375913 150376068 1.610000e-57 233
20 TraesCS5A01G228800 chr6B 94.040 151 9 0 1 151 579999300 579999450 2.080000e-56 230
21 TraesCS5A01G228800 chr4B 92.949 156 11 0 1 156 501468838 501468993 7.470000e-56 228
22 TraesCS5A01G228800 chr2B 92.903 155 11 0 2 156 385174376 385174530 2.690000e-55 226


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G228800 chr5A 444842083 444844765 2682 False 4955.000000 4955 100.000000 1 2683 1 chr5A.!!$F1 2682
1 TraesCS5A01G228800 chr5D 346886492 346890054 3562 True 1466.500000 2508 92.588000 274 2683 2 chr5D.!!$R4 2409
2 TraesCS5A01G228800 chr5B 404072764 404078222 5458 False 904.666667 1267 91.735667 577 2683 3 chr5B.!!$F1 2106

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
102 103 0.039035 GGTGTAGCCCAAACCCATGA 59.961 55.0 0.0 0.0 0.0 3.07 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1767 1811 0.253894 GGTACCAAGGTTACCCGCAT 59.746 55.0 7.15 0.0 35.12 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.395190 TGATGTGGGAATCAGAAACTTTATG 57.605 36.000 0.00 0.00 32.75 1.90
25 26 6.377996 TGATGTGGGAATCAGAAACTTTATGG 59.622 38.462 0.00 0.00 32.75 2.74
26 27 4.462483 TGTGGGAATCAGAAACTTTATGGC 59.538 41.667 0.00 0.00 0.00 4.40
27 28 4.462483 GTGGGAATCAGAAACTTTATGGCA 59.538 41.667 0.00 0.00 0.00 4.92
28 29 4.706476 TGGGAATCAGAAACTTTATGGCAG 59.294 41.667 0.00 0.00 0.00 4.85
29 30 4.440663 GGGAATCAGAAACTTTATGGCAGC 60.441 45.833 0.00 0.00 0.00 5.25
30 31 4.400567 GGAATCAGAAACTTTATGGCAGCT 59.599 41.667 0.00 0.00 0.00 4.24
31 32 4.978083 ATCAGAAACTTTATGGCAGCTG 57.022 40.909 10.11 10.11 0.00 4.24
32 33 4.019792 TCAGAAACTTTATGGCAGCTGA 57.980 40.909 20.43 0.00 0.00 4.26
33 34 4.592942 TCAGAAACTTTATGGCAGCTGAT 58.407 39.130 20.43 5.40 0.00 2.90
34 35 4.397103 TCAGAAACTTTATGGCAGCTGATG 59.603 41.667 20.43 0.48 0.00 3.07
35 36 4.397103 CAGAAACTTTATGGCAGCTGATGA 59.603 41.667 20.43 0.00 0.00 2.92
36 37 4.397417 AGAAACTTTATGGCAGCTGATGAC 59.603 41.667 20.43 4.47 37.50 3.06
41 42 3.656457 TGGCAGCTGATGACATGTT 57.344 47.368 20.43 0.00 44.15 2.71
42 43 1.170442 TGGCAGCTGATGACATGTTG 58.830 50.000 20.43 0.00 44.15 3.33
43 44 1.171308 GGCAGCTGATGACATGTTGT 58.829 50.000 20.43 0.00 36.67 3.32
44 45 1.135489 GGCAGCTGATGACATGTTGTG 60.135 52.381 20.43 0.00 36.67 3.33
45 46 1.538512 GCAGCTGATGACATGTTGTGT 59.461 47.619 20.43 0.00 45.83 3.72
46 47 2.030540 GCAGCTGATGACATGTTGTGTT 60.031 45.455 20.43 0.00 42.36 3.32
47 48 3.189080 GCAGCTGATGACATGTTGTGTTA 59.811 43.478 20.43 0.00 42.36 2.41
48 49 4.142534 GCAGCTGATGACATGTTGTGTTAT 60.143 41.667 20.43 0.00 42.36 1.89
49 50 5.620654 GCAGCTGATGACATGTTGTGTTATT 60.621 40.000 20.43 0.00 42.36 1.40
50 51 6.025896 CAGCTGATGACATGTTGTGTTATTC 58.974 40.000 8.42 0.00 42.36 1.75
51 52 5.942236 AGCTGATGACATGTTGTGTTATTCT 59.058 36.000 0.00 0.00 42.36 2.40
52 53 6.025896 GCTGATGACATGTTGTGTTATTCTG 58.974 40.000 0.00 0.00 42.36 3.02
53 54 5.941733 TGATGACATGTTGTGTTATTCTGC 58.058 37.500 0.00 0.00 42.36 4.26
54 55 5.472820 TGATGACATGTTGTGTTATTCTGCA 59.527 36.000 0.00 0.00 42.36 4.41
55 56 5.963176 TGACATGTTGTGTTATTCTGCAT 57.037 34.783 0.00 0.00 42.36 3.96
56 57 7.336427 TGATGACATGTTGTGTTATTCTGCATA 59.664 33.333 0.00 0.00 42.36 3.14
57 58 7.446001 TGACATGTTGTGTTATTCTGCATAA 57.554 32.000 0.00 0.00 42.36 1.90
58 59 8.054152 TGACATGTTGTGTTATTCTGCATAAT 57.946 30.769 0.00 2.62 42.36 1.28
59 60 9.171877 TGACATGTTGTGTTATTCTGCATAATA 57.828 29.630 0.00 0.64 42.36 0.98
61 62 9.955208 ACATGTTGTGTTATTCTGCATAATATG 57.045 29.630 5.47 0.00 38.01 1.78
68 69 9.533983 GTGTTATTCTGCATAATATGATTGTCG 57.466 33.333 4.14 0.00 29.70 4.35
69 70 9.487790 TGTTATTCTGCATAATATGATTGTCGA 57.512 29.630 4.14 0.00 29.70 4.20
72 73 8.837788 ATTCTGCATAATATGATTGTCGAAGA 57.162 30.769 4.14 0.00 0.00 2.87
73 74 8.837788 TTCTGCATAATATGATTGTCGAAGAT 57.162 30.769 4.14 0.00 40.67 2.40
74 75 8.248117 TCTGCATAATATGATTGTCGAAGATG 57.752 34.615 4.14 0.00 40.67 2.90
75 76 7.332678 TCTGCATAATATGATTGTCGAAGATGG 59.667 37.037 4.14 0.00 40.67 3.51
76 77 6.372381 TGCATAATATGATTGTCGAAGATGGG 59.628 38.462 4.14 0.00 40.67 4.00
77 78 6.183360 GCATAATATGATTGTCGAAGATGGGG 60.183 42.308 4.14 0.00 40.67 4.96
78 79 2.645838 ATGATTGTCGAAGATGGGGG 57.354 50.000 0.00 0.00 40.67 5.40
79 80 1.285280 TGATTGTCGAAGATGGGGGT 58.715 50.000 0.00 0.00 40.67 4.95
80 81 2.473070 TGATTGTCGAAGATGGGGGTA 58.527 47.619 0.00 0.00 40.67 3.69
81 82 2.841266 TGATTGTCGAAGATGGGGGTAA 59.159 45.455 0.00 0.00 40.67 2.85
82 83 3.458118 TGATTGTCGAAGATGGGGGTAAT 59.542 43.478 0.00 0.00 40.67 1.89
83 84 3.275617 TTGTCGAAGATGGGGGTAATG 57.724 47.619 0.00 0.00 40.67 1.90
84 85 1.488812 TGTCGAAGATGGGGGTAATGG 59.511 52.381 0.00 0.00 40.67 3.16
85 86 1.489230 GTCGAAGATGGGGGTAATGGT 59.511 52.381 0.00 0.00 40.67 3.55
86 87 1.488812 TCGAAGATGGGGGTAATGGTG 59.511 52.381 0.00 0.00 0.00 4.17
87 88 1.211949 CGAAGATGGGGGTAATGGTGT 59.788 52.381 0.00 0.00 0.00 4.16
88 89 2.436542 CGAAGATGGGGGTAATGGTGTA 59.563 50.000 0.00 0.00 0.00 2.90
89 90 3.494398 CGAAGATGGGGGTAATGGTGTAG 60.494 52.174 0.00 0.00 0.00 2.74
90 91 1.774856 AGATGGGGGTAATGGTGTAGC 59.225 52.381 0.00 0.00 0.00 3.58
91 92 0.850784 ATGGGGGTAATGGTGTAGCC 59.149 55.000 0.00 0.00 40.32 3.93
95 96 2.517998 GGGTAATGGTGTAGCCCAAA 57.482 50.000 0.00 0.00 38.20 3.28
96 97 2.097036 GGGTAATGGTGTAGCCCAAAC 58.903 52.381 0.00 0.00 38.20 2.93
97 98 2.097036 GGTAATGGTGTAGCCCAAACC 58.903 52.381 0.00 0.00 38.20 3.27
98 99 2.097036 GTAATGGTGTAGCCCAAACCC 58.903 52.381 0.00 0.00 38.20 4.11
99 100 0.485099 AATGGTGTAGCCCAAACCCA 59.515 50.000 0.00 0.00 38.20 4.51
100 101 0.709992 ATGGTGTAGCCCAAACCCAT 59.290 50.000 0.00 0.00 38.20 4.00
101 102 0.251564 TGGTGTAGCCCAAACCCATG 60.252 55.000 0.00 0.00 36.04 3.66
102 103 0.039035 GGTGTAGCCCAAACCCATGA 59.961 55.000 0.00 0.00 0.00 3.07
103 104 1.341976 GGTGTAGCCCAAACCCATGAT 60.342 52.381 0.00 0.00 0.00 2.45
104 105 2.456577 GTGTAGCCCAAACCCATGATT 58.543 47.619 0.00 0.00 0.00 2.57
