Multiple sequence alignment - TraesCS5A01G226700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G226700 chr5A 100.000 6653 0 0 1 6653 442510175 442503523 0.000000e+00 12286.0
1 TraesCS5A01G226700 chr5A 91.229 1505 117 7 4122 5615 442681576 442680076 0.000000e+00 2034.0
2 TraesCS5A01G226700 chr5A 91.034 435 39 0 5174 5608 442291222 442290788 7.430000e-164 588.0
3 TraesCS5A01G226700 chr5A 84.950 299 17 17 992 1288 442682377 442682105 1.830000e-70 278.0
4 TraesCS5A01G226700 chr5A 89.881 168 12 3 986 1148 442294359 442294192 1.880000e-50 211.0
5 TraesCS5A01G226700 chr5A 87.234 141 6 6 1 136 442554910 442554777 4.160000e-32 150.0
6 TraesCS5A01G226700 chr5A 79.736 227 15 15 223 445 442554755 442554556 1.160000e-27 135.0
7 TraesCS5A01G226700 chr5D 95.349 1806 68 6 4106 5908 341242753 341240961 0.000000e+00 2856.0
8 TraesCS5A01G226700 chr5D 91.464 1523 113 8 4106 5615 341532376 341530858 0.000000e+00 2076.0
9 TraesCS5A01G226700 chr5D 88.740 1492 145 15 4115 5589 556722660 556721175 0.000000e+00 1803.0
10 TraesCS5A01G226700 chr5D 89.210 1418 56 32 1 1367 341246982 341245611 0.000000e+00 1681.0
11 TraesCS5A01G226700 chr5D 90.266 976 84 11 2232 3203 341244102 341243134 0.000000e+00 1266.0
12 TraesCS5A01G226700 chr5D 86.326 1097 126 10 4494 5589 560107204 560106131 0.000000e+00 1173.0
13 TraesCS5A01G226700 chr5D 90.432 648 55 6 6007 6651 341240932 341240289 0.000000e+00 846.0
14 TraesCS5A01G226700 chr5D 86.935 620 67 9 4110 4720 341261487 341260873 0.000000e+00 684.0
15 TraesCS5A01G226700 chr5D 89.357 451 40 7 1756 2203 341244718 341244273 1.620000e-155 560.0
16 TraesCS5A01G226700 chr5D 78.521 852 100 49 331 1145 341312426 341311621 3.610000e-132 483.0
17 TraesCS5A01G226700 chr5D 86.893 412 29 9 1366 1770 341245582 341245189 7.920000e-119 438.0
18 TraesCS5A01G226700 chr5D 90.850 306 24 4 3209 3511 341243048 341242744 2.230000e-109 407.0
19 TraesCS5A01G226700 chr5D 88.822 331 37 0 4135 4465 560107701 560107371 2.230000e-109 407.0
20 TraesCS5A01G226700 chr5D 80.131 458 44 25 797 1236 341533300 341532872 1.400000e-76 298.0
21 TraesCS5A01G226700 chr5D 87.179 195 22 3 3200 3392 445393877 445394070 1.120000e-52 219.0
22 TraesCS5A01G226700 chr5D 91.333 150 13 0 996 1145 556723223 556723074 8.750000e-49 206.0
23 TraesCS5A01G226700 chr5D 79.193 322 27 20 38 351 341314268 341313979 3.170000e-43 187.0
24 TraesCS5A01G226700 chr5B 95.443 1558 45 5 4106 5660 400776655 400778189 0.000000e+00 2460.0
25 TraesCS5A01G226700 chr5B 91.532 1547 102 13 4140 5661 400999085 400997543 0.000000e+00 2104.0
26 TraesCS5A01G226700 chr5B 85.743 1487 191 16 4132 5608 400564253 400562778 0.000000e+00 1552.0
27 TraesCS5A01G226700 chr5B 89.627 993 88 10 2232 3214 400775315 400776302 0.000000e+00 1249.0
28 TraesCS5A01G226700 chr5B 89.265 857 56 16 1367 2214 400773797 400774626 0.000000e+00 1040.0
29 TraesCS5A01G226700 chr5B 94.792 576 19 4 786 1361 400773024 400773588 0.000000e+00 887.0
30 TraesCS5A01G226700 chr5B 89.833 659 34 8 159 799 400766064 400766707 0.000000e+00 815.0
31 TraesCS5A01G226700 chr5B 82.872 794 62 32 1 770 400934074 400933331 0.000000e+00 645.0
32 TraesCS5A01G226700 chr5B 86.538 572 54 9 6014 6583 400780874 400781424 5.700000e-170 608.0
33 TraesCS5A01G226700 chr5B 86.513 304 22 13 3209 3511 400776379 400776664 3.870000e-82 316.0
34 TraesCS5A01G226700 chr5B 86.694 248 22 9 992 1236 400999832 400999593 1.420000e-66 265.0
35 TraesCS5A01G226700 chr5B 90.446 157 12 1 995 1148 400566227 400566071 3.150000e-48 204.0
36 TraesCS5A01G226700 chr5B 83.582 134 16 6 3086 3214 543217953 543218085 3.260000e-23 121.0
37 TraesCS5A01G226700 chr5B 89.474 57 5 1 6597 6653 69128739 69128794 3.330000e-08 71.3
38 TraesCS5A01G226700 chr5B 90.741 54 4 1 6597 6650 593555001 593555053 3.330000e-08 71.3
39 TraesCS5A01G226700 chr5B 90.566 53 4 1 6597 6649 593471001 593471052 1.200000e-07 69.4
40 TraesCS5A01G226700 chr4A 88.529 1482 142 9 4137 5590 605086911 605085430 0.000000e+00 1770.0
41 TraesCS5A01G226700 chr4A 88.587 184 17 4 973 1154 605087341 605087160 3.120000e-53 220.0
42 TraesCS5A01G226700 chr4B 77.700 574 98 19 3553 4106 364774576 364774013 2.310000e-84 324.0
43 TraesCS5A01G226700 chr1D 75.477 681 128 27 2369 3027 349495326 349495989 5.040000e-76 296.0
44 TraesCS5A01G226700 chr1D 84.492 187 22 7 3209 3391 127505580 127505763 1.910000e-40 178.0
45 TraesCS5A01G226700 chr7D 76.606 607 93 35 3544 4109 208219714 208220312 8.440000e-74 289.0
46 TraesCS5A01G226700 chr7D 86.391 169 17 6 3233 3397 69595254 69595088 5.300000e-41 180.0
47 TraesCS5A01G226700 chr7D 74.706 340 74 9 2233 2563 208217506 208217170 2.500000e-29 141.0
48 TraesCS5A01G226700 chr3D 88.442 199 17 6 3200 3395 328700270 328700075 1.120000e-57 235.0
49 TraesCS5A01G226700 chr3D 87.162 148 11 4 3072 3214 313281986 313282130 1.920000e-35 161.0
50 TraesCS5A01G226700 chr3B 78.385 384 58 19 2233 2597 798347436 798347813 6.710000e-55 226.0
51 TraesCS5A01G226700 chr3B 90.441 136 10 3 3080 3214 406557344 406557211 6.860000e-40 176.0
52 TraesCS5A01G226700 chr2B 73.913 598 116 24 3538 4106 160284004 160283418 3.150000e-48 204.0
53 TraesCS5A01G226700 chr2B 79.612 206 29 7 6321 6523 653795794 653795599 1.160000e-27 135.0
54 TraesCS5A01G226700 chr7A 85.638 188 20 6 3209 3392 729448338 729448522 2.450000e-44 191.0
55 TraesCS5A01G226700 chr7A 85.106 188 21 6 3209 3392 729495255 729495439 1.140000e-42 185.0
56 TraesCS5A01G226700 chr7A 76.232 345 65 12 2233 2563 221260722 221260381 4.130000e-37 167.0
57 TraesCS5A01G226700 chr7A 95.556 45 2 0 3079 3123 173414121 173414165 9.250000e-09 73.1
58 TraesCS5A01G226700 chr7A 92.000 50 3 1 6597 6645 641229789 641229740 1.200000e-07 69.4
59 TraesCS5A01G226700 chr3A 87.879 165 17 3 3233 3395 443426504 443426341 2.450000e-44 191.0
60 TraesCS5A01G226700 chr3A 91.538 130 9 2 3086 3214 418773504 418773376 1.910000e-40 178.0
61 TraesCS5A01G226700 chr6D 85.792 183 18 6 3212 3392 394589305 394589481 3.170000e-43 187.0
62 TraesCS5A01G226700 chr6D 88.889 54 4 2 6596 6649 79621802 79621751 1.550000e-06 65.8
