Multiple sequence alignment - TraesCS5A01G226200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G226200 chr5A 100.000 4868 0 0 1 4868 442275757 442270890 0.000000e+00 8990.0
1 TraesCS5A01G226200 chr5A 100.000 352 0 0 2107 2458 643362312 643362663 0.000000e+00 651.0
2 TraesCS5A01G226200 chr5A 98.108 370 4 3 2089 2458 705837313 705837679 4.110000e-180 641.0
3 TraesCS5A01G226200 chr5D 94.793 1882 63 13 255 2111 341028684 341026813 0.000000e+00 2900.0
4 TraesCS5A01G226200 chr5D 94.521 1606 75 9 2461 4065 341026818 341025225 0.000000e+00 2466.0
5 TraesCS5A01G226200 chr5D 96.526 806 25 3 4064 4868 432291405 432292208 0.000000e+00 1330.0
6 TraesCS5A01G226200 chr5D 87.097 248 24 6 1 242 341029037 341028792 1.730000e-69 274.0
7 TraesCS5A01G226200 chr5B 93.571 1882 74 16 257 2111 400444681 400442820 0.000000e+00 2761.0
8 TraesCS5A01G226200 chr5B 94.372 1617 62 9 2461 4065 400442825 400441226 0.000000e+00 2455.0
9 TraesCS5A01G226200 chr5B 96.154 806 26 3 4064 4868 432878036 432877235 0.000000e+00 1312.0
10 TraesCS5A01G226200 chr5B 97.264 731 18 1 4064 4792 413608752 413608022 0.000000e+00 1238.0
11 TraesCS5A01G226200 chr5B 100.000 351 0 0 2108 2458 120536136 120536486 0.000000e+00 649.0
12 TraesCS5A01G226200 chr5B 87.190 242 16 3 1 242 400445017 400444791 1.340000e-65 261.0
13 TraesCS5A01G226200 chr2D 97.764 805 11 1 4064 4868 630271601 630270804 0.000000e+00 1380.0
14 TraesCS5A01G226200 chr3B 97.516 805 20 0 4064 4868 201559459 201560263 0.000000e+00 1376.0
15 TraesCS5A01G226200 chr3A 97.143 805 21 2 4064 4868 672877119 672877921 0.000000e+00 1358.0
16 TraesCS5A01G226200 chr1B 97.022 806 21 3 4064 4868 633727551 633728354 0.000000e+00 1352.0
17 TraesCS5A01G226200 chr4D 96.273 805 28 2 4064 4868 245649996 245649194 0.000000e+00 1319.0
18 TraesCS5A01G226200 chr4A 95.280 805 38 0 4064 4868 310763721 310762917 0.000000e+00 1277.0
19 TraesCS5A01G226200 chr4A 80.412 97 18 1 524 619 80854101 80854005 6.760000e-09 73.1
20 TraesCS5A01G226200 chr1A 93.939 495 26 4 4376 4868 371832414 371831922 0.000000e+00 745.0
21 TraesCS5A01G226200 chr1A 99.718 354 1 0 2105 2458 7343547 7343194 0.000000e+00 649.0
22 TraesCS5A01G226200 chr2A 100.000 352 0 0 2107 2458 602799679 602799328 0.000000e+00 651.0
23 TraesCS5A01G226200 chr2A 100.000 351 0 0 2108 2458 412916439 412916789 0.000000e+00 649.0
24 TraesCS5A01G226200 chr6A 100.000 351 0 0 2108 2458 146531190 146531540 0.000000e+00 649.0
25 TraesCS5A01G226200 chr3D 99.718 355 0 1 2105 2458 609956831 609957185 0.000000e+00 649.0
26 TraesCS5A01G226200 chr7B 99.440 357 1 1 2103 2458 700817528 700817172 0.000000e+00 647.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G226200 chr5A 442270890 442275757 4867 True 8990.000000 8990 100.000 1 4868 1 chr5A.!!$R1 4867
1 TraesCS5A01G226200 chr5D 341025225 341029037 3812 True 1880.000000 2900 92.137 1 4065 3 chr5D.!!$R1 4064
2 TraesCS5A01G226200 chr5D 432291405 432292208 803 False 1330.000000 1330 96.526 4064 4868 1 chr5D.!!$F1 804
3 TraesCS5A01G226200 chr5B 400441226 400445017 3791 True 1825.666667 2761 91.711 1 4065 3 chr5B.!!$R3 4064
4 TraesCS5A01G226200 chr5B 432877235 432878036 801 True 1312.000000 1312 96.154 4064 4868 1 chr5B.!!$R2 804
5 TraesCS5A01G226200 chr5B 413608022 413608752 730 True 1238.000000 1238 97.264 4064 4792 1 chr5B.!!$R1 728
6 TraesCS5A01G226200 chr2D 630270804 630271601 797 True 1380.000000 1380 97.764 4064 4868 1 chr2D.!!$R1 804
