Multiple sequence alignment - TraesCS5A01G226800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G226800 | chr5A | 100.000 | 4345 | 0 | 0 | 1 | 4345 | 442683367 | 442679023 | 0.000000e+00 | 8024.0 |
1 | TraesCS5A01G226800 | chr5A | 91.229 | 1505 | 117 | 7 | 1792 | 3292 | 442506054 | 442504561 | 0.000000e+00 | 2034.0 |
2 | TraesCS5A01G226800 | chr5A | 83.969 | 1048 | 147 | 16 | 1813 | 2846 | 442292346 | 442291306 | 0.000000e+00 | 985.0 |
3 | TraesCS5A01G226800 | chr5A | 87.281 | 456 | 49 | 3 | 2842 | 3297 | 442291222 | 442290776 | 3.000000e-141 | 512.0 |
4 | TraesCS5A01G226800 | chr5A | 88.675 | 415 | 47 | 0 | 3931 | 4345 | 477063013 | 477063427 | 1.390000e-139 | 507.0 |
5 | TraesCS5A01G226800 | chr5A | 85.117 | 383 | 44 | 4 | 2038 | 2413 | 442539225 | 442538849 | 3.170000e-101 | 379.0 |
6 | TraesCS5A01G226800 | chr5A | 84.950 | 299 | 17 | 17 | 991 | 1263 | 442509184 | 442508888 | 1.190000e-70 | 278.0 |
7 | TraesCS5A01G226800 | chr5D | 95.594 | 2542 | 96 | 9 | 1753 | 4286 | 341532393 | 341529860 | 0.000000e+00 | 4060.0 |
8 | TraesCS5A01G226800 | chr5D | 91.830 | 1530 | 105 | 11 | 1768 | 3292 | 341242757 | 341241243 | 0.000000e+00 | 2115.0 |
9 | TraesCS5A01G226800 | chr5D | 88.562 | 1530 | 158 | 10 | 1779 | 3294 | 556722664 | 556721138 | 0.000000e+00 | 1840.0 |
10 | TraesCS5A01G226800 | chr5D | 91.103 | 1034 | 48 | 15 | 214 | 1227 | 341533876 | 341532867 | 0.000000e+00 | 1360.0 |
11 | TraesCS5A01G226800 | chr5D | 87.091 | 1131 | 126 | 10 | 2164 | 3294 | 560107204 | 560106094 | 0.000000e+00 | 1262.0 |
12 | TraesCS5A01G226800 | chr5D | 83.973 | 1042 | 152 | 12 | 1812 | 2846 | 341076814 | 341075781 | 0.000000e+00 | 985.0 |
13 | TraesCS5A01G226800 | chr5D | 83.417 | 796 | 112 | 16 | 1603 | 2385 | 341261664 | 341260876 | 0.000000e+00 | 721.0 |
14 | TraesCS5A01G226800 | chr5D | 87.387 | 444 | 47 | 3 | 2842 | 3285 | 341075702 | 341075268 | 6.490000e-138 | 501.0 |
15 | TraesCS5A01G226800 | chr5D | 81.352 | 488 | 51 | 24 | 801 | 1263 | 341246160 | 341245688 | 1.150000e-95 | 361.0 |
16 | TraesCS5A01G226800 | chr5D | 88.532 | 218 | 24 | 1 | 928 | 1145 | 341311837 | 341311621 | 3.330000e-66 | 263.0 |
17 | TraesCS5A01G226800 | chr5D | 91.935 | 186 | 13 | 2 | 960 | 1145 | 556723257 | 556723074 | 4.310000e-65 | 259.0 |
18 | TraesCS5A01G226800 | chr5D | 91.257 | 183 | 15 | 1 | 981 | 1163 | 560108136 | 560107955 | 9.330000e-62 | 248.0 |
19 | TraesCS5A01G226800 | chr5D | 83.721 | 258 | 24 | 11 | 1308 | 1555 | 341532817 | 341532568 | 1.220000e-55 | 228.0 |
20 | TraesCS5A01G226800 | chr5D | 82.192 | 73 | 8 | 5 | 799 | 871 | 560108305 | 560108238 | 1.690000e-04 | 58.4 |
21 | TraesCS5A01G226800 | chr5B | 96.375 | 1876 | 58 | 7 | 1754 | 3629 | 400999136 | 400997271 | 0.000000e+00 | 3079.0 |
22 | TraesCS5A01G226800 | chr5B | 90.131 | 1530 | 110 | 16 | 1768 | 3292 | 400776651 | 400778144 | 0.000000e+00 | 1951.0 |
23 | TraesCS5A01G226800 | chr5B | 84.895 | 1483 | 198 | 15 | 1812 | 3285 | 400564243 | 400562778 | 0.000000e+00 | 1474.0 |
24 | TraesCS5A01G226800 | chr5B | 88.462 | 1248 | 78 | 36 | 18 | 1227 | 401000807 | 400999588 | 0.000000e+00 | 1447.0 |
25 | TraesCS5A01G226800 | chr5B | 88.235 | 289 | 16 | 11 | 991 | 1263 | 400773230 | 400773516 | 3.240000e-86 | 329.0 |
26 | TraesCS5A01G226800 | chr5B | 85.317 | 252 | 27 | 8 | 1308 | 1555 | 400999558 | 400999313 | 7.210000e-63 | 252.0 |
27 | TraesCS5A01G226800 | chr4A | 88.383 | 1515 | 144 | 17 | 1811 | 3294 | 605086907 | 605085394 | 0.000000e+00 | 1794.0 |
28 | TraesCS5A01G226800 | chr4A | 96.689 | 151 | 5 | 0 | 995 | 1145 | 605087319 | 605087169 | 7.210000e-63 | 252.0 |
29 | TraesCS5A01G226800 | chr4A | 82.857 | 70 | 12 | 0 | 4009 | 4078 | 417575048 | 417575117 | 3.630000e-06 | 63.9 |
30 | TraesCS5A01G226800 | chr4A | 71.228 | 285 | 68 | 11 | 4003 | 4280 | 635451356 | 635451633 | 4.690000e-05 | 60.2 |
31 | TraesCS5A01G226800 | chr3D | 86.811 | 417 | 54 | 1 | 3930 | 4345 | 575031056 | 575030640 | 8.510000e-127 | 464.0 |
32 | TraesCS5A01G226800 | chr3D | 84.521 | 407 | 63 | 0 | 3931 | 4337 | 386426478 | 386426884 | 1.880000e-108 | 403.0 |
33 | TraesCS5A01G226800 | chr3B | 78.795 | 415 | 82 | 6 | 3934 | 4345 | 485212911 | 485212500 | 1.540000e-69 | 274.0 |
34 | TraesCS5A01G226800 | chr3A | 83.710 | 221 | 32 | 4 | 3624 | 3842 | 589177084 | 589177302 | 5.700000e-49 | 206.0 |
35 | TraesCS5A01G226800 | chr6B | 82.251 | 231 | 29 | 4 | 3623 | 3842 | 686554162 | 686554391 | 5.740000e-44 | 189.0 |
36 | TraesCS5A01G226800 | chr4B | 81.624 | 234 | 31 | 4 | 3623 | 3845 | 479214925 | 479214693 | 2.670000e-42 | 183.0 |
37 | TraesCS5A01G226800 | chr2B | 80.995 | 221 | 38 | 4 | 3623 | 3841 | 708671703 | 708671921 | 5.780000e-39 | 172.0 |
38 | TraesCS5A01G226800 | chr2A | 80.851 | 235 | 31 | 9 | 3625 | 3847 | 642907275 | 642907507 | 5.780000e-39 | 172.0 |
39 | TraesCS5A01G226800 | chr6A | 79.828 | 233 | 35 | 4 | 3623 | 3844 | 26424421 | 26424652 | 4.500000e-35 | 159.0 |
40 | TraesCS5A01G226800 | chr2D | 72.772 | 404 | 93 | 13 | 3949 | 4344 | 94725098 | 94725492 | 2.120000e-23 | 121.0 |
41 | TraesCS5A01G226800 | chr6D | 83.621 | 116 | 17 | 2 | 3623 | 3737 | 8154097 | 8153983 | 1.650000e-19 | 108.0 |
42 | TraesCS5A01G226800 | chr7B | 72.222 | 342 | 85 | 9 | 3946 | 4282 | 65295169 | 65295505 | 3.580000e-16 | 97.1 |
43 | TraesCS5A01G226800 | chr1A | 92.683 | 41 | 3 | 0 | 4235 | 4275 | 74317059 | 74317019 | 4.690000e-05 | 60.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G226800 | chr5A | 442679023 | 442683367 | 4344 | True | 8024.000000 | 8024 | 100.000000 | 1 | 4345 | 1 | chr5A.!!$R2 | 4344 |