63 TraesCS5A01G226700 chr7B 82.609 161 24 4 6126 6284 395259971 395260129 9.000000e-29 139.0
64 TraesCS5A01G226700 chr7B 91.837 49 4 0 6597 6645 500167694 500167742 1.200000e-07 69.4
65 TraesCS5A01G226700 chr2A 83.099 142 15 6 3079 3214 670954204 670954342 3.260000e-23 121.0
66 TraesCS5A01G226700 chr2A 82.787 122 15 5 6121 6242 760755660 760755545 3.280000e-18 104.0
67 TraesCS5A01G226700 chr2A 82.857 70 2 5 5908 5969 101837196 101837263 3.000000e-03 54.7
68 TraesCS5A01G226700 chr6B 80.519 154 24 4 6137 6288 712544780 712544929 5.450000e-21 113.0
69 TraesCS5A01G226700 chr6B 92.000 50 4 0 6596 6645 23285790 23285839 3.330000e-08 71.3
70 TraesCS5A01G226700 chr1B 77.654 179 23 16 6123 6288 443004609 443004783 7.100000e-15 93.5
71 TraesCS5A01G226700 chrUn 81.132 106 14 5 6189 6288 75090472 75090577 5.530000e-11 80.5
72 TraesCS5A01G226700 chr2D 90.741 54 4 1 6596 6649 351288794 351288742 3.330000e-08 71.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G226700 chr5A 442503523 442510175 6652 True 12286.000000 12286 100.000000 1 6653 1 chr5A.!!$R1 6652
1 TraesCS5A01G226700 chr5A 442680076 442682377 2301 True 1156.000000 2034 88.089500 992 5615 2 chr5A.!!$R4 4623
2 TraesCS5A01G226700 chr5A 442290788 442294359 3571 True 399.500000 588 90.457500 986 5608 2 chr5A.!!$R2 4622
3 TraesCS5A01G226700 chr5D 341530858 341533300 2442 True 1187.000000 2076 85.797500 797 5615 2 chr5D.!!$R4 4818
4 TraesCS5A01G226700 chr5D 341240289 341246982 6693 True 1150.571429 2856 90.336714 1 6651 7 chr5D.!!$R2 6650
5 TraesCS5A01G226700 chr5D 556721175 556723223 2048 True 1004.500000 1803 90.036500 996 5589 2 chr5D.!!$R5 4593
6 TraesCS5A01G226700 chr5D 560106131 560107701 1570 True 790.000000 1173 87.574000 4135 5589 2 chr5D.!!$R6 1454
7 TraesCS5A01G226700 chr5D 341260873 341261487 614 True 684.000000 684 86.935000 4110 4720 1 chr5D.!!$R1 610
8 TraesCS5A01G226700 chr5D 341311621 341314268 2647 True 335.000000 483 78.857000 38 1145 2 chr5D.!!$R3 1107
9 TraesCS5A01G226700 chr5B 400997543 400999832 2289 True 1184.500000 2104 89.113000 992 5661 2 chr5B.!!$R3 4669
10 TraesCS5A01G226700 chr5B 400773024 400781424 8400 False 1093.333333 2460 90.363000 786 6583 6 chr5B.!!$F6 5797
11 TraesCS5A01G226700 chr5B 400562778 400566227 3449 True 878.000000 1552 88.094500 995 5608 2 chr5B.!!$R2 4613
12 TraesCS5A01G226700 chr5B 400766064 400766707 643 False 815.000000 815 89.833000 159 799 1 chr5B.!!$F2 640
13 TraesCS5A01G226700 chr5B 400933331 400934074 743 True 645.000000 645 82.872000 1 770 1 chr5B.!!$R1 769
14 TraesCS5A01G226700 chr4A 605085430 605087341 1911 True 995.000000 1770 88.558000 973 5590 2 chr4A.!!$R1 4617
15 TraesCS5A01G226700 chr4B 364774013 364774576 563 True 324.000000 324 77.700000 3553 4106 1 chr4B.!!$R1 553
16 TraesCS5A01G226700 chr1D 349495326 349495989 663 False 296.000000 296 75.477000 2369 3027 1 chr1D.!!$F2 658
17 TraesCS5A01G226700 chr7D 208219714 208220312 598 False 289.000000 289 76.606000 3544 4109 1 chr7D.!!$F1 565
18 TraesCS5A01G226700 chr2B 160283418 160284004 586 True 204.000000 204 73.913000 3538 4106 1 chr2B.!!$R1 568

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
578 2193 0.035820 TGTGGGACAGCGGAATAACC 60.036 55.0 0.00 0.0 41.80 2.85 F
1518 3924 0.179034 GGAGGCTGGATGCTGTTAGG 60.179 60.0 0.00 0.0 42.39 2.69 F
1754 4678 0.323178 CCTCCCCATCATGCTATGCC 60.323 60.0 0.00 0.0 0.00 4.40 F
2890 6788 0.387750 GCGAAGGGCTTGCTCAAAAG 60.388 55.0 0.00 0.0 39.11 2.27 F
3004 6908 0.680061 AGGACGACCACTTCCTCAAC 59.320 55.0 6.71 0.0 40.09 3.18 F
3784 7791 0.252197 GGCCCAACTTCTACGACCAT 59.748 55.0 0.00 0.0 0.00 3.55 F
3974 7991 0.179129 TTCGTTTCCGTATCCGCTCC 60.179 55.0 0.00 0.0 35.01 4.70 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1911 4899 0.040425 GCTTGAAAACGGTCGCACAT 60.040 50.000 0.00 0.0 0.00 3.21 R
3271 7263 0.028770 TTGAGCTGTCGTTTTTGGCG 59.971 50.000 0.00 0.0 0.00 5.69 R
3511 7505 1.358152 TCCACTCCGTTTTCATCCCT 58.642 50.000 0.00 0.0 0.00 4.20 R
3756 7754 0.036388 GAAGTTGGGCCTCACATCGA 60.036 55.000 4.53 0.0 0.00 3.59 R
3943 7960 1.269051 GGAAACGAAAGCAGGTGTTGG 60.269 52.381 0.00 0.0 0.00 3.77 R
5612 9933 0.179034 GGCAAGAGCACTATCCCCAG 60.179 60.000 0.00 0.0 44.61 4.45 R
5860 12482 0.250166 AAACACTGACCACGCCCTAC 60.250 55.000 0.00 0.0 0.00 3.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 1.667212 TGCTATCATGAAGCAAGCACG 59.333 47.619 22.21 0.00 46.57 5.34
138 140 1.202639 AGATCGTAATCATTGCCGGCA 60.203 47.619 29.03 29.03 34.07 5.69
393 1994 1.445582 GTCCTCGCCACCTTACGTG 60.446 63.158 0.00 0.00 42.62 4.49
432 2033 1.460689 ACAAGGGAAGGACGGGACA 60.461 57.895 0.00 0.00 0.00 4.02
470 2081 3.737172 CAAAGCCAACGCCCGGAG 61.737 66.667 0.73 0.00 34.57 4.63
578 2193 0.035820 TGTGGGACAGCGGAATAACC 60.036 55.000 0.00 0.00 41.80 2.85
658 2298 3.142162 TGGCATCGGCATTGGCAG 61.142 61.111 11.10 3.62 43.77 4.85
772 2415 3.200887 ATCGGATCGAGCGAGGCAC 62.201 63.158 0.00 0.00 39.91 5.01
784 2427 0.443869 CGAGGCACGATTTGTTCCAG 59.556 55.000 0.00 0.00 45.77 3.86
1056 2734 3.081409 AGGGCGGCGGAGTACAAT 61.081 61.111 9.78 0.00 0.00 2.71
1256 2996 0.838608 ACTTGGGGTTCGGTTGTACA 59.161 50.000 0.00 0.00 0.00 2.90
1272 3012 3.349927 TGTACAGTACGAGTGTGGCTAT 58.650 45.455 6.23 0.00 33.15 2.97
1515 3921 2.249413 CTCGGAGGCTGGATGCTGTT 62.249 60.000 0.00 0.00 42.39 3.16
1517 3923 0.531532 CGGAGGCTGGATGCTGTTAG 60.532 60.000 0.00 0.00 42.39 2.34
1518 3924 0.179034 GGAGGCTGGATGCTGTTAGG 60.179 60.000 0.00 0.00 42.39 2.69
1519 3925 0.543749 GAGGCTGGATGCTGTTAGGT 59.456 55.000 0.00 0.00 42.39 3.08
1521 3927 1.355720 AGGCTGGATGCTGTTAGGTTT 59.644 47.619 0.00 0.00 42.39 3.27
1523 3929 2.945668 GGCTGGATGCTGTTAGGTTTAG 59.054 50.000 0.00 0.00 42.39 1.85
1524 3930 2.945668 GCTGGATGCTGTTAGGTTTAGG 59.054 50.000 0.00 0.00 38.95 2.69
1525 3931 3.622455 GCTGGATGCTGTTAGGTTTAGGT 60.622 47.826 0.00 0.00 38.95 3.08
1546 3961 7.790782 AGGTTATCAAAGAGAAGAGAGAGTT 57.209 36.000 0.00 0.00 0.00 3.01
1578 3994 4.131649 TGCAGGCAGTAAATACGTACAT 57.868 40.909 0.00 0.00 0.00 2.29
1641 4082 5.118050 CGTTGTAGCGATCTGTAACTTTGAA 59.882 40.000 0.00 0.00 0.00 2.69
