Multiple sequence alignment - TraesCS5A01G226500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G226500 chr5A 100.000 5597 0 0 1 5597 442295342 442289746 0.000000e+00 10336.0
1 TraesCS5A01G226500 chr5A 84.190 1050 143 17 2997 4037 442506033 442504998 0.000000e+00 998.0
2 TraesCS5A01G226500 chr5A 83.969 1048 147 16 2997 4037 442681555 442680522 0.000000e+00 985.0
3 TraesCS5A01G226500 chr5A 91.034 435 39 0 4121 4555 442505002 442504568 6.250000e-164 588.0
4 TraesCS5A01G226500 chr5A 89.881 168 12 3 984 1151 442509190 442509028 1.580000e-50 211.0
5 TraesCS5A01G226500 chr5A 93.798 129 8 0 1023 1151 442682348 442682220 1.590000e-45 195.0
6 TraesCS5A01G226500 chr5A 98.182 55 1 0 5042 5096 442290243 442290189 4.620000e-16 97.1
7 TraesCS5A01G226500 chr5A 98.182 55 1 0 5100 5154 442290301 442290247 4.620000e-16 97.1
8 TraesCS5A01G226500 chr5A 100.000 34 0 0 2561 2594 7183755 7183788 4.680000e-06 63.9
9 TraesCS5A01G226500 chr5A 100.000 32 0 0 2902 2933 442292393 442292362 6.060000e-05 60.2
10 TraesCS5A01G226500 chr5A 100.000 32 0 0 2950 2981 442292441 442292410 6.060000e-05 60.2
11 TraesCS5A01G226500 chr5A 100.000 30 0 0 2561 2590 709762406 709762377 7.830000e-04 56.5
12 TraesCS5A01G226500 chr5D 93.618 2225 66 27 2561 4737 341077287 341075091 0.000000e+00 3253.0
13 TraesCS5A01G226500 chr5D 84.739 1055 129 22 2997 4037 341242716 341241680 0.000000e+00 1027.0
14 TraesCS5A01G226500 chr5D 84.206 1051 152 12 2997 4037 556722632 556721586 0.000000e+00 1009.0
15 TraesCS5A01G226500 chr5D 84.351 1048 143 13 2997 4037 341532337 341531304 0.000000e+00 1007.0
16 TraesCS5A01G226500 chr5D 86.982 676 44 17 4433 5096 341058664 341058021 0.000000e+00 721.0
17 TraesCS5A01G226500 chr5D 90.805 435 40 0 4121 4555 341241684 341241250 2.910000e-162 582.0
18 TraesCS5A01G226500 chr5D 90.293 443 32 3 1425 1856 341078398 341077956 2.260000e-158 569.0
19 TraesCS5A01G226500 chr5D 92.191 397 20 5 4336 4732 341051173 341050788 8.200000e-153 551.0
20 TraesCS5A01G226500 chr5D 91.184 397 35 0 4121 4517 556721590 556721194 1.770000e-149 540.0
21 TraesCS5A01G226500 chr5D 92.126 381 20 7 2187 2564 341077709 341077336 3.840000e-146 529.0
22 TraesCS5A01G226500 chr5D 87.719 456 47 3 4121 4567 341531308 341530853 1.790000e-144 523.0
23 TraesCS5A01G226500 chr5D 84.429 578 39 26 871 1430 341078965 341078421 6.430000e-144 521.0
24 TraesCS5A01G226500 chr5D 88.669 353 25 9 4756 5096 341050509 341050160 3.120000e-112 416.0
25 TraesCS5A01G226500 chr5D 93.596 203 13 0 5395 5597 341039970 341039768 2.530000e-78 303.0
26 TraesCS5A01G226500 chr5D 82.436 353 42 3 5105 5438 341058070 341057719 1.970000e-74 291.0
27 TraesCS5A01G226500 chr5D 89.189 222 19 3 102 321 341081573 341081355 7.140000e-69 272.0
28 TraesCS5A01G226500 chr5D 81.677 322 55 4 2997 3316 560107693 560107374 1.200000e-66 265.0
29 TraesCS5A01G226500 chr5D 89.881 168 12 3 984 1151 341245975 341245813 1.580000e-50 211.0
30 TraesCS5A01G226500 chr5D 94.488 127 7 0 1025 1151 341533083 341532957 4.420000e-46 196.0
31 TraesCS5A01G226500 chr5D 91.729 133 11 0 5267 5399 341048872 341048740 9.580000e-43 185.0
32 TraesCS5A01G226500 chr5D 92.000 125 10 0 1026 1150 556723196 556723072 5.760000e-40 176.0
33 TraesCS5A01G226500 chr5D 91.429 105 7 2 5494 5597 341057719 341057616 5.840000e-30 143.0
34 TraesCS5A01G226500 chr5D 86.747 83 8 2 702 781 341079203 341079121 7.720000e-14 89.8
35 TraesCS5A01G226500 chr5B 94.712 1494 52 14 2561 4037 400564691 400563208 0.000000e+00 2296.0
36 TraesCS5A01G226500 chr5B 84.256 1048 143 15 2997 4037 400999082 400998050 0.000000e+00 1002.0
37 TraesCS5A01G226500 chr5B 82.131 1192 86 73 815 1939 400566420 400565289 0.000000e+00 904.0
38 TraesCS5A01G226500 chr5B 95.273 550 6 6 4121 4670 400563212 400562683 0.000000e+00 854.0
39 TraesCS5A01G226500 chr5B 90.575 435 41 0 4121 4555 400777703 400778137 1.350000e-160 577.0
40 TraesCS5A01G226500 chr5B 88.260 477 34 13 2089 2562 400565199 400564742 8.200000e-153 551.0
41 TraesCS5A01G226500 chr5B 87.281 456 49 3 4121 4567 400998054 400997599 3.870000e-141 512.0
42 TraesCS5A01G226500 chr5B 87.395 238 20 5 450 687 400599075 400598848 1.200000e-66 265.0
43 TraesCS5A01G226500 chr5B 86.364 242 20 2 98 339 400599549 400599321 9.310000e-63 252.0
44 TraesCS5A01G226500 chr5B 89.091 165 13 3 984 1148 400773224 400773383 3.420000e-47 200.0
45 TraesCS5A01G226500 chr5B 93.798 129 8 0 1023 1151 400999803 400999675 1.590000e-45 195.0
46 TraesCS5A01G226500 chr4A 89.857 631 64 0 3407 4037 605086472 605085842 0.000000e+00 811.0
47 TraesCS5A01G226500 chr4A 90.680 397 37 0 4121 4517 605085846 605085450 3.840000e-146 529.0
48 TraesCS5A01G226500 chr4A 84.830 323 43 6 2997 3316 605086905 605086586 2.520000e-83 320.0
49 TraesCS5A01G226500 chr4B 74.926 339 76 9 2989 3323 504940168 504940501 4.520000e-31 147.0
50 TraesCS5A01G226500 chr4D 74.419 344 69 15 2989 3323 405771740 405772073 4.550000e-26 130.0
51 TraesCS5A01G226500 chr4D 87.059 85 8 3 17 100 17254094 17254176 5.970000e-15 93.5
52 TraesCS5A01G226500 chr2A 94.805 77 4 0 7 83 13796519 13796443 2.740000e-23 121.0
53 TraesCS5A01G226500 chr2A 100.000 29 0 0 2561 2589 24058773 24058745 3.000000e-03 54.7
54 TraesCS5A01G226500 chr3A 94.595 37 1 1 2555 2590 669737753 669737717 7.830000e-04 56.5
55 TraesCS5A01G226500 chr2B 100.000 30 0 0 2561 2590 785224622 785224593 7.830000e-04 56.5
56 TraesCS5A01G226500 chr7B 100.000 29 0 0 2561 2589 49192114 49192142 3.000000e-03 54.7
57 TraesCS5A01G226500 chr6A 100.000 29 0 0 2561 2589 53076331 53076303 3.000000e-03 54.7


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G226500 chr5A 442289746 442295342 5596 True 10336.000000 10336 100.000000 1 5597 1 chr5A.!!$R1 5596
1 TraesCS5A01G226500 chr5A 442504568 442509190 4622 True 599.000000 998 88.368333 984 4555 3 chr5A.!!$R4 3571
2 TraesCS5A01G226500 chr5A 442680522 442682348 1826 True 590.000000 985 88.883500 1023 4037 2 chr5A.!!$R5 3014
3 TraesCS5A01G226500 chr5D 341075091 341081573 6482 True 872.300000 3253 89.400333 102 4737 6 chr5D.!!$R5 4635
4 TraesCS5A01G226500 chr5D 341241250 341245975 4725 True 606.666667 1027 88.475000 984 4555 3 chr5D.!!$R6 3571
5 TraesCS5A01G226500 chr5D 341530853 341533083 2230 True 575.333333 1007 88.852667 1025 4567 3 chr5D.!!$R7 3542
6 TraesCS5A01G226500 chr5D 556721194 556723196 2002 True 575.000000 1009 89.130000 1026 4517 3 chr5D.!!$R8 3491
7 TraesCS5A01G226500 chr5D 341057616 341058664 1048 True 385.000000 721 86.949000 4433 5597 3 chr5D.!!$R4 1164
8 TraesCS5A01G226500 chr5D 341048740 341051173 2433 True 384.000000 551 90.863000 4336 5399 3 chr5D.!!$R3 1063
9 TraesCS5A01G226500 chr5B 400562683 400566420 3737 True 1151.250000 2296 90.094000 815 4670 4 chr5B.!!$R1 3855
10 TraesCS5A01G226500 chr5B 400997599 400999803 2204 True 569.666667 1002 88.445000 1023 4567 3 chr5B.!!$R3 3544
11 TraesCS5A01G226500 chr5B 400598848 400599549 701 True 258.500000 265 86.879500 98 687 2 chr5B.!!$R2 589
12 TraesCS5A01G226500 chr4A 605085450 605086905 1455 True 553.333333 811 88.455667 2997 4517 3 chr4A.!!$R1 1520

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
541 2254 0.164432 CGATCGCCGCTGTATACGTA 59.836 55.000 0.26 0.0 0.00 3.57 F
549 2262 0.318445 GCTGTATACGTACCGCCAGG 60.318 60.000 0.00 0.0 45.13 4.45 F