105 106 2.831526 GTGTAGCCCAAACCCATGATTT 59.168 45.455 0.00 0.00 0.00 2.17
106 107 3.260632 GTGTAGCCCAAACCCATGATTTT 59.739 43.478 0.00 0.00 0.00 1.82
107 108 3.260380 TGTAGCCCAAACCCATGATTTTG 59.740 43.478 10.49 10.49 33.30 2.44
108 109 2.618794 AGCCCAAACCCATGATTTTGA 58.381 42.857 16.40 0.00 35.13 2.69
109 110 2.978278 AGCCCAAACCCATGATTTTGAA 59.022 40.909 16.40 0.00 35.13 2.69
110 111 3.008266 AGCCCAAACCCATGATTTTGAAG 59.992 43.478 16.40 10.47 35.13 3.02
111 112 3.337358 CCCAAACCCATGATTTTGAAGC 58.663 45.455 16.40 0.00 35.13 3.86
112 113 3.244491 CCCAAACCCATGATTTTGAAGCA 60.244 43.478 16.40 0.00 35.13 3.91
113 114 3.747529 CCAAACCCATGATTTTGAAGCAC 59.252 43.478 16.40 0.00 35.13 4.40
114 115 3.683365 AACCCATGATTTTGAAGCACC 57.317 42.857 0.00 0.00 0.00 5.01
115 116 1.901833 ACCCATGATTTTGAAGCACCC 59.098 47.619 0.00 0.00 0.00 4.61
116 117 1.901159 CCCATGATTTTGAAGCACCCA 59.099 47.619 0.00 0.00 0.00 4.51
117 118 2.093869 CCCATGATTTTGAAGCACCCAG 60.094 50.000 0.00 0.00 0.00 4.45
118 119 2.827322 CCATGATTTTGAAGCACCCAGA 59.173 45.455 0.00 0.00 0.00 3.86
119 120 3.258872 CCATGATTTTGAAGCACCCAGAA 59.741 43.478 0.00 0.00 0.00 3.02
120 121 4.262549 CCATGATTTTGAAGCACCCAGAAA 60.263 41.667 0.00 0.00 0.00 2.52
121 122 5.299148 CATGATTTTGAAGCACCCAGAAAA 58.701 37.500 0.00 0.00 0.00 2.29
122 123 4.692228 TGATTTTGAAGCACCCAGAAAAC 58.308 39.130 0.00 0.00 0.00 2.43
123 124 4.161189 TGATTTTGAAGCACCCAGAAAACA 59.839 37.500 0.00 0.00 0.00 2.83
124 125 4.543590 TTTTGAAGCACCCAGAAAACAA 57.456 36.364 0.00 0.00 0.00 2.83
125 126 3.799281 TTGAAGCACCCAGAAAACAAG 57.201 42.857 0.00 0.00 0.00 3.16
126 127 2.733956 TGAAGCACCCAGAAAACAAGT 58.266 42.857 0.00 0.00 0.00 3.16
127 128 3.096092 TGAAGCACCCAGAAAACAAGTT 58.904 40.909 0.00 0.00 0.00 2.66
128 129 3.119173 TGAAGCACCCAGAAAACAAGTTG 60.119 43.478 0.00 0.00 0.00 3.16
129 130 2.733956 AGCACCCAGAAAACAAGTTGA 58.266 42.857 10.54 0.00 0.00 3.18
130 131 3.096092 AGCACCCAGAAAACAAGTTGAA 58.904 40.909 10.54 0.00 0.00 2.69
131 132 3.513515 AGCACCCAGAAAACAAGTTGAAA 59.486 39.130 10.54 0.00 0.00 2.69
132 133 4.162131 AGCACCCAGAAAACAAGTTGAAAT 59.838 37.500 10.54 0.00 0.00 2.17
133 134 4.507756 GCACCCAGAAAACAAGTTGAAATC 59.492 41.667 10.54 4.32 0.00 2.17
134 135 5.049828 CACCCAGAAAACAAGTTGAAATCC 58.950 41.667 10.54 0.00 0.00 3.01
135 136 4.100963 ACCCAGAAAACAAGTTGAAATCCC 59.899 41.667 10.54 0.00 0.00 3.85
136 137 4.298332 CCAGAAAACAAGTTGAAATCCCG 58.702 43.478 10.54 0.00 0.00 5.14
137 138 4.037446 CCAGAAAACAAGTTGAAATCCCGA 59.963 41.667 10.54 0.00 0.00 5.14
138 139 5.451242 CCAGAAAACAAGTTGAAATCCCGAA 60.451 40.000 10.54 0.00 0.00 4.30
139 140 6.039616 CAGAAAACAAGTTGAAATCCCGAAA 58.960 36.000 10.54 0.00 0.00 3.46
140 141 6.198966 CAGAAAACAAGTTGAAATCCCGAAAG 59.801 38.462 10.54 0.00 0.00 2.62
141 142 5.845391 AAACAAGTTGAAATCCCGAAAGA 57.155 34.783 10.54 0.00 0.00 2.52
142 143 6.405278 AAACAAGTTGAAATCCCGAAAGAT 57.595 33.333 10.54 0.00 0.00 2.40
143 144 5.629079 ACAAGTTGAAATCCCGAAAGATC 57.371 39.130 10.54 0.00 0.00 2.75
144 145 5.070001 ACAAGTTGAAATCCCGAAAGATCA 58.930 37.500 10.54 0.00 0.00 2.92
145 146 5.534654 ACAAGTTGAAATCCCGAAAGATCAA 59.465 36.000 10.54 0.00 0.00 2.57
146 147 5.886960 AGTTGAAATCCCGAAAGATCAAG 57.113 39.130 0.00 0.00 0.00 3.02
147 148 5.560724 AGTTGAAATCCCGAAAGATCAAGA 58.439 37.500 0.00 0.00 0.00 3.02
148 149 6.183347 AGTTGAAATCCCGAAAGATCAAGAT 58.817 36.000 0.00 0.00 0.00 2.40
149 150 6.094603 AGTTGAAATCCCGAAAGATCAAGATG 59.905 38.462 0.00 0.00 0.00 2.90
150 151 4.336433 TGAAATCCCGAAAGATCAAGATGC 59.664 41.667 0.00 0.00 0.00 3.91
151 152 1.939974 TCCCGAAAGATCAAGATGCG 58.060 50.000 0.00 0.00 0.00 4.73
152 153 0.940126 CCCGAAAGATCAAGATGCGG 59.060 55.000 0.00 0.00 37.20 5.69
153 154 0.305922 CCGAAAGATCAAGATGCGGC 59.694 55.000 0.00 0.00 0.00 6.53
154 155 1.293924 CGAAAGATCAAGATGCGGCT 58.706 50.000 0.00 0.00 0.00 5.52
155 156 1.260033 CGAAAGATCAAGATGCGGCTC 59.740 52.381 0.00 0.00 0.00 4.70
156 157 2.559440 GAAAGATCAAGATGCGGCTCT 58.441 47.619 0.00 0.00 0.00 4.09
157 158 2.706339 AAGATCAAGATGCGGCTCTT 57.294 45.000 0.00 5.27 35.88 2.85
158 159 2.237393 AGATCAAGATGCGGCTCTTC 57.763 50.000 0.00 0.00 33.18 2.87
159 160 0.857935 GATCAAGATGCGGCTCTTCG 59.142 55.000 0.00 4.10 33.18 3.79
160 161 0.461548 ATCAAGATGCGGCTCTTCGA 59.538 50.000 0.00 8.53 33.18 3.71
161 162 0.246360 TCAAGATGCGGCTCTTCGAA 59.754 50.000 0.00 0.00 33.18 3.71
162 163 1.078709 CAAGATGCGGCTCTTCGAAA 58.921 50.000 0.00 0.00 33.18 3.46
163 164 1.667724 CAAGATGCGGCTCTTCGAAAT 59.332 47.619 0.00 0.00 33.18 2.17
164 165 1.576356 AGATGCGGCTCTTCGAAATC 58.424 50.000 0.00 0.00 0.00 2.17
165 166 1.134699 AGATGCGGCTCTTCGAAATCA 60.135 47.619 0.00 0.00 31.57 2.57
166 167 1.260033 GATGCGGCTCTTCGAAATCAG 59.740 52.381 0.00 0.00 0.00 2.90
167 168 1.349973 GCGGCTCTTCGAAATCAGC 59.650 57.895 12.79 12.79 0.00 4.26
168 169 1.361668 GCGGCTCTTCGAAATCAGCA 61.362 55.000 19.57 0.00 33.22 4.41
169 170 0.649475 CGGCTCTTCGAAATCAGCAG 59.351 55.000 19.57 14.20 33.22 4.24
170 171 1.012841 GGCTCTTCGAAATCAGCAGG 58.987 55.000 19.57 0.00 33.22 4.85
171 172 1.677217 GGCTCTTCGAAATCAGCAGGT 60.677 52.381 19.57 0.00 33.22 4.00
172 173 1.396301 GCTCTTCGAAATCAGCAGGTG 59.604 52.381 15.23 0.00 0.00 4.00
173 174 1.396301 CTCTTCGAAATCAGCAGGTGC 59.604 52.381 0.00 0.00 42.49 5.01
174 175 1.159285 CTTCGAAATCAGCAGGTGCA 58.841 50.000 4.48 0.00 45.16 4.57
175 176 1.741706 CTTCGAAATCAGCAGGTGCAT 59.258 47.619 4.48 0.00 45.16 3.96
176 177 2.689553 TCGAAATCAGCAGGTGCATA 57.310 45.000 4.48 0.00 45.16 3.14
177 178 2.279741 TCGAAATCAGCAGGTGCATAC 58.720 47.619 4.48 0.00 45.16 2.39
178 179 2.093500 TCGAAATCAGCAGGTGCATACT 60.093 45.455 4.48 0.00 45.16 2.12
179 180 2.286294 CGAAATCAGCAGGTGCATACTC 59.714 50.000 4.48 0.00 45.16 2.59
180 181 3.273434 GAAATCAGCAGGTGCATACTCA 58.727 45.455 4.48 0.00 45.16 3.41
181 182 3.572632 AATCAGCAGGTGCATACTCAT 57.427 42.857 4.48 0.00 45.16 2.90
182 183 2.609427 TCAGCAGGTGCATACTCATC 57.391 50.000 4.48 0.00 45.16 2.92