1651 4092 5.136828 TCTGTAACTTTGAAGCCAATCCAA 58.863 37.500 0.00 0.00 31.46 3.53
1660 4101 3.511146 TGAAGCCAATCCAATCAAACTCC 59.489 43.478 0.00 0.00 0.00 3.85
1740 4182 3.334769 TGGATAACCCAGACCTCCC 57.665 57.895 0.00 0.00 40.82 4.30
1754 4678 0.323178 CCTCCCCATCATGCTATGCC 60.323 60.000 0.00 0.00 0.00 4.40
1812 4739 1.464997 GTCATCGAGTGCCAAAGGTTC 59.535 52.381 0.00 0.00 0.00 3.62
1835 4823 0.814010 GCAAGACACGACCACACCTT 60.814 55.000 0.00 0.00 0.00 3.50
1838 4826 2.203153 ACACGACCACACCTTGCC 60.203 61.111 0.00 0.00 0.00 4.52
1841 4829 2.280524 CGACCACACCTTGCCGAA 60.281 61.111 0.00 0.00 0.00 4.30
1842 4830 1.890041 CGACCACACCTTGCCGAAA 60.890 57.895 0.00 0.00 0.00 3.46
1843 4831 1.652563 GACCACACCTTGCCGAAAC 59.347 57.895 0.00 0.00 0.00 2.78
1849 4837 3.194062 CACACCTTGCCGAAACAAAATT 58.806 40.909 0.00 0.00 0.00 1.82
1851 4839 4.208253 CACACCTTGCCGAAACAAAATTAC 59.792 41.667 0.00 0.00 0.00 1.89
1910 4898 5.582665 GCCATTTAAACTGGTTGAACAAACA 59.417 36.000 14.31 5.19 40.86 2.83
1911 4899 6.092807 GCCATTTAAACTGGTTGAACAAACAA 59.907 34.615 6.73 0.00 40.86 2.83
1964 4952 1.026718 GCCATAAGCCTTGCGTGTCT 61.027 55.000 0.00 0.00 34.35 3.41
1992 4980 4.632538 TGTAGTGATGACCATGTACGAG 57.367 45.455 0.00 0.00 0.00 4.18
2161 5258 4.142315 CCACATCAAATCAAAGAGGCGAAT 60.142 41.667 0.00 0.00 0.00 3.34
2216 5313 6.378564 TCCTCTTGGTCACAAAAACAACAATA 59.621 34.615 0.00 0.00 35.89 1.90
2217 5314 7.038659 CCTCTTGGTCACAAAAACAACAATAA 58.961 34.615 0.00 0.00 35.89 1.40
2224 5321 9.039870 GGTCACAAAAACAACAATAATGATGAA 57.960 29.630 0.00 0.00 33.82 2.57
2295 6136 3.059868 GCTCGAAGAACAACGTTGATGAA 60.060 43.478 33.66 11.31 34.09 2.57
2354 6195 2.541588 CGACTGTTGAGCTTGTTTTGGG 60.542 50.000 0.00 0.00 0.00 4.12
2470 6355 4.023450 CAGCCAAATAGATGCATGTACTGG 60.023 45.833 21.25 21.25 0.00 4.00
2515 6403 9.736023 CCAAAATAGGATATCTTACTTTTGTGC 57.264 33.333 22.73 2.53 32.82 4.57
2529 6417 9.900264 CTTACTTTTGTGCAAATTAGTTTTCAC 57.100 29.630 6.55 6.55 0.00 3.18
2538 6426 5.051307 GCAAATTAGTTTTCACACCCGAAAC 60.051 40.000 0.00 0.00 34.68 2.78
2555 6443 1.578583 AACTTGTTCGGGAAGACACG 58.421 50.000 0.00 0.00 45.08 4.49
2580 6474 7.535940 CGTGATCAAACTAATCGCCTTTTTAAA 59.464 33.333 0.00 0.00 31.40 1.52
2581 6475 9.353999 GTGATCAAACTAATCGCCTTTTTAAAT 57.646 29.630 0.00 0.00 0.00 1.40
2624 6519 4.202245 TGTAAACCACATGCTAGAGGAC 57.798 45.455 0.00 0.00 30.04 3.85
2627 6522 1.944177 ACCACATGCTAGAGGACAGT 58.056 50.000 0.00 0.00 0.00 3.55
2786 6683 5.376625 TCTGGGTATGGAAATAATGACTGC 58.623 41.667 0.00 0.00 0.00 4.40
2859 6756 1.106351 TGTTGCCTGCATTCAACCGT 61.106 50.000 21.18 0.00 41.21 4.83
2863 6760 2.166829 TGCCTGCATTCAACCGTAAAT 58.833 42.857 0.00 0.00 0.00 1.40
2865 6762 2.163412 GCCTGCATTCAACCGTAAATCA 59.837 45.455 0.00 0.00 0.00 2.57
2868 6765 5.036737 CCTGCATTCAACCGTAAATCATTC 58.963 41.667 0.00 0.00 0.00 2.67
2870 6768 4.142271 TGCATTCAACCGTAAATCATTCCC 60.142 41.667 0.00 0.00 0.00 3.97
2890 6788 0.387750 GCGAAGGGCTTGCTCAAAAG 60.388 55.000 0.00 0.00 39.11 2.27
2896 6794 5.564651 CGAAGGGCTTGCTCAAAAGAAATAA 60.565 40.000 0.00 0.00 0.00 1.40
2899 6797 4.925646 GGGCTTGCTCAAAAGAAATAACAG 59.074 41.667 0.00 0.00 0.00 3.16
2975 6873 7.219154 CGAGTTTCTTAGTGTGTAGCTCAATAG 59.781 40.741 0.00 0.00 0.00 1.73
2990 6894 6.219473 AGCTCAATAGTTATCATGAAGGACG 58.781 40.000 0.00 0.00 0.00 4.79
3004 6908 0.680061 AGGACGACCACTTCCTCAAC 59.320 55.000 6.71 0.00 40.09 3.18
3042 6946 0.845337 AAAGTTGTCCGGGTTGGGTA 59.155 50.000 0.00 0.00 38.76 3.69
3203 7112 6.854496 TGTTGCACTCGTATAAGAACTTTT 57.146 33.333 0.00 0.00 0.00 2.27
3329 7321 7.112528 AGTTTTGGAACGTTTTGACTTTTTC 57.887 32.000 0.46 0.00 40.75 2.29
3375 7369 3.428413 ACCAGGTGTAATTACCACCAC 57.572 47.619 25.76 14.23 43.37 4.16
3379 7373 3.434299 CAGGTGTAATTACCACCACGTTC 59.566 47.826 25.76 9.22 43.37 3.95
3392 7386 2.888414 ACCACGTTCCAAAGGGTATTTG 59.112 45.455 0.00 0.00 34.93 2.32
3393 7387 2.352323 CCACGTTCCAAAGGGTATTTGC 60.352 50.000 0.00 0.00 34.93 3.68
3461 7455 8.759481 TTCAACAAGCATATGGGTCATAATTA 57.241 30.769 4.56 0.00 29.74 1.40
3462 7456 8.394971 TCAACAAGCATATGGGTCATAATTAG 57.605 34.615 4.56 0.00 29.74 1.73
3469 7463 6.942576 GCATATGGGTCATAATTAGTCAACCT 59.057 38.462 4.56 0.00 29.74 3.50
3507 7501 7.253422 CCTGATAATTCCAAAGTTGATGTCAC 58.747 38.462 0.00 0.00 0.00 3.67
3508 7502 7.121759 CCTGATAATTCCAAAGTTGATGTCACT 59.878 37.037 0.00 0.00 0.00 3.41
3509 7503 8.044060 TGATAATTCCAAAGTTGATGTCACTC 57.956 34.615 0.00 0.00 0.00 3.51
3510 7504 7.884877 TGATAATTCCAAAGTTGATGTCACTCT 59.115 33.333 0.00 0.00 0.00 3.24
3511 7505 9.383519 GATAATTCCAAAGTTGATGTCACTCTA 57.616 33.333 0.00 0.00 0.00 2.43
3512 7506 7.678947 AATTCCAAAGTTGATGTCACTCTAG 57.321 36.000 0.00 0.00 0.00 2.43
3513 7507 5.152623 TCCAAAGTTGATGTCACTCTAGG 57.847 43.478 0.00 0.00 0.00 3.02
3514 7508 4.020218 TCCAAAGTTGATGTCACTCTAGGG 60.020 45.833 0.00 0.00 0.00 3.53
3515 7509 4.020218 CCAAAGTTGATGTCACTCTAGGGA 60.020 45.833 0.00 0.00 0.00 4.20
3516 7510 5.338708 CCAAAGTTGATGTCACTCTAGGGAT 60.339 44.000 0.00 0.00 0.00 3.85
3517 7511 5.350504 AAGTTGATGTCACTCTAGGGATG 57.649 43.478 0.00 0.00 0.00 3.51
3518 7512 4.614475 AGTTGATGTCACTCTAGGGATGA 58.386 43.478 0.00 0.00 0.00 2.92
3519 7513 5.026121 AGTTGATGTCACTCTAGGGATGAA 58.974 41.667 0.00 0.00 0.00 2.57
3520 7514 5.485353 AGTTGATGTCACTCTAGGGATGAAA 59.515 40.000 0.00 0.00 0.00 2.69
3521 7515 6.013379 AGTTGATGTCACTCTAGGGATGAAAA 60.013 38.462 0.00 0.00 0.00 2.29
3522 7516 5.734720 TGATGTCACTCTAGGGATGAAAAC 58.265 41.667 0.00 0.00 0.00 2.43
3523 7517 4.188247 TGTCACTCTAGGGATGAAAACG 57.812 45.455 0.00 0.00 0.00 3.60
3524 7518 3.056107 TGTCACTCTAGGGATGAAAACGG 60.056 47.826 0.00 0.00 0.00 4.44
3525 7519 3.194968 GTCACTCTAGGGATGAAAACGGA 59.805 47.826 0.00 0.00 0.00 4.69
3526 7520 3.447586 TCACTCTAGGGATGAAAACGGAG 59.552 47.826 0.00 0.00 0.00 4.63
3528 7522 3.195825 ACTCTAGGGATGAAAACGGAGTG 59.804 47.826 0.00 0.00 45.00 3.51
3529 7523 2.500098 TCTAGGGATGAAAACGGAGTGG 59.500 50.000 0.00 0.00 45.00 4.00
3530 7524 1.358152 AGGGATGAAAACGGAGTGGA 58.642 50.000 0.00 0.00 45.00 4.02
3531 7525 1.702957 AGGGATGAAAACGGAGTGGAA 59.297 47.619 0.00 0.00 45.00 3.53