792 2602 0.530744 CACAGCATCAGCATGGCTTT 59.469 50.000 0.00 0.0 45.49 3.51 F
1182 3084 0.613777 CCCACACTCACCCTAACCTC 59.386 60.000 0.00 0.0 0.00 3.85 F
2041 4054 0.172578 TTACACGATGAGACTGGCGG 59.827 55.000 0.00 0.0 0.00 6.13 F
2050 4063 0.179062 GAGACTGGCGGCTCATGATT 60.179 55.000 11.43 0.0 0.00 2.57 F
2051 4064 0.254178 AGACTGGCGGCTCATGATTT 59.746 50.000 11.43 0.0 0.00 2.17 F
2110 4123 1.001487 CTTGTGCAGCCGAATTTCACA 60.001 47.619 0.00 0.0 36.07 3.58 F
4050 9113 1.070758 GCCAGGTTGAGACTTGAGACA 59.929 52.381 0.00 0.0 35.02 3.41 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1532 3530 0.107214 CAAGAAATCCGGCAGCCCTA 60.107 55.000 5.63 0.0 0.00 3.53 R
1570 3571 0.732880 AAGATGAGCCGTCGTGTTCG 60.733 55.000 0.00 0.0 38.55 3.95 R
2028 4041 0.879400 CATGAGCCGCCAGTCTCATC 60.879 60.000 2.11 0.0 45.35 2.92 R
2965 7508 0.969149 TCGGCAGATTCAGACACAGT 59.031 50.000 0.00 0.0 0.00 3.55 R
3707 8770 1.207089 TCCGACATGTCCATGAACTCC 59.793 52.381 20.03 0.0 41.20 3.85 R
3945 9008 1.415659 GATGGAGATGAGGGTGGACAG 59.584 57.143 0.00 0.0 0.00 3.51 R
4050 9113 4.862018 GCAGTTTGTATGTGTGTTGTGTTT 59.138 37.500 0.00 0.0 0.00 2.83 R
4081 9144 2.076100 GGCGTGAGACATGAATTGTGA 58.924 47.619 0.00 0.0 39.18 3.58 R
5144 10492 0.038159 GACTGGTCTGGTTCCTGTCG 60.038 60.000 6.31 0.0 41.45 4.35 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
86 87 7.830217 TTTTGATGACAAGTAATTTCGAACG 57.170 32.000 0.00 0.00 37.32 3.95
87 88 6.772770 TTGATGACAAGTAATTTCGAACGA 57.227 33.333 0.00 0.00 0.00 3.85
88 89 6.772770 TGATGACAAGTAATTTCGAACGAA 57.227 33.333 0.00 5.53 0.00 3.85
89 90 6.817396 TGATGACAAGTAATTTCGAACGAAG 58.183 36.000 9.46 0.23 35.38 3.79
90 91 6.643360 TGATGACAAGTAATTTCGAACGAAGA 59.357 34.615 9.46 2.86 35.38 2.87
91 92 6.448053 TGACAAGTAATTTCGAACGAAGAG 57.552 37.500 9.46 0.00 35.38 2.85
92 93 6.210796 TGACAAGTAATTTCGAACGAAGAGA 58.789 36.000 9.46 0.00 35.38 3.10
93 94 6.362551 TGACAAGTAATTTCGAACGAAGAGAG 59.637 38.462 9.46 1.94 35.38 3.20
94 95 6.214399 ACAAGTAATTTCGAACGAAGAGAGT 58.786 36.000 9.46 0.00 35.38 3.24
95 96 7.365741 ACAAGTAATTTCGAACGAAGAGAGTA 58.634 34.615 9.46 0.00 35.38 2.59
96 97 7.537991 ACAAGTAATTTCGAACGAAGAGAGTAG 59.462 37.037 9.46 3.51 35.38 2.57
103 104 8.445193 TTTCGAACGAAGAGAGTAGTATTTTC 57.555 34.615 9.46 0.00 35.38 2.29
129 130 1.408702 AGCTTTGTCCATGTTTTGCGT 59.591 42.857 0.00 0.00 0.00 5.24
131 132 1.522258 CTTTGTCCATGTTTTGCGTGC 59.478 47.619 0.00 0.00 32.85 5.34
159 161 2.125106 GGCACCCGTCCTCATCAC 60.125 66.667 0.00 0.00 0.00 3.06
161 163 1.448540 GCACCCGTCCTCATCACAG 60.449 63.158 0.00 0.00 0.00 3.66
182 184 3.060602 GAGTAAGTAATCCATCAGCGCC 58.939 50.000 2.29 0.00 0.00 6.53
260 262 2.176546 CAACGGAAGGTGCATGCG 59.823 61.111 14.09 0.00 44.78 4.73
344 1808 2.349755 GCACTACGGGCAAGGGAA 59.650 61.111 0.00 0.00 0.00 3.97
345 1809 1.077716 GCACTACGGGCAAGGGAAT 60.078 57.895 0.00 0.00 0.00 3.01
346 1810 0.679960 GCACTACGGGCAAGGGAATT 60.680 55.000 0.00 0.00 0.00 2.17
347 1811 1.834188 CACTACGGGCAAGGGAATTT 58.166 50.000 0.00 0.00 0.00 1.82
348 1812 2.167662 CACTACGGGCAAGGGAATTTT 58.832 47.619 0.00 0.00 0.00 1.82
349 1813 2.560981 CACTACGGGCAAGGGAATTTTT 59.439 45.455 0.00 0.00 0.00 1.94
402 1906 0.546122 TGAGTTGTGACCTGCCACTT 59.454 50.000 0.00 0.00 37.89 3.16
404 1908 2.171659 TGAGTTGTGACCTGCCACTTTA 59.828 45.455 0.00 0.00 37.89 1.85
405 1909 3.211045 GAGTTGTGACCTGCCACTTTAA 58.789 45.455 0.00 0.00 37.89 1.52
406 1910 3.821033 GAGTTGTGACCTGCCACTTTAAT 59.179 43.478 0.00 0.00 37.89 1.40
407 1911 4.980573 AGTTGTGACCTGCCACTTTAATA 58.019 39.130 0.00 0.00 37.89 0.98
408 1912 5.003804 AGTTGTGACCTGCCACTTTAATAG 58.996 41.667 0.00 0.00 37.89 1.73
409 1913 3.950397 TGTGACCTGCCACTTTAATAGG 58.050 45.455 0.00 0.00 37.89 2.57
411 1915 4.532916 TGTGACCTGCCACTTTAATAGGTA 59.467 41.667 0.00 0.00 41.58 3.08
414 2102 5.190925 TGACCTGCCACTTTAATAGGTACAT 59.809 40.000 0.00 0.00 41.58 2.29
423 2111 7.307160 CCACTTTAATAGGTACATGTATGCACG 60.307 40.741 9.18 0.00 0.00 5.34
428 2116 0.304705 GTACATGTATGCACGGCAGC 59.695 55.000 9.18 0.00 43.65 5.25
429 2117 0.813610 TACATGTATGCACGGCAGCC 60.814 55.000 0.00 0.00 43.65 4.85
457 2154 2.277247 GCGCACACACACACACAC 60.277 61.111 0.30 0.00 0.00 3.82
475 2172 3.603365 GGATTTGACCGGGGCAAG 58.397 61.111 16.18 0.00 0.00 4.01
536 2249 2.049985 GCTCGATCGCCGCTGTAT 60.050 61.111 11.09 0.00 38.37 2.29
537 2250 1.209383 GCTCGATCGCCGCTGTATA 59.791 57.895 11.09 0.00 38.37 1.47
538 2251 1.066114 GCTCGATCGCCGCTGTATAC 61.066 60.000 11.09 0.00 38.37 1.47
539 2252 0.789753 CTCGATCGCCGCTGTATACG 60.790 60.000 11.09 0.00 38.37 3.06
540 2253 1.082300 CGATCGCCGCTGTATACGT 60.082 57.895 0.26 0.00 0.00 3.57
541 2254 0.164432 CGATCGCCGCTGTATACGTA 59.836 55.000 0.26 0.00 0.00 3.57
542 2255 1.599992 GATCGCCGCTGTATACGTAC 58.400 55.000 0.00 0.00 0.00 3.67
544 2257 1.723542 CGCCGCTGTATACGTACCG 60.724 63.158 0.00 0.00 0.00 4.02
545 2258 2.012948 GCCGCTGTATACGTACCGC 61.013 63.158 0.00 0.00 37.59 5.68
546 2259 1.370900 CCGCTGTATACGTACCGCC 60.371 63.158 0.00 0.00 37.65 6.13
547 2260 1.356270 CGCTGTATACGTACCGCCA 59.644 57.895 0.00 0.00 37.65 5.69
548 2261 0.659417 CGCTGTATACGTACCGCCAG 60.659 60.000 0.00 2.96 37.65 4.85
549 2262 0.318445 GCTGTATACGTACCGCCAGG 60.318 60.000 0.00 0.00 45.13 4.45
583 2296 3.365969 CCAGCCAACCGTGAATTTAGAAC 60.366 47.826 0.00 0.00 0.00 3.01
599 2312 7.755582 ATTTAGAACCGATTTAATTTGCTGC 57.244 32.000 0.00 0.00 0.00 5.25
603 2316 5.295787 AGAACCGATTTAATTTGCTGCGATA 59.704 36.000 0.00 0.00 0.00 2.92
618 2331 4.375272 CTGCGATATCACTCCAAGTCAAT 58.625 43.478 3.12 0.00 0.00 2.57
626 2339 4.401022 TCACTCCAAGTCAATCAATTGCT 58.599 39.130 0.00 0.00 37.68 3.91
627 2340 5.559770 TCACTCCAAGTCAATCAATTGCTA 58.440 37.500 0.00 0.00 37.68 3.49
628 2341 5.412594 TCACTCCAAGTCAATCAATTGCTAC 59.587 40.000 0.00 0.00 37.68 3.58
629 2342 4.393062 ACTCCAAGTCAATCAATTGCTACG 59.607 41.667 0.00 0.00 37.68 3.51
630 2343 4.574892 TCCAAGTCAATCAATTGCTACGA 58.425 39.130 0.00 0.00 37.68 3.43
631 2344 4.631377 TCCAAGTCAATCAATTGCTACGAG 59.369 41.667 0.00 0.00 37.68 4.18
640 2362 7.378728 TCAATCAATTGCTACGAGTATCTTACG 59.621 37.037 0.00 0.00 37.68 3.18
641 2363 6.367686 TCAATTGCTACGAGTATCTTACGA 57.632 37.500 0.00 0.00 0.00 3.43
645 2367 8.540492 CAATTGCTACGAGTATCTTACGAATTT 58.460 33.333 0.00 0.00 0.00 1.82
653 2375 6.143438 CGAGTATCTTACGAATTTATGCGGTT 59.857 38.462 0.00 0.00 0.00 4.44
667 2389 4.105553 GGTTGGAGCCCCGGGTAC 62.106 72.222 21.85 11.65 34.29 3.34
668 2390 3.007323 GTTGGAGCCCCGGGTACT 61.007 66.667 21.85 17.03 34.29 2.73
669 2391 1.686800 GTTGGAGCCCCGGGTACTA 60.687 63.158 21.85 5.19 34.29 1.82
679 2401 3.581770 GCCCCGGGTACTAGATTTTATCT 59.418 47.826 21.85 0.00 43.33 1.98
687 2409 3.314693 ACTAGATTTTATCTGGGCCGGA 58.685 45.455 19.29 19.29 41.64 5.14
688 2410 3.714798 ACTAGATTTTATCTGGGCCGGAA 59.285 43.478 21.02 2.42 41.64 4.30
689 2411 3.884037 AGATTTTATCTGGGCCGGAAT 57.116 42.857 21.02 8.19 38.44 3.01
694 2416 2.099652 TATCTGGGCCGGAATGAGCG 62.100 60.000 21.02 0.00 0.00 5.03
695 2417 4.473520 CTGGGCCGGAATGAGCGT 62.474 66.667 6.48 0.00 0.00 5.07
698 2420 4.778143 GGCCGGAATGAGCGTGGT 62.778 66.667 5.05 0.00 0.00 4.16
699 2421 2.746277 GCCGGAATGAGCGTGGTT 60.746 61.111 5.05 0.00 0.00 3.67
