Multiple sequence alignment - TraesCS5A01G228100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G228100 chr5A 100.000 5830 0 0 1 5830 444540569 444534740 0.000000e+00 10767
1 TraesCS5A01G228100 chr5A 88.644 317 29 7 3642 3953 210535698 210535384 4.260000e-101 379
2 TraesCS5A01G228100 chr5D 94.623 2399 88 20 177 2557 347436877 347439252 0.000000e+00 3677
3 TraesCS5A01G228100 chr5D 95.455 1892 64 12 3950 5830 347440397 347442277 0.000000e+00 2998
4 TraesCS5A01G228100 chr5D 94.304 1071 21 9 2606 3649 347439344 347440401 0.000000e+00 1604
5 TraesCS5A01G228100 chr5D 95.812 191 7 1 1 191 347436654 347436843 2.040000e-79 307
6 TraesCS5A01G228100 chr5B 96.077 1810 51 9 3950 5744 403712171 403710367 0.000000e+00 2931
7 TraesCS5A01G228100 chr5B 94.799 1365 50 10 1443 2802 403714399 403713051 0.000000e+00 2108
8 TraesCS5A01G228100 chr5B 92.462 1300 74 13 1 1286 403716482 403715193 0.000000e+00 1836
9 TraesCS5A01G228100 chr5B 93.187 866 26 11 2791 3647 403713010 403712169 0.000000e+00 1242
10 TraesCS5A01G228100 chr5B 96.667 90 3 0 5741 5830 403710262 403710173 3.640000e-32 150
11 TraesCS5A01G228100 chr2A 89.423 312 29 4 3646 3954 203459948 203459638 1.970000e-104 390
12 TraesCS5A01G228100 chr7B 88.959 317 31 4 3640 3953 559265060 559264745 7.080000e-104 388
13 TraesCS5A01G228100 chr4A 89.172 314 30 4 3641 3951 541366913 541367225 7.080000e-104 388
14 TraesCS5A01G228100 chr3B 88.750 320 30 6 3637 3953 755478798 755478482 2.550000e-103 387
15 TraesCS5A01G228100 chr3B 88.644 317 31 5 3638 3951 254192872 254193186 1.190000e-101 381
16 TraesCS5A01G228100 chr7A 89.286 308 29 4 3647 3951 204736748 204737054 3.300000e-102 383
17 TraesCS5A01G228100 chr3A 88.328 317 33 4 3640 3953 560917504 560917189 1.530000e-100 377
18 TraesCS5A01G228100 chr6B 88.088 319 32 6 3638 3953 628238610 628238925 1.980000e-99 374


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G228100 chr5A 444534740 444540569 5829 True 10767.0 10767 100.0000 1 5830 1 chr5A.!!$R2 5829
1 TraesCS5A01G228100 chr5D 347436654 347442277 5623 False 2146.5 3677 95.0485 1 5830 4 chr5D.!!$F1 5829
2 TraesCS5A01G228100 chr5B 403710173 403716482 6309 True 1653.4 2931 94.6384 1 5830 5 chr5B.!!$R1 5829

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
878 949 0.589223 CTACGTTTTCCGGCTTTGCA 59.411 50.000 0.0 0.0 42.24 4.08 F
1074 1154 0.105760 GCAGATCCCTCCTCCTCTCA 60.106 60.000 0.0 0.0 0.00 3.27 F
1511 2250 1.074405 TGCCTGCCTTTCTGATCTTGT 59.926 47.619 0.0 0.0 0.00 3.16 F
3321 4174 0.323360 GCACTGCCTATTTGGTGGGA 60.323 55.000 0.0 0.0 38.35 4.37 F
3951 4804 0.038166 TGCGAATCAAAGAGGCCCTT 59.962 50.000 0.0 0.0 36.47 3.95 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1842 2584 1.971357 CTCATCTATAGTTGCCCCCGT 59.029 52.381 6.0 0.00 0.00 5.28 R
2311 3054 5.129815 ACAGTGTCAACTTACTTCCTACCAA 59.870 40.000 0.0 0.00 32.98 3.67 R
3324 4177 4.042187 AGAATTGGTGCTAGAACTCCAGTT 59.958 41.667 0.0 0.36 41.64 3.16 R
4516 5372 0.031994 GCAACACCTGCGGAACATTT 59.968 50.000 0.0 0.00 42.37 2.32 R
4946 5808 0.810648 ATACATTGTGTGCCTTGCCG 59.189 50.000 0.0 0.00 0.00 5.69 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 6.853720 TGTAACTACATCTCAAGCTCTACAC 58.146 40.000 0.00 0.00 0.00 2.90
136 137 9.539825 AAGTACATAGAACAGATAAGATGCTTG 57.460 33.333 0.00 0.00 0.00 4.01
146 147 8.430801 ACAGATAAGATGCTTGAAACATACTC 57.569 34.615 0.00 0.00 0.00 2.59
191 195 7.803279 ATGGGATTCATGATGATATGATTCG 57.197 36.000 0.00 0.00 37.89 3.34
265 317 8.650714 GCTTTGATCATTCATCAGTTTAAAACC 58.349 33.333 0.00 0.00 42.76 3.27
271 323 6.922957 TCATTCATCAGTTTAAAACCAACAGC 59.077 34.615 0.00 0.00 0.00 4.40
329 381 3.011818 CAATGCAGCAACCAGACTATCA 58.988 45.455 0.00 0.00 0.00 2.15
373 428 2.902486 AGCTCTGAAGGTTGATCTGACA 59.098 45.455 0.00 0.00 0.00 3.58
383 438 4.520492 AGGTTGATCTGACATGAAACCAAC 59.480 41.667 0.00 5.90 39.61 3.77
435 491 4.378459 CGCACAAACCCTAATCTGAGAAAC 60.378 45.833 0.00 0.00 0.00 2.78
794 858 0.803117 GGCCTCGCAGTAAAAGAACC 59.197 55.000 0.00 0.00 0.00 3.62
800 864 1.431496 GCAGTAAAAGAACCGGCGTA 58.569 50.000 6.01 0.00 0.00 4.42
802 866 2.417586 GCAGTAAAAGAACCGGCGTATT 59.582 45.455 6.01 0.00 0.00 1.89
803 867 3.726782 GCAGTAAAAGAACCGGCGTATTG 60.727 47.826 6.01 0.00 0.00 1.90
847 911 6.118195 CGAGTTATACGGCAAATAAACGAAG 58.882 40.000 0.00 0.00 0.00 3.79
869 940 1.403382 GGTCTCCCGTCTACGTTTTCC 60.403 57.143 0.00 0.00 37.74 3.13
878 949 0.589223 CTACGTTTTCCGGCTTTGCA 59.411 50.000 0.00 0.00 42.24 4.08
884 955 2.676016 TTTCCGGCTTTGCACTTGCG 62.676 55.000 0.00 0.00 45.83 4.85
892 963 2.408368 GCTTTGCACTTGCGTTTTATCC 59.592 45.455 0.00 0.00 45.83 2.59
910 981 8.803235 GTTTTATCCAATTTACAGAAAGGTCCT 58.197 33.333 0.00 0.00 0.00 3.85
989 1068 1.153667 CAGAGGAGTGAGAAGCGCC 60.154 63.158 2.29 0.00 0.00 6.53
1074 1154 0.105760 GCAGATCCCTCCTCCTCTCA 60.106 60.000 0.00 0.00 0.00 3.27
1262 1342 2.310233 CCGATAAGGTGATGCGCCG 61.310 63.158 4.18 0.00 39.30 6.46
1359 1467 7.275920 AGCTTCTTGAAAGAACAGAAGAACTA 58.724 34.615 11.48 0.00 39.95 2.24
1409 2148 4.439974 GCATCAATAGAAAAATGTGGCCGA 60.440 41.667 0.00 0.00 0.00 5.54
1415 2154 2.159198 AGAAAAATGTGGCCGATGCATC 60.159 45.455 17.10 17.10 40.13 3.91
1492 2231 7.323420 TGAACTCTAGTTGGACTGTGAATATG 58.677 38.462 0.00 0.00 38.56 1.78
1497 2236 2.042686 TGGACTGTGAATATGCCTGC 57.957 50.000 0.00 0.00 0.00 4.85
1507 2246 4.023365 GTGAATATGCCTGCCTTTCTGATC 60.023 45.833 0.00 0.00 0.00 2.92