183 184 2.113807 TCAGCAGGTGCATACTCATCT 58.886 47.619 4.48 0.00 45.16 2.90
184 185 3.299503 TCAGCAGGTGCATACTCATCTA 58.700 45.455 4.48 0.00 45.16 1.98
185 186 3.068732 TCAGCAGGTGCATACTCATCTAC 59.931 47.826 4.48 0.00 45.16 2.59
186 187 3.069300 CAGCAGGTGCATACTCATCTACT 59.931 47.826 4.48 0.00 45.16 2.57
187 188 3.320541 AGCAGGTGCATACTCATCTACTC 59.679 47.826 4.48 0.00 45.16 2.59
188 189 3.068732 GCAGGTGCATACTCATCTACTCA 59.931 47.826 0.00 0.00 41.59 3.41
189 190 4.442052 GCAGGTGCATACTCATCTACTCAA 60.442 45.833 0.00 0.00 41.59 3.02
190 191 5.741383 GCAGGTGCATACTCATCTACTCAAT 60.741 44.000 0.00 0.00 41.59 2.57
191 192 5.695363 CAGGTGCATACTCATCTACTCAATG 59.305 44.000 0.00 0.00 0.00 2.82
192 193 5.600069 AGGTGCATACTCATCTACTCAATGA 59.400 40.000 0.00 0.00 0.00 2.57
193 194 6.269538 AGGTGCATACTCATCTACTCAATGAT 59.730 38.462 0.00 0.00 32.91 2.45
194 195 6.589523 GGTGCATACTCATCTACTCAATGATC 59.410 42.308 0.00 0.00 32.91 2.92
195 196 7.377398 GTGCATACTCATCTACTCAATGATCT 58.623 38.462 0.00 0.00 32.91 2.75
196 197 7.871973 GTGCATACTCATCTACTCAATGATCTT 59.128 37.037 0.00 0.00 32.91 2.40
197 198 7.871463 TGCATACTCATCTACTCAATGATCTTG 59.129 37.037 0.00 0.00 32.91 3.02
198 199 7.871973 GCATACTCATCTACTCAATGATCTTGT 59.128 37.037 0.00 0.00 32.91 3.16
199 200 9.194271 CATACTCATCTACTCAATGATCTTGTG 57.806 37.037 0.00 0.47 32.91 3.33
200 201 7.415592 ACTCATCTACTCAATGATCTTGTGA 57.584 36.000 11.41 4.47 32.91 3.58
201 202 7.845037 ACTCATCTACTCAATGATCTTGTGAA 58.155 34.615 11.41 1.91 32.91 3.18
202 203 7.980662 ACTCATCTACTCAATGATCTTGTGAAG 59.019 37.037 11.41 0.00 32.91 3.02
203 204 6.760298 TCATCTACTCAATGATCTTGTGAAGC 59.240 38.462 11.41 0.00 0.00 3.86
204 205 6.041423 TCTACTCAATGATCTTGTGAAGCA 57.959 37.500 11.41 0.00 0.00 3.91
205 206 5.871524 TCTACTCAATGATCTTGTGAAGCAC 59.128 40.000 11.41 0.00 34.56 4.40
206 207 4.392047 ACTCAATGATCTTGTGAAGCACA 58.608 39.130 11.41 0.00 43.02 4.57
207 208 5.008331 ACTCAATGATCTTGTGAAGCACAT 58.992 37.500 0.62 0.00 44.16 3.21
208 209 5.106277 ACTCAATGATCTTGTGAAGCACATG 60.106 40.000 0.62 4.29 44.16 3.21
209 210 4.763279 TCAATGATCTTGTGAAGCACATGT 59.237 37.500 11.56 0.00 44.16 3.21
210 211 4.696899 ATGATCTTGTGAAGCACATGTG 57.303 40.909 21.83 21.83 44.16 3.21
211 212 2.815503 TGATCTTGTGAAGCACATGTGG 59.184 45.455 26.55 9.24 44.16 4.17
212 213 2.636647 TCTTGTGAAGCACATGTGGA 57.363 45.000 26.55 10.20 44.16 4.02
213 214 3.144657 TCTTGTGAAGCACATGTGGAT 57.855 42.857 26.55 4.12 44.16 3.41
214 215 3.076621 TCTTGTGAAGCACATGTGGATC 58.923 45.455 26.55 10.69 44.16 3.36
215 216 1.825090 TGTGAAGCACATGTGGATCC 58.175 50.000 26.55 4.20 39.62 3.36
216 217 1.073603 TGTGAAGCACATGTGGATCCA 59.926 47.619 26.55 11.44 39.62 3.41
217 218 1.470098 GTGAAGCACATGTGGATCCAC 59.530 52.381 33.97 33.97 39.53 4.02
218 219 5.640768 TGTGAAGCACATGTGGATCCACA 62.641 47.826 41.86 41.86 45.36 4.17
227 228 0.532115 GTGGATCCACAATGGCAACC 59.468 55.000 35.21 7.92 45.53 3.77
228 229 0.113972 TGGATCCACAATGGCAACCA 59.886 50.000 11.44 0.00 37.47 3.67
229 230 1.265236 GGATCCACAATGGCAACCAA 58.735 50.000 6.95 0.00 36.95 3.67
230 231 1.205417 GGATCCACAATGGCAACCAAG 59.795 52.381 6.95 0.00 36.95 3.61
231 232 1.205417 GATCCACAATGGCAACCAAGG 59.795 52.381 0.00 0.00 36.95 3.61
232 233 0.187117 TCCACAATGGCAACCAAGGA 59.813 50.000 0.00 0.00 36.95 3.36
233 234 0.604578 CCACAATGGCAACCAAGGAG 59.395 55.000 0.00 0.00 36.95 3.69
234 235 0.604578 CACAATGGCAACCAAGGAGG 59.395 55.000 0.00 0.00 45.67 4.30
235 236 1.187567 ACAATGGCAACCAAGGAGGC 61.188 55.000 0.00 0.00 43.14 4.70
236 237 1.155859 AATGGCAACCAAGGAGGCA 59.844 52.632 12.83 12.83 43.14 4.75
237 238 0.471591 AATGGCAACCAAGGAGGCAA 60.472 50.000 13.98 2.36 43.14 4.52
238 239 0.252375 ATGGCAACCAAGGAGGCAAT 60.252 50.000 13.98 4.33 43.14 3.56
239 240 1.186917 TGGCAACCAAGGAGGCAATG 61.187 55.000 9.30 0.00 43.14 2.82
240 241 1.079612 GCAACCAAGGAGGCAATGC 60.080 57.895 0.00 0.00 43.14 3.56
241 242 1.538687 GCAACCAAGGAGGCAATGCT 61.539 55.000 4.82 0.00 43.14 3.79
242 243 0.971386 CAACCAAGGAGGCAATGCTT 59.029 50.000 4.82 0.00 40.78 3.91
247 248 2.299326 AAGGAGGCAATGCTTGAGTT 57.701 45.000 4.82 0.00 38.30 3.01
248 249 2.299326 AGGAGGCAATGCTTGAGTTT 57.701 45.000 4.82 0.00 0.00 2.66
249 250 1.891150 AGGAGGCAATGCTTGAGTTTG 59.109 47.619 4.82 0.00 0.00 2.93
250 251 1.615392 GGAGGCAATGCTTGAGTTTGT 59.385 47.619 4.82 0.00 0.00 2.83
251 252 2.352127 GGAGGCAATGCTTGAGTTTGTC 60.352 50.000 4.82 0.00 0.00 3.18
252 253 2.294233 GAGGCAATGCTTGAGTTTGTCA 59.706 45.455 4.82 0.00 0.00 3.58
253 254 2.035066 AGGCAATGCTTGAGTTTGTCAC 59.965 45.455 4.82 0.00 33.71 3.67
254 255 2.035066 GGCAATGCTTGAGTTTGTCACT 59.965 45.455 4.82 0.00 39.07 3.41
255 256 3.491447 GGCAATGCTTGAGTTTGTCACTT 60.491 43.478 4.82 0.00 35.01 3.16
256 257 3.732721 GCAATGCTTGAGTTTGTCACTTC 59.267 43.478 0.00 0.00 35.01 3.01
257 258 4.734402 GCAATGCTTGAGTTTGTCACTTCA 60.734 41.667 0.00 0.00 35.01 3.02
258 259 5.342433 CAATGCTTGAGTTTGTCACTTCAA 58.658 37.500 0.00 0.00 35.01 2.69
259 260 5.581126 ATGCTTGAGTTTGTCACTTCAAA 57.419 34.783 0.00 0.00 35.01 2.69
260 261 5.581126 TGCTTGAGTTTGTCACTTCAAAT 57.419 34.783 0.00 0.00 39.09 2.32
261 262 6.691754 TGCTTGAGTTTGTCACTTCAAATA 57.308 33.333 0.00 0.00 39.09 1.40
262 263 7.094508 TGCTTGAGTTTGTCACTTCAAATAA 57.905 32.000 0.00 0.00 39.09 1.40
263 264 7.542890 TGCTTGAGTTTGTCACTTCAAATAAA 58.457 30.769 0.00 0.00 39.09 1.40
264 265 8.196771 TGCTTGAGTTTGTCACTTCAAATAAAT 58.803 29.630 0.00 0.00 39.09 1.40
265 266 9.034544 GCTTGAGTTTGTCACTTCAAATAAATT 57.965 29.630 0.00 0.00 39.09 1.82
300 301 9.565090 ACACTATGTATGCTTGATATCAACAAT 57.435 29.630 14.23 12.38 0.00 2.71
318 319 3.181509 ACAATTGTTGTTTACGTGCGACA 60.182 39.130 4.92 1.84 42.22 4.35
326 327 3.554731 TGTTTACGTGCGACATTGTGTTA 59.445 39.130 0.00 0.00 0.00 2.41
336 337 5.522097 TGCGACATTGTGTTACATAATCGAT 59.478 36.000 17.47 0.00 0.00 3.59
373 374 6.127814 TGCATGAATTTGAGAGTCCAGATTTC 60.128 38.462 0.00 0.00 0.00 2.17