700 2422 2.750888 GCCGGAATGAGCGTGGTTC 61.751 63.158 5.05 0.00 0.00 3.62
701 2423 2.452813 CCGGAATGAGCGTGGTTCG 61.453 63.158 0.00 0.00 43.12 3.95
703 2425 2.750888 GGAATGAGCGTGGTTCGGC 61.751 63.158 0.00 0.00 40.26 5.54
704 2426 2.746277 AATGAGCGTGGTTCGGCC 60.746 61.111 0.00 0.00 40.26 6.13
705 2427 4.778143 ATGAGCGTGGTTCGGCCC 62.778 66.667 0.00 0.00 40.26 5.80
764 2574 3.934962 GAGGGAGGGGCTCATCGC 61.935 72.222 7.29 7.29 36.98 4.58
776 2586 1.089112 CTCATCGCCTTGAATGCACA 58.911 50.000 0.00 0.00 0.00 4.57
788 2598 3.598327 TGCACAGCATCAGCATGG 58.402 55.556 0.00 0.00 45.49 3.66
791 2601 1.945354 GCACAGCATCAGCATGGCTT 61.945 55.000 0.00 0.00 45.49 4.35
792 2602 0.530744 CACAGCATCAGCATGGCTTT 59.469 50.000 0.00 0.00 45.49 3.51
793 2603 1.067142 CACAGCATCAGCATGGCTTTT 60.067 47.619 0.00 0.00 45.49 2.27
795 2605 1.067142 CAGCATCAGCATGGCTTTTGT 60.067 47.619 0.00 0.00 45.49 2.83
796 2606 1.067142 AGCATCAGCATGGCTTTTGTG 60.067 47.619 0.00 0.00 45.49 3.33
797 2607 1.355971 CATCAGCATGGCTTTTGTGC 58.644 50.000 0.00 0.00 36.40 4.57
798 2608 0.970640 ATCAGCATGGCTTTTGTGCA 59.029 45.000 0.00 0.00 41.19 4.57
800 2610 1.144969 CAGCATGGCTTTTGTGCAAG 58.855 50.000 0.00 0.00 41.19 4.01
810 2628 3.426525 GCTTTTGTGCAAGAAGAAATCGG 59.573 43.478 8.64 0.00 0.00 4.18
822 2640 1.001378 AGAAATCGGCGCCATAATTGC 60.001 47.619 28.98 20.03 0.00 3.56
837 2683 2.175184 ATTGCACACTCGCTTCGCAC 62.175 55.000 0.00 0.00 31.10 5.34
858 2704 2.043852 GGACGAGGAGAGAGGGCA 60.044 66.667 0.00 0.00 0.00 5.36
900 2776 2.747446 CCGTGGAATTCTAGTTGGTTGG 59.253 50.000 5.23 0.00 0.00 3.77
920 2796 3.056313 GCATTGCTTCTCCGTGCCC 62.056 63.158 0.16 0.00 0.00 5.36
938 2824 1.141449 CAGCGAGCTCTCCTCCTTG 59.859 63.158 12.85 0.00 37.27 3.61
946 2832 1.671901 CTCTCCTCCTTGCCTCGGTC 61.672 65.000 0.00 0.00 0.00 4.79
953 2839 1.743252 CTTGCCTCGGTCCTTGCTC 60.743 63.158 0.00 0.00 0.00 4.26
987 2873 0.709992 AGGAGAGGCAGAGGAGTTCT 59.290 55.000 0.00 0.00 36.25 3.01
988 2874 1.111277 GGAGAGGCAGAGGAGTTCTC 58.889 60.000 0.00 0.00 42.75 2.87
989 2875 0.738389 GAGAGGCAGAGGAGTTCTCG 59.262 60.000 0.00 0.00 46.82 4.04
1160 3062 1.153823 CCGGTAAGTCCTGCTCACG 60.154 63.158 0.00 0.00 0.00 4.35
1178 3080 2.228480 GCCCCCACACTCACCCTAA 61.228 63.158 0.00 0.00 0.00 2.69
1181 3083 0.840722 CCCCACACTCACCCTAACCT 60.841 60.000 0.00 0.00 0.00 3.50
1182 3084 0.613777 CCCACACTCACCCTAACCTC 59.386 60.000 0.00 0.00 0.00 3.85
1183 3085 1.348064 CCACACTCACCCTAACCTCA 58.652 55.000 0.00 0.00 0.00 3.86
1184 3086 1.002087 CCACACTCACCCTAACCTCAC 59.998 57.143 0.00 0.00 0.00 3.51
1185 3087 1.002087 CACACTCACCCTAACCTCACC 59.998 57.143 0.00 0.00 0.00 4.02
1186 3088 1.348064 CACTCACCCTAACCTCACCA 58.652 55.000 0.00 0.00 0.00 4.17
1187 3089 1.697432 CACTCACCCTAACCTCACCAA 59.303 52.381 0.00 0.00 0.00 3.67
1188 3090 1.978580 ACTCACCCTAACCTCACCAAG 59.021 52.381 0.00 0.00 0.00 3.61
1189 3091 1.978580 CTCACCCTAACCTCACCAAGT 59.021 52.381 0.00 0.00 0.00 3.16
1192 3094 1.697982 ACCCTAACCTCACCAAGTCAC 59.302 52.381 0.00 0.00 0.00 3.67
1203 3105 2.057922 ACCAAGTCACCAGTGATTCCT 58.942 47.619 3.41 0.00 42.18 3.36
1204 3106 2.443255 ACCAAGTCACCAGTGATTCCTT 59.557 45.455 3.41 0.37 42.18 3.36
1205 3107 3.077359 CCAAGTCACCAGTGATTCCTTC 58.923 50.000 3.41 0.00 42.18 3.46
1206 3108 3.077359 CAAGTCACCAGTGATTCCTTCC 58.923 50.000 3.41 0.00 42.18 3.46
1207 3109 2.338809 AGTCACCAGTGATTCCTTCCA 58.661 47.619 3.41 0.00 42.18 3.53
1208 3110 2.039084 AGTCACCAGTGATTCCTTCCAC 59.961 50.000 3.41 0.00 42.18 4.02
1209 3111 2.039084 GTCACCAGTGATTCCTTCCACT 59.961 50.000 3.41 0.00 43.73 4.00
1210 3112 2.303022 TCACCAGTGATTCCTTCCACTC 59.697 50.000 0.00 0.00 41.26 3.51
1211 3113 1.630878 ACCAGTGATTCCTTCCACTCC 59.369 52.381 0.00 0.00 41.26 3.85
1212 3114 1.630369 CCAGTGATTCCTTCCACTCCA 59.370 52.381 0.00 0.00 41.26 3.86
1213 3115 2.616510 CCAGTGATTCCTTCCACTCCAC 60.617 54.545 0.00 0.00 41.26 4.02
1281 3238 1.355210 CTGTGTTTCCGTGTGTGGC 59.645 57.895 0.00 0.00 0.00 5.01
1376 3340 0.788391 CACGTACGTTTCTTCCAGCC 59.212 55.000 20.23 0.00 0.00 4.85
1379 3343 0.675837 GTACGTTTCTTCCAGCCCCC 60.676 60.000 0.00 0.00 0.00 5.40
1444 3442 1.655654 CGCTAGCAGATCGTGACCG 60.656 63.158 16.45 0.00 0.00 4.79
1456 3454 3.311110 TGACCGGTCTGTCTGCCC 61.311 66.667 33.39 6.67 36.21 5.36
1474 3472 2.281761 CCCACCACAGTCTGCCAC 60.282 66.667 0.00 0.00 0.00 5.01
1509 3507 6.151648 ACACATGGACATGGAATTAAACAGAG 59.848 38.462 15.94 0.00 42.91 3.35
1518 3516 4.158394 TGGAATTAAACAGAGCTTCCATGC 59.842 41.667 1.19 0.00 40.21 4.06
1536 3534 2.212900 GCCAAAAGCAAGCCGTAGGG 62.213 60.000 0.00 0.00 46.76 3.53
1570 3571 1.199789 TGATTCAGCGGTGCATCAAAC 59.800 47.619 24.16 7.18 0.00 2.93
1625 3638 0.652592 CGACGAGGCCAATCATTCAC 59.347 55.000 5.01 0.00 0.00 3.18
1646 3659 2.032071 CTTCCGTGGGTGGTGGAC 59.968 66.667 0.00 0.00 0.00 4.02
1687 3700 1.892209 ACGGAGTGGTGAATTTGGTC 58.108 50.000 0.00 0.00 42.51 4.02
1694 3707 6.629515 CGGAGTGGTGAATTTGGTCTATAGAA 60.630 42.308 3.40 0.00 0.00 2.10
1785 3798 4.450419 CCAAGCTTATCTATCGGCTTTCAG 59.550 45.833 0.00 0.00 42.15 3.02
1856 3869 5.820423 GCGCTTCTCCTAGATAGATAGATCA 59.180 44.000 0.00 0.00 0.00 2.92
1857 3870 6.317642 GCGCTTCTCCTAGATAGATAGATCAA 59.682 42.308 0.00 0.00 0.00 2.57
1859 3872 8.344831 CGCTTCTCCTAGATAGATAGATCAATG 58.655 40.741 0.00 0.00 0.00 2.82
1860 3873 8.137437 GCTTCTCCTAGATAGATAGATCAATGC 58.863 40.741 0.00 0.00 0.00 3.56
1896 3909 2.407361 CGTCTACAAGATTTTGCGTCGT 59.593 45.455 0.00 0.00 37.85 4.34
1897 3910 3.718036 CGTCTACAAGATTTTGCGTCGTG 60.718 47.826 0.00 0.00 37.85 4.35
1898 3911 2.734606 TCTACAAGATTTTGCGTCGTGG 59.265 45.455 0.00 0.00 37.85 4.94
1917 3930 4.084013 CGTGGTATGAACAAGAGTTTGACC 60.084 45.833 0.00 0.00 38.30 4.02
1925 3938 1.002468 CAAGAGTTTGACCTGCAACCG 60.002 52.381 0.00 0.00 35.91 4.44
1990 4003 2.034221 GGGTCCCACTTGTCAGCC 59.966 66.667 1.78 0.00 0.00 4.85
2007 4020 2.033299 CAGCCGAAAGTCTTGCAGAAAA 59.967 45.455 0.00 0.00 0.00 2.29
2010 4023 3.550842 GCCGAAAGTCTTGCAGAAAATGT 60.551 43.478 0.00 0.00 0.00 2.71
2019 4032 6.656270 AGTCTTGCAGAAAATGTGATGTGATA 59.344 34.615 0.00 0.00 0.00 2.15
2041 4054 0.172578 TTACACGATGAGACTGGCGG 59.827 55.000 0.00 0.00 0.00 6.13
2042 4055 2.279502 TACACGATGAGACTGGCGGC 62.280 60.000 0.00 0.00 0.00 6.53
2046 4059 3.639445 ATGAGACTGGCGGCTCAT 58.361 55.556 20.46 20.46 44.26 2.90
2049 4062 1.332889 TGAGACTGGCGGCTCATGAT 61.333 55.000 11.43 0.00 36.31 2.45
2050 4063 0.179062 GAGACTGGCGGCTCATGATT 60.179 55.000 11.43 0.00 0.00 2.57
2051 4064 0.254178 AGACTGGCGGCTCATGATTT 59.746 50.000 11.43 0.00 0.00 2.17
2052 4065 1.098050 GACTGGCGGCTCATGATTTT 58.902 50.000 11.43 0.00 0.00 1.82
2053 4066 1.474077 GACTGGCGGCTCATGATTTTT 59.526 47.619 11.43 0.00 0.00 1.94
2110 4123 1.001487 CTTGTGCAGCCGAATTTCACA 60.001 47.619 0.00 0.00 36.07 3.58
2143 4156 7.584108 TGGACGCAATATACATCATTCAAATC 58.416 34.615 0.00 0.00 0.00 2.17
2145 4158 8.075574 GGACGCAATATACATCATTCAAATCAA 58.924 33.333 0.00 0.00 0.00 2.57
2146 4159 9.449550 GACGCAATATACATCATTCAAATCAAA 57.550 29.630 0.00 0.00 0.00 2.69
2167 4180 9.793252 ATCAAAAATTCAAATTATCCTGACGAG 57.207 29.630 0.00 0.00 0.00 4.18
2169 4182 9.624697 CAAAAATTCAAATTATCCTGACGAGAA 57.375 29.630 0.00 0.00 0.00 2.87
2238 4323 6.663944 ACTCGGTTTGAATTAGCAACTATC 57.336 37.500 0.00 0.00 0.00 2.08