1511 2250 1.074405 TGCCTGCCTTTCTGATCTTGT 59.926 47.619 0.00 0.00 0.00 3.16
1711 2450 6.364568 TCTATCTTGTATATGCATGCTGGT 57.635 37.500 20.33 7.62 0.00 4.00
1740 2479 3.056678 TGGTGATGCCTATTTGCAGTTTG 60.057 43.478 0.00 0.00 45.93 2.93
1741 2480 3.514645 GTGATGCCTATTTGCAGTTTGG 58.485 45.455 0.00 0.00 45.93 3.28
1742 2481 2.094078 TGATGCCTATTTGCAGTTTGGC 60.094 45.455 13.82 13.82 45.93 4.52
1743 2482 1.336131 TGCCTATTTGCAGTTTGGCA 58.664 45.000 17.68 17.68 46.59 4.92
1744 2483 1.901159 TGCCTATTTGCAGTTTGGCAT 59.099 42.857 17.68 0.00 44.35 4.40
1818 2560 3.389329 AGGATTGGTTGAGCAGTCGATAT 59.611 43.478 0.00 0.00 0.00 1.63
1842 2584 3.340034 CAATACGTAGGGTTTTCAGCCA 58.660 45.455 0.08 0.00 43.87 4.75
2161 2903 3.064900 AGAGAGTGGTGCATTCTTTCC 57.935 47.619 0.00 0.00 30.72 3.13
2359 3102 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2360 3103 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2361 3104 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2362 3105 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2553 3296 1.102978 GAGAGAGGTCAGGCTCTGTC 58.897 60.000 0.00 0.00 41.33 3.51
2560 3303 1.495878 GTCAGGCTCTGTCATATGCG 58.504 55.000 0.00 0.00 32.61 4.73
2595 3338 5.944599 AGACTTTTCTTGTGCATCATCATCT 59.055 36.000 0.00 0.00 0.00 2.90
2630 3416 5.337652 GCTCCTTACACTTCTGTCACCTTAT 60.338 44.000 0.00 0.00 0.00 1.73
2696 3482 6.926272 CCCCGATTTGTTCATTGAAAAGTAAA 59.074 34.615 0.00 2.06 0.00 2.01
2831 3670 7.516198 AATCACTTTTACTCATGCAAGACTT 57.484 32.000 0.00 0.00 0.00 3.01
2919 3765 8.465201 CCTATACTTTGGAGTTAGTACGAAACT 58.535 37.037 14.23 14.23 39.84 2.66
3047 3893 8.980596 AGATGCCTTATAATTTTGGATGTTCAA 58.019 29.630 0.00 0.00 0.00 2.69
3048 3894 9.768662 GATGCCTTATAATTTTGGATGTTCAAT 57.231 29.630 0.00 0.00 0.00 2.57
3098 3950 6.377146 ACTACTGCAGTTAACCCATTTAATGG 59.623 38.462 27.06 16.56 41.90 3.16
3185 4037 1.073284 TCACTGGTCCTTTTACTGCCC 59.927 52.381 0.00 0.00 0.00 5.36
3321 4174 0.323360 GCACTGCCTATTTGGTGGGA 60.323 55.000 0.00 0.00 38.35 4.37
3324 4177 3.897239 CACTGCCTATTTGGTGGGAATA 58.103 45.455 0.00 0.00 38.35 1.75
3467 4320 6.399743 TGTCGGTGTATTGAATAGTTTGCTA 58.600 36.000 0.00 0.00 0.00 3.49
3528 4381 1.089920 CTGCTGTATTTGCCTTCGCT 58.910 50.000 0.00 0.00 35.36 4.93
3585 4438 9.498176 TTTGTACTTGGTAATTTTCTAGGAGAC 57.502 33.333 0.00 0.00 0.00 3.36
3589 4442 7.616313 ACTTGGTAATTTTCTAGGAGACTCAG 58.384 38.462 4.53 0.00 43.67 3.35
3649 4502 5.237996 CCATCTGTGCATGAACATACTTAGG 59.762 44.000 7.07 0.52 0.00 2.69
3650 4503 4.769688 TCTGTGCATGAACATACTTAGGG 58.230 43.478 7.07 0.00 0.00 3.53
3651 4504 3.278574 TGTGCATGAACATACTTAGGGC 58.721 45.455 1.03 0.00 0.00 5.19
3652 4505 3.054434 TGTGCATGAACATACTTAGGGCT 60.054 43.478 1.03 0.00 0.00 5.19
3653 4506 3.561725 GTGCATGAACATACTTAGGGCTC 59.438 47.826 0.00 0.00 0.00 4.70
3654 4507 3.142174 GCATGAACATACTTAGGGCTCC 58.858 50.000 0.00 0.00 0.00 4.70
3655 4508 3.181450 GCATGAACATACTTAGGGCTCCT 60.181 47.826 0.00 0.00 37.71 3.69
3656 4509 4.687219 GCATGAACATACTTAGGGCTCCTT 60.687 45.833 0.00 0.00 34.61 3.36
3657 4510 5.440610 CATGAACATACTTAGGGCTCCTTT 58.559 41.667 0.00 0.00 34.61 3.11
3658 4511 4.843728 TGAACATACTTAGGGCTCCTTTG 58.156 43.478 0.00 0.00 34.61 2.77
3659 4512 4.534500 TGAACATACTTAGGGCTCCTTTGA 59.466 41.667 0.00 0.00 34.61 2.69
3660 4513 5.191722 TGAACATACTTAGGGCTCCTTTGAT 59.808 40.000 0.00 0.00 34.61 2.57
3661 4514 5.717119 ACATACTTAGGGCTCCTTTGATT 57.283 39.130 0.00 0.00 34.61 2.57
3662 4515 5.685728 ACATACTTAGGGCTCCTTTGATTC 58.314 41.667 0.00 0.00 34.61 2.52
3663 4516 5.191722 ACATACTTAGGGCTCCTTTGATTCA 59.808 40.000 0.00 0.00 34.61 2.57
3664 4517 4.657814 ACTTAGGGCTCCTTTGATTCAA 57.342 40.909 0.00 0.00 34.61 2.69
3665 4518 4.998051 ACTTAGGGCTCCTTTGATTCAAA 58.002 39.130 11.19 11.19 34.61 2.69
3667 4520 3.532641 AGGGCTCCTTTGATTCAAAGT 57.467 42.857 28.50 12.99 46.40 2.66
3668 4521 4.657814 AGGGCTCCTTTGATTCAAAGTA 57.342 40.909 28.50 17.82 46.40 2.24
3669 4522 5.198602 AGGGCTCCTTTGATTCAAAGTAT 57.801 39.130 28.50 11.53 46.40 2.12
3670 4523 5.583932 AGGGCTCCTTTGATTCAAAGTATT 58.416 37.500 28.50 11.79 46.40 1.89
3671 4524 6.019108 AGGGCTCCTTTGATTCAAAGTATTT 58.981 36.000 28.50 12.59 46.40 1.40
3672 4525 6.498303 AGGGCTCCTTTGATTCAAAGTATTTT 59.502 34.615 28.50 13.00 46.40 1.82
3673 4526 6.813649 GGGCTCCTTTGATTCAAAGTATTTTC 59.186 38.462 28.50 16.52 46.40 2.29
3674 4527 7.310052 GGGCTCCTTTGATTCAAAGTATTTTCT 60.310 37.037 28.50 0.00 46.40 2.52
3675 4528 8.090831 GGCTCCTTTGATTCAAAGTATTTTCTT 58.909 33.333 28.50 0.00 46.40 2.52
3729 4582 9.974980 GGAATTTTTCCTATGTTAGTTGTTTGA 57.025 29.630 0.00 0.00 46.57 2.69
3737 4590 9.613428 TCCTATGTTAGTTGTTTGATTCATAGG 57.387 33.333 16.84 16.84 46.97 2.57
3742 4595 9.513906 TGTTAGTTGTTTGATTCATAGGATTGA 57.486 29.630 0.00 0.00 0.00 2.57
3761 4614 7.371159 GGATTGAATCCTATCGGAATTTTTCC 58.629 38.462 16.79 0.00 46.19 3.13
3762 4615 7.231519 GGATTGAATCCTATCGGAATTTTTCCT 59.768 37.037 16.79 0.00 45.72 3.36
3769 4622 8.448816 ATCCTATCGGAATTTTTCCTAAGGATT 58.551 33.333 18.58 9.97 46.77 3.01
3782 4635 9.955102 TTTTCCTAAGGATTTCTTTCTACTACC 57.045 33.333 0.00 0.00 36.93 3.18
3783 4636 8.912614 TTCCTAAGGATTTCTTTCTACTACCT 57.087 34.615 0.00 0.00 36.93 3.08
3784 4637 8.536340 TCCTAAGGATTTCTTTCTACTACCTC 57.464 38.462 0.00 0.00 36.93 3.85
3785 4638 7.564292 TCCTAAGGATTTCTTTCTACTACCTCC 59.436 40.741 0.00 0.00 36.93 4.30
3786 4639 6.563037 AAGGATTTCTTTCTACTACCTCCC 57.437 41.667 0.00 0.00 29.99 4.30
3787 4640 5.600749 AGGATTTCTTTCTACTACCTCCCA 58.399 41.667 0.00 0.00 0.00 4.37