1 | TraesCS5A01G226800 | chr5A | 442504561 | 442509184 | 4623 | True | 1156.000000 | 2034 | 88.089500 | 991 | 3292 | 2 | chr5A.!!$R4 | 2301 |
2 | TraesCS5A01G226800 | chr5A | 442290776 | 442292346 | 1570 | True | 748.500000 | 985 | 85.625000 | 1813 | 3297 | 2 | chr5A.!!$R3 | 1484 |
3 | TraesCS5A01G226800 | chr5D | 341529860 | 341533876 | 4016 | True | 1882.666667 | 4060 | 90.139333 | 214 | 4286 | 3 | chr5D.!!$R5 | 4072 |
4 | TraesCS5A01G226800 | chr5D | 341241243 | 341246160 | 4917 | True | 1238.000000 | 2115 | 86.591000 | 801 | 3292 | 2 | chr5D.!!$R4 | 2491 |
5 | TraesCS5A01G226800 | chr5D | 556721138 | 556723257 | 2119 | True | 1049.500000 | 1840 | 90.248500 | 960 | 3294 | 2 | chr5D.!!$R6 | 2334 |
6 | TraesCS5A01G226800 | chr5D | 341075268 | 341076814 | 1546 | True | 743.000000 | 985 | 85.680000 | 1812 | 3285 | 2 | chr5D.!!$R3 | 1473 |
7 | TraesCS5A01G226800 | chr5D | 341260876 | 341261664 | 788 | True | 721.000000 | 721 | 83.417000 | 1603 | 2385 | 1 | chr5D.!!$R1 | 782 |
8 | TraesCS5A01G226800 | chr5D | 560106094 | 560108305 | 2211 | True | 522.800000 | 1262 | 86.846667 | 799 | 3294 | 3 | chr5D.!!$R7 | 2495 |
9 | TraesCS5A01G226800 | chr5B | 400997271 | 401000807 | 3536 | True | 1592.666667 | 3079 | 90.051333 | 18 | 3629 | 3 | chr5B.!!$R2 | 3611 |
10 | TraesCS5A01G226800 | chr5B | 400562778 | 400564243 | 1465 | True | 1474.000000 | 1474 | 84.895000 | 1812 | 3285 | 1 | chr5B.!!$R1 | 1473 |
11 | TraesCS5A01G226800 | chr5B | 400773230 | 400778144 | 4914 | False | 1140.000000 | 1951 | 89.183000 | 991 | 3292 | 2 | chr5B.!!$F1 | 2301 |
12 | TraesCS5A01G226800 | chr4A | 605085394 | 605087319 | 1925 | True | 1023.000000 | 1794 | 92.536000 | 995 | 3294 | 2 | chr4A.!!$R1 | 2299 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
581 | 602 | 0.322726 | TGGTGGTGGATGCTGTGATG | 60.323 | 55.0 | 0.0 | 0.0 | 0.0 | 3.07 | F |
1557 | 2045 | 0.311165 | TAAGCGCGAGTGCTAGATCC | 59.689 | 55.0 | 12.1 | 0.0 | 46.6 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1601 | 2095 | 0.169230 | CTTGTGTCTAGAGCGCGTCT | 59.831 | 55.0 | 8.43 | 12.04 | 39.59 | 4.18 | R |
3480 | 7756 | 1.209621 | AACACCACACCAGTACCACT | 58.790 | 50.0 | 0.00 | 0.00 | 0.00 | 4.00 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
21 | 22 | 3.998913 | TGGCCTTGATGTCACATAAGA | 57.001 | 42.857 | 3.32 | 0.00 | 0.00 | 2.10 |
22 | 23 | 4.508551 | TGGCCTTGATGTCACATAAGAT | 57.491 | 40.909 | 3.32 | 0.00 | 0.00 | 2.40 |
23 | 24 | 4.201657 | TGGCCTTGATGTCACATAAGATG | 58.798 | 43.478 | 3.32 | 0.00 | 0.00 | 2.90 |
55 | 56 | 1.133790 | GCATGGCTGGAATCTTGTGTC | 59.866 | 52.381 | 0.00 | 0.00 | 0.00 | 3.67 |
62 | 63 | 2.493675 | CTGGAATCTTGTGTCGAGGAGA | 59.506 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
64 | 65 | 3.515502 | TGGAATCTTGTGTCGAGGAGATT | 59.484 | 43.478 | 10.50 | 10.50 | 40.50 | 2.40 |
66 | 67 | 4.382040 | GGAATCTTGTGTCGAGGAGATTGA | 60.382 | 45.833 | 13.85 | 0.00 | 38.56 | 2.57 |
67 | 68 | 5.350504 | AATCTTGTGTCGAGGAGATTGAT | 57.649 | 39.130 | 10.11 | 0.00 | 37.44 | 2.57 |
68 | 69 | 4.115401 | TCTTGTGTCGAGGAGATTGATG | 57.885 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
69 | 70 | 3.763897 | TCTTGTGTCGAGGAGATTGATGA | 59.236 | 43.478 | 0.00 | 0.00 | 0.00 | 2.92 |
70 | 71 | 4.403752 | TCTTGTGTCGAGGAGATTGATGAT | 59.596 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
71 | 72 | 4.050852 | TGTGTCGAGGAGATTGATGATG | 57.949 | 45.455 | 0.00 | 0.00 | 0.00 | 3.07 |
72 | 73 | 3.448660 | TGTGTCGAGGAGATTGATGATGT | 59.551 | 43.478 | 0.00 | 0.00 | 0.00 | 3.06 |
73 | 74 | 4.644685 | TGTGTCGAGGAGATTGATGATGTA | 59.355 | 41.667 | 0.00 | 0.00 | 0.00 | 2.29 |
74 | 75 | 5.302823 | TGTGTCGAGGAGATTGATGATGTAT | 59.697 | 40.000 | 0.00 | 0.00 | 0.00 | 2.29 |
75 | 76 | 6.490040 | TGTGTCGAGGAGATTGATGATGTATA | 59.510 | 38.462 | 0.00 | 0.00 | 0.00 | 1.47 |
78 | 79 | 9.413734 | TGTCGAGGAGATTGATGATGTATATAT | 57.586 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
97 | 98 | 3.795623 | ATGACTGCATGGCTGAATTTC | 57.204 | 42.857 | 0.00 | 0.00 | 32.31 | 2.17 |
99 | 100 | 3.159472 | TGACTGCATGGCTGAATTTCTT | 58.841 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
127 | 128 | 5.506982 | CGCAGAGACTGACAATCTATGATCA | 60.507 | 44.000 | 12.43 | 0.00 | 37.56 | 2.92 |
128 | 129 | 5.691305 | GCAGAGACTGACAATCTATGATCAC | 59.309 | 44.000 | 12.43 | 0.00 | 37.56 | 3.06 |
155 | 156 | 2.897326 | TGAAATCTTGTGTCGAGGAGGA | 59.103 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
159 | 160 | 2.739943 | TCTTGTGTCGAGGAGGATGAT | 58.260 | 47.619 | 0.00 | 0.00 | 0.00 | 2.45 |
160 | 161 | 2.428530 | TCTTGTGTCGAGGAGGATGATG | 59.571 | 50.000 | 0.00 | 0.00 | 0.00 | 3.07 |
169 | 170 | 2.902486 | GAGGAGGATGATGATGTAGCCA | 59.098 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
196 | 197 | 4.900054 | GCTGAACTCTATTCCCTACCCTAA | 59.100 | 45.833 | 0.00 | 0.00 | 0.00 | 2.69 |
199 | 202 | 6.374588 | TGAACTCTATTCCCTACCCTAAGAG | 58.625 | 44.000 | 0.00 | 0.00 | 36.06 | 2.85 |
201 | 204 | 4.738132 | ACTCTATTCCCTACCCTAAGAGGT | 59.262 | 45.833 | 0.00 | 0.00 | 44.37 | 3.85 |
204 | 207 | 2.862850 | TCCCTACCCTAAGAGGTTCC | 57.137 | 55.000 | 0.00 | 0.00 | 41.58 | 3.62 |
207 | 210 | 1.755380 | CCTACCCTAAGAGGTTCCGTG | 59.245 | 57.143 | 0.00 | 0.00 | 41.58 | 4.94 |
212 | 215 | 2.236395 | CCCTAAGAGGTTCCGTGTGAAT | 59.764 | 50.000 | 0.00 | 0.00 | 34.90 | 2.57 |
217 | 220 | 2.631062 | AGAGGTTCCGTGTGAATGTGTA | 59.369 | 45.455 | 0.00 | 0.00 | 34.90 | 2.90 |
321 | 333 | 6.465948 | TGACAAGGCTGCATTATTGAAAAAT | 58.534 | 32.000 | 0.00 | 0.00 | 0.00 | 1.82 |
400 | 414 | 7.961326 | AATCACTTGGTAGCCTATTTTTCAT | 57.039 | 32.000 | 0.00 | 0.00 | 0.00 | 2.57 |
473 | 487 | 5.925969 | CCTAATTCATGCACTTTCCGTTTTT | 59.074 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