375 376 7.576287 GCATGAATTTGAGAGTCCAGATTTCAA 60.576 37.037 0.00 0.00 0.00 2.69
432 433 3.576356 GATGCATCCACGGGCGTG 61.576 66.667 16.23 0.00 45.02 5.34
471 472 0.334676 ATTTGAGGGGCCGGATTTGA 59.665 50.000 5.05 0.00 0.00 2.69
472 473 0.610785 TTTGAGGGGCCGGATTTGAC 60.611 55.000 5.05 0.00 0.00 3.18
478 479 1.313091 GGGCCGGATTTGACAAGTCC 61.313 60.000 17.56 17.56 0.00 3.85
479 480 0.608035 GGCCGGATTTGACAAGTCCA 60.608 55.000 24.57 0.00 32.23 4.02
481 482 1.882352 GCCGGATTTGACAAGTCCAGT 60.882 52.381 24.57 0.00 32.23 4.00
497 498 4.404073 AGTCCAGTTGTAGATGCTCTAAGG 59.596 45.833 0.00 0.00 29.58 2.69
505 506 6.641169 TGTAGATGCTCTAAGGTCACATAG 57.359 41.667 0.00 0.00 29.58 2.23
506 507 6.365520 TGTAGATGCTCTAAGGTCACATAGA 58.634 40.000 0.00 0.00 29.58 1.98
508 509 6.798427 AGATGCTCTAAGGTCACATAGAAA 57.202 37.500 0.00 0.00 0.00 2.52
513 514 5.625656 GCTCTAAGGTCACATAGAAACAGCT 60.626 44.000 0.00 0.00 0.00 4.24
516 517 7.321153 TCTAAGGTCACATAGAAACAGCTTAC 58.679 38.462 0.00 0.00 0.00 2.34
517 518 5.746990 AGGTCACATAGAAACAGCTTACT 57.253 39.130 0.00 0.00 0.00 2.24
520 521 6.043411 GGTCACATAGAAACAGCTTACTAGG 58.957 44.000 0.00 0.00 0.00 3.02
527 528 9.817809 CATAGAAACAGCTTACTAGGATAACAA 57.182 33.333 0.00 0.00 0.00 2.83
533 534 8.086143 ACAGCTTACTAGGATAACAATAACCA 57.914 34.615 0.00 0.00 0.00 3.67
534 535 7.985752 ACAGCTTACTAGGATAACAATAACCAC 59.014 37.037 0.00 0.00 0.00 4.16
575 576 2.038033 TCGAAAGGAACCAACCTACAGG 59.962 50.000 0.00 0.00 39.62 4.00
607 608 4.877619 TTTGTTGCGACCGCCCCA 62.878 61.111 12.08 5.55 41.09 4.96
727 731 9.606631 AGCAAAAATAAATAAAAGACACCACAA 57.393 25.926 0.00 0.00 0.00 3.33
768 773 2.424601 CCCACGACGACCTTTGTCTATA 59.575 50.000 0.00 0.00 39.47 1.31
774 779 5.154932 CGACGACCTTTGTCTATATCATCC 58.845 45.833 0.00 0.00 39.47 3.51
847 854 3.899700 CCCAAATTAGGCGGGCGC 61.900 66.667 0.00 0.00 41.06 6.53
973 980 2.120718 CTATCCCTCCCCTCCCCG 59.879 72.222 0.00 0.00 0.00 5.73
974 981 3.528428 TATCCCTCCCCTCCCCGG 61.528 72.222 0.00 0.00 0.00 5.73
991 1000 4.256180 GCTCCCCCTGGCCATACG 62.256 72.222 5.51 0.00 0.00 3.06
1001 1010 2.833227 GCCATACGCCCATACCCA 59.167 61.111 0.00 0.00 0.00 4.51
1002 1011 1.149627 GCCATACGCCCATACCCAA 59.850 57.895 0.00 0.00 0.00 4.12
1003 1012 0.889186 GCCATACGCCCATACCCAAG 60.889 60.000 0.00 0.00 0.00 3.61
1004 1013 0.762418 CCATACGCCCATACCCAAGA 59.238 55.000 0.00 0.00 0.00 3.02
1033 1050 2.304180 CACTTCCCATCTCAACTCCACT 59.696 50.000 0.00 0.00 0.00 4.00
1034 1051 2.569404 ACTTCCCATCTCAACTCCACTC 59.431 50.000 0.00 0.00 0.00 3.51
1035 1052 1.573108 TCCCATCTCAACTCCACTCC 58.427 55.000 0.00 0.00 0.00 3.85
1036 1053 1.203300 TCCCATCTCAACTCCACTCCA 60.203 52.381 0.00 0.00 0.00 3.86
1037 1054 1.065854 CCCATCTCAACTCCACTCCAC 60.066 57.143 0.00 0.00 0.00 4.02
1038 1055 1.905215 CCATCTCAACTCCACTCCACT 59.095 52.381 0.00 0.00 0.00 4.00
1039 1056 2.093764 CCATCTCAACTCCACTCCACTC 60.094 54.545 0.00 0.00 0.00 3.51
1040 1057 1.633774 TCTCAACTCCACTCCACTCC 58.366 55.000 0.00 0.00 0.00 3.85
1041 1058 0.244994 CTCAACTCCACTCCACTCCG 59.755 60.000 0.00 0.00 0.00 4.63
1042 1059 1.185618 TCAACTCCACTCCACTCCGG 61.186 60.000 0.00 0.00 0.00 5.14
1082 1099 1.002366 CACTCCAAGATTTCTCGCCG 58.998 55.000 0.00 0.00 0.00 6.46
1135 1152 0.245266 TCTCGCAAGGTACGCATGAA 59.755 50.000 0.00 0.00 38.47 2.57
1190 1207 1.953559 TTCGATGCCAATCAGGTAGC 58.046 50.000 0.00 0.00 40.61 3.58
1207 1227 8.752005 TCAGGTAGCAAAGATTAATTAATGCT 57.248 30.769 21.50 21.50 35.45 3.79
1481 1501 2.512485 TTTGCGTGTAGAGGACGAAA 57.488 45.000 0.00 0.00 39.21 3.46
1483 1503 1.774639 TGCGTGTAGAGGACGAAAAC 58.225 50.000 0.00 0.00 39.21 2.43
1517 1537 0.736672 GAACGAACGGCTCTTCTCCC 60.737 60.000 0.00 0.00 0.00 4.30
1555 1575 6.086222 CGGTAAATCTTTGATGAGTTGGTTG 58.914 40.000 0.00 0.00 0.00 3.77
1572 1592 7.177878 AGTTGGTTGATCTGGAGAATTGTATT 58.822 34.615 0.00 0.00 0.00 1.89
1575 1597 8.737168 TGGTTGATCTGGAGAATTGTATTTAG 57.263 34.615 0.00 0.00 0.00 1.85
1649 1678 1.915489 TGCCATCTGTACAACCCATCT 59.085 47.619 0.00 0.00 0.00 2.90
1659 1692 2.991250 ACAACCCATCTATGTGTGCTC 58.009 47.619 0.00 0.00 0.00 4.26
1668 1701 5.049612 CCATCTATGTGTGCTCTGCAATAAG 60.050 44.000 0.00 0.00 41.47 1.73
1690 1723 4.707934 AGATCATCAACATTGTGCCATTGA 59.292 37.500 0.00 0.00 35.64 2.57
1700 1738 6.394809 ACATTGTGCCATTGATGCATATATG 58.605 36.000 8.45 8.45 41.46 1.78
1707 1745 5.451381 GCCATTGATGCATATATGGTGGATG 60.451 44.000 27.58 11.72 39.75 3.51
1708 1746 5.451381 CCATTGATGCATATATGGTGGATGC 60.451 44.000 22.69 1.14 45.02 3.91
1713 1751 3.019564 GCATATATGGTGGATGCCCTTC 58.980 50.000 14.51 0.00 40.08 3.46
1740 1778 1.180456 TTCTTGCCCAGTGTGCATGG 61.180 55.000 12.38 0.00 38.76 3.66
1757 1801 3.672511 GCATGGCAGTTCAGTTTGATGAG 60.673 47.826 0.00 0.00 0.00 2.90
1767 1811 6.948886 AGTTCAGTTTGATGAGAGGAGTACTA 59.051 38.462 0.00 0.00 0.00 1.82
1771 1815 4.837896 TTGATGAGAGGAGTACTATGCG 57.162 45.455 0.00 0.00 0.00 4.73
1987 2050 5.389859 TCGGTTGGTTTTACGAGAGAATA 57.610 39.130 0.00 0.00 0.00 1.75
2018 2081 2.819608 GCAGTTTTGGCTTCATGAGGTA 59.180 45.455 6.70 0.00 0.00 3.08
2019 2082 3.366374 GCAGTTTTGGCTTCATGAGGTAC 60.366 47.826 6.70 1.06 0.00 3.34
2134 2197 8.258007 TGCTAACATTTGCTCTATGTAGTTACT 58.742 33.333 0.00 0.00 35.26 2.24
2135 2198 9.745880 GCTAACATTTGCTCTATGTAGTTACTA 57.254 33.333 0.00 0.00 35.26 1.82
2196 2267 1.540707 TCGATGCTTCATGCTTGCAAA 59.459 42.857 0.00 0.00 43.37 3.68
2273 2344 5.941733 GCTTTGCCAAAATAAAAATCAGGG 58.058 37.500 0.00 0.00 0.00 4.45
2274 2345 5.619757 GCTTTGCCAAAATAAAAATCAGGGC 60.620 40.000 0.00 0.00 40.51 5.19
2275 2346 4.630644 TGCCAAAATAAAAATCAGGGCA 57.369 36.364 0.00 0.00 46.95 5.36
2276 2347 5.176741 TGCCAAAATAAAAATCAGGGCAT 57.823 34.783 0.00 0.00 44.54 4.40
2277 2348 4.942483 TGCCAAAATAAAAATCAGGGCATG 59.058 37.500 0.00 0.00 44.54 4.06
2278 2349 4.336153 GCCAAAATAAAAATCAGGGCATGG 59.664 41.667 0.00 0.00 39.88 3.66
2279 2350 4.883006 CCAAAATAAAAATCAGGGCATGGG 59.117 41.667 0.00 0.00 0.00 4.00
2280 2351 3.843893 AATAAAAATCAGGGCATGGGC 57.156 42.857 0.00 0.00 40.13 5.36