3788 4641 6.213525 AGGATTTCTTTCTACTACCTCCCAT 58.786 40.000 0.00 0.00 0.00 4.00
3789 4642 7.371043 AGGATTTCTTTCTACTACCTCCCATA 58.629 38.462 0.00 0.00 0.00 2.74
3790 4643 7.511028 AGGATTTCTTTCTACTACCTCCCATAG 59.489 40.741 0.00 0.00 0.00 2.23
3804 4657 5.096443 CTCCCATAGGATTTCTAGCATCC 57.904 47.826 11.24 11.24 42.93 3.51
3805 4658 4.502415 TCCCATAGGATTTCTAGCATCCA 58.498 43.478 18.29 8.52 42.63 3.41
3806 4659 4.287067 TCCCATAGGATTTCTAGCATCCAC 59.713 45.833 18.29 0.00 42.63 4.02
3807 4660 4.288105 CCCATAGGATTTCTAGCATCCACT 59.712 45.833 18.29 5.94 42.63 4.00
3808 4661 5.486526 CCATAGGATTTCTAGCATCCACTC 58.513 45.833 18.29 0.00 42.63 3.51
3809 4662 5.012458 CCATAGGATTTCTAGCATCCACTCA 59.988 44.000 18.29 5.66 42.63 3.41
3810 4663 6.464892 CCATAGGATTTCTAGCATCCACTCAA 60.465 42.308 18.29 4.13 42.63 3.02
3811 4664 5.441718 AGGATTTCTAGCATCCACTCAAA 57.558 39.130 18.29 0.00 42.63 2.69
3812 4665 5.189180 AGGATTTCTAGCATCCACTCAAAC 58.811 41.667 18.29 0.00 42.63 2.93
3813 4666 4.336713 GGATTTCTAGCATCCACTCAAACC 59.663 45.833 13.42 0.00 40.21 3.27
3814 4667 4.640771 TTTCTAGCATCCACTCAAACCT 57.359 40.909 0.00 0.00 0.00 3.50
3815 4668 3.895232 TCTAGCATCCACTCAAACCTC 57.105 47.619 0.00 0.00 0.00 3.85
3816 4669 3.445008 TCTAGCATCCACTCAAACCTCT 58.555 45.455 0.00 0.00 0.00 3.69
3817 4670 3.840666 TCTAGCATCCACTCAAACCTCTT 59.159 43.478 0.00 0.00 0.00 2.85
3818 4671 3.515602 AGCATCCACTCAAACCTCTTT 57.484 42.857 0.00 0.00 0.00 2.52
3819 4672 3.152341 AGCATCCACTCAAACCTCTTTG 58.848 45.455 0.00 0.00 38.56 2.77
3820 4673 3.149196 GCATCCACTCAAACCTCTTTGA 58.851 45.455 0.00 0.00 42.93 2.69
3821 4674 3.569701 GCATCCACTCAAACCTCTTTGAA 59.430 43.478 0.00 0.00 44.18 2.69
3822 4675 4.037923 GCATCCACTCAAACCTCTTTGAAA 59.962 41.667 0.00 0.00 44.18 2.69
3823 4676 5.766222 CATCCACTCAAACCTCTTTGAAAG 58.234 41.667 0.00 0.00 44.18 2.62
3824 4677 5.110814 TCCACTCAAACCTCTTTGAAAGA 57.889 39.130 7.49 7.49 44.18 2.52
3825 4678 5.505780 TCCACTCAAACCTCTTTGAAAGAA 58.494 37.500 9.15 0.00 44.18 2.52
3826 4679 6.129179 TCCACTCAAACCTCTTTGAAAGAAT 58.871 36.000 9.15 0.00 44.18 2.40
3827 4680 6.263168 TCCACTCAAACCTCTTTGAAAGAATC 59.737 38.462 9.15 0.00 44.18 2.52
3828 4681 6.442112 CACTCAAACCTCTTTGAAAGAATCC 58.558 40.000 9.15 0.00 44.18 3.01
3829 4682 6.264067 CACTCAAACCTCTTTGAAAGAATCCT 59.736 38.462 9.15 0.00 44.18 3.24
3830 4683 6.836007 ACTCAAACCTCTTTGAAAGAATCCTT 59.164 34.615 9.15 0.00 44.18 3.36
3831 4684 7.343057 ACTCAAACCTCTTTGAAAGAATCCTTT 59.657 33.333 9.15 1.96 44.18 3.11
3832 4685 7.491682 TCAAACCTCTTTGAAAGAATCCTTTG 58.508 34.615 9.15 12.36 42.34 2.77
3833 4686 7.124147 TCAAACCTCTTTGAAAGAATCCTTTGT 59.876 33.333 9.15 0.00 42.34 2.83
3834 4687 7.423844 AACCTCTTTGAAAGAATCCTTTGTT 57.576 32.000 9.15 2.17 42.30 2.83
3835 4688 7.423844 ACCTCTTTGAAAGAATCCTTTGTTT 57.576 32.000 9.15 0.00 42.30 2.83
3836 4689 7.851228 ACCTCTTTGAAAGAATCCTTTGTTTT 58.149 30.769 9.15 0.00 42.30 2.43
3837 4690 8.321353 ACCTCTTTGAAAGAATCCTTTGTTTTT 58.679 29.630 9.15 0.00 42.30 1.94
3865 4718 5.945466 GATGCAATCAAACAACCCAAAAT 57.055 34.783 0.00 0.00 44.70 1.82
3866 4719 5.930405 GATGCAATCAAACAACCCAAAATC 58.070 37.500 0.00 0.00 44.70 2.17
3867 4720 4.133078 TGCAATCAAACAACCCAAAATCC 58.867 39.130 0.00 0.00 0.00 3.01
3868 4721 4.141528 TGCAATCAAACAACCCAAAATCCT 60.142 37.500 0.00 0.00 0.00 3.24
3869 4722 4.213906 GCAATCAAACAACCCAAAATCCTG 59.786 41.667 0.00 0.00 0.00 3.86
3870 4723 5.367302 CAATCAAACAACCCAAAATCCTGT 58.633 37.500 0.00 0.00 0.00 4.00
3871 4724 6.520272 CAATCAAACAACCCAAAATCCTGTA 58.480 36.000 0.00 0.00 0.00 2.74
3872 4725 5.782893 TCAAACAACCCAAAATCCTGTAG 57.217 39.130 0.00 0.00 0.00 2.74
3873 4726 4.586841 TCAAACAACCCAAAATCCTGTAGG 59.413 41.667 0.00 0.00 0.00 3.18
3888 4741 6.813293 TCCTGTAGGATTGAAATCAGATGA 57.187 37.500 5.46 0.00 39.78 2.92
3889 4742 6.586344 TCCTGTAGGATTGAAATCAGATGAC 58.414 40.000 5.46 0.00 39.78 3.06
3890 4743 6.156775 TCCTGTAGGATTGAAATCAGATGACA 59.843 38.462 5.46 1.57 39.78 3.58
3891 4744 6.996879 CCTGTAGGATTGAAATCAGATGACAT 59.003 38.462 5.46 0.00 37.15 3.06
3892 4745 7.501559 CCTGTAGGATTGAAATCAGATGACATT 59.498 37.037 5.46 0.00 37.15 2.71
3893 4746 8.442632 TGTAGGATTGAAATCAGATGACATTC 57.557 34.615 5.46 4.17 37.15 2.67
3894 4747 6.956202 AGGATTGAAATCAGATGACATTCC 57.044 37.500 15.81 15.81 37.15 3.01
3895 4748 6.429151 AGGATTGAAATCAGATGACATTCCA 58.571 36.000 20.83 2.95 37.15 3.53
3896 4749 7.067421 AGGATTGAAATCAGATGACATTCCAT 58.933 34.615 20.83 6.41 37.15 3.41
3897 4750 7.230913 AGGATTGAAATCAGATGACATTCCATC 59.769 37.037 20.83 12.15 37.15 3.51
3898 4751 6.704289 TTGAAATCAGATGACATTCCATCC 57.296 37.500 0.00 0.00 42.89 3.51
3899 4752 6.009908 TGAAATCAGATGACATTCCATCCT 57.990 37.500 0.00 0.00 42.89 3.24
3900 4753 7.140522 TGAAATCAGATGACATTCCATCCTA 57.859 36.000 0.00 0.00 42.89 2.94
3901 4754 7.752638 TGAAATCAGATGACATTCCATCCTAT 58.247 34.615 0.00 0.00 42.89 2.57
3902 4755 7.664318 TGAAATCAGATGACATTCCATCCTATG 59.336 37.037 0.00 0.00 42.89 2.23
3903 4756 6.699242 ATCAGATGACATTCCATCCTATGT 57.301 37.500 0.00 0.00 42.89 2.29
3904 4757 6.505048 TCAGATGACATTCCATCCTATGTT 57.495 37.500 0.00 0.00 42.89 2.71
3905 4758 6.903516 TCAGATGACATTCCATCCTATGTTT 58.096 36.000 0.00 0.00 42.89 2.83
3906 4759 7.348815 TCAGATGACATTCCATCCTATGTTTT 58.651 34.615 0.00 0.00 42.89 2.43
3907 4760 7.835682 TCAGATGACATTCCATCCTATGTTTTT 59.164 33.333 0.00 0.00 42.89 1.94
3908 4761 8.133627 CAGATGACATTCCATCCTATGTTTTTC 58.866 37.037 0.00 0.00 42.89 2.29