2342 5840 5.061187 GCACTCTAACTCGCTAAAACTTCTC 59.939 44.000 0.00 0.00 0.00 2.87
2408 6439 1.584308 GTGCGCTCTAAAACTCGCTAG 59.416 52.381 9.73 0.00 46.73 3.42
2484 6638 8.338985 TGCATCTATCGTATTTTGCAAAATTC 57.661 30.769 35.18 29.22 39.24 2.17
2543 7005 8.969121 AAAGCAAAAGAAAACCAATTTTTGAG 57.031 26.923 11.44 0.00 40.94 3.02
2573 7087 5.745294 GCTCGGTTCACACGTCTTATAATAA 59.255 40.000 0.00 0.00 0.00 1.40
2578 7092 8.054236 CGGTTCACACGTCTTATAATAATGAAC 58.946 37.037 0.00 0.00 41.57 3.18
2614 7128 9.503399 AGTAAATTCGAGTTACCTGAAAGAAAT 57.497 29.630 14.23 0.00 34.07 2.17
2618 7132 5.860611 TCGAGTTACCTGAAAGAAATTCCA 58.139 37.500 0.00 0.00 37.22 3.53
2650 7164 5.749596 TTGTGTGTGGAACTGTTAGATTG 57.250 39.130 0.00 0.00 38.04 2.67
2667 7181 8.292448 TGTTAGATTGATTTGTTCTTCAAGCTC 58.708 33.333 6.69 0.00 43.07 4.09
2688 7202 5.029650 TCATGTAATGTTCACTCGCAAAC 57.970 39.130 0.00 0.00 46.80 2.93
2690 7204 4.466567 TGTAATGTTCACTCGCAAACAG 57.533 40.909 0.00 0.00 38.66 3.16
2693 7207 4.836125 AATGTTCACTCGCAAACAGAAT 57.164 36.364 0.00 0.00 38.66 2.40
2694 7208 5.940192 AATGTTCACTCGCAAACAGAATA 57.060 34.783 0.00 0.00 38.66 1.75
2857 7397 6.089249 CCCATTAGGCAATAAAATCACCTC 57.911 41.667 0.00 0.00 31.79 3.85
2869 7409 1.985473 ATCACCTCAAGCTTGCAACA 58.015 45.000 21.99 3.35 0.00 3.33
2970 7513 9.683069 AGCTGTTTTAGATGAAAATTTACTGTG 57.317 29.630 0.00 0.00 39.22 3.66
3320 8342 2.143925 GCTTCGGCAATCAGGTATACC 58.856 52.381 14.54 14.54 41.33 2.73
3379 8412 1.512926 GTGTGGTTGTACTGGCTCTG 58.487 55.000 0.00 0.00 0.00 3.35
4050 9113 1.070758 GCCAGGTTGAGACTTGAGACA 59.929 52.381 0.00 0.00 35.02 3.41
4059 9122 4.574892 TGAGACTTGAGACAAACACAACA 58.425 39.130 0.00 0.00 0.00 3.33
4078 9141 6.917477 CACAACACACATACAAACTGCTAATT 59.083 34.615 0.00 0.00 0.00 1.40
4079 9142 8.073167 CACAACACACATACAAACTGCTAATTA 58.927 33.333 0.00 0.00 0.00 1.40
4080 9143 8.625651 ACAACACACATACAAACTGCTAATTAA 58.374 29.630 0.00 0.00 0.00 1.40
4081 9144 9.624697 CAACACACATACAAACTGCTAATTAAT 57.375 29.630 0.00 0.00 0.00 1.40
4109 9172 0.816825 ATGTCTCACGCCATGGCATC 60.817 55.000 34.93 17.66 42.06 3.91
4112 9175 1.450848 CTCACGCCATGGCATCTGT 60.451 57.895 34.93 22.02 42.06 3.41
4586 9662 2.050985 GCGTGCTGACAACAAGGC 60.051 61.111 0.00 0.00 0.00 4.35
4591 9667 0.819259 TGCTGACAACAAGGCTCACC 60.819 55.000 0.00 0.00 0.00 4.02
4639 9715 4.141981 TGGAATGAGTTGTTGTGCATTGTT 60.142 37.500 0.00 0.00 31.65 2.83
4640 9716 4.209703 GGAATGAGTTGTTGTGCATTGTTG 59.790 41.667 0.00 0.00 31.65 3.33
4682 9758 8.951787 TGTAAGACACAGTTTAACATGTAAGT 57.048 30.769 0.00 0.00 31.89 2.24
4706 9782 3.558505 GCGGAATGCTTTGTATATGCAG 58.441 45.455 0.00 0.00 39.89 4.41
4732 9808 7.059488 GCAATGCAGCGTATGTTTATGTTATAC 59.941 37.037 0.00 0.00 0.00 1.47
4733 9809 7.962964 ATGCAGCGTATGTTTATGTTATACT 57.037 32.000 0.00 0.00 0.00 2.12
4734 9810 7.172654 TGCAGCGTATGTTTATGTTATACTG 57.827 36.000 0.00 0.00 0.00 2.74
4735 9811 6.759356 TGCAGCGTATGTTTATGTTATACTGT 59.241 34.615 0.00 0.00 0.00 3.55
4736 9812 7.921745 TGCAGCGTATGTTTATGTTATACTGTA 59.078 33.333 0.00 0.00 0.00 2.74
4751 9827 9.443323 TGTTATACTGTAACTTGTACCGTAGTA 57.557 33.333 0.00 0.00 0.00 1.82
4755 9831 7.277174 ACTGTAACTTGTACCGTAGTAACTT 57.723 36.000 0.00 0.00 0.00 2.66
4756 9832 8.391075 ACTGTAACTTGTACCGTAGTAACTTA 57.609 34.615 0.00 0.00 0.00 2.24
4792 10129 3.730761 GCGCTTGGTGTGAGCCTG 61.731 66.667 0.00 0.00 36.81 4.85
4832 10169 5.746245 CCAAAGCGTCAAAACTGATACAAAA 59.254 36.000 0.00 0.00 0.00 2.44
4853 10191 8.400947 ACAAAATGATGAGAAAATCCGATACAG 58.599 33.333 0.00 0.00 0.00 2.74
4857 10195 9.650539 AATGATGAGAAAATCCGATACAGATAG 57.349 33.333 0.00 0.00 0.00 2.08
4906 10244 1.340889 TGGCACTCACCAATTCAAAGC 59.659 47.619 0.00 0.00 36.55 3.51
5053 10401 1.408422 GTGTGGCAATCTGCGAAAAC 58.592 50.000 0.00 0.00 46.21 2.43
5060 10408 2.046313 CAATCTGCGAAAACTGTGCAC 58.954 47.619 10.75 10.75 34.42 4.57
5071 10419 3.618780 CTGTGCACCTGGGAGGCTC 62.619 68.421 15.69 5.78 39.63 4.70
5072 10420 3.640407 GTGCACCTGGGAGGCTCA 61.640 66.667 17.69 0.00 39.63 4.26
5087 10435 1.153823 CTCACTGCCGAGGTTACCG 60.154 63.158 0.00 0.00 0.00 4.02
5090 10438 1.904865 ACTGCCGAGGTTACCGACA 60.905 57.895 0.00 0.00 0.00 4.35
5091 10439 1.153823 CTGCCGAGGTTACCGACAG 60.154 63.158 0.00 0.00 31.85 3.51
5092 10440 2.183555 GCCGAGGTTACCGACAGG 59.816 66.667 0.00 0.00 45.13 4.00
5093 10441 2.345760 GCCGAGGTTACCGACAGGA 61.346 63.158 10.52 0.00 41.02 3.86
5094 10442 1.880819 GCCGAGGTTACCGACAGGAA 61.881 60.000 10.52 0.00 41.02 3.36
5095 10443 0.108945 CCGAGGTTACCGACAGGAAC 60.109 60.000 0.00 0.00 41.02 3.62
5096 10444 0.455633 CGAGGTTACCGACAGGAACG 60.456 60.000 0.00 0.00 41.02 3.95
5097 10445 0.735287 GAGGTTACCGACAGGAACGC 60.735 60.000 0.00 0.00 41.02 4.84
5098 10446 1.183676 AGGTTACCGACAGGAACGCT 61.184 55.000 0.00 0.00 41.02 5.07
5099 10447 0.527565 GGTTACCGACAGGAACGCTA 59.472 55.000 0.00 0.00 41.02 4.26
5100 10448 1.067635 GGTTACCGACAGGAACGCTAA 60.068 52.381 0.00 0.00 41.02 3.09
5101 10449 2.417787 GGTTACCGACAGGAACGCTAAT 60.418 50.000 0.00 0.00 41.02 1.73
5102 10450 3.181487 GGTTACCGACAGGAACGCTAATA 60.181 47.826 0.00 0.00 41.02 0.98
5103 10451 4.500375 GGTTACCGACAGGAACGCTAATAT 60.500 45.833 0.00 0.00 41.02 1.28
5104 10452 3.093717 ACCGACAGGAACGCTAATATG 57.906 47.619 0.00 0.00 41.02 1.78
5105 10453 1.792949 CCGACAGGAACGCTAATATGC 59.207 52.381 0.00 0.00 41.02 3.14
5117 10465 4.014847 GCTAATATGCGAAAACTGTGCA 57.985 40.909 0.00 0.00 43.67 4.57
5118 10466 3.786048 GCTAATATGCGAAAACTGTGCAC 59.214 43.478 10.75 10.75 42.11 4.57
5119 10467 2.919666 ATATGCGAAAACTGTGCACC 57.080 45.000 15.69 0.00 42.11 5.01
5120 10468 1.890876 TATGCGAAAACTGTGCACCT 58.109 45.000 15.69 0.00 42.11 4.00
5121 10469 0.311790 ATGCGAAAACTGTGCACCTG 59.688 50.000 15.69 9.91 42.11 4.00
5122 10470 1.008538 GCGAAAACTGTGCACCTGG 60.009 57.895 15.69 7.20 0.00 4.45
5123 10471 1.654220 CGAAAACTGTGCACCTGGG 59.346 57.895 15.69 4.57 0.00 4.45
5124 10472 0.817634 CGAAAACTGTGCACCTGGGA 60.818 55.000 15.69 0.00 0.00 4.37
5125 10473 0.954452 GAAAACTGTGCACCTGGGAG 59.046 55.000 15.69 7.00 0.00 4.30
5126 10474 0.468029 AAAACTGTGCACCTGGGAGG 60.468 55.000 15.69 0.00 42.49 4.30
5127 10475 2.983725 AAACTGTGCACCTGGGAGGC 62.984 60.000 15.69 0.00 39.63 4.70
5128 10476 3.644606 CTGTGCACCTGGGAGGCT 61.645 66.667 15.69 0.00 39.63 4.58
5129 10477 3.618780 CTGTGCACCTGGGAGGCTC 62.619 68.421 15.69 5.78 39.63 4.70
5130 10478 3.640407 GTGCACCTGGGAGGCTCA 61.640 66.667 17.69 0.00 39.63 4.26
5131 10479 3.640407 TGCACCTGGGAGGCTCAC 61.640 66.667 17.69 14.38 39.63 3.51
5132 10480 3.325753 GCACCTGGGAGGCTCACT 61.326 66.667 19.15 0.00 39.63 3.41
5133 10481 2.667418 CACCTGGGAGGCTCACTG 59.333 66.667 19.15 17.47 39.63 3.66
5134 10482 3.325753 ACCTGGGAGGCTCACTGC 61.326 66.667 19.15 0.00 39.63 4.40
5143 10491 4.187056 GCTCACTGCCGAGGTTAC 57.813 61.111 0.00 0.00 33.36 2.50
5144 10492 1.448013 GCTCACTGCCGAGGTTACC 60.448 63.158 0.00 0.00 33.36 2.85
5145 10493 1.153823 CTCACTGCCGAGGTTACCG 60.154 63.158 0.00 0.00 0.00 4.02
5146 10494 1.592400 CTCACTGCCGAGGTTACCGA 61.592 60.000 0.00 0.00 0.00 4.69
5147 10495 1.445582 CACTGCCGAGGTTACCGAC 60.446 63.158 0.00 0.00 0.00 4.79
5148 10496 1.904865 ACTGCCGAGGTTACCGACA 60.905 57.895 0.00 0.00 0.00 4.35
5190 10538 0.657312 CAGTTGTGCTGTGAGCGAAA 59.343 50.000 0.00 0.00 46.26 3.46