2281 2352 2.548464 TAAAAATCAGGGCATGGGCT 57.452 45.000 0.00 0.00 40.87 5.19
2282 2353 1.660242 AAAAATCAGGGCATGGGCTT 58.340 45.000 0.00 0.00 40.87 4.35
2283 2354 1.660242 AAAATCAGGGCATGGGCTTT 58.340 45.000 0.00 0.00 40.87 3.51
2284 2355 0.906775 AAATCAGGGCATGGGCTTTG 59.093 50.000 0.00 0.00 40.87 2.77
2285 2356 1.619807 AATCAGGGCATGGGCTTTGC 61.620 55.000 0.00 4.00 40.87 3.68
2387 2486 4.611310 TCTTGAGTTACGTACAGATCGG 57.389 45.455 0.00 0.00 0.00 4.18
2417 2516 5.220381 GTTTTTGCTTAGTCCCTTAGTTGC 58.780 41.667 0.00 0.00 0.00 4.17
2433 2532 7.711339 CCCTTAGTTGCTTAGTCCTTAACATAG 59.289 40.741 0.00 0.00 0.00 2.23
2436 5670 5.875359 AGTTGCTTAGTCCTTAACATAGCAC 59.125 40.000 0.00 0.00 42.56 4.40
2614 6126 5.272402 AGGGATGGGAGGAAATAAACTTTG 58.728 41.667 0.00 0.00 0.00 2.77
2639 6151 2.027561 ACCCATTAAAGTAGTCGCTGCA 60.028 45.455 0.00 0.00 0.00 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.377996 CCATAAAGTTTCTGATTCCCACATCA 59.622 38.462 2.71 0.00 0.00 3.07
1 2 6.681368 GCCATAAAGTTTCTGATTCCCACATC 60.681 42.308 2.71 0.00 0.00 3.06
2 3 5.127682 GCCATAAAGTTTCTGATTCCCACAT 59.872 40.000 2.71 0.00 0.00 3.21
3 4 4.462483 GCCATAAAGTTTCTGATTCCCACA 59.538 41.667 2.71 0.00 0.00 4.17
4 5 4.462483 TGCCATAAAGTTTCTGATTCCCAC 59.538 41.667 2.71 0.00 0.00 4.61
5 6 4.671831 TGCCATAAAGTTTCTGATTCCCA 58.328 39.130 2.71 0.00 0.00 4.37
6 7 4.440663 GCTGCCATAAAGTTTCTGATTCCC 60.441 45.833 2.71 0.00 0.00 3.97
7 8 4.400567 AGCTGCCATAAAGTTTCTGATTCC 59.599 41.667 2.71 0.00 0.00 3.01
8 9 5.124457 TCAGCTGCCATAAAGTTTCTGATTC 59.876 40.000 9.47 0.00 0.00 2.52
9 10 5.012239 TCAGCTGCCATAAAGTTTCTGATT 58.988 37.500 9.47 0.00 0.00 2.57
10 11 4.592942 TCAGCTGCCATAAAGTTTCTGAT 58.407 39.130 9.47 0.00 0.00 2.90
11 12 4.019792 TCAGCTGCCATAAAGTTTCTGA 57.980 40.909 9.47 0.46 0.00 3.27
12 13 4.397103 TCATCAGCTGCCATAAAGTTTCTG 59.603 41.667 9.47 0.00 0.00 3.02
13 14 4.397417 GTCATCAGCTGCCATAAAGTTTCT 59.603 41.667 9.47 0.00 0.00 2.52
14 15 4.156556 TGTCATCAGCTGCCATAAAGTTTC 59.843 41.667 9.47 0.00 0.00 2.78
15 16 4.081406 TGTCATCAGCTGCCATAAAGTTT 58.919 39.130 9.47 0.00 0.00 2.66
16 17 3.689347 TGTCATCAGCTGCCATAAAGTT 58.311 40.909 9.47 0.00 0.00 2.66
17 18 3.354948 TGTCATCAGCTGCCATAAAGT 57.645 42.857 9.47 0.00 0.00 2.66
18 19 3.630769 ACATGTCATCAGCTGCCATAAAG 59.369 43.478 9.47 0.00 0.00 1.85
19 20 3.623703 ACATGTCATCAGCTGCCATAAA 58.376 40.909 9.47 0.00 0.00 1.40
20 21 3.286329 ACATGTCATCAGCTGCCATAA 57.714 42.857 9.47 0.00 0.00 1.90
21 22 2.946990 CAACATGTCATCAGCTGCCATA 59.053 45.455 9.47 0.00 0.00 2.74
22 23 1.749063 CAACATGTCATCAGCTGCCAT 59.251 47.619 9.47 5.56 0.00 4.40
23 24 1.170442 CAACATGTCATCAGCTGCCA 58.830 50.000 9.47 3.20 0.00 4.92
24 25 1.135489 CACAACATGTCATCAGCTGCC 60.135 52.381 9.47 0.00 0.00 4.85
25 26 1.538512 ACACAACATGTCATCAGCTGC 59.461 47.619 9.47 0.00 36.54 5.25
26 27 3.909776 AACACAACATGTCATCAGCTG 57.090 42.857 7.63 7.63 42.31 4.24
27 28 5.942236 AGAATAACACAACATGTCATCAGCT 59.058 36.000 0.00 0.00 42.31 4.24
28 29 6.025896 CAGAATAACACAACATGTCATCAGC 58.974 40.000 0.00 0.00 42.31 4.26
29 30 6.025896 GCAGAATAACACAACATGTCATCAG 58.974 40.000 0.00 0.00 42.31 2.90
30 31 5.472820 TGCAGAATAACACAACATGTCATCA 59.527 36.000 0.00 0.00 42.31 3.07
31 32 5.941733 TGCAGAATAACACAACATGTCATC 58.058 37.500 0.00 0.00 42.31 2.92
32 33 5.963176 TGCAGAATAACACAACATGTCAT 57.037 34.783 0.00 0.00 42.31 3.06
33 34 5.963176 ATGCAGAATAACACAACATGTCA 57.037 34.783 0.00 0.00 42.31 3.58
35 36 9.955208 CATATTATGCAGAATAACACAACATGT 57.045 29.630 17.09 0.00 46.42 3.21
42 43 9.533983 CGACAATCATATTATGCAGAATAACAC 57.466 33.333 17.09 5.24 33.53 3.32
43 44 9.487790 TCGACAATCATATTATGCAGAATAACA 57.512 29.630 17.09 7.66 33.53 2.41
46 47 9.927668 TCTTCGACAATCATATTATGCAGAATA 57.072 29.630 15.65 15.65 0.00 1.75
47 48 8.837788 TCTTCGACAATCATATTATGCAGAAT 57.162 30.769 11.88 11.88 0.00 2.40
48 49 8.715088 CATCTTCGACAATCATATTATGCAGAA 58.285 33.333 0.00 0.00 0.00 3.02
49 50 7.332678 CCATCTTCGACAATCATATTATGCAGA 59.667 37.037 0.00 0.00 0.00 4.26
50 51 7.413767 CCCATCTTCGACAATCATATTATGCAG 60.414 40.741 0.00 0.00 0.00 4.41
51 52 6.372381 CCCATCTTCGACAATCATATTATGCA 59.628 38.462 0.00 0.00 0.00 3.96
52 53 6.183360 CCCCATCTTCGACAATCATATTATGC 60.183 42.308 0.00 0.00 0.00 3.14
53 54 6.317140 CCCCCATCTTCGACAATCATATTATG 59.683 42.308 0.00 0.00 0.00 1.90
54 55 6.012508 ACCCCCATCTTCGACAATCATATTAT 60.013 38.462 0.00 0.00 0.00 1.28
55 56 5.309543 ACCCCCATCTTCGACAATCATATTA 59.690 40.000 0.00 0.00 0.00 0.98
56 57 4.104738 ACCCCCATCTTCGACAATCATATT 59.895 41.667 0.00 0.00 0.00 1.28
57 58 3.652869 ACCCCCATCTTCGACAATCATAT 59.347 43.478 0.00 0.00 0.00 1.78
58 59 3.045634 ACCCCCATCTTCGACAATCATA 58.954 45.455 0.00 0.00 0.00 2.15
59 60 1.846439 ACCCCCATCTTCGACAATCAT 59.154 47.619 0.00 0.00 0.00 2.45
60 61 1.285280 ACCCCCATCTTCGACAATCA 58.715 50.000 0.00 0.00 0.00 2.57
61 62 3.553828 TTACCCCCATCTTCGACAATC 57.446 47.619 0.00 0.00 0.00 2.67
62 63 3.435026 CCATTACCCCCATCTTCGACAAT 60.435 47.826 0.00 0.00 0.00 2.71
63 64 2.092646 CCATTACCCCCATCTTCGACAA 60.093 50.000 0.00 0.00 0.00 3.18
64 65 1.488812 CCATTACCCCCATCTTCGACA 59.511 52.381 0.00 0.00 0.00 4.35
65 66 1.489230 ACCATTACCCCCATCTTCGAC 59.511 52.381 0.00 0.00 0.00 4.20
66 67 1.488812 CACCATTACCCCCATCTTCGA 59.511 52.381 0.00 0.00 0.00 3.71
67 68 1.211949 ACACCATTACCCCCATCTTCG 59.788 52.381 0.00 0.00 0.00 3.79
68 69 3.747708 GCTACACCATTACCCCCATCTTC 60.748 52.174 0.00 0.00 0.00 2.87
69 70 2.174854 GCTACACCATTACCCCCATCTT 59.825 50.000 0.00 0.00 0.00 2.40
70 71 1.774856 GCTACACCATTACCCCCATCT 59.225 52.381 0.00 0.00 0.00 2.90
71 72 1.202891 GGCTACACCATTACCCCCATC 60.203 57.143 0.00 0.00 38.86 3.51
72 73 0.850784 GGCTACACCATTACCCCCAT 59.149 55.000 0.00 0.00 38.86 4.00
73 74 1.283381 GGGCTACACCATTACCCCCA 61.283 60.000 0.00 0.00 42.05 4.96
74 75 1.283381 TGGGCTACACCATTACCCCC 61.283 60.000 0.00 0.00 42.05 5.40
75 76 0.626916 TTGGGCTACACCATTACCCC 59.373 55.000 0.00 0.00 40.91 4.95