3909 4762 6.773976 TGACATTCCATCCTATGTTTTTCC 57.226 37.500 0.00 0.00 35.24 3.13
3910 4763 6.493166 TGACATTCCATCCTATGTTTTTCCT 58.507 36.000 0.00 0.00 35.24 3.36
3911 4764 6.377996 TGACATTCCATCCTATGTTTTTCCTG 59.622 38.462 0.00 0.00 35.24 3.86
3912 4765 6.256053 ACATTCCATCCTATGTTTTTCCTGT 58.744 36.000 0.00 0.00 31.14 4.00
3913 4766 6.725834 ACATTCCATCCTATGTTTTTCCTGTT 59.274 34.615 0.00 0.00 31.14 3.16
3914 4767 6.834168 TTCCATCCTATGTTTTTCCTGTTC 57.166 37.500 0.00 0.00 0.00 3.18
3915 4768 5.261216 TCCATCCTATGTTTTTCCTGTTCC 58.739 41.667 0.00 0.00 0.00 3.62
3916 4769 4.402474 CCATCCTATGTTTTTCCTGTTCCC 59.598 45.833 0.00 0.00 0.00 3.97
3917 4770 3.681593 TCCTATGTTTTTCCTGTTCCCG 58.318 45.455 0.00 0.00 0.00 5.14
3918 4771 2.163613 CCTATGTTTTTCCTGTTCCCGC 59.836 50.000 0.00 0.00 0.00 6.13
3919 4772 0.596082 ATGTTTTTCCTGTTCCCGCG 59.404 50.000 0.00 0.00 0.00 6.46
3920 4773 0.748729 TGTTTTTCCTGTTCCCGCGT 60.749 50.000 4.92 0.00 0.00 6.01
3921 4774 0.382873 GTTTTTCCTGTTCCCGCGTT 59.617 50.000 4.92 0.00 0.00 4.84
3922 4775 1.104630 TTTTTCCTGTTCCCGCGTTT 58.895 45.000 4.92 0.00 0.00 3.60
3923 4776 1.104630 TTTTCCTGTTCCCGCGTTTT 58.895 45.000 4.92 0.00 0.00 2.43
3924 4777 1.104630 TTTCCTGTTCCCGCGTTTTT 58.895 45.000 4.92 0.00 0.00 1.94
3925 4778 1.964552 TTCCTGTTCCCGCGTTTTTA 58.035 45.000 4.92 0.00 0.00 1.52
3926 4779 2.188062 TCCTGTTCCCGCGTTTTTAT 57.812 45.000 4.92 0.00 0.00 1.40
3927 4780 3.331478 TCCTGTTCCCGCGTTTTTATA 57.669 42.857 4.92 0.00 0.00 0.98
3928 4781 3.672808 TCCTGTTCCCGCGTTTTTATAA 58.327 40.909 4.92 0.00 0.00 0.98
3929 4782 3.436359 TCCTGTTCCCGCGTTTTTATAAC 59.564 43.478 4.92 0.00 0.00 1.89
3930 4783 3.426560 CCTGTTCCCGCGTTTTTATAACC 60.427 47.826 4.92 0.00 0.00 2.85
3931 4784 2.487372 TGTTCCCGCGTTTTTATAACCC 59.513 45.455 4.92 0.00 0.00 4.11
3932 4785 2.749076 GTTCCCGCGTTTTTATAACCCT 59.251 45.455 4.92 0.00 0.00 4.34
3933 4786 2.358015 TCCCGCGTTTTTATAACCCTG 58.642 47.619 4.92 0.00 0.00 4.45
3934 4787 1.202211 CCCGCGTTTTTATAACCCTGC 60.202 52.381 4.92 0.00 0.00 4.85
3935 4788 1.530236 CCGCGTTTTTATAACCCTGCG 60.530 52.381 4.92 12.04 43.55 5.18
3936 4789 1.394227 CGCGTTTTTATAACCCTGCGA 59.606 47.619 13.17 0.00 46.52 5.10
3937 4790 2.159680 CGCGTTTTTATAACCCTGCGAA 60.160 45.455 13.17 0.00 46.52 4.70
3938 4791 3.486209 CGCGTTTTTATAACCCTGCGAAT 60.486 43.478 13.17 0.00 46.52 3.34
3939 4792 4.033019 GCGTTTTTATAACCCTGCGAATC 58.967 43.478 0.00 0.00 0.00 2.52
3940 4793 4.437659 GCGTTTTTATAACCCTGCGAATCA 60.438 41.667 0.00 0.00 0.00 2.57
3941 4794 5.632959 CGTTTTTATAACCCTGCGAATCAA 58.367 37.500 0.00 0.00 0.00 2.57
3942 4795 6.087522 CGTTTTTATAACCCTGCGAATCAAA 58.912 36.000 0.00 0.00 0.00 2.69
3943 4796 6.250527 CGTTTTTATAACCCTGCGAATCAAAG 59.749 38.462 0.00 0.00 0.00 2.77
3944 4797 7.309920 GTTTTTATAACCCTGCGAATCAAAGA 58.690 34.615 0.00 0.00 0.00 2.52
3945 4798 6.677781 TTTATAACCCTGCGAATCAAAGAG 57.322 37.500 0.00 0.00 0.00 2.85
3946 4799 1.826385 AACCCTGCGAATCAAAGAGG 58.174 50.000 0.00 0.00 0.00 3.69
3947 4800 0.678048 ACCCTGCGAATCAAAGAGGC 60.678 55.000 0.00 0.00 0.00 4.70
3948 4801 1.379642 CCCTGCGAATCAAAGAGGCC 61.380 60.000 0.00 0.00 0.00 5.19
3949 4802 1.379642 CCTGCGAATCAAAGAGGCCC 61.380 60.000 0.00 0.00 0.00 5.80
3950 4803 0.393537 CTGCGAATCAAAGAGGCCCT 60.394 55.000 0.00 0.00 0.00 5.19
3951 4804 0.038166 TGCGAATCAAAGAGGCCCTT 59.962 50.000 0.00 0.00 36.47 3.95
3952 4805 1.280710 TGCGAATCAAAGAGGCCCTTA 59.719 47.619 0.00 0.00 34.00 2.69
3953 4806 1.943340 GCGAATCAAAGAGGCCCTTAG 59.057 52.381 0.00 0.00 34.00 2.18
4075 4928 1.586541 CAGTAGCGAGTCCAGTGCA 59.413 57.895 0.00 0.00 0.00 4.57
4077 4930 1.179174 AGTAGCGAGTCCAGTGCACA 61.179 55.000 21.04 0.00 0.00 4.57
4081 4934 0.389817 GCGAGTCCAGTGCACACATA 60.390 55.000 21.04 0.00 0.00 2.29
4089 4942 2.951642 CCAGTGCACACATATTTAGGGG 59.048 50.000 21.04 0.00 0.00 4.79
4145 4998 5.663106 AGTCTATCTGGTAGCAGGAAATTGA 59.337 40.000 21.22 11.14 0.00 2.57
4151 5004 2.689983 GGTAGCAGGAAATTGATGGTGG 59.310 50.000 0.00 0.00 0.00 4.61
4180 5033 7.226325 CAGCAGTTCAGGATAATTAGGAAAGAG 59.774 40.741 0.00 0.00 0.00 2.85
4215 5068 7.317722 ACTTGAATTAGTTCCCAGTTAGTCT 57.682 36.000 0.00 0.00 33.26 3.24
4219 5072 7.386851 TGAATTAGTTCCCAGTTAGTCTCAAG 58.613 38.462 0.00 0.00 33.26 3.02
4225 5078 6.726764 AGTTCCCAGTTAGTCTCAAGTCTTAT 59.273 38.462 0.00 0.00 0.00 1.73
4249 5102 5.601313 TGGGATCAGATTAGGTGGTAGTTAC 59.399 44.000 0.00 0.00 0.00 2.50
4271 5124 8.686334 GTTACCCTGATGTGAACAATATTCAAT 58.314 33.333 0.00 0.00 0.00 2.57
4326 5182 9.398538 ACCGTTATGTGGTATGTTATAATTGTT 57.601 29.630 0.00 0.00 38.15 2.83
4379 5235 2.668457 GGCTACAGAAATGTGACAGACG 59.332 50.000 0.00 0.00 0.00 4.18
4406 5262 5.968848 GCTGTTACGATGAAACAAAGAACAA 59.031 36.000 0.00 0.00 36.46 2.83
4434 5290 7.485277 CACAACATGCAACATTTTGTGAAATTT 59.515 29.630 24.78 0.00 46.53 1.82
4450 5306 5.409826 GTGAAATTTGGTCTGAGGACTACAG 59.590 44.000 0.00 0.00 41.82 2.74
4650 5506 7.042335 CCTTTCTTCAGGTACGTCTTATCATT 58.958 38.462 0.00 0.00 0.00 2.57
4847 5709 6.161381 GTCTTGAAGTCTTTATAACCGTCCA 58.839 40.000 0.00 0.00 0.00 4.02
4946 5808 6.853872 CGACTGCTTAGTGTATGATCTTACTC 59.146 42.308 17.02 13.99 0.00 2.59
4949 5811 4.918583 GCTTAGTGTATGATCTTACTCGGC 59.081 45.833 17.02 15.24 0.00 5.54
4957 5819 0.613260 ATCTTACTCGGCAAGGCACA 59.387 50.000 0.00 0.00 0.00 4.57
5116 5984 0.600057 GGCTTTCAGGTTGGCTCAAG 59.400 55.000 0.00 0.00 0.00 3.02