5197 10545 1.343142 TGCTGTGAGCGAAAACTAGGA 59.657 47.619 0.00 0.00 46.26 2.94
5210 10559 6.404954 GCGAAAACTAGGAGAAGACAGTAGAT 60.405 42.308 0.00 0.00 0.00 1.98
5211 10560 7.190871 CGAAAACTAGGAGAAGACAGTAGATC 58.809 42.308 0.00 0.00 0.00 2.75
5216 10565 3.118702 AGGAGAAGACAGTAGATCGACGA 60.119 47.826 0.00 0.00 0.00 4.20
5217 10566 3.001533 GGAGAAGACAGTAGATCGACGAC 59.998 52.174 0.00 0.00 0.00 4.34
5219 10568 1.288350 AGACAGTAGATCGACGACCG 58.712 55.000 0.00 0.00 40.25 4.79
5232 10581 1.299165 CGACCGAGCTTATCCACCG 60.299 63.158 0.00 0.00 0.00 4.94
5287 11812 1.616374 TCTCGGTGCAGTCATGTGTAA 59.384 47.619 0.00 0.00 0.00 2.41
5307 11832 6.368516 GTGTAATTAGGCTTGTAACGGTGTTA 59.631 38.462 0.00 0.00 0.00 2.41
5327 11852 0.449388 GGGCATGTTCTTCGCTTCTG 59.551 55.000 0.00 0.00 0.00 3.02
5412 11937 2.490993 CTTGCCCCCATCAAACGTGC 62.491 60.000 0.00 0.00 0.00 5.34
5415 11940 2.342650 CCCCCATCAAACGTGCCTG 61.343 63.158 0.00 0.00 0.00 4.85
5418 11943 1.659233 CCATCAAACGTGCCTGCAA 59.341 52.632 0.00 0.00 0.00 4.08
5456 11981 2.600470 GGTGACCCAGCAAACCCC 60.600 66.667 0.00 0.00 0.00 4.95
5457 11982 2.983592 GTGACCCAGCAAACCCCG 60.984 66.667 0.00 0.00 0.00 5.73
5458 11983 3.172106 TGACCCAGCAAACCCCGA 61.172 61.111 0.00 0.00 0.00 5.14
5459 11984 2.355115 GACCCAGCAAACCCCGAT 59.645 61.111 0.00 0.00 0.00 4.18
5460 11985 1.749258 GACCCAGCAAACCCCGATC 60.749 63.158 0.00 0.00 0.00 3.69
5461 11986 2.198304 GACCCAGCAAACCCCGATCT 62.198 60.000 0.00 0.00 0.00 2.75
5462 11987 1.452108 CCCAGCAAACCCCGATCTC 60.452 63.158 0.00 0.00 0.00 2.75
5463 11988 1.815421 CCAGCAAACCCCGATCTCG 60.815 63.158 0.00 0.00 39.44 4.04
5464 11989 2.125106 AGCAAACCCCGATCTCGC 60.125 61.111 0.00 0.00 38.18 5.03
5465 11990 3.202706 GCAAACCCCGATCTCGCC 61.203 66.667 0.00 0.00 38.18 5.54
5466 11991 2.890474 CAAACCCCGATCTCGCCG 60.890 66.667 0.00 0.00 38.18 6.46
5467 11992 4.157120 AAACCCCGATCTCGCCGG 62.157 66.667 0.00 0.00 46.10 6.13
5473 11998 4.271816 CGATCTCGCCGGGTCCAG 62.272 72.222 2.18 0.00 0.00 3.86
5474 11999 4.593864 GATCTCGCCGGGTCCAGC 62.594 72.222 2.18 0.00 0.00 4.85
5483 12008 2.358247 GGGTCCAGCGCGAAGAAA 60.358 61.111 12.10 0.00 0.00 2.52
5484 12009 2.391389 GGGTCCAGCGCGAAGAAAG 61.391 63.158 12.10 0.00 0.00 2.62
5485 12010 2.476499 GTCCAGCGCGAAGAAAGC 59.524 61.111 12.10 0.00 0.00 3.51
5486 12011 2.029844 GTCCAGCGCGAAGAAAGCT 61.030 57.895 12.10 0.00 42.64 3.74
5487 12012 1.738099 TCCAGCGCGAAGAAAGCTC 60.738 57.895 12.10 0.00 39.48 4.09
5488 12013 2.393362 CAGCGCGAAGAAAGCTCG 59.607 61.111 12.10 0.00 39.48 5.03
5489 12014 2.049063 AGCGCGAAGAAAGCTCGT 60.049 55.556 12.10 0.00 36.33 4.18
5490 12015 2.094724 GCGCGAAGAAAGCTCGTG 59.905 61.111 12.10 1.86 39.91 4.35
5491 12016 2.094724 CGCGAAGAAAGCTCGTGC 59.905 61.111 0.00 0.07 40.05 5.34
5519 12044 1.153756 CCCACCCAAACCAAGAGCT 59.846 57.895 0.00 0.00 0.00 4.09
5520 12045 0.895559 CCCACCCAAACCAAGAGCTC 60.896 60.000 5.27 5.27 0.00 4.09
5523 12048 1.675641 CCCAAACCAAGAGCTCGGG 60.676 63.158 21.54 21.54 0.00 5.14
5525 12050 1.600636 CAAACCAAGAGCTCGGGCA 60.601 57.895 22.65 0.00 41.70 5.36
5572 12097 2.403252 AGGAAAGGCAATGTACCTCG 57.597 50.000 0.00 0.00 36.14 4.63
5573 12098 0.733150 GGAAAGGCAATGTACCTCGC 59.267 55.000 0.00 0.00 36.14 5.03
5576 12101 3.573491 GGCAATGTACCTCGCGCC 61.573 66.667 0.00 0.00 0.00 6.53
5578 12103 2.395360 GCAATGTACCTCGCGCCAA 61.395 57.895 0.00 0.00 0.00 4.52
5580 12105 0.096976 CAATGTACCTCGCGCCAAAG 59.903 55.000 0.00 0.00 0.00 2.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
60 61 9.536558 CGTTCGAAATTACTTGTCATCAAAATA 57.463 29.630 0.00 0.00 32.87 1.40
61 62 8.286800 TCGTTCGAAATTACTTGTCATCAAAAT 58.713 29.630 0.00 0.00 32.87 1.82
62 63 7.631822 TCGTTCGAAATTACTTGTCATCAAAA 58.368 30.769 0.00 0.00 32.87 2.44
63 64 7.179927 TCGTTCGAAATTACTTGTCATCAAA 57.820 32.000 0.00 0.00 32.87 2.69
64 65 6.772770 TCGTTCGAAATTACTTGTCATCAA 57.227 33.333 0.00 0.00 0.00 2.57
65 66 6.643360 TCTTCGTTCGAAATTACTTGTCATCA 59.357 34.615 0.00 0.00 0.00 3.07
66 67 7.045725 TCTTCGTTCGAAATTACTTGTCATC 57.954 36.000 0.00 0.00 0.00 2.92
67 68 6.866770 TCTCTTCGTTCGAAATTACTTGTCAT 59.133 34.615 0.00 0.00 0.00 3.06
68 69 6.210796 TCTCTTCGTTCGAAATTACTTGTCA 58.789 36.000 0.00 0.00 0.00 3.58
69 70 6.362820 ACTCTCTTCGTTCGAAATTACTTGTC 59.637 38.462 0.00 0.00 0.00 3.18
70 71 6.214399 ACTCTCTTCGTTCGAAATTACTTGT 58.786 36.000 0.00 0.00 0.00 3.16
71 72 6.692232 ACTCTCTTCGTTCGAAATTACTTG 57.308 37.500 0.00 0.00 0.00 3.16
72 73 7.592051 ACTACTCTCTTCGTTCGAAATTACTT 58.408 34.615 0.00 0.00 0.00 2.24
73 74 7.143514 ACTACTCTCTTCGTTCGAAATTACT 57.856 36.000 0.00 0.00 0.00 2.24
74 75 9.500864 AATACTACTCTCTTCGTTCGAAATTAC 57.499 33.333 0.00 0.00 0.00 1.89
76 77 8.983307 AAATACTACTCTCTTCGTTCGAAATT 57.017 30.769 0.00 0.78 0.00 1.82
77 78 8.983307 AAAATACTACTCTCTTCGTTCGAAAT 57.017 30.769 0.00 0.00 0.00 2.17
78 79 7.540055 GGAAAATACTACTCTCTTCGTTCGAAA 59.460 37.037 0.00 0.78 0.00 3.46
79 80 7.025963 GGAAAATACTACTCTCTTCGTTCGAA 58.974 38.462 7.40 7.40 0.00 3.71
80 81 6.549952 GGAAAATACTACTCTCTTCGTTCGA 58.450 40.000 0.00 0.00 0.00 3.71
81 82 5.451662 CGGAAAATACTACTCTCTTCGTTCG 59.548 44.000 0.00 0.00 0.00 3.95
82 83 5.742926 CCGGAAAATACTACTCTCTTCGTTC 59.257 44.000 0.00 0.00 0.00 3.95
83 84 5.184671 ACCGGAAAATACTACTCTCTTCGTT 59.815 40.000 9.46 0.00 0.00 3.85
84 85 4.704057 ACCGGAAAATACTACTCTCTTCGT 59.296 41.667 9.46 0.00 0.00 3.85
85 86 5.035443 CACCGGAAAATACTACTCTCTTCG 58.965 45.833 9.46 0.00 0.00 3.79
86 87 6.205101 TCACCGGAAAATACTACTCTCTTC 57.795 41.667 9.46 0.00 0.00 2.87
87 88 5.394333 GCTCACCGGAAAATACTACTCTCTT 60.394 44.000 9.46 0.00 0.00 2.85
88 89 4.098196 GCTCACCGGAAAATACTACTCTCT 59.902 45.833 9.46 0.00 0.00 3.10
89 90 4.098196 AGCTCACCGGAAAATACTACTCTC 59.902 45.833 9.46 0.00 0.00 3.20
90 91 4.024670 AGCTCACCGGAAAATACTACTCT 58.975 43.478 9.46 0.00 0.00 3.24
91 92 4.388378 AGCTCACCGGAAAATACTACTC 57.612 45.455 9.46 0.00 0.00 2.59
92 93 4.820894 AAGCTCACCGGAAAATACTACT 57.179 40.909 9.46 0.00 0.00 2.57
93 94 4.694037 ACAAAGCTCACCGGAAAATACTAC 59.306 41.667 9.46 0.00 0.00 2.73
94 95 4.901868 ACAAAGCTCACCGGAAAATACTA 58.098 39.130 9.46 0.00 0.00 1.82
95 96 3.751518 ACAAAGCTCACCGGAAAATACT 58.248 40.909 9.46 0.00 0.00 2.12
96 97 3.119955 GGACAAAGCTCACCGGAAAATAC 60.120 47.826 9.46 0.00 0.00 1.89
103 104 0.606401 ACATGGACAAAGCTCACCGG 60.606 55.000 0.00 0.00 0.00 5.28
129 130 3.286751 GTGCCTGGCAGTTTCGCA 61.287 61.111 24.10 12.74 40.08 5.10
131 132 3.365265 GGGTGCCTGGCAGTTTCG 61.365 66.667 24.10 0.00 40.08 3.46
152 154 7.720442 TGATGGATTACTTACTCTGTGATGAG 58.280 38.462 0.00 0.00 39.78 2.90
159 161 3.738282 GCGCTGATGGATTACTTACTCTG 59.262 47.826 0.00 0.00 0.00 3.35
161 163 3.060602 GGCGCTGATGGATTACTTACTC 58.939 50.000 7.64 0.00 0.00 2.59
300 302 1.035139 AATCATGCAATCCCGGAAGC 58.965 50.000 0.73 8.00 0.00 3.86
349 1813 5.224888 GCAGCATTTGACTGATCTGAAAAA 58.775 37.500 6.60 6.73 37.32 1.94
350 1814 4.614306 CGCAGCATTTGACTGATCTGAAAA 60.614 41.667 6.60 7.06 37.32 2.29
351 1815 3.120095 CGCAGCATTTGACTGATCTGAAA 60.120 43.478 6.60 0.00 37.32 2.69
402 1906 4.992319 GCCGTGCATACATGTACCTATTAA 59.008 41.667 7.96 0.00 39.77 1.40
404 1908 3.181459 TGCCGTGCATACATGTACCTATT 60.181 43.478 7.96 0.00 39.77 1.73
405 1909 2.367241 TGCCGTGCATACATGTACCTAT 59.633 45.455 7.96 0.00 39.77 2.57