3532 7526 2.107552 AGGGATGAAAACGGAGTGGAAA 59.892 45.455 0.00 0.00 45.00 3.13
3533 7527 2.228103 GGGATGAAAACGGAGTGGAAAC 59.772 50.000 0.00 0.00 45.00 2.78
3534 7528 3.146847 GGATGAAAACGGAGTGGAAACT 58.853 45.455 0.00 0.00 45.00 2.66
3535 7529 3.568430 GGATGAAAACGGAGTGGAAACTT 59.432 43.478 0.00 0.00 45.00 2.66
3536 7530 4.758165 GGATGAAAACGGAGTGGAAACTTA 59.242 41.667 0.00 0.00 45.00 2.24
3544 7538 3.560896 CGGAGTGGAAACTTAAAACGGAA 59.439 43.478 0.00 0.00 0.00 4.30
3569 7563 6.284459 AGGAAATACGGAAATTTGCAAAACA 58.716 32.000 17.19 0.00 39.03 2.83
3570 7564 6.763610 AGGAAATACGGAAATTTGCAAAACAA 59.236 30.769 17.19 0.00 39.03 2.83
3630 7627 2.629639 ACGGAATGATGTTTTTCGGC 57.370 45.000 0.00 0.00 0.00 5.54
3696 7694 9.660544 ATGGAATTTCTAATTTTACTATGGGCT 57.339 29.630 0.00 0.00 0.00 5.19
3698 7696 9.967346 GGAATTTCTAATTTTACTATGGGCTTC 57.033 33.333 0.00 0.00 0.00 3.86
3705 7703 1.879575 TACTATGGGCTTCTGGCTGT 58.120 50.000 0.00 0.00 41.46 4.40
3731 7729 6.656632 TGTAGCCCAATAATCAAACAACAA 57.343 33.333 0.00 0.00 0.00 2.83
3756 7754 6.931838 ACAATGACAAAATGAGCAGAATGAT 58.068 32.000 0.00 0.00 39.69 2.45
3767 7774 1.530293 GCAGAATGATCGATGTGAGGC 59.470 52.381 0.54 0.00 39.69 4.70
3779 7786 0.320374 TGTGAGGCCCAACTTCTACG 59.680 55.000 0.00 0.00 0.00 3.51
3784 7791 0.252197 GGCCCAACTTCTACGACCAT 59.748 55.000 0.00 0.00 0.00 3.55
3785 7792 1.369625 GCCCAACTTCTACGACCATG 58.630 55.000 0.00 0.00 0.00 3.66
3789 7796 1.732259 CAACTTCTACGACCATGCACC 59.268 52.381 0.00 0.00 0.00 5.01
3809 7818 3.265479 ACCTACTCAACTAGACCCTACGT 59.735 47.826 0.00 0.00 0.00 3.57
3818 7827 4.603131 ACTAGACCCTACGTAATTGTCCA 58.397 43.478 12.57 2.46 0.00 4.02
3826 7835 6.127619 ACCCTACGTAATTGTCCAGTACTAAC 60.128 42.308 0.00 0.00 0.00 2.34
3836 7847 9.649167 AATTGTCCAGTACTAACACAATACTAC 57.351 33.333 19.20 0.00 36.82 2.73
3844 7857 8.394121 AGTACTAACACAATACTACGCTAAGTC 58.606 37.037 0.00 0.00 0.00 3.01
3851 7864 2.840296 ACTACGCTAAGTCGCTAACC 57.160 50.000 0.00 0.00 0.00 2.85
3859 7872 4.383052 CGCTAAGTCGCTAACCTAATCATG 59.617 45.833 0.00 0.00 0.00 3.07
3907 7922 9.535878 TTAACTAAAATTGTTAGTTTGCTTGGG 57.464 29.630 15.45 0.00 41.04 4.12
3908 7923 7.119709 ACTAAAATTGTTAGTTTGCTTGGGT 57.880 32.000 0.00 0.00 31.68 4.51
3912 7929 8.794335 AAAATTGTTAGTTTGCTTGGGTTTTA 57.206 26.923 0.00 0.00 0.00 1.52
3919 7936 6.530019 AGTTTGCTTGGGTTTTATCTATGG 57.470 37.500 0.00 0.00 0.00 2.74
3921 7938 6.152831 AGTTTGCTTGGGTTTTATCTATGGTC 59.847 38.462 0.00 0.00 0.00 4.02
3928 7945 4.167307 GGGTTTTATCTATGGTCCAAGGGA 59.833 45.833 0.00 0.00 0.00 4.20
3936 7953 5.812286 TCTATGGTCCAAGGGAGTTTTAAC 58.188 41.667 0.00 0.00 29.39 2.01
3952 7969 0.250553 TAACTTCCGGCCAACACCTG 60.251 55.000 2.24 0.00 0.00 4.00
3957 7974 2.644992 CGGCCAACACCTGCTTTC 59.355 61.111 2.24 0.00 0.00 2.62
3974 7991 0.179129 TTCGTTTCCGTATCCGCTCC 60.179 55.000 0.00 0.00 35.01 4.70
3976 7993 2.105528 TTTCCGTATCCGCTCCGC 59.894 61.111 0.00 0.00 0.00 5.54
3988 8016 2.019951 GCTCCGCGTTCGTTTCTGA 61.020 57.895 4.92 0.00 0.00 3.27
4032 8062 6.373216 TCATTCCGGATTTCTGTATTCGTTTT 59.627 34.615 4.15 0.00 0.00 2.43
4034 8064 5.239351 TCCGGATTTCTGTATTCGTTTTCA 58.761 37.500 0.00 0.00 0.00 2.69
4089 8122 0.877213 CCAGTTCCGTCCGTTTTCGT 60.877 55.000 0.00 0.00 42.35 3.85
4261 8296 2.596851 GGCCCTCTCTGCCTTCACA 61.597 63.158 0.00 0.00 45.70 3.58
4530 8725 1.067516 ACAGCATTGCCACTGAACAAC 59.932 47.619 4.70 0.00 37.35 3.32
5070 9290 3.505386 CCTATACTCCTCCATGCTCACT 58.495 50.000 0.00 0.00 0.00 3.41
5094 9314 0.249868 CCGTGCTCTTGTTCTCCACA 60.250 55.000 0.00 0.00 0.00 4.17
5582 9894 2.106683 GGAAGAACGTCATGCCGGG 61.107 63.158 2.18 0.00 0.00 5.73
5639 9975 2.522836 AGTGCTCTTGCCGATATCAG 57.477 50.000 3.12 0.00 38.71 2.90
5671 10007 4.977963 AGTGAAAATCATTTGTGAACAGCG 59.022 37.500 0.00 0.00 0.00 5.18
5674 10010 4.789012 AAATCATTTGTGAACAGCGGAT 57.211 36.364 0.00 0.00 0.00 4.18
5755 12377 2.223203 GCGTCTGCGTTAGTTAGCTCTA 60.223 50.000 0.00 0.00 40.81 2.43
5756 12378 3.352652 CGTCTGCGTTAGTTAGCTCTAC 58.647 50.000 0.00 0.00 0.00 2.59
5757 12379 3.063725 CGTCTGCGTTAGTTAGCTCTACT 59.936 47.826 6.64 6.64 0.00 2.57
5781 12403 4.738124 ACTCATCGTGTTGTATCAGAGTG 58.262 43.478 0.00 0.00 34.17 3.51
5824 12446 2.051334 CTCACTTTTGGTGGGTGTGA 57.949 50.000 0.00 0.00 45.38 3.58
5852 12474 1.342819 GCTCTCGTCCTATGCTTGGAT 59.657 52.381 0.00 0.00 35.87 3.41
5876 12498 1.215647 GAGTAGGGCGTGGTCAGTG 59.784 63.158 0.00 0.00 0.00 3.66
5904 12526 3.328382 AGCGTGCCTAAGAAACATACA 57.672 42.857 0.00 0.00 0.00 2.29
5908 12530 4.083484 GCGTGCCTAAGAAACATACAAGTT 60.083 41.667 0.00 0.00 0.00 2.66
5909 12531 5.562113 GCGTGCCTAAGAAACATACAAGTTT 60.562 40.000 0.00 0.00 43.90 2.66
5911 12533 6.915843 CGTGCCTAAGAAACATACAAGTTTTT 59.084 34.615 0.00 0.00 41.48 1.94
5931 12553 3.732048 TTTTAAGGAGGCTTACCCCTG 57.268 47.619 0.00 0.00 36.89 4.45
5932 12554 1.591768 TTAAGGAGGCTTACCCCTGG 58.408 55.000 0.00 0.00 36.89 4.45
5933 12555 0.986550 TAAGGAGGCTTACCCCTGGC 60.987 60.000 0.00 0.00 36.89 4.85
5934 12556 3.810188 GGAGGCTTACCCCTGGCC 61.810 72.222 0.00 0.00 45.57 5.36
5937 12559 2.692741 GGCTTACCCCTGGCCTCT 60.693 66.667 3.32 0.00 42.31 3.69
5938 12560 2.592308 GCTTACCCCTGGCCTCTG 59.408 66.667 3.32 0.00 0.00 3.35
5939 12561 2.592308 CTTACCCCTGGCCTCTGC 59.408 66.667 3.32 0.00 0.00 4.26
5940 12562 2.204074 TTACCCCTGGCCTCTGCA 60.204 61.111 3.32 0.00 40.13 4.41
5941 12563 1.850289 TTACCCCTGGCCTCTGCAA 60.850 57.895 3.32 0.00 40.13 4.08
5942 12564 2.137177 TTACCCCTGGCCTCTGCAAC 62.137 60.000 3.32 0.00 40.13 4.17
5944 12566 4.020617 CCCTGGCCTCTGCAACGA 62.021 66.667 3.32 0.00 40.13 3.85
5945 12567 2.270205 CCTGGCCTCTGCAACGAT 59.730 61.111 3.32 0.00 40.13 3.73
5946 12568 2.110967 CCTGGCCTCTGCAACGATG 61.111 63.158 3.32 0.00 40.13 3.84
5958 12580 2.930230 CAACGATGCATACGGTCATC 57.070 50.000 18.34 0.00 36.60 2.92
5959 12581 2.473816 CAACGATGCATACGGTCATCT 58.526 47.619 18.34 0.00 37.52 2.90
5960 12582 2.866156 CAACGATGCATACGGTCATCTT 59.134 45.455 18.34 4.57 37.52 2.40
5961 12583 4.048504 CAACGATGCATACGGTCATCTTA 58.951 43.478 18.34 0.00 37.52 2.10