76 77 2.097036 GTTTGGGCTACACCATTACCC 58.903 52.381 0.00 0.00 40.91 3.69
77 78 2.097036 GGTTTGGGCTACACCATTACC 58.903 52.381 0.78 0.00 40.91 2.85
78 79 2.097036 GGGTTTGGGCTACACCATTAC 58.903 52.381 8.51 0.00 40.91 1.89
79 80 1.711375 TGGGTTTGGGCTACACCATTA 59.289 47.619 8.51 0.00 40.91 1.90
80 81 0.485099 TGGGTTTGGGCTACACCATT 59.515 50.000 8.51 0.00 40.91 3.16
81 82 0.709992 ATGGGTTTGGGCTACACCAT 59.290 50.000 8.51 1.74 40.91 3.55
82 83 0.251564 CATGGGTTTGGGCTACACCA 60.252 55.000 8.51 0.00 42.05 4.17
83 84 0.039035 TCATGGGTTTGGGCTACACC 59.961 55.000 0.00 0.00 37.93 4.16
84 85 2.143876 ATCATGGGTTTGGGCTACAC 57.856 50.000 0.00 0.00 0.00 2.90
85 86 2.917713 AATCATGGGTTTGGGCTACA 57.082 45.000 0.00 0.00 0.00 2.74
86 87 3.513515 TCAAAATCATGGGTTTGGGCTAC 59.486 43.478 16.90 0.00 35.79 3.58
87 88 3.784178 TCAAAATCATGGGTTTGGGCTA 58.216 40.909 16.90 1.63 35.79 3.93
88 89 2.618794 TCAAAATCATGGGTTTGGGCT 58.381 42.857 16.90 0.00 35.79 5.19
89 90 3.337358 CTTCAAAATCATGGGTTTGGGC 58.663 45.455 16.90 0.00 35.79 5.36
90 91 3.244491 TGCTTCAAAATCATGGGTTTGGG 60.244 43.478 16.90 12.73 35.79 4.12
91 92 3.747529 GTGCTTCAAAATCATGGGTTTGG 59.252 43.478 16.90 7.16 35.79 3.28
92 93 3.747529 GGTGCTTCAAAATCATGGGTTTG 59.252 43.478 13.00 13.00 36.30 2.93
93 94 3.244526 GGGTGCTTCAAAATCATGGGTTT 60.245 43.478 0.00 0.00 0.00 3.27
94 95 2.302733 GGGTGCTTCAAAATCATGGGTT 59.697 45.455 0.00 0.00 0.00 4.11
95 96 1.901833 GGGTGCTTCAAAATCATGGGT 59.098 47.619 0.00 0.00 0.00 4.51
96 97 1.901159 TGGGTGCTTCAAAATCATGGG 59.099 47.619 0.00 0.00 0.00 4.00
97 98 2.827322 TCTGGGTGCTTCAAAATCATGG 59.173 45.455 0.00 0.00 0.00 3.66
98 99 4.524316 TTCTGGGTGCTTCAAAATCATG 57.476 40.909 0.00 0.00 0.00 3.07
99 100 5.163322 TGTTTTCTGGGTGCTTCAAAATCAT 60.163 36.000 0.00 0.00 0.00 2.45
100 101 4.161189 TGTTTTCTGGGTGCTTCAAAATCA 59.839 37.500 0.00 0.00 0.00 2.57
101 102 4.692228 TGTTTTCTGGGTGCTTCAAAATC 58.308 39.130 0.00 0.00 0.00 2.17
102 103 4.751767 TGTTTTCTGGGTGCTTCAAAAT 57.248 36.364 0.00 0.00 0.00 1.82
103 104 4.020662 ACTTGTTTTCTGGGTGCTTCAAAA 60.021 37.500 0.00 0.00 0.00 2.44
104 105 3.513515 ACTTGTTTTCTGGGTGCTTCAAA 59.486 39.130 0.00 0.00 0.00 2.69
105 106 3.096092 ACTTGTTTTCTGGGTGCTTCAA 58.904 40.909 0.00 0.00 0.00 2.69
106 107 2.733956 ACTTGTTTTCTGGGTGCTTCA 58.266 42.857 0.00 0.00 0.00 3.02
107 108 3.130340 TCAACTTGTTTTCTGGGTGCTTC 59.870 43.478 0.00 0.00 0.00 3.86
108 109 3.096092 TCAACTTGTTTTCTGGGTGCTT 58.904 40.909 0.00 0.00 0.00 3.91
109 110 2.733956 TCAACTTGTTTTCTGGGTGCT 58.266 42.857 0.00 0.00 0.00 4.40
110 111 3.518634 TTCAACTTGTTTTCTGGGTGC 57.481 42.857 0.00 0.00 0.00 5.01
111 112 5.049828 GGATTTCAACTTGTTTTCTGGGTG 58.950 41.667 0.00 0.00 0.00 4.61
112 113 4.100963 GGGATTTCAACTTGTTTTCTGGGT 59.899 41.667 0.00 0.00 0.00 4.51
113 114 4.631131 GGGATTTCAACTTGTTTTCTGGG 58.369 43.478 0.00 0.00 0.00 4.45
114 115 4.037446 TCGGGATTTCAACTTGTTTTCTGG 59.963 41.667 0.00 0.00 0.00 3.86
115 116 5.181690 TCGGGATTTCAACTTGTTTTCTG 57.818 39.130 0.00 0.00 0.00 3.02
116 117 5.845391 TTCGGGATTTCAACTTGTTTTCT 57.155 34.783 0.00 0.00 0.00 2.52
117 118 6.270064 TCTTTCGGGATTTCAACTTGTTTTC 58.730 36.000 0.00 0.00 0.00 2.29
118 119 6.215495 TCTTTCGGGATTTCAACTTGTTTT 57.785 33.333 0.00 0.00 0.00 2.43
119 120 5.845391 TCTTTCGGGATTTCAACTTGTTT 57.155 34.783 0.00 0.00 0.00 2.83
120 121 5.534654 TGATCTTTCGGGATTTCAACTTGTT 59.465 36.000 0.00 0.00 0.00 2.83
121 122 5.070001 TGATCTTTCGGGATTTCAACTTGT 58.930 37.500 0.00 0.00 0.00 3.16
122 123 5.627499 TGATCTTTCGGGATTTCAACTTG 57.373 39.130 0.00 0.00 0.00 3.16
123 124 6.003950 TCTTGATCTTTCGGGATTTCAACTT 58.996 36.000 0.00 0.00 0.00 2.66
124 125 5.560724 TCTTGATCTTTCGGGATTTCAACT 58.439 37.500 0.00 0.00 0.00 3.16
125 126 5.880054 TCTTGATCTTTCGGGATTTCAAC 57.120 39.130 0.00 0.00 0.00 3.18
126 127 5.163622 GCATCTTGATCTTTCGGGATTTCAA 60.164 40.000 0.00 0.00 0.00 2.69
127 128 4.336433 GCATCTTGATCTTTCGGGATTTCA 59.664 41.667 0.00 0.00 0.00 2.69
128 129 4.553547 CGCATCTTGATCTTTCGGGATTTC 60.554 45.833 0.00 0.00 0.00 2.17
129 130 3.313526 CGCATCTTGATCTTTCGGGATTT 59.686 43.478 0.00 0.00 0.00 2.17
130 131 2.874701 CGCATCTTGATCTTTCGGGATT 59.125 45.455 0.00 0.00 0.00 3.01
131 132 2.487934 CGCATCTTGATCTTTCGGGAT 58.512 47.619 0.00 0.00 0.00 3.85
132 133 1.473257 CCGCATCTTGATCTTTCGGGA 60.473 52.381 0.00 0.00 32.55 5.14
133 134 0.940126 CCGCATCTTGATCTTTCGGG 59.060 55.000 0.00 0.00 32.55 5.14
134 135 0.305922 GCCGCATCTTGATCTTTCGG 59.694 55.000 0.00 0.00 38.51 4.30
135 136 1.260033 GAGCCGCATCTTGATCTTTCG 59.740 52.381 0.00 0.00 0.00 3.46
136 137 2.559440 AGAGCCGCATCTTGATCTTTC 58.441 47.619 0.00 0.00 0.00 2.62
137 138 2.706339 AGAGCCGCATCTTGATCTTT 57.294 45.000 0.00 0.00 0.00 2.52
138 139 2.559440 GAAGAGCCGCATCTTGATCTT 58.441 47.619 9.07 0.00 39.63 2.40
139 140 1.537776 CGAAGAGCCGCATCTTGATCT 60.538 52.381 9.07 0.00 39.63 2.75
140 141 0.857935 CGAAGAGCCGCATCTTGATC 59.142 55.000 9.07 0.00 39.63 2.92
141 142 0.461548 TCGAAGAGCCGCATCTTGAT 59.538 50.000 9.07 0.00 39.63 2.57
142 143 0.246360 TTCGAAGAGCCGCATCTTGA 59.754 50.000 9.07 5.70 39.63 3.02
143 144 1.078709 TTTCGAAGAGCCGCATCTTG 58.921 50.000 0.00 4.05 39.63 3.02
144 145 1.936547 GATTTCGAAGAGCCGCATCTT 59.063 47.619 0.00 5.18 42.23 2.40
145 146 1.134699 TGATTTCGAAGAGCCGCATCT 60.135 47.619 0.00 0.00 38.43 2.90
146 147 1.260033 CTGATTTCGAAGAGCCGCATC 59.740 52.381 0.00 0.00 38.43 3.91
147 148 1.293924 CTGATTTCGAAGAGCCGCAT 58.706 50.000 0.00 0.00 38.43 4.73
148 149 1.361668 GCTGATTTCGAAGAGCCGCA 61.362 55.000 12.52 0.87 38.43 5.69
149 150 1.349973 GCTGATTTCGAAGAGCCGC 59.650 57.895 12.52 5.74 38.43 6.53
150 151 0.649475 CTGCTGATTTCGAAGAGCCG 59.351 55.000 18.02 11.20 38.43 5.52
151 152 1.012841 CCTGCTGATTTCGAAGAGCC 58.987 55.000 18.02 3.33 38.43 4.70
152 153 1.396301 CACCTGCTGATTTCGAAGAGC 59.604 52.381 15.35 15.35 38.43 4.09
153 154 1.396301 GCACCTGCTGATTTCGAAGAG 59.604 52.381 0.00 0.00 36.30 2.85