549 | 570 | 2.723124 | TGGAGCGAAATTCTTTTGGC | 57.277 | 45.000 | 0.00 | 0.00 | 44.23 | 4.52 |
579 | 600 | 1.073025 | GTGGTGGTGGATGCTGTGA | 59.927 | 57.895 | 0.00 | 0.00 | 0.00 | 3.58 |
580 | 601 | 0.322816 | GTGGTGGTGGATGCTGTGAT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
581 | 602 | 0.322726 | TGGTGGTGGATGCTGTGATG | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
582 | 603 | 0.322816 | GGTGGTGGATGCTGTGATGT | 60.323 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
583 | 604 | 0.806868 | GTGGTGGATGCTGTGATGTG | 59.193 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
598 | 619 | 2.629137 | TGATGTGCAGCCACTCAATTTT | 59.371 | 40.909 | 0.00 | 0.00 | 42.54 | 1.82 |
599 | 620 | 3.069872 | TGATGTGCAGCCACTCAATTTTT | 59.930 | 39.130 | 0.00 | 0.00 | 42.54 | 1.94 |
646 | 667 | 9.251440 | TGTGGGACTCCTTACATATATATGTAC | 57.749 | 37.037 | 27.71 | 18.09 | 45.78 | 2.90 |
755 | 777 | 2.586079 | CCTTGATGGCGCGATCGT | 60.586 | 61.111 | 24.51 | 1.40 | 38.14 | 3.73 |
926 | 965 | 5.278709 | GCTTATGCTATGTGTAGAGAGAGCA | 60.279 | 44.000 | 8.80 | 8.80 | 43.50 | 4.26 |
952 | 1000 | 2.380410 | CGGCTGAACGTAGGCACAC | 61.380 | 63.158 | 11.88 | 0.00 | 42.87 | 3.82 |
967 | 1017 | 1.545651 | GCACACCCCTAGCTTGACTTT | 60.546 | 52.381 | 0.00 | 0.00 | 0.00 | 2.66 |
974 | 1024 | 4.291249 | ACCCCTAGCTTGACTTTAATTCCA | 59.709 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
1229 | 1315 | 0.890996 | GGCTGAGTCACTTGGGGTTG | 60.891 | 60.000 | 0.00 | 0.00 | 0.00 | 3.77 |
1248 | 1339 | 0.949105 | GGGTTGTACGAGTGTGGCTG | 60.949 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1252 | 1343 | 0.319555 | TGTACGAGTGTGGCTGCTTC | 60.320 | 55.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1305 | 1777 | 4.893424 | TTTTCTTTAGCATATCGTGGGC | 57.107 | 40.909 | 0.00 | 0.00 | 0.00 | 5.36 |
1306 | 1778 | 3.552132 | TTCTTTAGCATATCGTGGGCA | 57.448 | 42.857 | 0.00 | 0.00 | 0.00 | 5.36 |
1307 | 1779 | 3.552132 | TCTTTAGCATATCGTGGGCAA | 57.448 | 42.857 | 0.00 | 0.00 | 0.00 | 4.52 |
1309 | 1781 | 3.876914 | TCTTTAGCATATCGTGGGCAAAG | 59.123 | 43.478 | 0.00 | 0.00 | 32.27 | 2.77 |
1310 | 1782 | 3.552132 | TTAGCATATCGTGGGCAAAGA | 57.448 | 42.857 | 0.00 | 0.00 | 0.00 | 2.52 |
1311 | 1783 | 2.645838 | AGCATATCGTGGGCAAAGAT | 57.354 | 45.000 | 0.00 | 0.00 | 0.00 | 2.40 |
1312 | 1784 | 2.224606 | AGCATATCGTGGGCAAAGATG | 58.775 | 47.619 | 0.09 | 0.00 | 0.00 | 2.90 |
1386 | 1862 | 5.432645 | GAAGGAAGGAGAGTATTTTGAGGG | 58.567 | 45.833 | 0.00 | 0.00 | 0.00 | 4.30 |
1398 | 1874 | 1.981256 | TTTGAGGGAGCAAAGGACAC | 58.019 | 50.000 | 0.00 | 0.00 | 33.16 | 3.67 |
1424 | 1907 | 2.413837 | ACGCATGCTTTTAGACGACTT | 58.586 | 42.857 | 17.13 | 0.00 | 0.00 | 3.01 |
1431 | 1914 | 2.076863 | CTTTTAGACGACTTGCAGGGG | 58.923 | 52.381 | 0.00 | 0.00 | 0.00 | 4.79 |
1432 | 1915 | 1.053424 | TTTAGACGACTTGCAGGGGT | 58.947 | 50.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1463 | 1948 | 3.093278 | GCAGTGCCAGTGCGATAC | 58.907 | 61.111 | 9.05 | 0.00 | 41.78 | 2.24 |
1480 | 1965 | 5.705441 | TGCGATACCTGAAACTTTGATTTCT | 59.295 | 36.000 | 0.00 | 0.00 | 39.02 | 2.52 |
1481 | 1966 | 6.024049 | GCGATACCTGAAACTTTGATTTCTG | 58.976 | 40.000 | 0.00 | 0.00 | 39.02 | 3.02 |
1502 | 1990 | 5.415701 | TCTGTCCCAAACTCTTCATAATTGC | 59.584 | 40.000 | 0.00 | 0.00 | 0.00 | 3.56 |
1544 | 2032 | 8.443160 | TGAACATCAAGCTATATATTTAAGCGC | 58.557 | 33.333 | 0.00 | 0.00 | 41.19 | 5.92 |
1547 | 2035 | 6.871044 | TCAAGCTATATATTTAAGCGCGAG | 57.129 | 37.500 | 12.10 | 0.00 | 41.19 | 5.03 |
1548 | 2036 | 6.387465 | TCAAGCTATATATTTAAGCGCGAGT | 58.613 | 36.000 | 12.10 | 0.00 | 41.19 | 4.18 |
1549 | 2037 | 6.308041 | TCAAGCTATATATTTAAGCGCGAGTG | 59.692 | 38.462 | 12.10 | 0.00 | 41.19 | 3.51 |
1550 | 2038 | 4.563184 | AGCTATATATTTAAGCGCGAGTGC | 59.437 | 41.667 | 12.10 | 0.00 | 41.19 | 4.40 |
1553 | 2041 | 6.075310 | GCTATATATTTAAGCGCGAGTGCTAG | 60.075 | 42.308 | 12.10 | 3.59 | 46.60 | 3.42 |
1557 | 2045 | 0.311165 | TAAGCGCGAGTGCTAGATCC | 59.689 | 55.000 | 12.10 | 0.00 | 46.60 | 3.36 |
1578 | 2072 | 3.985279 | CCAGCAATTGACATCACAAGTTG | 59.015 | 43.478 | 10.34 | 0.00 | 33.22 | 3.16 |
1580 | 2074 | 5.045215 | CAGCAATTGACATCACAAGTTGTT | 58.955 | 37.500 | 10.34 | 0.00 | 33.22 | 2.83 |
1583 | 2077 | 6.864685 | AGCAATTGACATCACAAGTTGTTATG | 59.135 | 34.615 | 22.76 | 22.76 | 37.82 | 1.90 |
1584 | 2078 | 6.642131 | GCAATTGACATCACAAGTTGTTATGT | 59.358 | 34.615 | 27.73 | 27.73 | 44.93 | 2.29 |
1589 | 2083 | 6.258230 | ACATCACAAGTTGTTATGTCCATG | 57.742 | 37.500 | 23.87 | 12.15 | 40.09 | 3.66 |
1591 | 2085 | 6.939730 | ACATCACAAGTTGTTATGTCCATGTA | 59.060 | 34.615 | 23.87 | 0.00 | 40.09 | 2.29 |
1593 | 2087 | 7.433708 | TCACAAGTTGTTATGTCCATGTAAG | 57.566 | 36.000 | 5.57 | 0.00 | 0.00 | 2.34 |
1594 | 2088 | 6.995686 | TCACAAGTTGTTATGTCCATGTAAGT | 59.004 | 34.615 | 5.57 | 0.00 | 0.00 | 2.24 |
1595 | 2089 | 7.172532 | TCACAAGTTGTTATGTCCATGTAAGTC | 59.827 | 37.037 | 5.57 | 0.00 | 0.00 | 3.01 |
1596 | 2090 | 6.995686 | ACAAGTTGTTATGTCCATGTAAGTCA | 59.004 | 34.615 | 1.64 | 0.00 | 0.00 | 3.41 |
1598 | 2092 | 5.938125 | AGTTGTTATGTCCATGTAAGTCACC | 59.062 | 40.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1599 | 2093 | 5.491323 | TGTTATGTCCATGTAAGTCACCA | 57.509 | 39.130 | 0.00 | 0.00 | 0.00 | 4.17 |
1600 | 2094 | 6.061022 | TGTTATGTCCATGTAAGTCACCAT | 57.939 | 37.500 | 0.00 | 0.00 | 0.00 | 3.55 |
1601 | 2095 | 7.189079 | TGTTATGTCCATGTAAGTCACCATA | 57.811 | 36.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1605 | 2099 | 4.142249 | TGTCCATGTAAGTCACCATAGACG | 60.142 | 45.833 | 0.00 | 0.00 | 43.24 | 4.18 |
1610 | 2104 | 0.179134 | AAGTCACCATAGACGCGCTC | 60.179 | 55.000 | 5.73 | 2.87 | 43.24 | 5.03 |