5962 12584 4.521130 ACGATGCATACGGTCATCTTAT 57.479 40.909 18.34 0.00 37.52 1.73
5963 12585 4.883083 ACGATGCATACGGTCATCTTATT 58.117 39.130 18.34 0.00 37.52 1.40
5964 12586 6.020971 ACGATGCATACGGTCATCTTATTA 57.979 37.500 18.34 0.00 37.52 0.98
5965 12587 6.452242 ACGATGCATACGGTCATCTTATTAA 58.548 36.000 18.34 0.00 37.52 1.40
5966 12588 6.926826 ACGATGCATACGGTCATCTTATTAAA 59.073 34.615 18.34 0.00 37.52 1.52
5967 12589 7.439955 ACGATGCATACGGTCATCTTATTAAAA 59.560 33.333 18.34 0.00 37.52 1.52
5968 12590 8.279800 CGATGCATACGGTCATCTTATTAAAAA 58.720 33.333 0.00 0.00 37.52 1.94
5969 12591 9.599322 GATGCATACGGTCATCTTATTAAAAAG 57.401 33.333 0.00 0.00 36.91 2.27
5970 12592 8.500753 TGCATACGGTCATCTTATTAAAAAGT 57.499 30.769 0.00 0.00 0.00 2.66
5971 12593 8.394877 TGCATACGGTCATCTTATTAAAAAGTG 58.605 33.333 0.00 0.00 0.00 3.16
5972 12594 8.395633 GCATACGGTCATCTTATTAAAAAGTGT 58.604 33.333 0.00 0.00 0.00 3.55
5996 12654 3.650139 AGAAACTACTAACCACAGTGCG 58.350 45.455 0.00 0.00 0.00 5.34
5997 12655 3.069158 AGAAACTACTAACCACAGTGCGT 59.931 43.478 0.00 0.00 0.00 5.24
6032 12783 9.730420 AAAAACATACATAGAAAATATCGGTGC 57.270 29.630 0.00 0.00 0.00 5.01
6044 12795 5.819825 AATATCGGTGCTTTCCTCTTTTC 57.180 39.130 0.00 0.00 0.00 2.29
6050 12801 3.304726 GGTGCTTTCCTCTTTTCTTTCGG 60.305 47.826 0.00 0.00 0.00 4.30
6055 12806 6.072673 TGCTTTCCTCTTTTCTTTCGGTAATC 60.073 38.462 0.00 0.00 0.00 1.75
6056 12807 6.072673 GCTTTCCTCTTTTCTTTCGGTAATCA 60.073 38.462 0.00 0.00 0.00 2.57
6062 12813 6.173339 TCTTTTCTTTCGGTAATCATGCTCT 58.827 36.000 0.00 0.00 0.00 4.09
6065 12816 9.261180 CTTTTCTTTCGGTAATCATGCTCTATA 57.739 33.333 0.00 0.00 0.00 1.31
6066 12817 8.589335 TTTCTTTCGGTAATCATGCTCTATAC 57.411 34.615 0.00 0.00 0.00 1.47
6083 12834 5.064558 TCTATACTTCTTAGGGCAGTCTCG 58.935 45.833 0.00 0.00 0.00 4.04
6094 12845 2.097791 GGGCAGTCTCGTTGAGTAGTAG 59.902 54.545 0.00 0.00 0.00 2.57
6114 12865 1.548269 GGGCATTTTGGAAACCGATGA 59.452 47.619 0.00 0.00 0.00 2.92
6124 12875 2.879026 GGAAACCGATGAAGGCCTTATC 59.121 50.000 20.54 18.86 33.69 1.75
6343 13095 9.740710 AATACATATACTAAAAAGCCCCAGATC 57.259 33.333 0.00 0.00 0.00 2.75
6350 13102 5.710567 ACTAAAAAGCCCCAGATCTGTTTAC 59.289 40.000 21.11 7.90 0.00 2.01
6366 13118 5.983720 TCTGTTTACTTTGTGTAGCTCTCAC 59.016 40.000 13.02 13.02 36.48 3.51
6380 13132 5.449107 AGCTCTCACTTTAACGTACTTCA 57.551 39.130 0.00 0.00 0.00 3.02
6502 13256 5.046376 CCAATTTAAGGCCTCCATGAAACTT 60.046 40.000 5.23 0.00 0.00 2.66
6504 13258 2.683211 AAGGCCTCCATGAAACTTGT 57.317 45.000 5.23 0.00 0.00 3.16
6508 13262 2.489722 GGCCTCCATGAAACTTGTTCTC 59.510 50.000 0.00 0.00 0.00 2.87
6514 13268 6.239402 CCTCCATGAAACTTGTTCTCCATTTT 60.239 38.462 0.00 0.00 0.00 1.82
6515 13269 6.748132 TCCATGAAACTTGTTCTCCATTTTC 58.252 36.000 0.00 0.00 0.00 2.29
6516 13270 5.630680 CCATGAAACTTGTTCTCCATTTTCG 59.369 40.000 0.00 0.00 32.13 3.46
6517 13271 4.606961 TGAAACTTGTTCTCCATTTTCGC 58.393 39.130 0.00 0.00 32.13 4.70
6518 13272 4.097135 TGAAACTTGTTCTCCATTTTCGCA 59.903 37.500 0.00 0.00 32.13 5.10
6522 13276 5.600696 ACTTGTTCTCCATTTTCGCATTTT 58.399 33.333 0.00 0.00 0.00 1.82
6523 13277 6.048509 ACTTGTTCTCCATTTTCGCATTTTT 58.951 32.000 0.00 0.00 0.00 1.94
6545 13299 5.764487 TGAGTCTCAGTGCACTATATCTG 57.236 43.478 21.20 7.15 0.00 2.90
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
14 15 1.671054 TGAACTAGGGCGTGCTTGC 60.671 57.895 0.00 0.00 0.00 4.01
18 19 1.741770 CAGGTGAACTAGGGCGTGC 60.742 63.158 0.00 0.00 0.00 5.34
22 23 1.379642 GCATGCAGGTGAACTAGGGC 61.380 60.000 14.21 0.00 0.00 5.19
212 216 0.252197 GTGGGGCGGAAGAACAGTAT 59.748 55.000 0.00 0.00 0.00 2.12
404 2005 2.465055 CTTCCCTTGTGTCCCGTCCC 62.465 65.000 0.00 0.00 0.00 4.46
405 2006 1.003718 CTTCCCTTGTGTCCCGTCC 60.004 63.158 0.00 0.00 0.00 4.79
406 2007 1.003718 CCTTCCCTTGTGTCCCGTC 60.004 63.158 0.00 0.00 0.00 4.79
407 2008 1.460689 TCCTTCCCTTGTGTCCCGT 60.461 57.895 0.00 0.00 0.00 5.28
408 2009 1.003718 GTCCTTCCCTTGTGTCCCG 60.004 63.158 0.00 0.00 0.00 5.14
419 2020 2.047179 GTGCTGTCCCGTCCTTCC 60.047 66.667 0.00 0.00 0.00 3.46
470 2081 4.460683 TCCCATGGTACGCACGGC 62.461 66.667 11.73 0.00 0.00 5.68
513 2124 1.188863 TGCTGAGCTGCTGACAGATA 58.811 50.000 19.16 6.98 44.20 1.98
578 2193 3.648009 GATCGCCTCTGATAAGAACCAG 58.352 50.000 0.00 0.00 0.00 4.00
647 2287 1.517694 GCACATTCTGCCAATGCCG 60.518 57.895 5.58 0.05 40.42 5.69
658 2298 4.147322 CCACGTCGGCGCACATTC 62.147 66.667 10.50 0.00 42.83 2.67
682 2322 3.864686 GCGCCGCTATGTGGTGTG 61.865 66.667 0.00 0.00 44.50 3.82
761 2404 1.626654 AACAAATCGTGCCTCGCTCG 61.627 55.000 1.92 1.92 45.04 5.03
762 2405 0.095417 GAACAAATCGTGCCTCGCTC 59.905 55.000 0.00 0.00 39.67 5.03
772 2415 2.351738 GCCACCTTTCTGGAACAAATCG 60.352 50.000 0.00 0.00 38.70 3.34
808 2455 0.102300 CATCGCCGTCACATCAGGTA 59.898 55.000 0.00 0.00 0.00 3.08
1056 2734 3.430862 GCGAGCGTCATTTGGCCA 61.431 61.111 0.00 0.00 0.00 5.36
1172 2909 2.172679 TGATTGTTCATGCATGCACCT 58.827 42.857 25.37 13.00 0.00 4.00
1256 2996 5.047235 AGAGAAAAATAGCCACACTCGTACT 60.047 40.000 0.00 0.00 0.00 2.73
1272 3012 1.388547 ACAAGCACGGCAGAGAAAAA 58.611 45.000 0.00 0.00 0.00 1.94
1311 3051 5.803470 GCTTAGAAACAACACATAGGGGTCT 60.803 44.000 0.00 0.00 0.00 3.85
1317 3057 4.201724 GCTCGGCTTAGAAACAACACATAG 60.202 45.833 0.00 0.00 0.00 2.23
1318 3058 3.682858 GCTCGGCTTAGAAACAACACATA 59.317 43.478 0.00 0.00 0.00 2.29
1319 3059 2.484264 GCTCGGCTTAGAAACAACACAT 59.516 45.455 0.00 0.00 0.00 3.21
1515 3921 9.543231 TCTCTTCTCTTTGATAACCTAAACCTA 57.457 33.333 0.00 0.00 0.00 3.08
1517 3923 8.532819 TCTCTCTTCTCTTTGATAACCTAAACC 58.467 37.037 0.00 0.00 0.00 3.27
1518 3924 9.581099 CTCTCTCTTCTCTTTGATAACCTAAAC 57.419 37.037 0.00 0.00 0.00 2.01
1519 3925 9.315363 ACTCTCTCTTCTCTTTGATAACCTAAA 57.685 33.333 0.00 0.00 0.00 1.85
1521 3927 8.887264 AACTCTCTCTTCTCTTTGATAACCTA 57.113 34.615 0.00 0.00 0.00 3.08
1523 3929 8.840833 AAAACTCTCTCTTCTCTTTGATAACC 57.159 34.615 0.00 0.00 0.00 2.85
1546 3961 2.517959 ACTGCCTGCATGCTTCTAAAA 58.482 42.857 20.33 0.00 0.00 1.52
1553 3968 1.942657 CGTATTTACTGCCTGCATGCT 59.057 47.619 20.33 0.00 0.00 3.79