406 1910 1.757699 TGCCGTGCATACATGTACCTA 59.242 47.619 7.96 0.00 39.77 3.08
407 1911 0.539518 TGCCGTGCATACATGTACCT 59.460 50.000 7.96 0.00 39.77 3.08
408 1912 0.937304 CTGCCGTGCATACATGTACC 59.063 55.000 7.96 3.07 39.77 3.34
409 1913 0.304705 GCTGCCGTGCATACATGTAC 59.695 55.000 7.96 0.00 38.13 2.90
411 1915 2.114670 GGCTGCCGTGCATACATGT 61.115 57.895 1.35 2.69 38.13 3.21
439 2127 3.858989 TGTGTGTGTGTGTGCGCG 61.859 61.111 0.00 0.00 0.00 6.86
440 2128 2.277247 GTGTGTGTGTGTGTGCGC 60.277 61.111 0.00 0.00 0.00 6.09
441 2129 2.021243 CGTGTGTGTGTGTGTGCG 59.979 61.111 0.00 0.00 0.00 5.34
442 2130 1.436195 ATCCGTGTGTGTGTGTGTGC 61.436 55.000 0.00 0.00 0.00 4.57
443 2131 1.013596 AATCCGTGTGTGTGTGTGTG 58.986 50.000 0.00 0.00 0.00 3.82
444 2132 1.400142 CAAATCCGTGTGTGTGTGTGT 59.600 47.619 0.00 0.00 0.00 3.72
445 2133 1.668237 TCAAATCCGTGTGTGTGTGTG 59.332 47.619 0.00 0.00 0.00 3.82
446 2134 1.668751 GTCAAATCCGTGTGTGTGTGT 59.331 47.619 0.00 0.00 0.00 3.72
447 2135 1.002900 GGTCAAATCCGTGTGTGTGTG 60.003 52.381 0.00 0.00 0.00 3.82
448 2136 1.305201 GGTCAAATCCGTGTGTGTGT 58.695 50.000 0.00 0.00 0.00 3.72
564 2277 2.413634 CGGTTCTAAATTCACGGTTGGC 60.414 50.000 0.00 0.00 0.00 4.52
570 2283 8.311120 GCAAATTAAATCGGTTCTAAATTCACG 58.689 33.333 0.00 0.00 0.00 4.35
583 2296 5.565259 GTGATATCGCAGCAAATTAAATCGG 59.435 40.000 11.44 0.00 0.00 4.18
599 2312 7.350467 CAATTGATTGACTTGGAGTGATATCG 58.650 38.462 0.00 0.00 40.14 2.92
603 2316 5.014858 AGCAATTGATTGACTTGGAGTGAT 58.985 37.500 10.34 0.00 40.14 3.06
618 2331 6.367686 TCGTAAGATACTCGTAGCAATTGA 57.632 37.500 10.34 0.00 45.01 2.57
640 2362 1.067060 GGGCTCCAACCGCATAAATTC 59.933 52.381 0.00 0.00 0.00 2.17
641 2363 1.111277 GGGCTCCAACCGCATAAATT 58.889 50.000 0.00 0.00 0.00 1.82
645 2367 4.169696 CGGGGCTCCAACCGCATA 62.170 66.667 1.96 0.00 43.96 3.14
653 2375 1.661990 ATCTAGTACCCGGGGCTCCA 61.662 60.000 27.92 12.38 0.00 3.86
667 2389 4.351874 TTCCGGCCCAGATAAAATCTAG 57.648 45.455 0.00 0.00 37.58 2.43
668 2390 4.349636 TCATTCCGGCCCAGATAAAATCTA 59.650 41.667 0.00 0.00 37.58 1.98
669 2391 3.138283 TCATTCCGGCCCAGATAAAATCT 59.862 43.478 0.00 0.00 41.15 2.40
679 2401 4.776322 CACGCTCATTCCGGCCCA 62.776 66.667 0.00 0.00 0.00 5.36
687 2409 2.746277 GGCCGAACCACGCTCATT 60.746 61.111 0.00 0.00 41.07 2.57
688 2410 4.778143 GGGCCGAACCACGCTCAT 62.778 66.667 0.00 0.00 42.05 2.90
718 2525 2.667199 CCGTTGACGTTGACCCCC 60.667 66.667 2.63 0.00 37.74 5.40
759 2569 0.524816 GCTGTGCATTCAAGGCGATG 60.525 55.000 0.00 0.00 0.00 3.84
776 2586 1.067142 CACAAAAGCCATGCTGATGCT 60.067 47.619 0.00 0.00 39.62 3.79
781 2591 1.144969 CTTGCACAAAAGCCATGCTG 58.855 50.000 0.00 0.00 39.62 4.41
782 2592 1.042229 TCTTGCACAAAAGCCATGCT 58.958 45.000 0.00 0.00 42.56 3.79
783 2593 1.796459 CTTCTTGCACAAAAGCCATGC 59.204 47.619 0.00 0.00 39.88 4.06
784 2594 3.374220 TCTTCTTGCACAAAAGCCATG 57.626 42.857 0.00 0.00 0.00 3.66
785 2595 4.405116 TTTCTTCTTGCACAAAAGCCAT 57.595 36.364 0.00 0.00 0.00 4.40
788 2598 3.426525 CCGATTTCTTCTTGCACAAAAGC 59.573 43.478 0.00 0.00 0.00 3.51
791 2601 2.604373 CGCCGATTTCTTCTTGCACAAA 60.604 45.455 0.00 0.00 0.00 2.83
792 2602 1.069296 CGCCGATTTCTTCTTGCACAA 60.069 47.619 0.00 0.00 0.00 3.33
793 2603 0.516877 CGCCGATTTCTTCTTGCACA 59.483 50.000 0.00 0.00 0.00 4.57
795 2605 1.501741 GCGCCGATTTCTTCTTGCA 59.498 52.632 0.00 0.00 0.00 4.08
796 2606 1.226407 GGCGCCGATTTCTTCTTGC 60.226 57.895 12.58 0.00 0.00 4.01
797 2607 0.734889 ATGGCGCCGATTTCTTCTTG 59.265 50.000 23.90 0.00 0.00 3.02
798 2608 2.325583 TATGGCGCCGATTTCTTCTT 57.674 45.000 23.90 0.00 0.00 2.52
800 2610 3.300009 CAATTATGGCGCCGATTTCTTC 58.700 45.455 23.90 0.00 0.00 2.87
810 2628 0.589729 CGAGTGTGCAATTATGGCGC 60.590 55.000 0.00 0.00 41.95 6.53
837 2683 2.517402 CTCTCTCCTCGTCCCGGG 60.517 72.222 16.85 16.85 0.00 5.73
858 2704 6.491745 CACGGCCATATATAGATGTCTCCTAT 59.508 42.308 2.24 0.00 0.00 2.57
900 2776 1.427020 GCACGGAGAAGCAATGCTC 59.573 57.895 8.71 2.19 38.25 4.26
920 2796 1.141449 CAAGGAGGAGAGCTCGCTG 59.859 63.158 17.35 3.38 0.00 5.18
938 2824 3.708220 CTCGAGCAAGGACCGAGGC 62.708 68.421 0.00 0.00 44.11 4.70
946 2832 1.151668 CCAAGAACACTCGAGCAAGG 58.848 55.000 13.61 2.21 0.00 3.61
953 2839 2.163412 CTCTCCTCTCCAAGAACACTCG 59.837 54.545 0.00 0.00 0.00 4.18
987 2873 1.527148 CGCCATCCTCTCTCTCCGA 60.527 63.158 0.00 0.00 0.00 4.55
988 2874 2.560119 CCGCCATCCTCTCTCTCCG 61.560 68.421 0.00 0.00 0.00 4.63
989 2875 2.206536 CCCGCCATCCTCTCTCTCC 61.207 68.421 0.00 0.00 0.00 3.71
1160 3062 2.228480 TTAGGGTGAGTGTGGGGGC 61.228 63.158 0.00 0.00 0.00 5.80
1170 3072 1.975680 GACTTGGTGAGGTTAGGGTGA 59.024 52.381 0.00 0.00 0.00 4.02
1175 3077 2.368875 ACTGGTGACTTGGTGAGGTTAG 59.631 50.000 0.00 0.00 0.00 2.34
1176 3078 2.104111 CACTGGTGACTTGGTGAGGTTA 59.896 50.000 0.00 0.00 32.12 2.85
1178 3080 0.469917 CACTGGTGACTTGGTGAGGT 59.530 55.000 0.00 0.00 32.12 3.85
1181 3083 2.224523 GGAATCACTGGTGACTTGGTGA 60.225 50.000 5.52 7.82 43.11 4.02
1182 3084 2.154462 GGAATCACTGGTGACTTGGTG 58.846 52.381 5.52 0.00 43.11 4.17
1183 3085 2.057922 AGGAATCACTGGTGACTTGGT 58.942 47.619 5.52 0.00 43.11 3.67
1184 3086 2.867109 AGGAATCACTGGTGACTTGG 57.133 50.000 5.52 0.00 43.11 3.61
1185 3087 3.077359 GGAAGGAATCACTGGTGACTTG 58.923 50.000 5.52 0.00 43.11 3.16
1186 3088 2.711009 TGGAAGGAATCACTGGTGACTT 59.289 45.455 5.52 5.36 43.11 3.01
1187 3089 2.039084 GTGGAAGGAATCACTGGTGACT 59.961 50.000 5.52 0.00 43.11 3.41
1188 3090 2.039084 AGTGGAAGGAATCACTGGTGAC 59.961 50.000 5.52 0.00 43.11 3.67
1189 3091 2.303022 GAGTGGAAGGAATCACTGGTGA 59.697 50.000 5.87 5.87 43.41 4.02
1192 3094 1.630369 TGGAGTGGAAGGAATCACTGG 59.370 52.381 0.42 0.00 43.41 4.00
1203 3105 1.074090 TGGGTGGAGTGGAGTGGAA 60.074 57.895 0.00 0.00 0.00 3.53
1204 3106 1.841556 GTGGGTGGAGTGGAGTGGA 60.842 63.158 0.00 0.00 0.00 4.02
1205 3107 2.750350 GTGGGTGGAGTGGAGTGG 59.250 66.667 0.00 0.00 0.00 4.00
1206 3108 2.750350 GGTGGGTGGAGTGGAGTG 59.250 66.667 0.00 0.00 0.00 3.51
1207 3109 2.923035 CGGTGGGTGGAGTGGAGT 60.923 66.667 0.00 0.00 0.00 3.85
1208 3110 2.923035 ACGGTGGGTGGAGTGGAG 60.923 66.667 0.00 0.00 0.00 3.86
1209 3111 2.920912 GACGGTGGGTGGAGTGGA 60.921 66.667 0.00 0.00 0.00 4.02
1210 3112 2.516888 AAGACGGTGGGTGGAGTGG 61.517 63.158 0.00 0.00 0.00 4.00
1211 3113 1.301716 CAAGACGGTGGGTGGAGTG 60.302 63.158 0.00 0.00 0.00 3.51
1212 3114 1.755393 GACAAGACGGTGGGTGGAGT 61.755 60.000 0.00 0.00 0.00 3.85
1213 3115 1.004918 GACAAGACGGTGGGTGGAG 60.005 63.158 0.00 0.00 0.00 3.86
1379 3343 4.176752 GGAGGGGCCACGGCTAAG 62.177 72.222 4.39 0.00 41.60 2.18
1456 3454 3.569210 TGGCAGACTGTGGTGGGG 61.569 66.667 3.99 0.00 0.00 4.96
1478 3476 2.751436 ATGTCCATGTGTGGCGCC 60.751 61.111 22.73 22.73 45.63 6.53
1481 3479 1.477553 ATTCCATGTCCATGTGTGGC 58.522 50.000 6.53 0.00 45.63 5.01
1500 3498 3.153369 TGGCATGGAAGCTCTGTTTAA 57.847 42.857 0.00 0.00 34.17 1.52
1501 3499 2.877097 TGGCATGGAAGCTCTGTTTA 57.123 45.000 0.00 0.00 34.17 2.01
1502 3500 1.999648 TTGGCATGGAAGCTCTGTTT 58.000 45.000 0.00 0.00 34.17 2.83
1518 3516 1.883021 CCCTACGGCTTGCTTTTGG 59.117 57.895 0.00 0.00 0.00 3.28
1530 3528 1.887707 GAAATCCGGCAGCCCTACG 60.888 63.158 5.63 0.00 0.00 3.51
1532 3530 0.107214 CAAGAAATCCGGCAGCCCTA 60.107 55.000 5.63 0.00 0.00 3.53
1536 3534 1.745087 TGAATCAAGAAATCCGGCAGC 59.255 47.619 0.00 0.00 0.00 5.25