5218 6086 8.618702 ATCTATCTCACTGGCATTTTCTATTG 57.381 34.615 0.00 0.00 0.00 1.90
5461 6331 3.769739 AAGTTCTGTAGTGTGCATGGA 57.230 42.857 0.00 0.00 0.00 3.41
5499 6369 4.331717 GGATGCATGAAAAATGCTCCTTTG 59.668 41.667 2.46 0.00 44.79 2.77
5551 6421 3.098377 TGGCACCACATATTTGCTCAAT 58.902 40.909 0.00 0.00 36.46 2.57
5797 6775 3.173151 TGGAACATCTGTAAGCTCTCCA 58.827 45.455 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
79 80 1.929806 ATGTGCATGTTCGCTGGCAG 61.930 55.000 10.94 10.94 36.86 4.85
135 136 6.995686 ACCTAATGTGTTGTGAGTATGTTTCA 59.004 34.615 0.00 0.00 0.00 2.69
136 137 7.435068 ACCTAATGTGTTGTGAGTATGTTTC 57.565 36.000 0.00 0.00 0.00 2.78
146 147 6.644592 CCCATTTTGTAACCTAATGTGTTGTG 59.355 38.462 0.00 0.00 0.00 3.33
191 195 3.412386 AGTGGAGAACATGGTGCTTAAC 58.588 45.455 0.00 0.00 0.00 2.01
265 317 0.754957 TGGTTGAGGGTTGGCTGTTG 60.755 55.000 0.00 0.00 0.00 3.33
271 323 2.755103 GCTATTTCTGGTTGAGGGTTGG 59.245 50.000 0.00 0.00 0.00 3.77
348 403 4.040829 TCAGATCAACCTTCAGAGCTTGAA 59.959 41.667 9.84 9.84 43.40 2.69
373 428 3.408634 CTGACGTTAGGGTTGGTTTCAT 58.591 45.455 0.00 0.00 0.00 2.57
383 438 4.007659 AGTAAATTTGGCTGACGTTAGGG 58.992 43.478 9.62 0.00 0.00 3.53
621 677 1.883732 CCTCGTCTCCTTCTGCGAA 59.116 57.895 0.00 0.00 32.84 4.70
794 858 4.056097 GCAAAGTGCAATACGCCG 57.944 55.556 0.00 0.00 44.26 6.46
803 867 0.319813 GGGTCCATGTTGCAAAGTGC 60.320 55.000 0.00 0.00 45.29 4.40
814 878 1.000506 CCGTATAACTCGGGGTCCATG 59.999 57.143 0.00 0.00 43.68 3.66
815 879 1.335145 CCGTATAACTCGGGGTCCAT 58.665 55.000 0.00 0.00 43.68 3.41
834 898 2.422479 GGAGACCCCTTCGTTTATTTGC 59.578 50.000 0.00 0.00 0.00 3.68
884 955 8.803235 AGGACCTTTCTGTAAATTGGATAAAAC 58.197 33.333 0.00 0.00 0.00 2.43
892 963 5.629079 GGTGAGGACCTTTCTGTAAATTG 57.371 43.478 0.00 0.00 39.47 2.32
910 981 1.335132 GCCTCGTGGGGATAAGGTGA 61.335 60.000 5.54 0.00 35.12 4.02
938 1017 2.269241 GGGGAAGGAAGCCTCACG 59.731 66.667 0.00 0.00 30.89 4.35
939 1018 1.301293 CTGGGGAAGGAAGCCTCAC 59.699 63.158 0.00 0.00 31.22 3.51
941 1020 2.273776 GCTGGGGAAGGAAGCCTC 59.726 66.667 0.00 0.00 30.89 4.70
942 1021 3.721706 CGCTGGGGAAGGAAGCCT 61.722 66.667 0.00 0.00 33.24 4.58
943 1022 3.689002 CTCGCTGGGGAAGGAAGCC 62.689 68.421 0.00 0.00 33.24 4.35
944 1023 2.124942 CTCGCTGGGGAAGGAAGC 60.125 66.667 0.00 0.00 0.00 3.86
945 1024 2.124942 GCTCGCTGGGGAAGGAAG 60.125 66.667 0.00 0.00 0.00 3.46
946 1025 2.927856 TGCTCGCTGGGGAAGGAA 60.928 61.111 0.00 0.00 0.00 3.36
947 1026 3.393970 CTGCTCGCTGGGGAAGGA 61.394 66.667 0.00 0.00 0.00 3.36
948 1027 3.382803 CTCTGCTCGCTGGGGAAGG 62.383 68.421 0.00 0.00 0.00 3.46
989 1068 3.420482 AGGCCATCGGAAAGGGGG 61.420 66.667 5.01 0.00 0.00 5.40
1246 1326 2.607892 GGCGGCGCATCACCTTATC 61.608 63.158 34.36 8.04 0.00 1.75
1262 1342 0.248784 GCATCAAGAAATGGAGCGGC 60.249 55.000 0.00 0.00 0.00 6.53
1359 1467 5.099575 GGACGTGTTTCAAATTTCAACACT 58.900 37.500 26.04 18.49 45.40 3.55
1409 2148 3.949754 AGATTGATGTTTCACCGATGCAT 59.050 39.130 0.00 0.00 0.00 3.96
1415 2154 4.094739 TGCACATAGATTGATGTTTCACCG 59.905 41.667 0.00 0.00 37.99 4.94
1422 2161 7.734924 AATATCGTTGCACATAGATTGATGT 57.265 32.000 0.00 0.00 40.78 3.06
1423 2162 9.911980 GATAATATCGTTGCACATAGATTGATG 57.088 33.333 0.00 0.00 0.00 3.07
1492 2231 1.742268 GACAAGATCAGAAAGGCAGGC 59.258 52.381 0.00 0.00 0.00 4.85
1497 2236 3.008330 CAGCAGGACAAGATCAGAAAGG 58.992 50.000 0.00 0.00 0.00 3.11
1511 2250 2.233186 CAGAGTCTGATTGTCAGCAGGA 59.767 50.000 15.46 0.00 43.95 3.86
1530 2269 4.793216 GCTTACATCCAAATAACGCAACAG 59.207 41.667 0.00 0.00 0.00 3.16
1597 2336 0.385390 CAACAGTTTGCCACTCCCAC 59.615 55.000 0.00 0.00 30.92 4.61
1691 2430 5.009310 CACAACCAGCATGCATATACAAGAT 59.991 40.000 21.98 0.00 31.97 2.40
1692 2431 4.336153 CACAACCAGCATGCATATACAAGA 59.664 41.667 21.98 0.00 31.97 3.02
1693 2432 4.498513 CCACAACCAGCATGCATATACAAG 60.499 45.833 21.98 4.23 31.97 3.16
1711 2450 2.897271 ATAGGCATCACCAACCACAA 57.103 45.000 0.00 0.00 43.14 3.33
1740 2479 6.262496 GGATACTTTCTTAGGGTTAACATGCC 59.738 42.308 8.10 0.00 0.00 4.40
1741 2480 7.260558 GGATACTTTCTTAGGGTTAACATGC 57.739 40.000 8.10 0.00 0.00 4.06
1818 2560 3.189702 GCTGAAAACCCTACGTATTGCAA 59.810 43.478 0.00 0.00 0.00 4.08
1842 2584 1.971357 CTCATCTATAGTTGCCCCCGT 59.029 52.381 6.00 0.00 0.00 5.28
1922 2664 5.419788 TCCTTTCGTATGTACACACTACCAT 59.580 40.000 2.29 0.00 0.00 3.55
1952 2694 8.949177 AGAATTGAATATTTTGAAATGGGCAAC 58.051 29.630 0.00 0.00 0.00 4.17
2311 3054 5.129815 ACAGTGTCAACTTACTTCCTACCAA 59.870 40.000 0.00 0.00 32.98 3.67
2314 3057 5.598769 ACACAGTGTCAACTTACTTCCTAC 58.401 41.667 0.00 0.00 32.98 3.18
2359 3102 7.380065 GTCAACTTACTTCAACAACAACAACAA 59.620 33.333 0.00 0.00 0.00 2.83
2360 3103 6.858993 GTCAACTTACTTCAACAACAACAACA 59.141 34.615 0.00 0.00 0.00 3.33
2361 3104 6.858993 TGTCAACTTACTTCAACAACAACAAC 59.141 34.615 0.00 0.00 0.00 3.32
2362 3105 6.971602 TGTCAACTTACTTCAACAACAACAA 58.028 32.000 0.00 0.00 0.00 2.83
2560 3303 6.195165 CACAAGAAAAGTCTGTCTGCTAAAC 58.805 40.000 0.00 0.00 33.05 2.01
2595 3338 5.410355 AGTGTAAGGAGCAACGGTTAATA 57.590 39.130 0.00 0.00 0.00 0.98
2696 3482 8.998377 GTCCAACAAAATGCTTTATTTACCATT 58.002 29.630 0.00 0.00 38.01 3.16
2781 3567 8.561738 ACATAAAGATACGTCAAAAGATTGGT 57.438 30.769 0.00 0.00 37.15 3.67
3100 3952 7.126268 TCAGTAGTCATGTAGTAGTACCCACTA 59.874 40.741 5.26 6.01 36.14 2.74
3101 3953 6.069789 TCAGTAGTCATGTAGTAGTACCCACT 60.070 42.308 5.26 6.85 38.91 4.00
3102 3954 6.118170 TCAGTAGTCATGTAGTAGTACCCAC 58.882 44.000 5.26 0.00 0.00 4.61