1628 | 2632 | 1.269723 | CTCTAGACACAAGGCACGACA | 59.730 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1695 | 4357 | 5.695818 | CATAAACTAACGTGAAAACCCCAG | 58.304 | 41.667 | 0.00 | 0.00 | 0.00 | 4.45 |
1738 | 4724 | 3.950397 | TCCGACAAATGGTTTGAGCTAT | 58.050 | 40.909 | 9.21 | 0.00 | 43.26 | 2.97 |
1751 | 4739 | 8.825667 | TGGTTTGAGCTATAAAACAAATTTCC | 57.174 | 30.769 | 16.58 | 7.56 | 37.89 | 3.13 |
1759 | 4780 | 9.929180 | AGCTATAAAACAAATTTCCTTTCCTTC | 57.071 | 29.630 | 0.00 | 0.00 | 32.27 | 3.46 |
1791 | 5800 | 2.724977 | TGTCATTCCGTGTCTCACTC | 57.275 | 50.000 | 0.00 | 0.00 | 31.34 | 3.51 |
1792 | 5801 | 2.239400 | TGTCATTCCGTGTCTCACTCT | 58.761 | 47.619 | 0.00 | 0.00 | 31.34 | 3.24 |
1793 | 5802 | 2.628178 | TGTCATTCCGTGTCTCACTCTT | 59.372 | 45.455 | 0.00 | 0.00 | 31.34 | 2.85 |
1794 | 5803 | 3.824443 | TGTCATTCCGTGTCTCACTCTTA | 59.176 | 43.478 | 0.00 | 0.00 | 31.34 | 2.10 |
1889 | 5898 | 3.884037 | AAGAACTTGGTGACCCTGAAT | 57.116 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
2123 | 6132 | 2.433664 | GTCGGCATCGGTTTCGGT | 60.434 | 61.111 | 0.00 | 0.00 | 36.95 | 4.69 |
2282 | 6461 | 0.527565 | GCGGGCTGAACATGATGTTT | 59.472 | 50.000 | 12.62 | 0.00 | 41.28 | 2.83 |
2288 | 6467 | 4.170292 | GCTGAACATGATGTTTCAGCTT | 57.830 | 40.909 | 31.81 | 8.78 | 46.08 | 3.74 |
2660 | 6839 | 0.904865 | TCCTGACGGGCATCAACTCT | 60.905 | 55.000 | 0.00 | 0.00 | 34.39 | 3.24 |
2682 | 6861 | 3.909258 | CTGTTCTACGCGCCGGTGT | 62.909 | 63.158 | 17.91 | 9.10 | 40.64 | 4.16 |
2984 | 7251 | 2.440796 | CCGCTAGGGTGGACGGTA | 60.441 | 66.667 | 6.02 | 0.00 | 45.39 | 4.02 |
3363 | 7639 | 8.734386 | ACAAGTGAAGATCATTATCAAAGAACC | 58.266 | 33.333 | 0.00 | 0.00 | 34.28 | 3.62 |
3364 | 7640 | 8.733458 | CAAGTGAAGATCATTATCAAAGAACCA | 58.267 | 33.333 | 0.00 | 0.00 | 34.28 | 3.67 |
3368 | 7644 | 6.910536 | AGATCATTATCAAAGAACCACGAC | 57.089 | 37.500 | 0.00 | 0.00 | 34.28 | 4.34 |
3479 | 7755 | 5.105187 | AGGAGACGCACATGCACATATATAT | 60.105 | 40.000 | 4.49 | 0.00 | 42.21 | 0.86 |
3480 | 7756 | 6.096846 | AGGAGACGCACATGCACATATATATA | 59.903 | 38.462 | 4.49 | 0.00 | 42.21 | 0.86 |
3489 | 7765 | 9.305925 | CACATGCACATATATATAGTGGTACTG | 57.694 | 37.037 | 18.66 | 5.55 | 33.98 | 2.74 |
3637 | 7913 | 7.867909 | CGGATCACTAAGCATGTAATTTAGAGA | 59.132 | 37.037 | 12.28 | 10.67 | 31.73 | 3.10 |
3658 | 7934 | 8.412608 | AGAGATGACAAAAATGTATGTCTACG | 57.587 | 34.615 | 7.35 | 0.00 | 44.86 | 3.51 |
3661 | 7937 | 8.820933 | AGATGACAAAAATGTATGTCTACGATG | 58.179 | 33.333 | 7.35 | 0.00 | 44.86 | 3.84 |
3733 | 8013 | 8.815565 | TGATGAGATATATTGTCCTAGGAGAC | 57.184 | 38.462 | 13.15 | 2.13 | 37.28 | 3.36 |
3737 | 8017 | 8.180165 | TGAGATATATTGTCCTAGGAGACCATT | 58.820 | 37.037 | 13.15 | 6.14 | 35.83 | 3.16 |
3825 | 8105 | 5.410355 | ACGTGGCACTCCTAAAATAGTAA | 57.590 | 39.130 | 16.72 | 0.00 | 0.00 | 2.24 |
3830 | 8110 | 7.493320 | CGTGGCACTCCTAAAATAGTAACATTA | 59.507 | 37.037 | 16.72 | 0.00 | 0.00 | 1.90 |
3916 | 8196 | 2.094649 | AGACCCTTTTTCTCGCTCGTAG | 60.095 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
3959 | 8239 | 4.647424 | TTGTGTTGTGATTCAAGGGTTC | 57.353 | 40.909 | 0.00 | 0.00 | 36.66 | 3.62 |
3971 | 8251 | 1.106944 | AAGGGTTCTGTTTGGGCACG | 61.107 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
3982 | 8262 | 3.322254 | TGTTTGGGCACGGTTGATATTTT | 59.678 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
4022 | 8302 | 6.962182 | TGTCATCATCCTCATTCCTAAAGTT | 58.038 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
4030 | 8310 | 4.514401 | CTCATTCCTAAAGTTAAGGGCGT | 58.486 | 43.478 | 0.00 | 0.00 | 34.66 | 5.68 |
4035 | 8315 | 2.353323 | CTAAAGTTAAGGGCGTGGACC | 58.647 | 52.381 | 0.00 | 0.00 | 0.00 | 4.46 |
4042 | 8322 | 1.617947 | AAGGGCGTGGACCTGATCTC | 61.618 | 60.000 | 0.00 | 0.00 | 42.44 | 2.75 |
4054 | 8334 | 4.442753 | GGACCTGATCTCTCAATTCAGACC | 60.443 | 50.000 | 0.90 | 1.46 | 39.36 | 3.85 |
4127 | 8411 | 1.606480 | CGTCTCTCACCTGTTGCACAT | 60.606 | 52.381 | 0.00 | 0.00 | 0.00 | 3.21 |
4136 | 8420 | 2.037251 | ACCTGTTGCACATCGTACTCTT | 59.963 | 45.455 | 0.00 | 0.00 | 0.00 | 2.85 |
4150 | 8434 | 6.600882 | TCGTACTCTTTTCCCTTATCAGTT | 57.399 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
4180 | 8464 | 0.918983 | AAAGGGCGATTCATCCTGGA | 59.081 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
4253 | 8537 | 5.985911 | AGAAAAGCGGTAATCCTTAAGCTA | 58.014 | 37.500 | 0.00 | 0.00 | 33.10 | 3.32 |
4282 | 8566 | 4.109050 | GAGAAAGCTTATGACTCGGTCAG | 58.891 | 47.826 | 0.00 | 1.63 | 46.04 | 3.51 |
4286 | 8570 | 2.826128 | AGCTTATGACTCGGTCAGTTGA | 59.174 | 45.455 | 11.50 | 0.00 | 46.04 | 3.18 |
4287 | 8571 | 3.258372 | AGCTTATGACTCGGTCAGTTGAA | 59.742 | 43.478 | 11.50 | 4.20 | 46.04 | 2.69 |
4288 | 8572 | 3.994392 | GCTTATGACTCGGTCAGTTGAAA | 59.006 | 43.478 | 11.50 | 2.56 | 46.04 | 2.69 |
4289 | 8573 | 4.092091 | GCTTATGACTCGGTCAGTTGAAAG | 59.908 | 45.833 | 11.50 | 10.09 | 46.04 | 2.62 |
4290 | 8574 | 3.753294 | ATGACTCGGTCAGTTGAAAGT | 57.247 | 42.857 | 11.50 | 0.00 | 46.04 | 2.66 |
4291 | 8575 | 3.536956 | TGACTCGGTCAGTTGAAAGTT | 57.463 | 42.857 | 3.02 | 0.00 | 37.67 | 2.66 |
4292 | 8576 | 3.869065 | TGACTCGGTCAGTTGAAAGTTT | 58.131 | 40.909 | 3.02 | 0.00 | 37.67 | 2.66 |
4293 | 8577 | 4.258543 | TGACTCGGTCAGTTGAAAGTTTT | 58.741 | 39.130 | 3.02 | 0.00 | 37.67 | 2.43 |
4294 | 8578 | 4.698304 | TGACTCGGTCAGTTGAAAGTTTTT | 59.302 | 37.500 | 3.02 | 0.00 | 37.67 | 1.94 |
4295 | 8579 | 5.875910 | TGACTCGGTCAGTTGAAAGTTTTTA | 59.124 | 36.000 | 3.02 | 0.00 | 37.67 | 1.52 |
4296 | 8580 | 6.115450 | ACTCGGTCAGTTGAAAGTTTTTAC | 57.885 | 37.500 | 0.00 | 0.00 | 26.56 | 2.01 |
4297 | 8581 | 5.644636 | ACTCGGTCAGTTGAAAGTTTTTACA | 59.355 | 36.000 | 0.00 | 0.00 | 26.56 | 2.41 |