1578 3994 7.769507 CCTGCTAGTAGTATAAGACATCCGATA 59.230 40.741 7.10 0.00 0.00 2.92
1641 4082 3.094572 CAGGAGTTTGATTGGATTGGCT 58.905 45.455 0.00 0.00 0.00 4.75
1713 4155 4.530553 GGTCTGGGTTATCCATTTTTGGTT 59.469 41.667 0.00 0.00 46.01 3.67
1716 4158 4.402474 GGAGGTCTGGGTTATCCATTTTTG 59.598 45.833 0.00 0.00 46.01 2.44
1732 4174 1.983691 CATAGCATGATGGGGAGGTCT 59.016 52.381 0.00 0.00 0.00 3.85
1740 4182 2.816087 GGTTGTAGGCATAGCATGATGG 59.184 50.000 0.00 0.00 0.00 3.51
1812 4739 0.809636 TGTGGTCGTGTCTTGCTGTG 60.810 55.000 0.00 0.00 0.00 3.66
1835 4823 7.675962 ACTATGTAGTAATTTTGTTTCGGCA 57.324 32.000 0.00 0.00 34.13 5.69
1842 4830 9.733556 TGTGGATGAACTATGTAGTAATTTTGT 57.266 29.630 0.00 0.00 34.99 2.83
1851 4839 8.093307 AGCAGATTATGTGGATGAACTATGTAG 58.907 37.037 0.00 0.00 0.00 2.74
1892 4880 5.578727 GCACATTGTTTGTTCAACCAGTTTA 59.421 36.000 0.00 0.00 36.00 2.01
1910 4898 1.599419 GCTTGAAAACGGTCGCACATT 60.599 47.619 0.00 0.00 0.00 2.71
1911 4899 0.040425 GCTTGAAAACGGTCGCACAT 60.040 50.000 0.00 0.00 0.00 3.21
1964 4952 6.048732 ACATGGTCATCACTACAACATGTA 57.951 37.500 0.00 0.00 43.73 2.29
2161 5258 8.715190 ATTCATCATTATTCCCATCATGTTCA 57.285 30.769 0.00 0.00 0.00 3.18
2216 5313 7.476810 CCTAAAGAGGGGATGGTATTCATCATT 60.477 40.741 8.05 0.00 43.90 2.57
2217 5314 6.012157 CCTAAAGAGGGGATGGTATTCATCAT 60.012 42.308 8.05 0.00 43.90 2.45
2295 6136 3.890147 GTCATATGGAGGACGACTTACCT 59.110 47.826 2.13 0.00 39.41 3.08
2334 6175 2.687935 TCCCAAAACAAGCTCAACAGTC 59.312 45.455 0.00 0.00 0.00 3.51
2354 6195 7.225734 GGAATGGAAAGTAGCTGAAGACTATTC 59.774 40.741 0.00 4.76 0.00 1.75
2470 6355 1.407575 GGTAAGGCCAAAGAGGAGAGC 60.408 57.143 5.01 0.00 41.22 4.09
2515 6403 6.270064 AGTTTCGGGTGTGAAAACTAATTTG 58.730 36.000 0.00 0.00 39.40 2.32
2522 6410 3.497297 ACAAGTTTCGGGTGTGAAAAC 57.503 42.857 0.00 0.00 39.40 2.43
2538 6426 0.859232 CACGTGTCTTCCCGAACAAG 59.141 55.000 7.58 0.00 0.00 3.16
2546 6434 5.220228 CGATTAGTTTGATCACGTGTCTTCC 60.220 44.000 16.51 2.28 0.00 3.46
2547 6435 5.721510 GCGATTAGTTTGATCACGTGTCTTC 60.722 44.000 16.51 11.59 0.00 2.87
2555 6443 8.736751 TTTAAAAAGGCGATTAGTTTGATCAC 57.263 30.769 0.00 0.00 0.00 3.06
2615 6510 3.005897 TGAAAGTGTGACTGTCCTCTAGC 59.994 47.826 5.17 1.12 31.31 3.42
2624 6519 6.738832 ATCTGATTGATGAAAGTGTGACTG 57.261 37.500 0.00 0.00 33.43 3.51
2770 6667 6.604171 TGGTGATAGCAGTCATTATTTCCAT 58.396 36.000 0.00 0.00 0.00 3.41
2786 6683 4.080015 TGGGGTTAAGGTCAATGGTGATAG 60.080 45.833 0.00 0.00 35.80 2.08
2870 6768 2.128853 TTTTGAGCAAGCCCTTCGCG 62.129 55.000 0.00 0.00 44.76 5.87
2896 6794 6.709018 AAGGCATACAACAAAGTAAACTGT 57.291 33.333 0.00 0.00 0.00 3.55
2899 6797 7.995463 TGAAAAGGCATACAACAAAGTAAAC 57.005 32.000 0.00 0.00 0.00 2.01
2975 6873 4.124851 AGTGGTCGTCCTTCATGATAAC 57.875 45.455 0.00 0.00 34.23 1.89
2990 6894 4.437390 CGCAATATTGTTGAGGAAGTGGTC 60.437 45.833 16.61 0.00 0.00 4.02
3004 6908 7.862372 ACAACTTTATGCCTATTCGCAATATTG 59.138 33.333 11.27 11.27 43.24 1.90
3077 6981 0.693049 ACCCGAGAGCCAAACATTCT 59.307 50.000 0.00 0.00 0.00 2.40
3149 7057 8.392612 TCTACTTTGTTCGTAAAAAGTTTCAGG 58.607 33.333 14.57 3.16 42.51 3.86
3162 7070 7.041372 AGTGCAACAATAATCTACTTTGTTCGT 60.041 33.333 0.00 0.00 40.56 3.85
3203 7112 6.533012 TGACAAAAATGACAAATTTCTTCGCA 59.467 30.769 0.00 0.00 0.00 5.10
3271 7263 0.028770 TTGAGCTGTCGTTTTTGGCG 59.971 50.000 0.00 0.00 0.00 5.69
3276 7268 4.165779 CAACAAAGTTGAGCTGTCGTTTT 58.834 39.130 3.91 0.00 0.00 2.43
3375 7369 1.889829 TGGCAAATACCCTTTGGAACG 59.110 47.619 0.00 0.00 34.81 3.95
3379 7373 6.127083 ACAAATAGATGGCAAATACCCTTTGG 60.127 38.462 0.00 0.00 37.80 3.28
3392 7386 3.214696 AGGTAGGCACAAATAGATGGC 57.785 47.619 0.00 0.00 41.52 4.40
3393 7387 5.760253 CACTAAGGTAGGCACAAATAGATGG 59.240 44.000 0.00 0.00 0.00 3.51
3461 7455 2.945668 GCTTCTGTTGTTCAGGTTGACT 59.054 45.455 0.00 0.00 43.76 3.41
3462 7456 2.033424 GGCTTCTGTTGTTCAGGTTGAC 59.967 50.000 0.00 0.00 43.76 3.18
3469 7463 5.415701 GGAATTATCAGGCTTCTGTTGTTCA 59.584 40.000 0.00 0.00 39.45 3.18
3507 7501 3.430929 CCACTCCGTTTTCATCCCTAGAG 60.431 52.174 0.00 0.00 0.00 2.43
3508 7502 2.500098 CCACTCCGTTTTCATCCCTAGA 59.500 50.000 0.00 0.00 0.00 2.43
3509 7503 2.500098 TCCACTCCGTTTTCATCCCTAG 59.500 50.000 0.00 0.00 0.00 3.02
3510 7504 2.542550 TCCACTCCGTTTTCATCCCTA 58.457 47.619 0.00 0.00 0.00 3.53
3511 7505 1.358152 TCCACTCCGTTTTCATCCCT 58.642 50.000 0.00 0.00 0.00 4.20
3512 7506 2.194201 TTCCACTCCGTTTTCATCCC 57.806 50.000 0.00 0.00 0.00 3.85
3513 7507 3.146847 AGTTTCCACTCCGTTTTCATCC 58.853 45.455 0.00 0.00 0.00 3.51
3514 7508 4.830826 AAGTTTCCACTCCGTTTTCATC 57.169 40.909 0.00 0.00 30.45 2.92
3515 7509 6.702716 TTTAAGTTTCCACTCCGTTTTCAT 57.297 33.333 0.00 0.00 30.45 2.57
3516 7510 6.324042 GTTTTAAGTTTCCACTCCGTTTTCA 58.676 36.000 0.00 0.00 30.45 2.69
3517 7511 5.453266 CGTTTTAAGTTTCCACTCCGTTTTC 59.547 40.000 0.00 0.00 30.45 2.29
3518 7512 5.334319 CGTTTTAAGTTTCCACTCCGTTTT 58.666 37.500 0.00 0.00 30.45 2.43
3519 7513 4.201940 CCGTTTTAAGTTTCCACTCCGTTT 60.202 41.667 0.00 0.00 30.45 3.60
3520 7514 3.313249 CCGTTTTAAGTTTCCACTCCGTT 59.687 43.478 0.00 0.00 30.45 4.44
3521 7515 2.874086 CCGTTTTAAGTTTCCACTCCGT 59.126 45.455 0.00 0.00 30.45 4.69
3522 7516 3.132925 TCCGTTTTAAGTTTCCACTCCG 58.867 45.455 0.00 0.00 30.45 4.63
3523 7517 5.503662 TTTCCGTTTTAAGTTTCCACTCC 57.496 39.130 0.00 0.00 30.45 3.85
3524 7518 5.297527 TCCTTTCCGTTTTAAGTTTCCACTC 59.702 40.000 0.00 0.00 30.45 3.51
3525 7519 5.195185 TCCTTTCCGTTTTAAGTTTCCACT 58.805 37.500 0.00 0.00 33.11 4.00
3526 7520 5.503662 TCCTTTCCGTTTTAAGTTTCCAC 57.496 39.130 0.00 0.00 0.00 4.02
3527 7521 6.527057 TTTCCTTTCCGTTTTAAGTTTCCA 57.473 33.333 0.00 0.00 0.00 3.53
3528 7522 7.324375 CGTATTTCCTTTCCGTTTTAAGTTTCC 59.676 37.037 0.00 0.00 0.00 3.13
3529 7523 7.324375 CCGTATTTCCTTTCCGTTTTAAGTTTC 59.676 37.037 0.00 0.00 0.00 2.78
3530 7524 7.013178 TCCGTATTTCCTTTCCGTTTTAAGTTT 59.987 33.333 0.00 0.00 0.00 2.66
3531 7525 6.486320 TCCGTATTTCCTTTCCGTTTTAAGTT 59.514 34.615 0.00 0.00 0.00 2.66
3532 7526 5.997129 TCCGTATTTCCTTTCCGTTTTAAGT 59.003 36.000 0.00 0.00 0.00 2.24