3103 3955 6.317663 TCAGTAGTCATGTAGTAGTACCCA 57.682 41.667 5.26 0.00 0.00 4.51
3104 3956 7.225725 AGATCAGTAGTCATGTAGTAGTACCC 58.774 42.308 5.26 0.00 0.00 3.69
3185 4037 4.774124 TGAGAGTTGATGAGCCAATTAGG 58.226 43.478 0.00 0.00 41.84 2.69
3321 4174 5.499004 TTGGTGCTAGAACTCCAGTTATT 57.501 39.130 0.00 0.00 38.56 1.40
3324 4177 4.042187 AGAATTGGTGCTAGAACTCCAGTT 59.958 41.667 0.00 0.36 41.64 3.16
3467 4320 4.172807 TGGAGTAGGAAACCTGTACCAAT 58.827 43.478 0.00 0.00 34.61 3.16
3528 4381 4.706476 GGGAATTGATCAGGTGTCAAATGA 59.294 41.667 0.00 0.00 38.89 2.57
3716 4569 9.513906 TCAATCCTATGAATCAAACAACTAACA 57.486 29.630 0.00 0.00 0.00 2.41
3748 4601 9.035890 AAAGAAATCCTTAGGAAAAATTCCGAT 57.964 29.630 4.56 0.00 43.90 4.18
3749 4602 8.417273 AAAGAAATCCTTAGGAAAAATTCCGA 57.583 30.769 4.56 0.00 43.90 4.55
3750 4603 8.523658 AGAAAGAAATCCTTAGGAAAAATTCCG 58.476 33.333 4.56 0.00 43.90 4.30
3756 4609 9.955102 GGTAGTAGAAAGAAATCCTTAGGAAAA 57.045 33.333 4.56 0.00 34.34 2.29
3757 4610 9.335211 AGGTAGTAGAAAGAAATCCTTAGGAAA 57.665 33.333 4.56 0.00 34.34 3.13
3758 4611 8.912614 AGGTAGTAGAAAGAAATCCTTAGGAA 57.087 34.615 4.56 0.00 34.34 3.36
3759 4612 7.564292 GGAGGTAGTAGAAAGAAATCCTTAGGA 59.436 40.741 2.37 2.37 34.00 2.94
3760 4613 7.202020 GGGAGGTAGTAGAAAGAAATCCTTAGG 60.202 44.444 0.00 0.00 34.00 2.69
3761 4614 7.344871 TGGGAGGTAGTAGAAAGAAATCCTTAG 59.655 40.741 0.00 0.00 34.00 2.18
3762 4615 7.194050 TGGGAGGTAGTAGAAAGAAATCCTTA 58.806 38.462 0.00 0.00 34.00 2.69
3763 4616 6.030082 TGGGAGGTAGTAGAAAGAAATCCTT 58.970 40.000 0.00 0.00 36.47 3.36
3764 4617 5.600749 TGGGAGGTAGTAGAAAGAAATCCT 58.399 41.667 0.00 0.00 0.00 3.24
3765 4618 5.952347 TGGGAGGTAGTAGAAAGAAATCC 57.048 43.478 0.00 0.00 0.00 3.01
3766 4619 7.509659 TCCTATGGGAGGTAGTAGAAAGAAATC 59.490 40.741 0.00 0.00 46.76 2.17
3767 4620 7.371043 TCCTATGGGAGGTAGTAGAAAGAAAT 58.629 38.462 0.00 0.00 46.76 2.17
3768 4621 6.748969 TCCTATGGGAGGTAGTAGAAAGAAA 58.251 40.000 0.00 0.00 46.76 2.52
3769 4622 6.351317 TCCTATGGGAGGTAGTAGAAAGAA 57.649 41.667 0.00 0.00 46.76 2.52
3770 4623 6.547396 ATCCTATGGGAGGTAGTAGAAAGA 57.453 41.667 3.45 0.00 46.76 2.52
3771 4624 7.511028 AGAAATCCTATGGGAGGTAGTAGAAAG 59.489 40.741 3.45 0.00 46.76 2.62
3772 4625 7.371043 AGAAATCCTATGGGAGGTAGTAGAAA 58.629 38.462 3.45 0.00 46.76 2.52
3773 4626 6.935036 AGAAATCCTATGGGAGGTAGTAGAA 58.065 40.000 3.45 0.00 46.76 2.10
3774 4627 6.547396 AGAAATCCTATGGGAGGTAGTAGA 57.453 41.667 3.45 0.00 46.76 2.59
3775 4628 6.378848 GCTAGAAATCCTATGGGAGGTAGTAG 59.621 46.154 3.45 2.49 46.76 2.57
3776 4629 6.183361 TGCTAGAAATCCTATGGGAGGTAGTA 60.183 42.308 3.45 0.00 46.76 1.82
3777 4630 5.088026 GCTAGAAATCCTATGGGAGGTAGT 58.912 45.833 3.45 0.00 46.76 2.73
3778 4631 5.087323 TGCTAGAAATCCTATGGGAGGTAG 58.913 45.833 3.45 3.16 46.76 3.18
3779 4632 5.087923 TGCTAGAAATCCTATGGGAGGTA 57.912 43.478 3.45 0.00 46.76 3.08
3780 4633 3.941629 TGCTAGAAATCCTATGGGAGGT 58.058 45.455 3.45 0.00 46.76 3.85
3781 4634 4.080638 GGATGCTAGAAATCCTATGGGAGG 60.081 50.000 14.65 0.00 45.86 4.30
3782 4635 4.533707 TGGATGCTAGAAATCCTATGGGAG 59.466 45.833 19.93 0.00 45.86 4.30
3783 4636 4.287067 GTGGATGCTAGAAATCCTATGGGA 59.713 45.833 19.93 0.00 43.52 4.37
3784 4637 4.288105 AGTGGATGCTAGAAATCCTATGGG 59.712 45.833 19.93 0.00 43.52 4.00
3785 4638 5.012458 TGAGTGGATGCTAGAAATCCTATGG 59.988 44.000 19.93 0.00 43.52 2.74
3786 4639 6.106648 TGAGTGGATGCTAGAAATCCTATG 57.893 41.667 19.93 0.00 43.52 2.23
3787 4640 6.753913 TTGAGTGGATGCTAGAAATCCTAT 57.246 37.500 19.93 11.75 43.52 2.57
3788 4641 6.349300 GTTTGAGTGGATGCTAGAAATCCTA 58.651 40.000 19.93 8.67 43.52 2.94
3789 4642 5.189180 GTTTGAGTGGATGCTAGAAATCCT 58.811 41.667 19.93 6.45 43.52 3.24
3790 4643 4.336713 GGTTTGAGTGGATGCTAGAAATCC 59.663 45.833 14.93 14.93 43.44 3.01
3791 4644 5.189180 AGGTTTGAGTGGATGCTAGAAATC 58.811 41.667 0.00 0.00 0.00 2.17
3792 4645 5.045286 AGAGGTTTGAGTGGATGCTAGAAAT 60.045 40.000 0.00 0.00 0.00 2.17
3793 4646 4.287067 AGAGGTTTGAGTGGATGCTAGAAA 59.713 41.667 0.00 0.00 0.00 2.52
3794 4647 3.840666 AGAGGTTTGAGTGGATGCTAGAA 59.159 43.478 0.00 0.00 0.00 2.10
3795 4648 3.445008 AGAGGTTTGAGTGGATGCTAGA 58.555 45.455 0.00 0.00 0.00 2.43
3796 4649 3.902881 AGAGGTTTGAGTGGATGCTAG 57.097 47.619 0.00 0.00 0.00 3.42
3797 4650 4.041567 TCAAAGAGGTTTGAGTGGATGCTA 59.958 41.667 0.00 0.00 45.82 3.49
3798 4651 3.152341 CAAAGAGGTTTGAGTGGATGCT 58.848 45.455 0.00 0.00 45.22 3.79
3799 4652 3.149196 TCAAAGAGGTTTGAGTGGATGC 58.851 45.455 0.00 0.00 45.82 3.91
3808 4661 7.267857 ACAAAGGATTCTTTCAAAGAGGTTTG 58.732 34.615 16.46 16.46 40.92 2.93
3809 4662 7.423844 ACAAAGGATTCTTTCAAAGAGGTTT 57.576 32.000 0.00 0.00 40.92 3.27
3810 4663 7.423844 AACAAAGGATTCTTTCAAAGAGGTT 57.576 32.000 0.00 0.00 40.92 3.50
3811 4664 7.423844 AAACAAAGGATTCTTTCAAAGAGGT 57.576 32.000 0.00 0.00 40.92 3.85
3812 4665 8.722480 AAAAACAAAGGATTCTTTCAAAGAGG 57.278 30.769 0.00 0.00 40.92 3.69
3834 4687 7.416022 GGTTGTTTGATTGCATCATTGAAAAA 58.584 30.769 0.00 0.00 39.39 1.94
3835 4688 6.017275 GGGTTGTTTGATTGCATCATTGAAAA 60.017 34.615 0.00 0.00 39.39 2.29
3836 4689 5.469421 GGGTTGTTTGATTGCATCATTGAAA 59.531 36.000 0.00 0.00 39.39 2.69
3837 4690 4.996122 GGGTTGTTTGATTGCATCATTGAA 59.004 37.500 0.00 0.00 39.39 2.69
3838 4691 4.040095 TGGGTTGTTTGATTGCATCATTGA 59.960 37.500 0.00 0.00 39.39 2.57
3839 4692 4.316645 TGGGTTGTTTGATTGCATCATTG 58.683 39.130 0.00 0.00 39.39 2.82
3840 4693 4.620589 TGGGTTGTTTGATTGCATCATT 57.379 36.364 0.00 0.00 39.39 2.57