4298 | 8582 | 6.114221 | TCGGTCAGTTGAAAGTTTTTACAG | 57.886 | 37.500 | 0.00 | 0.00 | 0.00 | 2.74 |
4299 | 8583 | 4.733405 | CGGTCAGTTGAAAGTTTTTACAGC | 59.267 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
4300 | 8584 | 5.646606 | GGTCAGTTGAAAGTTTTTACAGCA | 58.353 | 37.500 | 0.00 | 0.00 | 0.00 | 4.41 |
4301 | 8585 | 6.096695 | GGTCAGTTGAAAGTTTTTACAGCAA | 58.903 | 36.000 | 0.00 | 0.00 | 0.00 | 3.91 |
4302 | 8586 | 6.253512 | GGTCAGTTGAAAGTTTTTACAGCAAG | 59.746 | 38.462 | 0.00 | 0.00 | 0.00 | 4.01 |
4303 | 8587 | 6.806739 | GTCAGTTGAAAGTTTTTACAGCAAGT | 59.193 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
4304 | 8588 | 7.008357 | GTCAGTTGAAAGTTTTTACAGCAAGTC | 59.992 | 37.037 | 0.00 | 0.00 | 0.00 | 3.01 |
4305 | 8589 | 6.253512 | CAGTTGAAAGTTTTTACAGCAAGTCC | 59.746 | 38.462 | 0.00 | 0.00 | 0.00 | 3.85 |
4306 | 8590 | 6.152831 | AGTTGAAAGTTTTTACAGCAAGTCCT | 59.847 | 34.615 | 0.00 | 0.00 | 0.00 | 3.85 |
4307 | 8591 | 7.338449 | AGTTGAAAGTTTTTACAGCAAGTCCTA | 59.662 | 33.333 | 0.00 | 0.00 | 0.00 | 2.94 |
4308 | 8592 | 7.023197 | TGAAAGTTTTTACAGCAAGTCCTAC | 57.977 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4309 | 8593 | 6.826741 | TGAAAGTTTTTACAGCAAGTCCTACT | 59.173 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
4310 | 8594 | 6.619801 | AAGTTTTTACAGCAAGTCCTACTG | 57.380 | 37.500 | 0.00 | 0.00 | 37.45 | 2.74 |
4311 | 8595 | 5.063880 | AGTTTTTACAGCAAGTCCTACTGG | 58.936 | 41.667 | 0.00 | 0.00 | 35.70 | 4.00 |
4312 | 8596 | 2.762535 | TTACAGCAAGTCCTACTGGC | 57.237 | 50.000 | 0.00 | 0.00 | 45.53 | 4.85 |
4317 | 8601 | 2.997485 | GCAAGTCCTACTGGCAAAAG | 57.003 | 50.000 | 1.49 | 0.00 | 44.56 | 2.27 |
4318 | 8602 | 1.541588 | GCAAGTCCTACTGGCAAAAGG | 59.458 | 52.381 | 8.21 | 8.21 | 44.56 | 3.11 |
4319 | 8603 | 1.541588 | CAAGTCCTACTGGCAAAAGGC | 59.458 | 52.381 | 9.42 | 5.78 | 43.74 | 4.35 |
4320 | 8604 | 1.068121 | AGTCCTACTGGCAAAAGGCT | 58.932 | 50.000 | 9.42 | 7.58 | 44.01 | 4.58 |
4321 | 8605 | 1.003696 | AGTCCTACTGGCAAAAGGCTC | 59.996 | 52.381 | 9.42 | 6.02 | 44.01 | 4.70 |
4322 | 8606 | 1.003696 | GTCCTACTGGCAAAAGGCTCT | 59.996 | 52.381 | 9.42 | 0.00 | 44.01 | 4.09 |
4323 | 8607 | 1.003580 | TCCTACTGGCAAAAGGCTCTG | 59.996 | 52.381 | 9.42 | 0.00 | 44.01 | 3.35 |
4324 | 8608 | 1.003580 | CCTACTGGCAAAAGGCTCTGA | 59.996 | 52.381 | 2.13 | 0.00 | 44.01 | 3.27 |
4325 | 8609 | 2.553028 | CCTACTGGCAAAAGGCTCTGAA | 60.553 | 50.000 | 2.13 | 0.00 | 44.01 | 3.02 |
4326 | 8610 | 1.613836 | ACTGGCAAAAGGCTCTGAAG | 58.386 | 50.000 | 0.97 | 0.88 | 44.01 | 3.02 |
4327 | 8611 | 0.886563 | CTGGCAAAAGGCTCTGAAGG | 59.113 | 55.000 | 0.97 | 0.00 | 44.01 | 3.46 |
4328 | 8612 | 0.478072 | TGGCAAAAGGCTCTGAAGGA | 59.522 | 50.000 | 0.97 | 0.00 | 44.01 | 3.36 |
4329 | 8613 | 1.172175 | GGCAAAAGGCTCTGAAGGAG | 58.828 | 55.000 | 0.97 | 0.00 | 44.01 | 3.69 |
4340 | 8624 | 4.751767 | CTCTGAAGGAGCCTTTGTCTAT | 57.248 | 45.455 | 2.85 | 0.00 | 36.26 | 1.98 |
4341 | 8625 | 5.860941 | CTCTGAAGGAGCCTTTGTCTATA | 57.139 | 43.478 | 2.85 | 0.00 | 36.26 | 1.31 |
4342 | 8626 | 5.841810 | CTCTGAAGGAGCCTTTGTCTATAG | 58.158 | 45.833 | 2.85 | 0.00 | 36.26 | 1.31 |
4343 | 8627 | 4.651503 | TCTGAAGGAGCCTTTGTCTATAGG | 59.348 | 45.833 | 2.85 | 0.00 | 36.26 | 2.57 |
4344 | 8628 | 3.711704 | TGAAGGAGCCTTTGTCTATAGGG | 59.288 | 47.826 | 2.85 | 0.00 | 36.26 | 3.53 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 4.508551 | TCTTATGTGACATCAAGGCCAT | 57.491 | 40.909 | 5.01 | 0.00 | 0.00 | 4.40 |
4 | 5 | 6.405065 | CCCAAACATCTTATGTGACATCAAGG | 60.405 | 42.308 | 0.00 | 0.00 | 44.07 | 3.61 |
5 | 6 | 6.151648 | ACCCAAACATCTTATGTGACATCAAG | 59.848 | 38.462 | 0.00 | 5.05 | 44.07 | 3.02 |
8 | 9 | 5.647658 | TCACCCAAACATCTTATGTGACATC | 59.352 | 40.000 | 0.00 | 0.00 | 44.07 | 3.06 |
9 | 10 | 5.569355 | TCACCCAAACATCTTATGTGACAT | 58.431 | 37.500 | 2.65 | 2.65 | 44.07 | 3.06 |
10 | 11 | 4.979335 | TCACCCAAACATCTTATGTGACA | 58.021 | 39.130 | 0.00 | 0.00 | 44.07 | 3.58 |
11 | 12 | 5.957842 | TTCACCCAAACATCTTATGTGAC | 57.042 | 39.130 | 0.00 | 0.00 | 44.07 | 3.67 |
12 | 13 | 5.105797 | GCATTCACCCAAACATCTTATGTGA | 60.106 | 40.000 | 0.00 | 0.00 | 44.07 | 3.58 |
13 | 14 | 5.104374 | GCATTCACCCAAACATCTTATGTG | 58.896 | 41.667 | 0.00 | 0.00 | 44.07 | 3.21 |
15 | 16 | 5.327616 | TGCATTCACCCAAACATCTTATG | 57.672 | 39.130 | 0.00 | 0.00 | 0.00 | 1.90 |
16 | 17 | 5.163385 | CCATGCATTCACCCAAACATCTTAT | 60.163 | 40.000 | 0.00 | 0.00 | 0.00 | 1.73 |
17 | 18 | 4.160065 | CCATGCATTCACCCAAACATCTTA | 59.840 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
18 | 19 | 3.055675 | CCATGCATTCACCCAAACATCTT | 60.056 | 43.478 | 0.00 | 0.00 | 0.00 | 2.40 |
19 | 20 | 2.498481 | CCATGCATTCACCCAAACATCT | 59.502 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
20 | 21 | 2.896168 | CCATGCATTCACCCAAACATC | 58.104 | 47.619 | 0.00 | 0.00 | 0.00 | 3.06 |
21 | 22 | 1.065998 | GCCATGCATTCACCCAAACAT | 60.066 | 47.619 | 0.00 | 0.00 | 0.00 | 2.71 |
22 | 23 | 0.321021 | GCCATGCATTCACCCAAACA | 59.679 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
23 | 24 | 0.609662 | AGCCATGCATTCACCCAAAC | 59.390 | 50.000 | 0.00 | 0.00 | 0.00 | 2.93 |
55 | 56 | 9.676195 | GTCATATATACATCATCAATCTCCTCG | 57.324 | 37.037 | 0.00 | 0.00 | 0.00 | 4.63 |
62 | 63 | 9.338622 | CCATGCAGTCATATATACATCATCAAT | 57.661 | 33.333 | 0.00 | 0.00 | 0.00 | 2.57 |
64 | 65 | 6.764560 | GCCATGCAGTCATATATACATCATCA | 59.235 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
66 | 67 | 6.766467 | CAGCCATGCAGTCATATATACATCAT | 59.234 | 38.462 | 0.00 | 0.00 | 0.00 | 2.45 |
67 | 68 | 6.070653 | TCAGCCATGCAGTCATATATACATCA | 60.071 | 38.462 | 0.00 | 0.00 | 0.00 | 3.07 |