1537 3535 2.223433 GCTGAATCAAGAAATCCGGCAG 60.223 50.000 0.00 0.00 0.00 4.85
1538 3536 1.745087 GCTGAATCAAGAAATCCGGCA 59.255 47.619 0.00 0.00 0.00 5.69
1539 3537 1.268234 CGCTGAATCAAGAAATCCGGC 60.268 52.381 0.00 0.00 0.00 6.13
1541 3539 2.009774 ACCGCTGAATCAAGAAATCCG 58.990 47.619 0.00 0.00 0.00 4.18
1570 3571 0.732880 AAGATGAGCCGTCGTGTTCG 60.733 55.000 0.00 0.00 38.55 3.95
1646 3659 2.278596 AATGATCGCGTCGACCCG 60.279 61.111 16.24 16.24 39.18 5.28
1687 3700 6.017026 TCTCCACTGCATTAGTCGTTCTATAG 60.017 42.308 0.00 0.00 37.60 1.31
1694 3707 2.675317 GCTTCTCCACTGCATTAGTCGT 60.675 50.000 0.00 0.00 37.60 4.34
1731 3744 2.949714 ACACGACTCTGAATTTTGCG 57.050 45.000 0.00 0.00 0.00 4.85
1785 3798 4.694509 GGTGATATCATCATCAGCCTGAAC 59.305 45.833 11.25 0.00 44.13 3.18
1856 3869 4.619227 CGATACCCCGGCCGCATT 62.619 66.667 22.85 7.84 0.00 3.56
1876 3889 3.423123 CCACGACGCAAAATCTTGTAGAC 60.423 47.826 0.00 0.00 34.79 2.59
1896 3909 5.063204 CAGGTCAAACTCTTGTTCATACCA 58.937 41.667 0.00 0.00 35.94 3.25
1897 3910 4.083271 GCAGGTCAAACTCTTGTTCATACC 60.083 45.833 0.00 0.00 34.96 2.73
1898 3911 4.515191 TGCAGGTCAAACTCTTGTTCATAC 59.485 41.667 0.00 0.00 34.96 2.39
1917 3930 2.436646 CAGTAGCCCCGGTTGCAG 60.437 66.667 14.82 0.00 0.00 4.41
1964 3977 2.048503 GTGGGACCCTCGTTGTCG 60.049 66.667 13.00 0.00 33.46 4.35
1971 3984 1.003233 GCTGACAAGTGGGACCCTC 60.003 63.158 13.00 8.50 0.00 4.30
2007 4020 7.209475 TCATCGTGTAATGTATCACATCACAT 58.791 34.615 0.00 0.00 38.83 3.21
2010 4023 6.918022 GTCTCATCGTGTAATGTATCACATCA 59.082 38.462 0.00 0.00 37.97 3.07
2019 4032 2.735444 CGCCAGTCTCATCGTGTAATGT 60.735 50.000 0.00 0.00 0.00 2.71
2028 4041 0.879400 CATGAGCCGCCAGTCTCATC 60.879 60.000 2.11 0.00 45.35 2.92
2055 4068 8.125978 ACAATTCATGAGCCTATTCTCAAAAA 57.874 30.769 0.00 0.00 45.17 1.94
2056 4069 7.707624 ACAATTCATGAGCCTATTCTCAAAA 57.292 32.000 0.00 0.00 45.17 2.44
2057 4070 7.707624 AACAATTCATGAGCCTATTCTCAAA 57.292 32.000 0.00 0.00 45.17 2.69
2058 4071 7.363181 CCAAACAATTCATGAGCCTATTCTCAA 60.363 37.037 0.00 0.00 45.17 3.02
2059 4072 6.095860 CCAAACAATTCATGAGCCTATTCTCA 59.904 38.462 0.00 0.00 45.97 3.27
2060 4073 6.096001 ACCAAACAATTCATGAGCCTATTCTC 59.904 38.462 0.00 0.00 0.00 2.87
2061 4074 5.954150 ACCAAACAATTCATGAGCCTATTCT 59.046 36.000 0.00 0.00 0.00 2.40
2062 4075 6.038356 CACCAAACAATTCATGAGCCTATTC 58.962 40.000 0.00 0.00 0.00 1.75
2063 4076 5.625197 GCACCAAACAATTCATGAGCCTATT 60.625 40.000 0.00 0.00 0.00 1.73
2064 4077 4.142093 GCACCAAACAATTCATGAGCCTAT 60.142 41.667 0.00 0.00 0.00 2.57
2065 4078 3.193267 GCACCAAACAATTCATGAGCCTA 59.807 43.478 0.00 0.00 0.00 3.93
2066 4079 2.028748 GCACCAAACAATTCATGAGCCT 60.029 45.455 0.00 0.00 0.00 4.58
2067 4080 2.288948 TGCACCAAACAATTCATGAGCC 60.289 45.455 0.00 0.00 0.00 4.70
2068 4081 3.029320 TGCACCAAACAATTCATGAGC 57.971 42.857 0.00 0.00 0.00 4.26
2072 4085 4.571580 CACAAGTTGCACCAAACAATTCAT 59.428 37.500 1.81 0.00 32.21 2.57
2110 4123 6.654582 TGATGTATATTGCGTCCATGCTAATT 59.345 34.615 0.00 0.00 35.36 1.40
2143 4156 9.624697 TTCTCGTCAGGATAATTTGAATTTTTG 57.375 29.630 0.00 0.00 0.00 2.44
2484 6638 5.047092 AGCTATGTTTTGAATCTGGGTTTGG 60.047 40.000 0.00 0.00 0.00 3.28
2543 7005 1.671379 GTGTGAACCGAGCCTTCCC 60.671 63.158 0.00 0.00 0.00 3.97
2573 7087 5.451520 CGAATTTACTACTCCCTCCGTTCAT 60.452 44.000 0.00 0.00 0.00 2.57
2578 7092 3.631227 ACTCGAATTTACTACTCCCTCCG 59.369 47.826 0.00 0.00 0.00 4.63
2618 7132 4.462483 AGTTCCACACACAAACTCAAATGT 59.538 37.500 0.00 0.00 0.00 2.71
2650 7164 8.025445 ACATTACATGAGCTTGAAGAACAAATC 58.975 33.333 0.00 0.00 38.08 2.17
2667 7181 4.782156 TGTTTGCGAGTGAACATTACATG 58.218 39.130 0.00 0.00 31.30 3.21
2757 7297 7.962964 TTACTGTTCAGACTTTAGACAATGG 57.037 36.000 6.83 0.00 0.00 3.16
2804 7344 4.832266 TGCATGTCCAAAAAGTGATTAGGT 59.168 37.500 0.00 0.00 0.00 3.08
2857 7397 3.242518 CTGACATGATGTTGCAAGCTTG 58.757 45.455 22.44 22.44 0.00 4.01
2869 7409 7.341030 TGGTGAAATCTGAATACTGACATGAT 58.659 34.615 0.00 0.00 0.00 2.45
2955 7498 8.025445 GCAGATTCAGACACAGTAAATTTTCAT 58.975 33.333 0.00 0.00 0.00 2.57
2958 7501 6.568462 CGGCAGATTCAGACACAGTAAATTTT 60.568 38.462 0.00 0.00 0.00 1.82
2960 7503 4.393062 CGGCAGATTCAGACACAGTAAATT 59.607 41.667 0.00 0.00 0.00 1.82
2961 7504 3.935203 CGGCAGATTCAGACACAGTAAAT 59.065 43.478 0.00 0.00 0.00 1.40
2962 7505 3.006430 TCGGCAGATTCAGACACAGTAAA 59.994 43.478 0.00 0.00 0.00 2.01
2964 7507 2.167662 TCGGCAGATTCAGACACAGTA 58.832 47.619 0.00 0.00 0.00 2.74
2965 7508 0.969149 TCGGCAGATTCAGACACAGT 59.031 50.000 0.00 0.00 0.00 3.55
2966 7509 2.084610 TTCGGCAGATTCAGACACAG 57.915 50.000 0.00 0.00 0.00 3.66
2970 7513 2.476854 GCAACATTCGGCAGATTCAGAC 60.477 50.000 0.00 0.00 0.00 3.51
3301 8323 3.131396 GTGGTATACCTGATTGCCGAAG 58.869 50.000 22.41 0.00 36.82 3.79
3320 8342 1.659098 GGTAGGCGAGAATTTGACGTG 59.341 52.381 0.00 0.00 0.00 4.49
3701 8764 1.810030 GTCCATGAACTCCGCGTCC 60.810 63.158 4.92 0.00 0.00 4.79
3707 8770 1.207089 TCCGACATGTCCATGAACTCC 59.793 52.381 20.03 0.00 41.20 3.85
3945 9008 1.415659 GATGGAGATGAGGGTGGACAG 59.584 57.143 0.00 0.00 0.00 3.51
4050 9113 4.862018 GCAGTTTGTATGTGTGTTGTGTTT 59.138 37.500 0.00 0.00 0.00 2.83
4059 9122 9.008965 TGTGATTAATTAGCAGTTTGTATGTGT 57.991 29.630 0.00 0.00 0.00 3.72
4078 9141 4.332543 GGCGTGAGACATGAATTGTGATTA 59.667 41.667 0.00 0.00 39.18 1.75
4079 9142 3.127548 GGCGTGAGACATGAATTGTGATT 59.872 43.478 0.00 0.00 39.18 2.57
4080 9143 2.679837 GGCGTGAGACATGAATTGTGAT 59.320 45.455 0.00 0.00 39.18 3.06
4081 9144 2.076100 GGCGTGAGACATGAATTGTGA 58.924 47.619 0.00 0.00 39.18 3.58
4109 9172 2.319011 GATCACCTGCATGCGCACAG 62.319 60.000 14.90 17.17 45.36 3.66
4591 9667 5.635417 TGATCTTCACTCACTAGTCACTG 57.365 43.478 0.00 0.00 31.97 3.66
4639 9715 1.985159 ACAGGATCTAACCAACCAGCA 59.015 47.619 0.00 0.00 0.00 4.41
4640 9716 2.789409 ACAGGATCTAACCAACCAGC 57.211 50.000 0.00 0.00 0.00 4.85
4641 9717 5.046591 TGTCTTACAGGATCTAACCAACCAG 60.047 44.000 0.00 0.00 0.00 4.00
4680 9756 3.560636 ATACAAAGCATTCCGCCTACT 57.439 42.857 0.00 0.00 44.04 2.57
4681 9757 4.378459 GCATATACAAAGCATTCCGCCTAC 60.378 45.833 0.00 0.00 44.04 3.18
4682 9758 3.751175 GCATATACAAAGCATTCCGCCTA 59.249 43.478 0.00 0.00 44.04 3.93
4683 9759 2.554032 GCATATACAAAGCATTCCGCCT 59.446 45.455 0.00 0.00 44.04 5.52
4706 9782 3.694734 ACATAAACATACGCTGCATTGC 58.305 40.909 0.46 0.46 0.00 3.56
4732 9808 8.507249 ACTAAGTTACTACGGTACAAGTTACAG 58.493 37.037 11.48 6.04 29.61 2.74
4733 9809 8.391075 ACTAAGTTACTACGGTACAAGTTACA 57.609 34.615 11.48 0.00 29.61 2.41
4734 9810 9.756461 GTACTAAGTTACTACGGTACAAGTTAC 57.244 37.037 13.36 0.00 33.81 2.50
4735 9811 8.653338 CGTACTAAGTTACTACGGTACAAGTTA 58.347 37.037 16.26 0.00 33.53 2.24
4736 9812 7.172703 ACGTACTAAGTTACTACGGTACAAGTT 59.827 37.037 19.56 0.00 38.04 2.66
4751 9827 9.869844 CGCACTATAAAGTATACGTACTAAGTT 57.130 33.333 0.00 0.00 40.24 2.66
4755 9831 7.658179 AGCGCACTATAAAGTATACGTACTA 57.342 36.000 11.47 0.00 40.24 1.82
4756 9832 6.551385 AGCGCACTATAAAGTATACGTACT 57.449 37.500 11.47 0.00 42.93 2.73
4832 10169 9.029368 TCTATCTGTATCGGATTTTCTCATCAT 57.971 33.333 0.00 0.00 31.33 2.45
4879 10217 0.615331 TTGGTGAGTGCCATCCTCTC 59.385 55.000 0.00 0.00 38.48 3.20
4906 10244 3.665323 CGACTTCTGTTTTTCATGCTCGG 60.665 47.826 0.00 0.00 0.00 4.63