3841 4694 4.620589 TTGGGTTGTTTGATTGCATCAT 57.379 36.364 0.00 0.00 39.39 2.45
3842 4695 4.412796 TTTGGGTTGTTTGATTGCATCA 57.587 36.364 0.00 0.00 37.55 3.07
3843 4696 5.106594 GGATTTTGGGTTGTTTGATTGCATC 60.107 40.000 0.00 0.00 0.00 3.91
3844 4697 4.761227 GGATTTTGGGTTGTTTGATTGCAT 59.239 37.500 0.00 0.00 0.00 3.96
3845 4698 4.133078 GGATTTTGGGTTGTTTGATTGCA 58.867 39.130 0.00 0.00 0.00 4.08
3846 4699 4.213906 CAGGATTTTGGGTTGTTTGATTGC 59.786 41.667 0.00 0.00 0.00 3.56
3847 4700 5.367302 ACAGGATTTTGGGTTGTTTGATTG 58.633 37.500 0.00 0.00 0.00 2.67
3848 4701 5.628797 ACAGGATTTTGGGTTGTTTGATT 57.371 34.783 0.00 0.00 0.00 2.57
3849 4702 5.245977 CCTACAGGATTTTGGGTTGTTTGAT 59.754 40.000 0.00 0.00 37.39 2.57
3850 4703 4.586841 CCTACAGGATTTTGGGTTGTTTGA 59.413 41.667 0.00 0.00 37.39 2.69
3851 4704 4.586841 TCCTACAGGATTTTGGGTTGTTTG 59.413 41.667 0.00 0.00 39.78 2.93
3852 4705 4.810345 TCCTACAGGATTTTGGGTTGTTT 58.190 39.130 0.00 0.00 39.78 2.83
3853 4706 4.463050 TCCTACAGGATTTTGGGTTGTT 57.537 40.909 0.00 0.00 39.78 2.83
3866 4719 6.351711 TGTCATCTGATTTCAATCCTACAGG 58.648 40.000 0.00 0.00 34.50 4.00
3867 4720 8.447924 AATGTCATCTGATTTCAATCCTACAG 57.552 34.615 0.00 0.00 34.50 2.74
3868 4721 7.500227 GGAATGTCATCTGATTTCAATCCTACA 59.500 37.037 13.92 0.00 34.50 2.74
3869 4722 7.500227 TGGAATGTCATCTGATTTCAATCCTAC 59.500 37.037 18.42 3.28 34.50 3.18
3870 4723 7.576403 TGGAATGTCATCTGATTTCAATCCTA 58.424 34.615 18.42 8.94 34.50 2.94
3871 4724 6.429151 TGGAATGTCATCTGATTTCAATCCT 58.571 36.000 18.42 0.26 34.50 3.24
3872 4725 6.704289 TGGAATGTCATCTGATTTCAATCC 57.296 37.500 14.15 14.15 34.50 3.01
3873 4726 7.230913 AGGATGGAATGTCATCTGATTTCAATC 59.769 37.037 7.98 7.98 42.22 2.67
3874 4727 7.067421 AGGATGGAATGTCATCTGATTTCAAT 58.933 34.615 8.01 0.00 42.22 2.57
3875 4728 6.429151 AGGATGGAATGTCATCTGATTTCAA 58.571 36.000 8.01 0.00 42.22 2.69
3876 4729 6.009908 AGGATGGAATGTCATCTGATTTCA 57.990 37.500 8.01 0.00 42.22 2.69
3877 4730 7.664731 ACATAGGATGGAATGTCATCTGATTTC 59.335 37.037 8.01 0.00 42.22 2.17
3878 4731 7.524290 ACATAGGATGGAATGTCATCTGATTT 58.476 34.615 8.01 0.00 42.22 2.17
3879 4732 7.087895 ACATAGGATGGAATGTCATCTGATT 57.912 36.000 8.01 0.00 42.22 2.57
3880 4733 6.699242 ACATAGGATGGAATGTCATCTGAT 57.301 37.500 8.01 0.00 42.22 2.90
3881 4734 6.505048 AACATAGGATGGAATGTCATCTGA 57.495 37.500 8.01 0.00 42.22 3.27
3882 4735 7.578310 AAAACATAGGATGGAATGTCATCTG 57.422 36.000 8.01 3.09 42.22 2.90
3883 4736 7.286316 GGAAAAACATAGGATGGAATGTCATCT 59.714 37.037 8.01 0.00 42.22 2.90
3884 4737 7.286316 AGGAAAAACATAGGATGGAATGTCATC 59.714 37.037 0.00 0.00 41.93 2.92
3885 4738 7.069085 CAGGAAAAACATAGGATGGAATGTCAT 59.931 37.037 0.00 0.00 35.30 3.06
3886 4739 6.377996 CAGGAAAAACATAGGATGGAATGTCA 59.622 38.462 0.00 0.00 35.30 3.58
3887 4740 6.378280 ACAGGAAAAACATAGGATGGAATGTC 59.622 38.462 0.00 0.00 35.30 3.06
3888 4741 6.256053 ACAGGAAAAACATAGGATGGAATGT 58.744 36.000 0.00 0.00 37.94 2.71
3889 4742 6.780457 ACAGGAAAAACATAGGATGGAATG 57.220 37.500 0.00 0.00 33.60 2.67
3890 4743 6.381133 GGAACAGGAAAAACATAGGATGGAAT 59.619 38.462 0.00 0.00 33.60 3.01
3891 4744 5.714806 GGAACAGGAAAAACATAGGATGGAA 59.285 40.000 0.00 0.00 33.60 3.53
3892 4745 5.261216 GGAACAGGAAAAACATAGGATGGA 58.739 41.667 0.00 0.00 33.60 3.41
3893 4746 4.402474 GGGAACAGGAAAAACATAGGATGG 59.598 45.833 0.00 0.00 33.60 3.51
3894 4747 4.096382 CGGGAACAGGAAAAACATAGGATG 59.904 45.833 0.00 0.00 0.00 3.51
3895 4748 4.270008 CGGGAACAGGAAAAACATAGGAT 58.730 43.478 0.00 0.00 0.00 3.24
3896 4749 3.681593 CGGGAACAGGAAAAACATAGGA 58.318 45.455 0.00 0.00 0.00 2.94
3897 4750 2.163613 GCGGGAACAGGAAAAACATAGG 59.836 50.000 0.00 0.00 0.00 2.57
3898 4751 2.159572 CGCGGGAACAGGAAAAACATAG 60.160 50.000 0.00 0.00 0.00 2.23
3899 4752 1.807742 CGCGGGAACAGGAAAAACATA 59.192 47.619 0.00 0.00 0.00 2.29
3900 4753 0.596082 CGCGGGAACAGGAAAAACAT 59.404 50.000 0.00 0.00 0.00 2.71
3901 4754 0.748729 ACGCGGGAACAGGAAAAACA 60.749 50.000 12.47 0.00 0.00 2.83
3902 4755 0.382873 AACGCGGGAACAGGAAAAAC 59.617 50.000 12.47 0.00 0.00 2.43
3903 4756 1.104630 AAACGCGGGAACAGGAAAAA 58.895 45.000 12.47 0.00 0.00 1.94
3904 4757 1.104630 AAAACGCGGGAACAGGAAAA 58.895 45.000 12.47 0.00 0.00 2.29
3905 4758 1.104630 AAAAACGCGGGAACAGGAAA 58.895 45.000 12.47 0.00 0.00 3.13
3906 4759 1.964552 TAAAAACGCGGGAACAGGAA 58.035 45.000 12.47 0.00 0.00 3.36
3907 4760 2.188062 ATAAAAACGCGGGAACAGGA 57.812 45.000 12.47 0.00 0.00 3.86
3908 4761 3.426560 GGTTATAAAAACGCGGGAACAGG 60.427 47.826 12.47 0.00 0.00 4.00
3909 4762 3.426560 GGGTTATAAAAACGCGGGAACAG 60.427 47.826 12.47 0.00 0.00 3.16
3910 4763 2.487372 GGGTTATAAAAACGCGGGAACA 59.513 45.455 12.47 0.00 0.00 3.18
3911 4764 2.749076 AGGGTTATAAAAACGCGGGAAC 59.251 45.455 12.47 3.38 38.03 3.62
3912 4765 2.748532 CAGGGTTATAAAAACGCGGGAA 59.251 45.455 12.47 0.00 38.03 3.97
3913 4766 2.358015 CAGGGTTATAAAAACGCGGGA 58.642 47.619 12.47 0.00 38.03 5.14
3914 4767 1.202211 GCAGGGTTATAAAAACGCGGG 60.202 52.381 12.47 0.00 38.03 6.13
3915 4768 1.530236 CGCAGGGTTATAAAAACGCGG 60.530 52.381 12.47 0.00 37.94 6.46
3916 4769 1.394227 TCGCAGGGTTATAAAAACGCG 59.606 47.619 3.53 3.53 42.62 6.01
3917 4770 3.474693 TTCGCAGGGTTATAAAAACGC 57.525 42.857 0.00 0.00 0.00 4.84
3918 4771 5.224562 TGATTCGCAGGGTTATAAAAACG 57.775 39.130 0.00 0.00 0.00 3.60
3919 4772 7.309920 TCTTTGATTCGCAGGGTTATAAAAAC 58.690 34.615 0.00 0.00 0.00 2.43
3920 4773 7.362574 CCTCTTTGATTCGCAGGGTTATAAAAA 60.363 37.037 0.00 0.00 0.00 1.94