68 | 69 | 6.343703 | TCAGCCATGCAGTCATATATACATC | 58.656 | 40.000 | 0.00 | 0.00 | 0.00 | 3.06 |
69 | 70 | 6.303903 | TCAGCCATGCAGTCATATATACAT | 57.696 | 37.500 | 0.00 | 0.00 | 0.00 | 2.29 |
70 | 71 | 5.743636 | TCAGCCATGCAGTCATATATACA | 57.256 | 39.130 | 0.00 | 0.00 | 0.00 | 2.29 |
71 | 72 | 7.621428 | AATTCAGCCATGCAGTCATATATAC | 57.379 | 36.000 | 0.00 | 0.00 | 0.00 | 1.47 |
72 | 73 | 8.105197 | AGAAATTCAGCCATGCAGTCATATATA | 58.895 | 33.333 | 0.00 | 0.00 | 0.00 | 0.86 |
73 | 74 | 6.946583 | AGAAATTCAGCCATGCAGTCATATAT | 59.053 | 34.615 | 0.00 | 0.00 | 0.00 | 0.86 |
74 | 75 | 6.301486 | AGAAATTCAGCCATGCAGTCATATA | 58.699 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
75 | 76 | 5.138276 | AGAAATTCAGCCATGCAGTCATAT | 58.862 | 37.500 | 0.00 | 0.00 | 0.00 | 1.78 |
78 | 79 | 2.799017 | AGAAATTCAGCCATGCAGTCA | 58.201 | 42.857 | 0.00 | 0.00 | 0.00 | 3.41 |
97 | 98 | 2.713895 | TGTCAGTCTCTGCGAGAAAG | 57.286 | 50.000 | 9.35 | 6.16 | 40.59 | 2.62 |
99 | 100 | 2.822561 | AGATTGTCAGTCTCTGCGAGAA | 59.177 | 45.455 | 9.35 | 0.00 | 40.59 | 2.87 |
114 | 115 | 5.300411 | TCAGCCATGTGATCATAGATTGT | 57.700 | 39.130 | 0.00 | 0.00 | 32.47 | 2.71 |
115 | 116 | 6.628919 | TTTCAGCCATGTGATCATAGATTG | 57.371 | 37.500 | 0.00 | 0.00 | 32.47 | 2.67 |
118 | 119 | 6.183810 | AGATTTCAGCCATGTGATCATAGA | 57.816 | 37.500 | 0.00 | 0.00 | 32.47 | 1.98 |
127 | 128 | 2.485426 | CGACACAAGATTTCAGCCATGT | 59.515 | 45.455 | 0.00 | 0.00 | 0.00 | 3.21 |
128 | 129 | 2.743664 | TCGACACAAGATTTCAGCCATG | 59.256 | 45.455 | 0.00 | 0.00 | 0.00 | 3.66 |
169 | 170 | 2.683768 | AGGGAATAGAGTTCAGCGGAT | 58.316 | 47.619 | 0.00 | 0.00 | 0.00 | 4.18 |
178 | 179 | 4.738132 | ACCTCTTAGGGTAGGGAATAGAGT | 59.262 | 45.833 | 0.00 | 0.00 | 40.58 | 3.24 |
196 | 197 | 1.416401 | ACACATTCACACGGAACCTCT | 59.584 | 47.619 | 0.00 | 0.00 | 38.60 | 3.69 |
199 | 202 | 2.676342 | GGATACACATTCACACGGAACC | 59.324 | 50.000 | 0.00 | 0.00 | 38.60 | 3.62 |
201 | 204 | 3.686916 | TGGATACACATTCACACGGAA | 57.313 | 42.857 | 0.00 | 0.00 | 46.17 | 4.30 |
247 | 250 | 7.971168 | CCTCTATATATAGTTGTTTCAGAGCCG | 59.029 | 40.741 | 17.44 | 0.00 | 0.00 | 5.52 |
358 | 370 | 9.533253 | CAAGTGATTTTTGTCAACCTCTAAAAT | 57.467 | 29.630 | 0.00 | 0.00 | 34.76 | 1.82 |
400 | 414 | 4.582240 | TGACATGCCAAATGTTGACAAGTA | 59.418 | 37.500 | 0.00 | 0.00 | 25.38 | 2.24 |
434 | 448 | 5.263599 | TGAATTAGGATGCTGATTGGTTGT | 58.736 | 37.500 | 9.01 | 0.00 | 0.00 | 3.32 |
473 | 487 | 3.055094 | GCAAGACCATAACCAGGAGAGAA | 60.055 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
549 | 570 | 1.374947 | CCACCACCACCAGTACAGG | 59.625 | 63.158 | 2.14 | 2.14 | 0.00 | 4.00 |
579 | 600 | 3.756933 | AAAAATTGAGTGGCTGCACAT | 57.243 | 38.095 | 0.50 | 0.00 | 0.00 | 3.21 |
598 | 619 | 1.284313 | GGGCCCCCAATTTCATCAAA | 58.716 | 50.000 | 12.23 | 0.00 | 35.81 | 2.69 |
599 | 620 | 0.975040 | CGGGCCCCCAATTTCATCAA | 60.975 | 55.000 | 18.66 | 0.00 | 35.37 | 2.57 |
755 | 777 | 4.847516 | CTCGCGCCGGTCGATCAA | 62.848 | 66.667 | 20.06 | 0.77 | 41.67 | 2.57 |
952 | 1000 | 4.855340 | TGGAATTAAAGTCAAGCTAGGGG | 58.145 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
967 | 1017 | 3.794399 | TCTCCTCTCCTCTCCTGGAATTA | 59.206 | 47.826 | 0.00 | 0.00 | 35.43 | 1.40 |
974 | 1024 | 1.522900 | CTCCTCTCCTCTCCTCTCCT | 58.477 | 60.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1026 | 1080 | 1.544825 | CCGCCCTCTCCTTCTTCACA | 61.545 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
1202 | 1284 | 3.181471 | CCAAGTGACTCAGCCGAGATTAT | 60.181 | 47.826 | 3.36 | 0.00 | 42.34 | 1.28 |
1204 | 1286 | 1.066573 | CCAAGTGACTCAGCCGAGATT | 60.067 | 52.381 | 3.36 | 0.00 | 42.34 | 2.40 |
1229 | 1315 | 0.949105 | CAGCCACACTCGTACAACCC | 60.949 | 60.000 | 0.00 | 0.00 | 0.00 | 4.11 |
1292 | 1764 | 2.224606 | CATCTTTGCCCACGATATGCT | 58.775 | 47.619 | 0.00 | 0.00 | 0.00 | 3.79 |
1305 | 1777 | 5.065731 | CCTCTAAGCAAGGTTAGCATCTTTG | 59.934 | 44.000 | 12.81 | 0.00 | 31.10 | 2.77 |
1306 | 1778 | 5.189180 | CCTCTAAGCAAGGTTAGCATCTTT | 58.811 | 41.667 | 12.81 | 0.00 | 31.10 | 2.52 |
1307 | 1779 | 4.775236 | CCTCTAAGCAAGGTTAGCATCTT | 58.225 | 43.478 | 12.81 | 0.00 | 31.10 | 2.40 |
1309 | 1781 | 2.875317 | GCCTCTAAGCAAGGTTAGCATC | 59.125 | 50.000 | 12.81 | 2.66 | 36.21 | 3.91 |
1310 | 1782 | 2.422093 | GGCCTCTAAGCAAGGTTAGCAT | 60.422 | 50.000 | 12.81 | 0.00 | 36.21 | 3.79 |
1311 | 1783 | 1.065418 | GGCCTCTAAGCAAGGTTAGCA | 60.065 | 52.381 | 12.81 | 3.60 | 36.21 | 3.49 |
1312 | 1784 | 1.669604 | GGCCTCTAAGCAAGGTTAGC | 58.330 | 55.000 | 12.81 | 4.24 | 36.21 | 3.09 |
1314 | 1786 | 1.563924 | TCGGCCTCTAAGCAAGGTTA | 58.436 | 50.000 | 0.00 | 0.00 | 36.21 | 2.85 |
1363 | 1839 | 5.189934 | TCCCTCAAAATACTCTCCTTCCTTC | 59.810 | 44.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1364 | 1840 | 5.101529 | TCCCTCAAAATACTCTCCTTCCTT | 58.898 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
1377 | 1853 | 2.893489 | GTGTCCTTTGCTCCCTCAAAAT | 59.107 | 45.455 | 0.00 | 0.00 | 35.75 | 1.82 |
1386 | 1862 | 1.261619 | CGTTGTGAGTGTCCTTTGCTC | 59.738 | 52.381 | 0.00 | 0.00 | 0.00 | 4.26 |
1398 | 1874 | 3.482786 | GTCTAAAAGCATGCGTTGTGAG | 58.517 | 45.455 | 19.65 | 15.95 | 0.00 | 3.51 |
1424 | 1907 | 0.321210 | CGTGTTGTGATACCCCTGCA | 60.321 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1431 | 1914 | 1.136252 | CACTGCAGCGTGTTGTGATAC | 60.136 | 52.381 | 15.27 | 0.00 | 0.00 | 2.24 |
1432 | 1915 | 1.147473 | CACTGCAGCGTGTTGTGATA | 58.853 | 50.000 | 15.27 | 0.00 | 0.00 | 2.15 |
1459 | 1944 | 7.362142 | GGGACAGAAATCAAAGTTTCAGGTATC | 60.362 | 40.741 | 2.68 | 0.00 | 39.88 | 2.24 |
1461 | 1946 | 5.768164 | GGGACAGAAATCAAAGTTTCAGGTA | 59.232 | 40.000 | 2.68 | 0.00 | 39.88 | 3.08 |