154 155 1.270785 TGCACCTGCTGATTTCGAAGA 60.271 47.619 0.00 0.00 42.66 2.87
155 156 1.159285 TGCACCTGCTGATTTCGAAG 58.841 50.000 0.00 0.00 42.66 3.79
156 157 1.825090 ATGCACCTGCTGATTTCGAA 58.175 45.000 0.00 0.00 42.66 3.71
157 158 2.093500 AGTATGCACCTGCTGATTTCGA 60.093 45.455 0.00 0.00 42.66 3.71
158 159 2.283298 AGTATGCACCTGCTGATTTCG 58.717 47.619 0.00 0.00 42.66 3.46
159 160 3.273434 TGAGTATGCACCTGCTGATTTC 58.727 45.455 0.00 0.00 42.66 2.17
160 161 3.354948 TGAGTATGCACCTGCTGATTT 57.645 42.857 0.00 0.00 42.66 2.17
161 162 3.136077 AGATGAGTATGCACCTGCTGATT 59.864 43.478 0.00 0.00 42.66 2.57
162 163 2.704596 AGATGAGTATGCACCTGCTGAT 59.295 45.455 0.00 0.00 42.66 2.90
163 164 2.113807 AGATGAGTATGCACCTGCTGA 58.886 47.619 0.00 0.00 42.66 4.26
164 165 2.616634 AGATGAGTATGCACCTGCTG 57.383 50.000 0.00 0.00 42.66 4.41
165 166 3.303938 AGTAGATGAGTATGCACCTGCT 58.696 45.455 0.00 0.00 42.66 4.24
166 167 3.068732 TGAGTAGATGAGTATGCACCTGC 59.931 47.826 0.00 0.00 42.50 4.85
167 168 4.926140 TGAGTAGATGAGTATGCACCTG 57.074 45.455 0.00 0.00 0.00 4.00
168 169 5.600069 TCATTGAGTAGATGAGTATGCACCT 59.400 40.000 0.00 0.00 0.00 4.00
169 170 5.847304 TCATTGAGTAGATGAGTATGCACC 58.153 41.667 0.00 0.00 0.00 5.01
170 171 7.377398 AGATCATTGAGTAGATGAGTATGCAC 58.623 38.462 0.00 0.00 36.99 4.57
171 172 7.536159 AGATCATTGAGTAGATGAGTATGCA 57.464 36.000 0.00 0.00 36.99 3.96
172 173 7.871973 ACAAGATCATTGAGTAGATGAGTATGC 59.128 37.037 10.61 0.00 36.99 3.14
173 174 9.194271 CACAAGATCATTGAGTAGATGAGTATG 57.806 37.037 10.61 0.00 36.99 2.39
174 175 9.140874 TCACAAGATCATTGAGTAGATGAGTAT 57.859 33.333 10.61 0.00 36.99 2.12
175 176 8.525290 TCACAAGATCATTGAGTAGATGAGTA 57.475 34.615 10.61 0.00 36.99 2.59
176 177 7.415592 TCACAAGATCATTGAGTAGATGAGT 57.584 36.000 10.61 0.00 36.99 3.41
177 178 7.042590 GCTTCACAAGATCATTGAGTAGATGAG 60.043 40.741 10.61 0.00 36.99 2.90
178 179 6.760298 GCTTCACAAGATCATTGAGTAGATGA 59.240 38.462 10.61 0.00 37.86 2.92
179 180 6.537660 TGCTTCACAAGATCATTGAGTAGATG 59.462 38.462 10.61 7.08 0.00 2.90
180 181 6.538021 GTGCTTCACAAGATCATTGAGTAGAT 59.462 38.462 10.61 0.00 34.08 1.98
181 182 5.871524 GTGCTTCACAAGATCATTGAGTAGA 59.128 40.000 10.61 2.87 34.08 2.59
182 183 5.640783 TGTGCTTCACAAGATCATTGAGTAG 59.359 40.000 10.61 7.71 41.69 2.57
183 184 5.550290 TGTGCTTCACAAGATCATTGAGTA 58.450 37.500 10.61 0.00 41.69 2.59
184 185 4.392047 TGTGCTTCACAAGATCATTGAGT 58.608 39.130 10.61 0.00 41.69 3.41
194 195 6.390319 GTGGATCCACATGTGCTTCACAAG 62.390 50.000 35.21 9.65 42.57 3.16
195 196 4.614492 GTGGATCCACATGTGCTTCACAA 61.614 47.826 35.21 10.30 42.57 3.33
196 197 3.135343 GTGGATCCACATGTGCTTCACA 61.135 50.000 35.21 16.64 45.53 3.58
197 198 1.470098 GTGGATCCACATGTGCTTCAC 59.530 52.381 35.21 18.75 45.53 3.18
198 199 1.825090 GTGGATCCACATGTGCTTCA 58.175 50.000 35.21 11.51 45.53 3.02
208 209 0.532115 GGTTGCCATTGTGGATCCAC 59.468 55.000 33.97 33.97 40.96 4.02
209 210 0.113972 TGGTTGCCATTGTGGATCCA 59.886 50.000 11.44 11.44 40.96 3.41
210 211 1.205417 CTTGGTTGCCATTGTGGATCC 59.795 52.381 4.20 4.20 40.96 3.36
211 212 1.205417 CCTTGGTTGCCATTGTGGATC 59.795 52.381 0.00 0.00 40.96 3.36
212 213 1.203162 TCCTTGGTTGCCATTGTGGAT 60.203 47.619 0.00 0.00 40.96 3.41
213 214 0.187117 TCCTTGGTTGCCATTGTGGA 59.813 50.000 0.00 0.00 40.96 4.02
214 215 0.604578 CTCCTTGGTTGCCATTGTGG 59.395 55.000 0.00 0.00 41.55 4.17
215 216 0.604578 CCTCCTTGGTTGCCATTGTG 59.395 55.000 0.00 0.00 31.53 3.33
216 217 1.187567 GCCTCCTTGGTTGCCATTGT 61.188 55.000 0.00 0.00 38.35 2.71
217 218 1.186917 TGCCTCCTTGGTTGCCATTG 61.187 55.000 0.00 0.00 38.35 2.82
218 219 0.471591 TTGCCTCCTTGGTTGCCATT 60.472 50.000 0.00 0.00 38.35 3.16
219 220 0.252375 ATTGCCTCCTTGGTTGCCAT 60.252 50.000 0.00 0.00 38.35 4.40
220 221 1.155859 ATTGCCTCCTTGGTTGCCA 59.844 52.632 0.00 0.00 38.35 4.92
221 222 1.593265 CATTGCCTCCTTGGTTGCC 59.407 57.895 0.00 0.00 38.35 4.52
222 223 1.079612 GCATTGCCTCCTTGGTTGC 60.080 57.895 0.00 0.00 38.35 4.17
223 224 0.971386 AAGCATTGCCTCCTTGGTTG 59.029 50.000 4.70 0.00 38.35 3.77
224 225 0.971386 CAAGCATTGCCTCCTTGGTT 59.029 50.000 4.70 0.00 40.39 3.67
225 226 2.662309 CAAGCATTGCCTCCTTGGT 58.338 52.632 4.70 0.00 40.39 3.67
234 235 7.606224 TTTGAAGTGACAAACTCAAGCATTGC 61.606 38.462 0.00 0.00 37.45 3.56
235 236 5.806502 TTTGAAGTGACAAACTCAAGCATTG 59.193 36.000 0.00 0.00 38.56 2.82
236 237 5.581126 TTGAAGTGACAAACTCAAGCATT 57.419 34.783 0.00 0.00 38.56 3.56
237 238 5.581126 TTTGAAGTGACAAACTCAAGCAT 57.419 34.783 0.00 0.00 38.56 3.79
238 239 5.581126 ATTTGAAGTGACAAACTCAAGCA 57.419 34.783 0.00 0.00 41.49 3.91
239 240 7.985634 TTTATTTGAAGTGACAAACTCAAGC 57.014 32.000 0.00 0.00 41.49 4.01
272 273 9.394767 TGTTGATATCAAGCATACATAGTGTTT 57.605 29.630 18.47 0.00 36.39 2.83
273 274 8.962884 TGTTGATATCAAGCATACATAGTGTT 57.037 30.769 18.47 0.00 36.39 3.32
274 275 8.962884 TTGTTGATATCAAGCATACATAGTGT 57.037 30.769 18.47 0.00 36.39 3.55
300 301 3.181509 ACAATGTCGCACGTAAACAACAA 60.182 39.130 0.00 0.00 0.00 2.83
382 383 7.775561 GGTCCTCATATTTCCTTTTGTGTATCT 59.224 37.037 0.00 0.00 0.00 1.98
383 384 7.013369 GGGTCCTCATATTTCCTTTTGTGTATC 59.987 40.741 0.00 0.00 0.00 2.24
390 391 4.524053 GACGGGTCCTCATATTTCCTTTT 58.476 43.478 0.00 0.00 0.00 2.27
391 392 3.118000 GGACGGGTCCTCATATTTCCTTT 60.118 47.826 10.60 0.00 46.16 3.11
441 442 3.864686 CTCAAATCCACGCGGCCG 61.865 66.667 24.05 24.05 41.14 6.13
442 443 3.508840 CCTCAAATCCACGCGGCC 61.509 66.667 12.47 0.00 0.00 6.13
443 444 3.508840 CCCTCAAATCCACGCGGC 61.509 66.667 12.47 0.00 0.00 6.53
444 445 2.824041 CCCCTCAAATCCACGCGG 60.824 66.667 12.47 0.00 0.00 6.46
445 446 3.508840 GCCCCTCAAATCCACGCG 61.509 66.667 3.53 3.53 0.00 6.01
446 447 3.140814 GGCCCCTCAAATCCACGC 61.141 66.667 0.00 0.00 0.00 5.34
447 448 2.824041 CGGCCCCTCAAATCCACG 60.824 66.667 0.00 0.00 0.00 4.94
448 449 2.284515 ATCCGGCCCCTCAAATCCAC 62.285 60.000 0.00 0.00 0.00 4.02
449 450 1.580066 AATCCGGCCCCTCAAATCCA 61.580 55.000 0.00 0.00 0.00 3.41