3921 4774 6.094881 CCTCTTTGATTCGCAGGGTTATAAAA 59.905 38.462 0.00 0.00 0.00 1.52
3922 4775 5.588648 CCTCTTTGATTCGCAGGGTTATAAA 59.411 40.000 0.00 0.00 0.00 1.40
3923 4776 5.123227 CCTCTTTGATTCGCAGGGTTATAA 58.877 41.667 0.00 0.00 0.00 0.98
3924 4777 4.703897 CCTCTTTGATTCGCAGGGTTATA 58.296 43.478 0.00 0.00 0.00 0.98
3925 4778 3.545703 CCTCTTTGATTCGCAGGGTTAT 58.454 45.455 0.00 0.00 0.00 1.89
3926 4779 2.939640 GCCTCTTTGATTCGCAGGGTTA 60.940 50.000 0.00 0.00 0.00 2.85
3927 4780 1.826385 CCTCTTTGATTCGCAGGGTT 58.174 50.000 0.00 0.00 0.00 4.11
3928 4781 0.678048 GCCTCTTTGATTCGCAGGGT 60.678 55.000 0.00 0.00 0.00 4.34
3929 4782 1.379642 GGCCTCTTTGATTCGCAGGG 61.380 60.000 0.00 0.00 0.00 4.45
3930 4783 1.379642 GGGCCTCTTTGATTCGCAGG 61.380 60.000 0.84 0.00 0.00 4.85
3931 4784 0.393537 AGGGCCTCTTTGATTCGCAG 60.394 55.000 0.00 0.00 0.00 5.18
3932 4785 0.038166 AAGGGCCTCTTTGATTCGCA 59.962 50.000 6.46 0.00 29.99 5.10
3933 4786 1.943340 CTAAGGGCCTCTTTGATTCGC 59.057 52.381 6.46 0.00 36.93 4.70
3934 4787 3.268023 ACTAAGGGCCTCTTTGATTCG 57.732 47.619 6.46 0.00 36.93 3.34
3935 4788 3.129462 GCAACTAAGGGCCTCTTTGATTC 59.871 47.826 20.28 4.72 36.93 2.52
3936 4789 3.092301 GCAACTAAGGGCCTCTTTGATT 58.908 45.455 20.28 1.84 36.93 2.57
3937 4790 2.621668 GGCAACTAAGGGCCTCTTTGAT 60.622 50.000 20.28 2.52 46.74 2.57
3938 4791 1.271926 GGCAACTAAGGGCCTCTTTGA 60.272 52.381 20.28 0.16 46.74 2.69
3939 4792 1.177401 GGCAACTAAGGGCCTCTTTG 58.823 55.000 6.46 11.80 46.74 2.77
3940 4793 3.672066 GGCAACTAAGGGCCTCTTT 57.328 52.632 6.46 0.00 46.74 2.52
3945 4798 0.891904 TTTGTCGGCAACTAAGGGCC 60.892 55.000 0.00 0.00 46.80 5.80
3946 4799 0.240145 GTTTGTCGGCAACTAAGGGC 59.760 55.000 0.00 0.00 33.82 5.19
3947 4800 1.892209 AGTTTGTCGGCAACTAAGGG 58.108 50.000 0.00 0.00 33.82 3.95
3948 4801 3.628017 CAAAGTTTGTCGGCAACTAAGG 58.372 45.455 0.00 0.00 33.82 2.69
3949 4802 3.042887 GCAAAGTTTGTCGGCAACTAAG 58.957 45.455 16.70 1.37 33.82 2.18
3950 4803 2.223618 GGCAAAGTTTGTCGGCAACTAA 60.224 45.455 16.70 0.00 33.82 2.24
3951 4804 1.335496 GGCAAAGTTTGTCGGCAACTA 59.665 47.619 16.70 0.00 33.82 2.24
3952 4805 0.102300 GGCAAAGTTTGTCGGCAACT 59.898 50.000 16.70 0.00 33.82 3.16
3953 4806 0.179124 TGGCAAAGTTTGTCGGCAAC 60.179 50.000 15.10 0.00 38.34 4.17
4027 4880 2.807895 CATGCGCTGCTGGTTTGC 60.808 61.111 9.73 0.00 0.00 3.68
4075 4928 5.103940 ACATGAAGCTCCCCTAAATATGTGT 60.104 40.000 0.00 0.00 0.00 3.72
4077 4930 5.653255 ACATGAAGCTCCCCTAAATATGT 57.347 39.130 0.00 0.00 0.00 2.29
4081 4934 5.667626 TCTCTAACATGAAGCTCCCCTAAAT 59.332 40.000 0.00 0.00 0.00 1.40
4089 4942 6.704050 GGGACTTTATCTCTAACATGAAGCTC 59.296 42.308 0.00 0.00 0.00 4.09
4145 4998 2.036256 GAACTGCTGCCCCACCAT 59.964 61.111 0.00 0.00 0.00 3.55
4151 5004 2.355010 ATTATCCTGAACTGCTGCCC 57.645 50.000 0.00 0.00 0.00 5.36
4180 5033 8.366401 GGGAACTAATTCAAGTCCTATACTACC 58.634 40.741 0.00 0.00 37.50 3.18
4215 5068 6.846505 ACCTAATCTGATCCCATAAGACTTGA 59.153 38.462 0.00 0.00 0.00 3.02
4219 5072 5.308237 ACCACCTAATCTGATCCCATAAGAC 59.692 44.000 0.00 0.00 0.00 3.01
4225 5078 4.280789 ACTACCACCTAATCTGATCCCA 57.719 45.455 0.00 0.00 0.00 4.37
4249 5102 9.070179 TGATATTGAATATTGTTCACATCAGGG 57.930 33.333 12.09 0.00 31.70 4.45
4370 5226 1.714460 CGTAACAGCTTCGTCTGTCAC 59.286 52.381 7.84 4.12 45.77 3.67
4379 5235 5.985781 TCTTTGTTTCATCGTAACAGCTTC 58.014 37.500 0.00 0.00 36.89 3.86
4388 5244 4.142491 TGTGCTTGTTCTTTGTTTCATCGT 60.142 37.500 0.00 0.00 0.00 3.73
4406 5262 9.014816 ATTTCACAAAATGTTGCATGTTGTGCT 62.015 33.333 27.46 17.36 45.48 4.40
4429 5285 5.308237 AGACTGTAGTCCTCAGACCAAATTT 59.692 40.000 8.34 0.00 45.85 1.82
4434 5290 2.108425 ACAGACTGTAGTCCTCAGACCA 59.892 50.000 6.24 0.00 45.85 4.02
4450 5306 3.181475 TGAAGAAGACACCACTGACAGAC 60.181 47.826 10.08 0.00 0.00 3.51
4516 5372 0.031994 GCAACACCTGCGGAACATTT 59.968 50.000 0.00 0.00 42.37 2.32
4650 5506 5.069318 TCATCCAGCAAATTACTGACACAA 58.931 37.500 9.42 0.00 37.32 3.33
4722 5581 1.285962 ACATGAATTAGCTGCCCCTGT 59.714 47.619 0.00 0.00 0.00 4.00
4796 5658 5.129485 CCCCAATAGCTCCTTGATATCGTAT 59.871 44.000 9.85 0.00 0.00 3.06
4847 5709 7.340232 TCAAGGATATGCACAAAGCTAAAATCT 59.660 33.333 0.00 0.00 45.94 2.40
4946 5808 0.810648 ATACATTGTGTGCCTTGCCG 59.189 50.000 0.00 0.00 0.00 5.69
4949 5811 3.084039 AGACCATACATTGTGTGCCTTG 58.916 45.455 7.94 0.00 0.00 3.61
4957 5819 7.187824 AGACATCTTGTAGACCATACATTGT 57.812 36.000 0.00 0.00 0.00 2.71
5007 5869 4.565564 CGTAGGTTGGCAGTAGTATGAAAC 59.434 45.833 0.00 0.00 0.00 2.78
5116 5984 4.321230 CCACTTGCAAGGAAGAACCATTAC 60.321 45.833 29.18 0.00 42.04 1.89
5226 6094 6.306643 TCCATTCACACAGTACATCCATAA 57.693 37.500 0.00 0.00 0.00 1.90
5421 6291 4.944930 ACTTACATTGCACGGCCTAAATTA 59.055 37.500 0.00 0.00 0.00 1.40
5422 6292 3.761752 ACTTACATTGCACGGCCTAAATT 59.238 39.130 0.00 0.00 0.00 1.82
5423 6293 3.352648 ACTTACATTGCACGGCCTAAAT 58.647 40.909 0.00 0.00 0.00 1.40
5424 6294 2.785562 ACTTACATTGCACGGCCTAAA 58.214 42.857 0.00 0.00 0.00 1.85
5461 6331 7.172868 TCATGCATCCTCATAATTTGTTTGT 57.827 32.000 0.00 0.00 0.00 2.83
5551 6421 4.043561 TGCATTCCTTTTCCTACAACCCTA 59.956 41.667 0.00 0.00 0.00 3.53
5628 6498 7.553334 TGGTTAAATACGAGTCATTAGAGCTT 58.447 34.615 0.00 0.00 0.00 3.74
5797 6775 1.368579 GCAGCCAAAGTGTGCCATT 59.631 52.632 0.00 0.00 0.00 3.16
5805 6783 3.116079 CTGGAAATTTGCAGCCAAAGT 57.884 42.857 24.20 0.00 43.60 2.66


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.