1463 | 1948 | 4.584325 | TGGGACAGAAATCAAAGTTTCAGG | 59.416 | 41.667 | 2.68 | 0.00 | 39.88 | 3.86 |
1480 | 1965 | 5.076182 | TGCAATTATGAAGAGTTTGGGACA | 58.924 | 37.500 | 0.00 | 0.00 | 0.00 | 4.02 |
1481 | 1966 | 5.643379 | TGCAATTATGAAGAGTTTGGGAC | 57.357 | 39.130 | 0.00 | 0.00 | 0.00 | 4.46 |
1528 | 2016 | 4.563184 | AGCACTCGCGCTTAAATATATAGC | 59.437 | 41.667 | 5.56 | 0.00 | 45.49 | 2.97 |
1536 | 2024 | 2.460918 | GATCTAGCACTCGCGCTTAAA | 58.539 | 47.619 | 5.56 | 0.00 | 45.49 | 1.52 |
1539 | 2027 | 1.066587 | GGATCTAGCACTCGCGCTT | 59.933 | 57.895 | 5.56 | 0.00 | 45.49 | 4.68 |
1541 | 2029 | 1.659954 | CTGGATCTAGCACTCGCGC | 60.660 | 63.158 | 0.00 | 0.00 | 45.49 | 6.86 |
1549 | 2037 | 4.024218 | GTGATGTCAATTGCTGGATCTAGC | 60.024 | 45.833 | 23.11 | 23.11 | 43.95 | 3.42 |
1550 | 2038 | 5.121105 | TGTGATGTCAATTGCTGGATCTAG | 58.879 | 41.667 | 0.86 | 0.86 | 0.00 | 2.43 |
1551 | 2039 | 5.101648 | TGTGATGTCAATTGCTGGATCTA | 57.898 | 39.130 | 0.00 | 0.00 | 0.00 | 1.98 |
1553 | 2041 | 4.157289 | ACTTGTGATGTCAATTGCTGGATC | 59.843 | 41.667 | 0.00 | 0.35 | 0.00 | 3.36 |
1557 | 2045 | 4.613944 | ACAACTTGTGATGTCAATTGCTG | 58.386 | 39.130 | 0.00 | 0.00 | 0.00 | 4.41 |
1578 | 2072 | 7.497595 | TCTATGGTGACTTACATGGACATAAC | 58.502 | 38.462 | 0.00 | 0.00 | 30.94 | 1.89 |
1583 | 2077 | 4.360563 | CGTCTATGGTGACTTACATGGAC | 58.639 | 47.826 | 10.03 | 10.03 | 46.04 | 4.02 |
1584 | 2078 | 3.181479 | GCGTCTATGGTGACTTACATGGA | 60.181 | 47.826 | 0.00 | 0.00 | 35.00 | 3.41 |
1586 | 2080 | 2.789339 | CGCGTCTATGGTGACTTACATG | 59.211 | 50.000 | 0.00 | 0.00 | 35.00 | 3.21 |
1587 | 2081 | 2.798499 | GCGCGTCTATGGTGACTTACAT | 60.798 | 50.000 | 8.43 | 0.00 | 35.00 | 2.29 |
1589 | 2083 | 1.197910 | GCGCGTCTATGGTGACTTAC | 58.802 | 55.000 | 8.43 | 0.00 | 35.00 | 2.34 |
1591 | 2085 | 0.179134 | GAGCGCGTCTATGGTGACTT | 60.179 | 55.000 | 8.43 | 0.00 | 35.00 | 3.01 |
1593 | 2087 | 0.661552 | TAGAGCGCGTCTATGGTGAC | 59.338 | 55.000 | 8.43 | 0.00 | 36.64 | 3.67 |
1594 | 2088 | 0.945099 | CTAGAGCGCGTCTATGGTGA | 59.055 | 55.000 | 8.43 | 0.00 | 37.14 | 4.02 |
1595 | 2089 | 0.945099 | TCTAGAGCGCGTCTATGGTG | 59.055 | 55.000 | 8.43 | 2.69 | 37.14 | 4.17 |
1596 | 2090 | 0.945813 | GTCTAGAGCGCGTCTATGGT | 59.054 | 55.000 | 8.43 | 0.00 | 37.14 | 3.55 |
1598 | 2092 | 1.330829 | TGTGTCTAGAGCGCGTCTATG | 59.669 | 52.381 | 8.43 | 8.04 | 37.14 | 2.23 |
1599 | 2093 | 1.664873 | TGTGTCTAGAGCGCGTCTAT | 58.335 | 50.000 | 8.43 | 5.39 | 37.14 | 1.98 |
1600 | 2094 | 1.397343 | CTTGTGTCTAGAGCGCGTCTA | 59.603 | 52.381 | 8.43 | 12.55 | 36.64 | 2.59 |
1601 | 2095 | 0.169230 | CTTGTGTCTAGAGCGCGTCT | 59.831 | 55.000 | 8.43 | 12.04 | 39.59 | 4.18 |
1605 | 2099 | 1.079819 | TGCCTTGTGTCTAGAGCGC | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 5.92 |
1610 | 2104 | 1.792949 | GTTGTCGTGCCTTGTGTCTAG | 59.207 | 52.381 | 0.00 | 0.00 | 0.00 | 2.43 |
1628 | 2632 | 6.149973 | CACATGATCTCTTTACACCATGTGTT | 59.850 | 38.462 | 19.29 | 0.00 | 45.08 | 3.32 |
1676 | 3958 | 1.951602 | GCTGGGGTTTTCACGTTAGTT | 59.048 | 47.619 | 0.00 | 0.00 | 0.00 | 2.24 |
1713 | 4610 | 3.081061 | CTCAAACCATTTGTCGGATCCA | 58.919 | 45.455 | 13.41 | 0.00 | 41.36 | 3.41 |
1719 | 4616 | 7.081349 | TGTTTTATAGCTCAAACCATTTGTCG | 58.919 | 34.615 | 11.58 | 0.00 | 41.36 | 4.35 |
1751 | 4739 | 7.874940 | TGACATCAACACATTAAGAAGGAAAG | 58.125 | 34.615 | 0.00 | 0.00 | 0.00 | 2.62 |
1759 | 4780 | 6.023435 | CACGGAATGACATCAACACATTAAG | 58.977 | 40.000 | 0.00 | 0.00 | 34.94 | 1.85 |
1791 | 5800 | 6.017934 | ACTCCTGTTACAATATGCGCAATAAG | 60.018 | 38.462 | 17.11 | 8.05 | 0.00 | 1.73 |
1792 | 5801 | 5.820423 | ACTCCTGTTACAATATGCGCAATAA | 59.180 | 36.000 | 17.11 | 2.95 | 0.00 | 1.40 |
1793 | 5802 | 5.236263 | CACTCCTGTTACAATATGCGCAATA | 59.764 | 40.000 | 17.11 | 8.17 | 0.00 | 1.90 |
1794 | 5803 | 4.035558 | CACTCCTGTTACAATATGCGCAAT | 59.964 | 41.667 | 17.11 | 6.72 | 0.00 | 3.56 |
1889 | 5898 | 4.037803 | TGGTTGTCGTACTTGCAGTAGTTA | 59.962 | 41.667 | 0.00 | 0.00 | 30.12 | 2.24 |
2123 | 6132 | 3.580895 | TGTGAGCTTACCACACCTGATTA | 59.419 | 43.478 | 6.13 | 0.00 | 39.36 | 1.75 |
2660 | 6839 | 1.357690 | CGGCGCGTAGAACAGGATA | 59.642 | 57.895 | 8.43 | 0.00 | 0.00 | 2.59 |
2984 | 7251 | 1.433879 | CGGAAAGATCTCGCTCGGT | 59.566 | 57.895 | 0.00 | 0.00 | 0.00 | 4.69 |
3358 | 7634 | 4.039973 | TCCTATCAAAACAGTCGTGGTTCT | 59.960 | 41.667 | 0.00 | 0.00 | 29.78 | 3.01 |
3363 | 7639 | 3.123621 | GTGCTCCTATCAAAACAGTCGTG | 59.876 | 47.826 | 0.00 | 0.00 | 0.00 | 4.35 |
3364 | 7640 | 3.244078 | TGTGCTCCTATCAAAACAGTCGT | 60.244 | 43.478 | 0.00 | 0.00 | 0.00 | 4.34 |
3368 | 7644 | 3.441222 | TGCATGTGCTCCTATCAAAACAG | 59.559 | 43.478 | 6.55 | 0.00 | 42.66 | 3.16 |
3479 | 7755 | 2.091098 | ACACCACACCAGTACCACTA | 57.909 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
3480 | 7756 | 1.209621 | AACACCACACCAGTACCACT | 58.790 | 50.000 | 0.00 | 0.00 | 0.00 | 4.00 |
3489 | 7765 | 2.301870 | TGGAGATGACTAACACCACACC | 59.698 | 50.000 | 0.00 | 0.00 | 0.00 | 4.16 |
3637 | 7913 | 8.716646 | TCATCGTAGACATACATTTTTGTCAT | 57.283 | 30.769 | 5.44 | 0.00 | 43.72 | 3.06 |
3710 | 7990 | 7.713518 | TGGTCTCCTAGGACAATATATCTCAT | 58.286 | 38.462 | 7.62 | 0.00 | 37.91 | 2.90 |
3714 | 7994 | 9.041354 | AGAAATGGTCTCCTAGGACAATATATC | 57.959 | 37.037 | 7.62 | 2.46 | 37.91 | 1.63 |
3716 | 7996 | 8.798975 | AAGAAATGGTCTCCTAGGACAATATA | 57.201 | 34.615 | 7.62 | 0.00 | 34.56 | 0.86 |
3727 | 8007 | 9.898152 | CTTCTCTTATTTAAGAAATGGTCTCCT | 57.102 | 33.333 | 1.97 | 0.00 | 41.37 | 3.69 |
3728 | 8008 | 9.892130 | TCTTCTCTTATTTAAGAAATGGTCTCC | 57.108 | 33.333 | 1.97 | 0.00 | 41.37 | 3.71 |
3787 | 8067 | 8.951787 | AGTGCCACGTATAATAAATGTTAAGA | 57.048 | 30.769 | 0.00 | 0.00 | 0.00 | 2.10 |