3533 7527 6.484818 TCCGTATTTCCTTTCCGTTTTAAG 57.515 37.500 0.00 0.00 0.00 1.85
3534 7528 6.874288 TTCCGTATTTCCTTTCCGTTTTAA 57.126 33.333 0.00 0.00 0.00 1.52
3535 7529 6.874288 TTTCCGTATTTCCTTTCCGTTTTA 57.126 33.333 0.00 0.00 0.00 1.52
3536 7530 5.771153 TTTCCGTATTTCCTTTCCGTTTT 57.229 34.783 0.00 0.00 0.00 2.43
3544 7538 6.763610 TGTTTTGCAAATTTCCGTATTTCCTT 59.236 30.769 13.65 0.00 0.00 3.36
3592 7589 3.359580 CCGTTTTTGTTTCCGATTAAGCG 59.640 43.478 6.05 6.05 0.00 4.68
3595 7592 6.736123 TCATTCCGTTTTTGTTTCCGATTAA 58.264 32.000 0.00 0.00 0.00 1.40
3596 7593 6.315091 TCATTCCGTTTTTGTTTCCGATTA 57.685 33.333 0.00 0.00 0.00 1.75
3599 7596 4.036971 ACATCATTCCGTTTTTGTTTCCGA 59.963 37.500 0.00 0.00 0.00 4.55
3630 7627 1.811965 TCTGTTTCCATGCATGTTCCG 59.188 47.619 24.58 9.94 0.00 4.30
3681 7679 4.646492 CAGCCAGAAGCCCATAGTAAAATT 59.354 41.667 0.00 0.00 45.47 1.82
3682 7680 4.210331 CAGCCAGAAGCCCATAGTAAAAT 58.790 43.478 0.00 0.00 45.47 1.82
3692 7690 1.541588 CTACAAAACAGCCAGAAGCCC 59.458 52.381 0.00 0.00 45.47 5.19
3705 7703 7.500992 TGTTGTTTGATTATTGGGCTACAAAA 58.499 30.769 0.00 0.00 43.46 2.44
3719 7717 9.557338 CATTTTGTCATTGTTTGTTGTTTGATT 57.443 25.926 0.00 0.00 0.00 2.57
3731 7729 6.751157 TCATTCTGCTCATTTTGTCATTGTT 58.249 32.000 0.00 0.00 0.00 2.83
3741 7739 5.121105 TCACATCGATCATTCTGCTCATTT 58.879 37.500 0.00 0.00 0.00 2.32
3756 7754 0.036388 GAAGTTGGGCCTCACATCGA 60.036 55.000 4.53 0.00 0.00 3.59
3761 7759 0.606604 TCGTAGAAGTTGGGCCTCAC 59.393 55.000 4.53 1.02 0.00 3.51
3767 7774 1.338674 TGCATGGTCGTAGAAGTTGGG 60.339 52.381 0.00 0.00 39.69 4.12
3779 7786 2.770164 AGTTGAGTAGGTGCATGGTC 57.230 50.000 0.00 0.00 0.00 4.02
3784 7791 2.176889 GGGTCTAGTTGAGTAGGTGCA 58.823 52.381 0.00 0.00 0.00 4.57
3785 7792 2.458620 AGGGTCTAGTTGAGTAGGTGC 58.541 52.381 0.00 0.00 0.00 5.01
3789 7796 7.066766 ACAATTACGTAGGGTCTAGTTGAGTAG 59.933 40.741 0.00 0.00 0.00 2.57
3818 7827 8.273780 ACTTAGCGTAGTATTGTGTTAGTACT 57.726 34.615 0.00 0.00 36.07 2.73
3826 7835 3.692576 AGCGACTTAGCGTAGTATTGTG 58.307 45.455 0.00 0.00 43.00 3.33
3836 7847 3.961182 TGATTAGGTTAGCGACTTAGCG 58.039 45.455 0.00 0.00 43.00 4.26
3844 7857 9.864034 CTACAAAATAACATGATTAGGTTAGCG 57.136 33.333 0.00 0.00 36.61 4.26
3883 7898 7.561251 ACCCAAGCAAACTAACAATTTTAGTT 58.439 30.769 14.66 14.66 44.45 2.24
3885 7900 8.432110 AAACCCAAGCAAACTAACAATTTTAG 57.568 30.769 0.00 6.10 0.00 1.85
3896 7911 6.016555 ACCATAGATAAAACCCAAGCAAACT 58.983 36.000 0.00 0.00 0.00 2.66
3901 7916 4.532834 TGGACCATAGATAAAACCCAAGC 58.467 43.478 0.00 0.00 0.00 4.01
3902 7917 5.594317 CCTTGGACCATAGATAAAACCCAAG 59.406 44.000 0.00 0.00 45.29 3.61
3904 7919 4.079443 CCCTTGGACCATAGATAAAACCCA 60.079 45.833 0.00 0.00 0.00 4.51
3905 7920 4.167307 TCCCTTGGACCATAGATAAAACCC 59.833 45.833 0.00 0.00 0.00 4.11
3907 7922 6.002653 ACTCCCTTGGACCATAGATAAAAC 57.997 41.667 0.00 0.00 0.00 2.43
3908 7923 6.652205 AACTCCCTTGGACCATAGATAAAA 57.348 37.500 0.00 0.00 0.00 1.52
3912 7929 6.217693 AGTTAAAACTCCCTTGGACCATAGAT 59.782 38.462 0.00 0.00 32.86 1.98
3919 7936 3.501062 CGGAAGTTAAAACTCCCTTGGAC 59.499 47.826 0.00 0.00 38.57 4.02
3921 7938 2.817844 CCGGAAGTTAAAACTCCCTTGG 59.182 50.000 0.00 0.00 38.57 3.61
3928 7945 2.359848 GTGTTGGCCGGAAGTTAAAACT 59.640 45.455 5.05 0.00 42.04 2.66
3936 7953 3.365265 GCAGGTGTTGGCCGGAAG 61.365 66.667 5.05 0.00 0.00 3.46
3943 7960 1.269051 GGAAACGAAAGCAGGTGTTGG 60.269 52.381 0.00 0.00 0.00 3.77
3974 7991 5.624081 ACATATACTATCAGAAACGAACGCG 59.376 40.000 3.53 3.53 44.79 6.01
3976 7993 9.831054 GAAAACATATACTATCAGAAACGAACG 57.169 33.333 0.00 0.00 0.00 3.95
4013 8043 6.165659 AGTGAAAACGAATACAGAAATCCG 57.834 37.500 0.00 0.00 0.00 4.18
4089 8122 4.019681 AGTGACATAGGGATGAAAACGGAA 60.020 41.667 0.00 0.00 36.48 4.30
4261 8296 2.622977 GCCGGAGAGATAGAGGATGGAT 60.623 54.545 5.05 0.00 0.00 3.41
4511 8691 1.338973 AGTTGTTCAGTGGCAATGCTG 59.661 47.619 10.58 3.48 0.00 4.41
4512 8692 1.696063 AGTTGTTCAGTGGCAATGCT 58.304 45.000 10.58 0.00 0.00 3.79
4530 8725 1.656652 CCTACGATGGCACCAAGAAG 58.343 55.000 0.00 0.00 0.00 2.85
4758 8978 4.421479 AGGCTGTTCGGCGTCTCG 62.421 66.667 6.85 0.00 44.22 4.04
4839 9059 2.050714 GTGAACTCGGCGTCGACA 60.051 61.111 8.66 1.58 40.88 4.35
5052 9272 2.045524 CCAGTGAGCATGGAGGAGTAT 58.954 52.381 0.00 0.00 40.51 2.12
5070 9290 4.927782 AACAAGAGCACGGCGCCA 62.928 61.111 28.98 0.00 44.04 5.69
5094 9314 1.086696 CGGTGGCGATTGAAATGAGT 58.913 50.000 0.00 0.00 0.00 3.41
5582 9894 2.887568 CGTCCTCGAGTGGCATGC 60.888 66.667 9.90 9.90 39.71 4.06
5612 9933 0.179034 GGCAAGAGCACTATCCCCAG 60.179 60.000 0.00 0.00 44.61 4.45
5639 9975 7.181143 ACAAATGATTTTCACTTGTGAATGC 57.819 32.000 15.67 9.44 43.96 3.56
5654 9990 6.992123 TCTATATCCGCTGTTCACAAATGATT 59.008 34.615 0.00 0.00 33.85 2.57
5671 10007 4.142160 TGTGAGCCACGCATATCTATATCC 60.142 45.833 1.66 0.00 37.14 2.59
5674 10010 3.367395 GCTGTGAGCCACGCATATCTATA 60.367 47.826 13.04 0.00 38.38 1.31
5755 12377 6.151312 ACTCTGATACAACACGATGAGTTAGT 59.849 38.462 0.00 0.00 30.54 2.24
5756 12378 6.470556 CACTCTGATACAACACGATGAGTTAG 59.529 42.308 0.00 0.00 32.13 2.34
5757 12379 6.322491 CACTCTGATACAACACGATGAGTTA 58.678 40.000 0.00 0.00 32.13 2.24
5796 12418 1.723542 CAAAAGTGAGCGCGTGCAG 60.724 57.895 24.79 0.00 46.23 4.41
5798 12420 2.427410 CCAAAAGTGAGCGCGTGC 60.427 61.111 14.39 14.39 43.24 5.34
5799 12421 3.022287 ACCAAAAGTGAGCGCGTG 58.978 55.556 8.43 0.00 0.00 5.34
5852 12474 2.412323 CCACGCCCTACTCACGCTA 61.412 63.158 0.00 0.00 0.00 4.26
5856 12478 1.215647 CTGACCACGCCCTACTCAC 59.784 63.158 0.00 0.00 0.00 3.51
5860 12482 0.250166 AAACACTGACCACGCCCTAC 60.250 55.000 0.00 0.00 0.00 3.18
5876 12498 2.968675 TCTTAGGCACGCTAGGAAAAC 58.031 47.619 0.00 0.00 0.00 2.43
5911 12533 2.310647 CCAGGGGTAAGCCTCCTTAAAA 59.689 50.000 0.00 0.00 35.21 1.52
5912 12534 1.920351 CCAGGGGTAAGCCTCCTTAAA 59.080 52.381 0.00 0.00 35.21 1.52
5913 12535 1.591768 CCAGGGGTAAGCCTCCTTAA 58.408 55.000 0.00 0.00 35.21 1.85
5914 12536 0.986550 GCCAGGGGTAAGCCTCCTTA 60.987 60.000 0.00 0.00 35.21 2.69
5915 12537 2.309504 GCCAGGGGTAAGCCTCCTT 61.310 63.158 0.00 0.00 35.21 3.36