450 451 0.397114 AAATCCGGCCCCTCAAATCC 60.397 55.000 0.00 0.00 0.00 3.01
451 452 0.746659 CAAATCCGGCCCCTCAAATC 59.253 55.000 0.00 0.00 0.00 2.17
452 453 0.334676 TCAAATCCGGCCCCTCAAAT 59.665 50.000 0.00 0.00 0.00 2.32
453 454 0.610785 GTCAAATCCGGCCCCTCAAA 60.611 55.000 0.00 0.00 0.00 2.69
454 455 1.001393 GTCAAATCCGGCCCCTCAA 60.001 57.895 0.00 0.00 0.00 3.02
471 472 3.931578 GAGCATCTACAACTGGACTTGT 58.068 45.455 0.00 0.00 38.03 3.16
497 498 6.864342 TCCTAGTAAGCTGTTTCTATGTGAC 58.136 40.000 0.00 0.00 0.00 3.67
506 507 9.392259 GGTTATTGTTATCCTAGTAAGCTGTTT 57.608 33.333 0.00 0.00 0.00 2.83
508 509 7.985752 GTGGTTATTGTTATCCTAGTAAGCTGT 59.014 37.037 0.00 0.00 0.00 4.40
539 540 7.423199 GTTCCTTTCGACCTACATTTTTCTTT 58.577 34.615 0.00 0.00 0.00 2.52
547 548 3.558533 GGTTGGTTCCTTTCGACCTACAT 60.559 47.826 8.81 0.00 41.46 2.29
575 576 0.944386 ACAAATCTGTGGTCGTGTGC 59.056 50.000 0.00 0.00 33.30 4.57
607 608 6.041637 GGTATGAAAACAACCTTCCTTTTCCT 59.958 38.462 0.00 0.00 34.37 3.36
794 799 0.463116 GGGTCCACATACGCCGAAAT 60.463 55.000 0.00 0.00 0.00 2.17
796 801 2.580276 GGGTCCACATACGCCGAA 59.420 61.111 0.00 0.00 0.00 4.30
800 805 2.585247 GCTCGGGTCCACATACGC 60.585 66.667 0.00 0.00 0.00 4.42
884 891 2.998667 GCTTCGAAGACGCCGATG 59.001 61.111 28.95 0.00 46.62 3.84
974 981 4.256180 CGTATGGCCAGGGGGAGC 62.256 72.222 13.05 0.00 35.59 4.70
991 1000 1.818674 CTGTGTTTCTTGGGTATGGGC 59.181 52.381 0.00 0.00 0.00 5.36
993 1002 2.228822 GTGCTGTGTTTCTTGGGTATGG 59.771 50.000 0.00 0.00 0.00 2.74
994 1003 3.149196 AGTGCTGTGTTTCTTGGGTATG 58.851 45.455 0.00 0.00 0.00 2.39
995 1004 3.508845 AGTGCTGTGTTTCTTGGGTAT 57.491 42.857 0.00 0.00 0.00 2.73
996 1005 3.211045 GAAGTGCTGTGTTTCTTGGGTA 58.789 45.455 0.00 0.00 0.00 3.69
997 1006 2.024414 GAAGTGCTGTGTTTCTTGGGT 58.976 47.619 0.00 0.00 0.00 4.51
998 1007 1.338020 GGAAGTGCTGTGTTTCTTGGG 59.662 52.381 0.00 0.00 0.00 4.12
999 1008 1.338020 GGGAAGTGCTGTGTTTCTTGG 59.662 52.381 0.00 0.00 0.00 3.61
1000 1009 2.023673 TGGGAAGTGCTGTGTTTCTTG 58.976 47.619 0.00 0.00 0.00 3.02
1001 1010 2.435372 TGGGAAGTGCTGTGTTTCTT 57.565 45.000 0.00 0.00 0.00 2.52
1002 1011 2.107204 AGATGGGAAGTGCTGTGTTTCT 59.893 45.455 0.00 0.00 0.00 2.52
1003 1012 2.485814 GAGATGGGAAGTGCTGTGTTTC 59.514 50.000 0.00 0.00 0.00 2.78
1004 1013 2.158623 TGAGATGGGAAGTGCTGTGTTT 60.159 45.455 0.00 0.00 0.00 2.83
1082 1099 4.194720 AGCCGCGACGAGGATGAC 62.195 66.667 22.59 3.22 0.00 3.06
1135 1152 2.424812 GGGTGGGCATTGATATTCCAGT 60.425 50.000 0.00 0.00 0.00 4.00
1190 1207 7.042925 GGCAGAGCAAGCATTAATTAATCTTTG 60.043 37.037 18.38 18.38 0.00 2.77
1243 1263 4.351054 CCTGCCCTCCACCACCAC 62.351 72.222 0.00 0.00 0.00 4.16
1481 1501 3.470888 CGGATCCCTCCTGGCGTT 61.471 66.667 6.06 0.00 39.65 4.84
1483 1503 3.154473 TTCGGATCCCTCCTGGCG 61.154 66.667 6.06 0.00 39.65 5.69
1526 1546 2.093394 TCATCAAAGATTTACCGCCGGA 60.093 45.455 11.71 0.00 0.00 5.14
1555 1575 8.443953 AAGCACTAAATACAATTCTCCAGATC 57.556 34.615 0.00 0.00 0.00 2.75
1575 1597 8.088365 AGGGATAAAAACTCAAAACATAAGCAC 58.912 33.333 0.00 0.00 0.00 4.40
1595 1617 3.567164 GGAAACGTACAGATCGAGGGATA 59.433 47.826 0.00 0.00 31.51 2.59
1649 1678 5.673514 TGATCTTATTGCAGAGCACACATA 58.326 37.500 0.00 0.00 38.71 2.29
1659 1692 6.198403 GCACAATGTTGATGATCTTATTGCAG 59.802 38.462 13.00 9.28 0.00 4.41
1690 1723 2.584031 AGGGCATCCACCATATATGCAT 59.416 45.455 3.79 3.79 46.18 3.96
1707 1745 2.419159 GGCAAGAAATTCATGGAAGGGC 60.419 50.000 0.29 0.00 0.00 5.19
1708 1746 2.169144 GGGCAAGAAATTCATGGAAGGG 59.831 50.000 0.29 0.00 0.00 3.95
1713 1751 2.564062 ACACTGGGCAAGAAATTCATGG 59.436 45.455 0.00 0.00 0.00 3.66
1740 1778 3.668447 TCCTCTCATCAAACTGAACTGC 58.332 45.455 0.00 0.00 0.00 4.40
1757 1801 2.295629 GGTTACCCGCATAGTACTCCTC 59.704 54.545 0.00 0.00 0.00 3.71
1767 1811 0.253894 GGTACCAAGGTTACCCGCAT 59.746 55.000 7.15 0.00 35.12 4.73
1771 1815 0.538584 CTCCGGTACCAAGGTTACCC 59.461 60.000 13.54 0.00 0.00 3.69
1871 1915 2.353208 GGCCTAGCCTAATGATCACTCG 60.353 54.545 0.00 0.00 46.69 4.18
1987 2050 1.138859 GCCAAAACTGCCAGACCTTTT 59.861 47.619 0.00 0.00 0.00 2.27
2018 2081 5.385198 AGAAACCATTTGTGGTATCAGTGT 58.615 37.500 0.00 0.00 42.20 3.55
2019 2082 5.964958 AGAAACCATTTGTGGTATCAGTG 57.035 39.130 0.00 0.00 42.20 3.66
2134 2197 8.579863 CAGGGTATGAAGCATCGATCATATATA 58.420 37.037 9.12 0.00 39.84 0.86
2135 2198 7.440198 CAGGGTATGAAGCATCGATCATATAT 58.560 38.462 9.12 0.00 39.84 0.86
2136 2199 6.683861 GCAGGGTATGAAGCATCGATCATATA 60.684 42.308 9.12 0.00 39.84 0.86
2137 2200 5.668471 CAGGGTATGAAGCATCGATCATAT 58.332 41.667 9.12 0.00 39.84 1.78
2262 2333 2.548464 AGCCCATGCCCTGATTTTTA 57.452 45.000 0.00 0.00 38.69 1.52
2263 2334 1.660242 AAGCCCATGCCCTGATTTTT 58.340 45.000 0.00 0.00 38.69 1.94
2264 2335 1.279846 CAAAGCCCATGCCCTGATTTT 59.720 47.619 0.00 0.00 38.69 1.82
2265 2336 0.906775 CAAAGCCCATGCCCTGATTT 59.093 50.000 0.00 0.00 38.69 2.17
2266 2337 1.619807 GCAAAGCCCATGCCCTGATT 61.620 55.000 0.00 0.00 37.85 2.57
2267 2338 2.062177 GCAAAGCCCATGCCCTGAT 61.062 57.895 0.00 0.00 37.85 2.90
2268 2339 2.681064 GCAAAGCCCATGCCCTGA 60.681 61.111 0.00 0.00 37.85 3.86
2289 2360 5.363292 TGCCCATGCACTGACATATATTTTT 59.637 36.000 0.00 0.00 44.23 1.94
2290 2361 4.894705 TGCCCATGCACTGACATATATTTT 59.105 37.500 0.00 0.00 44.23 1.82
2291 2362 4.472496 TGCCCATGCACTGACATATATTT 58.528 39.130 0.00 0.00 44.23 1.40
2387 2486 4.441495 AGGGACTAAGCAAAAACAAGTTGC 60.441 41.667 1.81 0.92 44.90 4.17
2408 2507 7.224949 GCTATGTTAAGGACTAAGCAACTAAGG 59.775 40.741 0.00 0.00 36.97 2.69
2417 2516 5.232414 GCTTCGTGCTATGTTAAGGACTAAG 59.768 44.000 5.72 5.72 40.95 2.18
2433 2532 1.696832 GGTTCGATGGAGCTTCGTGC 61.697 60.000 6.21 1.43 43.29 5.34
2436 5670 0.867753 CGAGGTTCGATGGAGCTTCG 60.868 60.000 10.99 10.99 43.91 3.79
2614 6126 2.030091 GCGACTACTTTAATGGGTTCGC 59.970 50.000 13.20 13.20 35.82 4.70
2639 6151 0.535335 TACGCCTCTTTTGGAGCGAT 59.465 50.000 10.49 0.00 40.93 4.58


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.