3792 | 8072 | 5.925509 | AGGAGTGCCACGTATAATAAATGT | 58.074 | 37.500 | 0.00 | 0.00 | 36.29 | 2.71 |
3800 | 8080 | 6.720112 | ACTATTTTAGGAGTGCCACGTATA | 57.280 | 37.500 | 0.00 | 0.00 | 36.29 | 1.47 |
3857 | 8137 | 4.351127 | ACCGTGTCCTTTTAGAGGTCTAT | 58.649 | 43.478 | 0.00 | 0.00 | 46.39 | 1.98 |
3877 | 8157 | 2.548480 | GTCTGGCTGCGGATAAAATACC | 59.452 | 50.000 | 0.00 | 0.00 | 0.00 | 2.73 |
3936 | 8216 | 5.363580 | AGAACCCTTGAATCACAACACAAAT | 59.636 | 36.000 | 0.00 | 0.00 | 34.56 | 2.32 |
3943 | 8223 | 4.099266 | CCAAACAGAACCCTTGAATCACAA | 59.901 | 41.667 | 0.00 | 0.00 | 36.97 | 3.33 |
3959 | 8239 | 1.529226 | TATCAACCGTGCCCAAACAG | 58.471 | 50.000 | 0.00 | 0.00 | 0.00 | 3.16 |
3971 | 8251 | 7.407337 | CGTAGTTAAGCCTGAAAATATCAACC | 58.593 | 38.462 | 0.00 | 0.00 | 37.67 | 3.77 |
3982 | 8262 | 1.890489 | TGACAGCGTAGTTAAGCCTGA | 59.110 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
4022 | 8302 | 0.325296 | AGATCAGGTCCACGCCCTTA | 60.325 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
4030 | 8310 | 4.161189 | GTCTGAATTGAGAGATCAGGTCCA | 59.839 | 45.833 | 0.00 | 0.00 | 40.71 | 4.02 |
4035 | 8315 | 6.424509 | GCAATAGGTCTGAATTGAGAGATCAG | 59.575 | 42.308 | 0.00 | 0.00 | 41.49 | 2.90 |
4042 | 8322 | 4.162040 | AGGGCAATAGGTCTGAATTGAG | 57.838 | 45.455 | 5.05 | 0.00 | 35.53 | 3.02 |
4054 | 8334 | 9.362151 | TCCCAAAGTTATTAATAAGGGCAATAG | 57.638 | 33.333 | 18.96 | 3.78 | 35.03 | 1.73 |
4083 | 8363 | 0.685097 | GCATAGCCTATGACGGGGAA | 59.315 | 55.000 | 15.88 | 0.00 | 38.45 | 3.97 |
4084 | 8364 | 1.192146 | GGCATAGCCTATGACGGGGA | 61.192 | 60.000 | 15.88 | 0.00 | 46.69 | 4.81 |
4103 | 8387 | 1.402194 | GCAACAGGTGAGAGACGAGAG | 60.402 | 57.143 | 0.00 | 0.00 | 0.00 | 3.20 |
4127 | 8411 | 6.600882 | AACTGATAAGGGAAAAGAGTACGA | 57.399 | 37.500 | 0.00 | 0.00 | 0.00 | 3.43 |
4136 | 8420 | 4.898861 | ACAAAGGCAAACTGATAAGGGAAA | 59.101 | 37.500 | 0.00 | 0.00 | 0.00 | 3.13 |
4180 | 8464 | 2.100252 | TCGTGAAGACAAAGAACTCCGT | 59.900 | 45.455 | 0.00 | 0.00 | 0.00 | 4.69 |
4192 | 8476 | 6.662414 | TGTCATGGATAATTTCGTGAAGAC | 57.338 | 37.500 | 0.00 | 0.00 | 0.00 | 3.01 |
4231 | 8515 | 6.018913 | GTCTAGCTTAAGGATTACCGCTTTTC | 60.019 | 42.308 | 4.29 | 0.00 | 38.21 | 2.29 |
4232 | 8516 | 5.816258 | GTCTAGCTTAAGGATTACCGCTTTT | 59.184 | 40.000 | 4.29 | 0.00 | 38.21 | 2.27 |
4238 | 8522 | 7.783042 | TCTCAAAGTCTAGCTTAAGGATTACC | 58.217 | 38.462 | 4.29 | 0.00 | 36.17 | 2.85 |
4253 | 8537 | 5.866633 | CGAGTCATAAGCTTTCTCAAAGTCT | 59.133 | 40.000 | 3.20 | 0.00 | 40.64 | 3.24 |
4282 | 8566 | 6.330278 | AGGACTTGCTGTAAAAACTTTCAAC | 58.670 | 36.000 | 0.00 | 0.00 | 0.00 | 3.18 |
4286 | 8570 | 6.039382 | CCAGTAGGACTTGCTGTAAAAACTTT | 59.961 | 38.462 | 2.15 | 0.00 | 36.89 | 2.66 |
4287 | 8571 | 5.531287 | CCAGTAGGACTTGCTGTAAAAACTT | 59.469 | 40.000 | 2.15 | 0.00 | 36.89 | 2.66 |
4288 | 8572 | 5.063880 | CCAGTAGGACTTGCTGTAAAAACT | 58.936 | 41.667 | 2.15 | 0.00 | 36.89 | 2.66 |
4289 | 8573 | 4.320275 | GCCAGTAGGACTTGCTGTAAAAAC | 60.320 | 45.833 | 2.15 | 0.00 | 34.40 | 2.43 |
4290 | 8574 | 3.818773 | GCCAGTAGGACTTGCTGTAAAAA | 59.181 | 43.478 | 2.15 | 0.00 | 34.40 | 1.94 |
4291 | 8575 | 3.181449 | TGCCAGTAGGACTTGCTGTAAAA | 60.181 | 43.478 | 2.15 | 0.00 | 37.71 | 1.52 |
4292 | 8576 | 2.370519 | TGCCAGTAGGACTTGCTGTAAA | 59.629 | 45.455 | 2.15 | 0.00 | 37.71 | 2.01 |
4293 | 8577 | 1.974957 | TGCCAGTAGGACTTGCTGTAA | 59.025 | 47.619 | 2.15 | 0.00 | 37.71 | 2.41 |
4294 | 8578 | 1.639722 | TGCCAGTAGGACTTGCTGTA | 58.360 | 50.000 | 2.15 | 0.00 | 37.71 | 2.74 |
4295 | 8579 | 0.764890 | TTGCCAGTAGGACTTGCTGT | 59.235 | 50.000 | 2.15 | 0.00 | 37.71 | 4.40 |
4296 | 8580 | 1.896220 | TTTGCCAGTAGGACTTGCTG | 58.104 | 50.000 | 4.55 | 0.00 | 37.71 | 4.41 |
4297 | 8581 | 2.508526 | CTTTTGCCAGTAGGACTTGCT | 58.491 | 47.619 | 4.55 | 0.00 | 37.71 | 3.91 |
4298 | 8582 | 1.541588 | CCTTTTGCCAGTAGGACTTGC | 59.458 | 52.381 | 0.00 | 0.00 | 37.39 | 4.01 |
4299 | 8583 | 1.541588 | GCCTTTTGCCAGTAGGACTTG | 59.458 | 52.381 | 0.00 | 0.00 | 36.89 | 3.16 |
4300 | 8584 | 1.425448 | AGCCTTTTGCCAGTAGGACTT | 59.575 | 47.619 | 0.00 | 0.00 | 42.71 | 3.01 |
4301 | 8585 | 1.003696 | GAGCCTTTTGCCAGTAGGACT | 59.996 | 52.381 | 0.00 | 0.00 | 42.71 | 3.85 |
4302 | 8586 | 1.003696 | AGAGCCTTTTGCCAGTAGGAC | 59.996 | 52.381 | 0.00 | 0.00 | 42.71 | 3.85 |
4303 | 8587 | 1.003580 | CAGAGCCTTTTGCCAGTAGGA | 59.996 | 52.381 | 0.00 | 0.00 | 42.71 | 2.94 |
4304 | 8588 | 1.003580 | TCAGAGCCTTTTGCCAGTAGG | 59.996 | 52.381 | 0.00 | 0.00 | 42.71 | 3.18 |
4305 | 8589 | 2.479566 | TCAGAGCCTTTTGCCAGTAG | 57.520 | 50.000 | 0.00 | 0.00 | 42.71 | 2.57 |
4306 | 8590 | 2.553028 | CCTTCAGAGCCTTTTGCCAGTA | 60.553 | 50.000 | 0.00 | 0.00 | 42.71 | 2.74 |
4307 | 8591 | 1.613836 | CTTCAGAGCCTTTTGCCAGT | 58.386 | 50.000 | 0.00 | 0.00 | 42.71 | 4.00 |
4308 | 8592 | 0.886563 | CCTTCAGAGCCTTTTGCCAG | 59.113 | 55.000 | 0.00 | 0.00 | 42.71 | 4.85 |
4309 | 8593 | 0.478072 | TCCTTCAGAGCCTTTTGCCA | 59.522 | 50.000 | 0.00 | 0.00 | 42.71 | 4.92 |
4310 | 8594 | 1.172175 | CTCCTTCAGAGCCTTTTGCC | 58.828 | 55.000 | 0.00 | 0.00 | 42.71 | 4.52 |
4319 | 8603 | 4.751767 | ATAGACAAAGGCTCCTTCAGAG | 57.248 | 45.455 | 1.05 | 0.00 | 46.29 | 3.35 |
4320 | 8604 | 4.651503 | CCTATAGACAAAGGCTCCTTCAGA | 59.348 | 45.833 | 0.00 | 0.00 | 34.84 | 3.27 |
4321 | 8605 | 4.202305 | CCCTATAGACAAAGGCTCCTTCAG | 60.202 | 50.000 | 0.00 | 1.09 | 34.84 | 3.02 |
4322 | 8606 | 3.711704 | CCCTATAGACAAAGGCTCCTTCA | 59.288 | 47.826 | 0.00 | 0.00 | 34.84 | 3.02 |
4323 | 8607 | 4.344359 | CCCTATAGACAAAGGCTCCTTC | 57.656 | 50.000 | 0.00 | 0.00 | 34.84 | 3.46 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.