5916 12538 2.692741 GCCAGGGGTAAGCCTCCT 60.693 66.667 0.00 0.00 35.21 3.69
5917 12539 3.810188 GGCCAGGGGTAAGCCTCC 61.810 72.222 0.00 0.00 43.62 4.30
5921 12543 2.592308 CAGAGGCCAGGGGTAAGC 59.408 66.667 5.01 0.00 0.00 3.09
5922 12544 1.852157 TTGCAGAGGCCAGGGGTAAG 61.852 60.000 5.01 0.00 40.13 2.34
5923 12545 1.850289 TTGCAGAGGCCAGGGGTAA 60.850 57.895 5.01 0.00 40.13 2.85
5924 12546 2.204074 TTGCAGAGGCCAGGGGTA 60.204 61.111 5.01 0.00 40.13 3.69
5925 12547 3.971702 GTTGCAGAGGCCAGGGGT 61.972 66.667 5.01 0.00 40.13 4.95
5927 12549 3.335356 ATCGTTGCAGAGGCCAGGG 62.335 63.158 5.01 0.00 40.13 4.45
5928 12550 2.110967 CATCGTTGCAGAGGCCAGG 61.111 63.158 5.01 0.00 40.13 4.45
5929 12551 3.494378 CATCGTTGCAGAGGCCAG 58.506 61.111 5.01 0.00 40.13 4.85
5939 12561 2.473816 AGATGACCGTATGCATCGTTG 58.526 47.619 0.19 0.00 44.23 4.10
5940 12562 2.890808 AGATGACCGTATGCATCGTT 57.109 45.000 0.19 0.00 44.23 3.85
5941 12563 2.890808 AAGATGACCGTATGCATCGT 57.109 45.000 0.19 0.00 44.23 3.73
5942 12564 6.944557 TTAATAAGATGACCGTATGCATCG 57.055 37.500 0.19 7.03 44.23 3.84
5943 12565 9.599322 CTTTTTAATAAGATGACCGTATGCATC 57.401 33.333 0.19 0.00 40.85 3.91
5944 12566 9.120538 ACTTTTTAATAAGATGACCGTATGCAT 57.879 29.630 11.97 3.79 0.00 3.96
5945 12567 8.394877 CACTTTTTAATAAGATGACCGTATGCA 58.605 33.333 11.97 0.00 0.00 3.96
5946 12568 8.395633 ACACTTTTTAATAAGATGACCGTATGC 58.604 33.333 11.97 0.00 0.00 3.14
5966 12588 9.924650 CTGTGGTTAGTAGTTTCTATACACTTT 57.075 33.333 0.00 0.00 32.89 2.66
5967 12589 9.086758 ACTGTGGTTAGTAGTTTCTATACACTT 57.913 33.333 0.00 0.00 32.89 3.16
5968 12590 8.521176 CACTGTGGTTAGTAGTTTCTATACACT 58.479 37.037 0.00 0.00 32.89 3.55
5969 12591 7.275123 GCACTGTGGTTAGTAGTTTCTATACAC 59.725 40.741 10.21 0.00 32.61 2.90
5970 12592 7.318141 GCACTGTGGTTAGTAGTTTCTATACA 58.682 38.462 10.21 0.00 0.00 2.29
5971 12593 6.471519 CGCACTGTGGTTAGTAGTTTCTATAC 59.528 42.308 10.21 0.00 0.00 1.47
5972 12594 6.151648 ACGCACTGTGGTTAGTAGTTTCTATA 59.848 38.462 10.21 0.00 0.00 1.31
5973 12595 5.047519 ACGCACTGTGGTTAGTAGTTTCTAT 60.048 40.000 10.21 0.00 0.00 1.98
5974 12596 4.279169 ACGCACTGTGGTTAGTAGTTTCTA 59.721 41.667 10.21 0.00 0.00 2.10
5975 12597 3.069158 ACGCACTGTGGTTAGTAGTTTCT 59.931 43.478 10.21 0.00 0.00 2.52
5976 12598 3.387397 ACGCACTGTGGTTAGTAGTTTC 58.613 45.455 10.21 0.00 0.00 2.78
5977 12599 3.464111 ACGCACTGTGGTTAGTAGTTT 57.536 42.857 10.21 0.00 0.00 2.66
5978 12600 3.464111 AACGCACTGTGGTTAGTAGTT 57.536 42.857 10.21 0.00 0.00 2.24
5979 12601 4.796038 ATAACGCACTGTGGTTAGTAGT 57.204 40.909 19.33 7.24 32.64 2.73
5980 12602 5.228635 CGTAATAACGCACTGTGGTTAGTAG 59.771 44.000 19.69 13.91 43.12 2.57
5981 12603 5.094812 CGTAATAACGCACTGTGGTTAGTA 58.905 41.667 19.33 18.31 43.12 1.82
5982 12604 3.922240 CGTAATAACGCACTGTGGTTAGT 59.078 43.478 19.33 18.99 43.12 2.24
5983 12605 4.494597 CGTAATAACGCACTGTGGTTAG 57.505 45.455 19.33 8.60 43.12 2.34
6027 12778 3.607078 CGAAAGAAAAGAGGAAAGCACCG 60.607 47.826 0.00 0.00 34.73 4.94
6032 12783 7.435068 TGATTACCGAAAGAAAAGAGGAAAG 57.565 36.000 0.00 0.00 0.00 2.62
6044 12795 8.085296 AGAAGTATAGAGCATGATTACCGAAAG 58.915 37.037 0.00 0.00 0.00 2.62
6050 12801 7.762159 GCCCTAAGAAGTATAGAGCATGATTAC 59.238 40.741 0.00 0.00 0.00 1.89
6055 12806 5.011533 ACTGCCCTAAGAAGTATAGAGCATG 59.988 44.000 0.00 0.00 34.25 4.06
6056 12807 5.151454 ACTGCCCTAAGAAGTATAGAGCAT 58.849 41.667 0.00 0.00 34.25 3.79
6062 12813 4.789807 ACGAGACTGCCCTAAGAAGTATA 58.210 43.478 0.00 0.00 0.00 1.47
6065 12816 1.926108 ACGAGACTGCCCTAAGAAGT 58.074 50.000 0.00 0.00 0.00 3.01
6066 12817 2.231478 TCAACGAGACTGCCCTAAGAAG 59.769 50.000 0.00 0.00 0.00 2.85
6083 12834 4.585879 TCCAAAATGCCCTACTACTCAAC 58.414 43.478 0.00 0.00 0.00 3.18
6094 12845 1.548269 TCATCGGTTTCCAAAATGCCC 59.452 47.619 0.00 0.00 0.00 5.36
6199 12951 5.567534 CCTGAAATTTTACACGCATACACAC 59.432 40.000 0.00 0.00 0.00 3.82
6318 13070 9.117223 AGATCTGGGGCTTTTTAGTATATGTAT 57.883 33.333 0.00 0.00 0.00 2.29
6335 13087 4.398319 ACACAAAGTAAACAGATCTGGGG 58.602 43.478 26.08 9.59 34.19 4.96
6339 13091 6.998802 AGAGCTACACAAAGTAAACAGATCT 58.001 36.000 0.00 0.00 30.92 2.75
6343 13095 5.986135 AGTGAGAGCTACACAAAGTAAACAG 59.014 40.000 20.50 0.00 40.25 3.16
6350 13102 5.462398 ACGTTAAAGTGAGAGCTACACAAAG 59.538 40.000 20.50 12.88 40.25 2.77
6466 13220 8.671384 AGGCCTTAAATTGGAAACTTTTAAAC 57.329 30.769 0.00 0.00 32.30 2.01
6469 13223 6.555360 TGGAGGCCTTAAATTGGAAACTTTTA 59.445 34.615 6.77 0.00 0.00 1.52
6471 13225 4.904853 TGGAGGCCTTAAATTGGAAACTTT 59.095 37.500 6.77 0.00 0.00 2.66
6472 13226 4.488770 TGGAGGCCTTAAATTGGAAACTT 58.511 39.130 6.77 0.00 0.00 2.66
6473 13227 4.126520 TGGAGGCCTTAAATTGGAAACT 57.873 40.909 6.77 0.00 0.00 2.66
6474 13228 4.466015 TCATGGAGGCCTTAAATTGGAAAC 59.534 41.667 6.77 0.00 0.00 2.78
6475 13229 4.682563 TCATGGAGGCCTTAAATTGGAAA 58.317 39.130 6.77 0.00 0.00 3.13
6478 13232 4.467438 AGTTTCATGGAGGCCTTAAATTGG 59.533 41.667 6.77 0.00 0.00 3.16
6482 13236 4.479158 ACAAGTTTCATGGAGGCCTTAAA 58.521 39.130 6.77 0.17 0.00 1.52
6502 13256 5.595885 TCAAAAATGCGAAAATGGAGAACA 58.404 33.333 0.00 0.00 0.00 3.18
6504 13258 5.841810 ACTCAAAAATGCGAAAATGGAGAA 58.158 33.333 0.00 0.00 0.00 2.87
6508 13262 5.221880 TGAGACTCAAAAATGCGAAAATGG 58.778 37.500 1.64 0.00 0.00 3.16
6514 13268 2.224079 GCACTGAGACTCAAAAATGCGA 59.776 45.455 6.61 0.00 0.00 5.10
6515 13269 2.031769 TGCACTGAGACTCAAAAATGCG 60.032 45.455 18.40 5.51 34.56 4.73
6516 13270 3.004106 AGTGCACTGAGACTCAAAAATGC 59.996 43.478 20.97 17.49 0.00 3.56
6517 13271 4.825546 AGTGCACTGAGACTCAAAAATG 57.174 40.909 20.97 4.27 0.00 2.32
6518 13272 8.263640 AGATATAGTGCACTGAGACTCAAAAAT 58.736 33.333 29.57 12.15 0.00 1.82
6522 13276 5.888161 TCAGATATAGTGCACTGAGACTCAA 59.112 40.000 29.57 6.90 35.01 3.02
6523 13277 5.440610 TCAGATATAGTGCACTGAGACTCA 58.559 41.667 29.57 7.73 35.01 3.41
6545 13299 9.632807 CTATTTACTGTCACCAGATATAGCTTC 57.367 37.037 0.00 0.00 41.50 3.86
6592 13346 1.879380 TCCAAAATGCCGTTCTCACTG 59.121 47.619 0.00 0.00 0.00 3.66
6593 13347 2.154462 CTCCAAAATGCCGTTCTCACT 58.846 47.619 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.