5053 10401 3.618780 GAGCCTCCCAGGTGCACAG 62.619 68.421 20.43 10.43 37.80 3.66
5071 10419 1.445582 GTCGGTAACCTCGGCAGTG 60.446 63.158 0.00 0.00 31.94 3.66
5072 10420 1.904865 TGTCGGTAACCTCGGCAGT 60.905 57.895 0.00 0.00 37.32 4.40
5096 10444 3.786048 GTGCACAGTTTTCGCATATTAGC 59.214 43.478 13.17 0.00 38.07 3.09
5097 10445 4.094887 AGGTGCACAGTTTTCGCATATTAG 59.905 41.667 20.43 0.00 38.07 1.73
5098 10446 4.006989 AGGTGCACAGTTTTCGCATATTA 58.993 39.130 20.43 0.00 38.07 0.98
5099 10447 2.819608 AGGTGCACAGTTTTCGCATATT 59.180 40.909 20.43 0.00 38.07 1.28
5100 10448 2.162208 CAGGTGCACAGTTTTCGCATAT 59.838 45.455 20.43 0.00 38.07 1.78
5101 10449 1.535028 CAGGTGCACAGTTTTCGCATA 59.465 47.619 20.43 0.00 38.07 3.14
5102 10450 0.311790 CAGGTGCACAGTTTTCGCAT 59.688 50.000 20.43 0.00 38.07 4.73
5103 10451 1.723608 CCAGGTGCACAGTTTTCGCA 61.724 55.000 20.43 0.00 0.00 5.10
5104 10452 1.008538 CCAGGTGCACAGTTTTCGC 60.009 57.895 20.43 0.00 0.00 4.70
5105 10453 0.817634 TCCCAGGTGCACAGTTTTCG 60.818 55.000 20.43 0.00 0.00 3.46
5106 10454 0.954452 CTCCCAGGTGCACAGTTTTC 59.046 55.000 20.43 0.00 0.00 2.29
5107 10455 0.468029 CCTCCCAGGTGCACAGTTTT 60.468 55.000 20.43 0.00 0.00 2.43
5108 10456 1.151450 CCTCCCAGGTGCACAGTTT 59.849 57.895 20.43 0.00 0.00 2.66
5109 10457 2.839098 CCTCCCAGGTGCACAGTT 59.161 61.111 20.43 0.00 0.00 3.16
5110 10458 3.958860 GCCTCCCAGGTGCACAGT 61.959 66.667 20.43 1.45 37.80 3.55
5111 10459 3.618780 GAGCCTCCCAGGTGCACAG 62.619 68.421 20.43 10.43 37.80 3.66
5112 10460 3.640407 GAGCCTCCCAGGTGCACA 61.640 66.667 20.43 0.00 37.80 4.57
5113 10461 3.640407 TGAGCCTCCCAGGTGCAC 61.640 66.667 8.80 8.80 37.80 4.57
5114 10462 3.640407 GTGAGCCTCCCAGGTGCA 61.640 66.667 0.00 0.00 37.80 4.57
5115 10463 3.325753 AGTGAGCCTCCCAGGTGC 61.326 66.667 0.00 0.00 37.80 5.01
5116 10464 2.667418 CAGTGAGCCTCCCAGGTG 59.333 66.667 0.00 0.00 37.80 4.00
5117 10465 3.325753 GCAGTGAGCCTCCCAGGT 61.326 66.667 0.00 0.00 37.80 4.00
5126 10474 1.448013 GGTAACCTCGGCAGTGAGC 60.448 63.158 0.00 0.00 44.65 4.26
5127 10475 1.153823 CGGTAACCTCGGCAGTGAG 60.154 63.158 0.00 0.00 35.70 3.51
5128 10476 1.604308 TCGGTAACCTCGGCAGTGA 60.604 57.895 0.00 0.00 0.00 3.41
5129 10477 1.445582 GTCGGTAACCTCGGCAGTG 60.446 63.158 0.00 0.00 31.94 3.66
5130 10478 1.904865 TGTCGGTAACCTCGGCAGT 60.905 57.895 0.00 0.00 37.32 4.40
5131 10479 2.967397 TGTCGGTAACCTCGGCAG 59.033 61.111 0.00 0.00 37.32 4.85
5132 10480 2.642254 CCTGTCGGTAACCTCGGCA 61.642 63.158 0.00 0.00 40.05 5.69
5133 10481 1.880819 TTCCTGTCGGTAACCTCGGC 61.881 60.000 0.00 0.00 0.00 5.54
5134 10482 0.108945 GTTCCTGTCGGTAACCTCGG 60.109 60.000 0.00 0.00 0.00 4.63
5135 10483 0.108945 GGTTCCTGTCGGTAACCTCG 60.109 60.000 0.00 0.00 37.44 4.63
5136 10484 0.971386 TGGTTCCTGTCGGTAACCTC 59.029 55.000 7.60 0.00 39.35 3.85
5137 10485 0.974383 CTGGTTCCTGTCGGTAACCT 59.026 55.000 7.60 0.00 39.35 3.50
5138 10486 0.971386 TCTGGTTCCTGTCGGTAACC 59.029 55.000 0.00 0.00 39.21 2.85
5139 10487 1.337541 GGTCTGGTTCCTGTCGGTAAC 60.338 57.143 0.00 0.00 0.00 2.50
5140 10488 0.971386 GGTCTGGTTCCTGTCGGTAA 59.029 55.000 0.00 0.00 0.00 2.85
5141 10489 0.178955 TGGTCTGGTTCCTGTCGGTA 60.179 55.000 0.00 0.00 0.00 4.02
5142 10490 1.458777 TGGTCTGGTTCCTGTCGGT 60.459 57.895 0.00 0.00 0.00 4.69
5143 10491 1.293498 CTGGTCTGGTTCCTGTCGG 59.707 63.158 0.00 0.00 0.00 4.79
5144 10492 0.038159 GACTGGTCTGGTTCCTGTCG 60.038 60.000 6.31 0.00 41.45 4.35
5145 10493 0.321996 GGACTGGTCTGGTTCCTGTC 59.678 60.000 11.62 11.62 46.18 3.51
5146 10494 0.399949 TGGACTGGTCTGGTTCCTGT 60.400 55.000 0.67 0.00 39.26 4.00
5147 10495 0.764890 TTGGACTGGTCTGGTTCCTG 59.235 55.000 0.67 0.00 0.00 3.86
5148 10496 1.059913 CTTGGACTGGTCTGGTTCCT 58.940 55.000 0.67 0.00 0.00 3.36
5190 10538 5.818857 GTCGATCTACTGTCTTCTCCTAGTT 59.181 44.000 0.00 0.00 0.00 2.24
5197 10545 2.937799 GGTCGTCGATCTACTGTCTTCT 59.062 50.000 0.00 0.00 0.00 2.85
5210 10559 0.745486 TGGATAAGCTCGGTCGTCGA 60.745 55.000 0.00 0.00 46.77 4.20
5211 10560 0.591741 GTGGATAAGCTCGGTCGTCG 60.592 60.000 0.00 0.00 40.90 5.12
5216 10565 1.255667 ACACGGTGGATAAGCTCGGT 61.256 55.000 13.48 0.00 0.00 4.69
5217 10566 0.806102 CACACGGTGGATAAGCTCGG 60.806 60.000 13.48 0.00 0.00 4.63
5219 10568 0.391130 TGCACACGGTGGATAAGCTC 60.391 55.000 13.48 0.00 33.64 4.09
5232 10581 6.252015 GTGATATCATTCACAACAATGCACAC 59.748 38.462 9.02 0.00 44.38 3.82
5287 11812 4.510571 CCTAACACCGTTACAAGCCTAAT 58.489 43.478 0.00 0.00 0.00 1.73
5307 11832 0.326264 AGAAGCGAAGAACATGCCCT 59.674 50.000 0.00 0.00 0.00 5.19
5327 11852 0.737715 ACGCACGAGGATCTTCTTGC 60.738 55.000 21.86 21.86 38.54 4.01
5341 11866 0.944386 TTTCTCTGGCTCAAACGCAC 59.056 50.000 0.00 0.00 0.00 5.34
5415 11940 2.126580 CTTGCGCCTCTGCTTTGC 60.127 61.111 4.18 0.00 35.36 3.68
5438 11963 2.600470 GGGTTTGCTGGGTCACCC 60.600 66.667 5.63 5.63 45.71 4.61
5439 11964 2.600470 GGGGTTTGCTGGGTCACC 60.600 66.667 0.00 0.00 37.24 4.02
5440 11965 2.764637 ATCGGGGTTTGCTGGGTCAC 62.765 60.000 0.00 0.00 0.00 3.67
5441 11966 2.478335 GATCGGGGTTTGCTGGGTCA 62.478 60.000 0.00 0.00 0.00 4.02
5442 11967 1.749258 GATCGGGGTTTGCTGGGTC 60.749 63.158 0.00 0.00 0.00 4.46
5443 11968 2.198304 GAGATCGGGGTTTGCTGGGT 62.198 60.000 0.00 0.00 0.00 4.51
5444 11969 1.452108 GAGATCGGGGTTTGCTGGG 60.452 63.158 0.00 0.00 0.00 4.45
5445 11970 1.815421 CGAGATCGGGGTTTGCTGG 60.815 63.158 0.00 0.00 35.37 4.85
5446 11971 2.464459 GCGAGATCGGGGTTTGCTG 61.464 63.158 4.18 0.00 40.23 4.41
5447 11972 2.125106 GCGAGATCGGGGTTTGCT 60.125 61.111 4.18 0.00 40.23 3.91
5448 11973 3.202706 GGCGAGATCGGGGTTTGC 61.203 66.667 4.18 0.00 40.23 3.68
5449 11974 2.890474 CGGCGAGATCGGGGTTTG 60.890 66.667 0.00 0.00 40.23 2.93
5450 11975 4.157120 CCGGCGAGATCGGGGTTT 62.157 66.667 9.30 0.00 43.45 3.27
5456 11981 4.271816 CTGGACCCGGCGAGATCG 62.272 72.222 9.30 0.00 43.27 3.69
5457 11982 4.593864 GCTGGACCCGGCGAGATC 62.594 72.222 9.30 2.00 38.65 2.75
5465 11990 4.735132 TTCTTCGCGCTGGACCCG 62.735 66.667 5.56 0.00 0.00 5.28
5466 11991 2.358247 TTTCTTCGCGCTGGACCC 60.358 61.111 5.56 0.00 0.00 4.46
5467 11992 3.028366 GCTTTCTTCGCGCTGGACC 62.028 63.158 5.56 0.00 0.00 4.46
5468 11993 1.960994 GAGCTTTCTTCGCGCTGGAC 61.961 60.000 5.56 0.00 33.47 4.02
5469 11994 1.738099 GAGCTTTCTTCGCGCTGGA 60.738 57.895 5.56 0.00 33.47 3.86
5470 11995 2.781300 GAGCTTTCTTCGCGCTGG 59.219 61.111 5.56 0.00 33.47 4.85
5471 11996 2.375766 ACGAGCTTTCTTCGCGCTG 61.376 57.895 5.56 0.00 33.47 5.18
5472 11997 2.049063 ACGAGCTTTCTTCGCGCT 60.049 55.556 5.56 0.00 36.57 5.92
5473 11998 2.094724 CACGAGCTTTCTTCGCGC 59.905 61.111 0.00 0.00 0.00 6.86
5474 11999 2.094724 GCACGAGCTTTCTTCGCG 59.905 61.111 0.00 0.00 37.91 5.87
5519 12044 0.766131 TGGTAGAAACCTTTGCCCGA 59.234 50.000 0.00 0.00 46.91 5.14
5520 12045 0.879090 GTGGTAGAAACCTTTGCCCG 59.121 55.000 0.00 0.00 46.91 6.13
5523 12048 2.225727 CCTTCGTGGTAGAAACCTTTGC 59.774 50.000 0.00 0.00 46.91 3.68
5525 12050 2.501261 GCCTTCGTGGTAGAAACCTTT 58.499 47.619 0.00 0.00 46.91 3.11
5539 12064 2.706952 TTTCCTTGGTGGGGCCTTCG 62.707 60.000 0.84 0.00 38.35 3.79
5572 12097 0.449388 CTGAGGAATGACTTTGGCGC 59.551 55.000 0.00 0.00 0.00 6.53
5573 12098 1.734465 GACTGAGGAATGACTTTGGCG 59.266 52.381 0.00 0.00 0.00 5.69


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.