7 TraesCS5A01G226200 chr3B 201559459 201560263 804 False 1376.000000 1376 97.516 4064 4868 1 chr3B.!!$F1 804
8 TraesCS5A01G226200 chr3A 672877119 672877921 802 False 1358.000000 1358 97.143 4064 4868 1 chr3A.!!$F1 804
9 TraesCS5A01G226200 chr1B 633727551 633728354 803 False 1352.000000 1352 97.022 4064 4868 1 chr1B.!!$F1 804
10 TraesCS5A01G226200 chr4D 245649194 245649996 802 True 1319.000000 1319 96.273 4064 4868 1 chr4D.!!$R1 804
11 TraesCS5A01G226200 chr4A 310762917 310763721 804 True 1277.000000 1277 95.280 4064 4868 1 chr4A.!!$R2 804

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
997 1097 0.318762 GACTCCTTTCCGCTCAGTGT 59.681 55.0 0.0 0.0 0.00 3.55 F
2221 2346 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.0 0.0 0.0 38.20 3.49 F
2353 2478 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.0 0.0 0.0 37.78 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2334 2459 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.0 2.67 R
3783 3910 0.322906 CTCTCTTCTGGGGTTTGGGC 60.323 60.000 0.00 0.00 0.0 5.36 R
3975 4112 1.062148 CAGCTGACAACATGATCGCAG 59.938 52.381 8.42 2.93 0.0 5.18 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
140 142 1.244019 AAGAATGGCGAGGTTGGTGC 61.244 55.000 0.00 0.00 0.00 5.01
144 146 4.740822 GGCGAGGTTGGTGCCCAT 62.741 66.667 0.00 0.00 43.06 4.00
145 147 2.676471 GCGAGGTTGGTGCCCATT 60.676 61.111 0.00 0.00 31.53 3.16
147 149 1.883021 CGAGGTTGGTGCCCATTTC 59.117 57.895 0.00 0.00 31.53 2.17
148 150 1.595093 CGAGGTTGGTGCCCATTTCC 61.595 60.000 0.00 0.20 31.53 3.13
149 151 1.229177 AGGTTGGTGCCCATTTCCC 60.229 57.895 0.00 0.00 31.53 3.97
150 152 1.535202 GGTTGGTGCCCATTTCCCA 60.535 57.895 0.00 0.00 31.53 4.37
154 156 1.384191 GGTGCCCATTTCCCAGACT 59.616 57.895 0.00 0.00 0.00 3.24
186 191 7.064060 ACATCTTTGTTCAACAAAAAGCTTG 57.936 32.000 16.40 11.35 46.15 4.01
212 217 6.704289 ATGGTTTGTTCCATACAGATCATG 57.296 37.500 0.00 0.00 45.17 3.07
218 223 3.111853 TCCATACAGATCATGAACGCC 57.888 47.619 0.00 0.00 0.00 5.68
235 240 3.670625 ACGCCTAACTGTATTTCTGCAA 58.329 40.909 0.00 0.00 0.00 4.08
242 247 7.857885 GCCTAACTGTATTTCTGCAATTATCAC 59.142 37.037 0.00 0.00 0.00 3.06
246 346 7.978982 ACTGTATTTCTGCAATTATCACTGTC 58.021 34.615 0.00 0.00 0.00 3.51
249 349 9.665719 TGTATTTCTGCAATTATCACTGTCTTA 57.334 29.630 0.00 0.00 0.00 2.10
253 353 7.364522 TCTGCAATTATCACTGTCTTAACAC 57.635 36.000 0.00 0.00 0.00 3.32
262 362 6.726490 TCACTGTCTTAACACCTTACTCTT 57.274 37.500 0.00 0.00 0.00 2.85
264 364 8.241497 TCACTGTCTTAACACCTTACTCTTAA 57.759 34.615 0.00 0.00 0.00 1.85
265 365 8.139989 TCACTGTCTTAACACCTTACTCTTAAC 58.860 37.037 0.00 0.00 0.00 2.01
266 366 7.924412 CACTGTCTTAACACCTTACTCTTAACA 59.076 37.037 0.00 0.00 0.00 2.41
268 368 7.212274 TGTCTTAACACCTTACTCTTAACACC 58.788 38.462 0.00 0.00 0.00 4.16
270 370 7.930325 GTCTTAACACCTTACTCTTAACACCTT 59.070 37.037 0.00 0.00 0.00 3.50
275 375 8.442632 ACACCTTACTCTTAACACCTTAAAAC 57.557 34.615 0.00 0.00 0.00 2.43
362 462 2.529151 CCATCTTCGCCAAAATTTCCG 58.471 47.619 0.00 0.00 0.00 4.30
532 632 7.502561 GCCATGTATAGTCTTTGTATTTTCCCT 59.497 37.037 0.00 0.00 0.00 4.20
775 875 2.868662 CTCTCGATCGAAGCTTCACAA 58.131 47.619 25.47 11.04 0.00 3.33
787 887 1.806623 GCTTCACAACGCGATATCCCT 60.807 52.381 15.93 0.00 0.00 4.20
814 914 3.804325 GGATCGCAATCTTTCAGATTCGA 59.196 43.478 16.32 16.32 42.67 3.71
997 1097 0.318762 GACTCCTTTCCGCTCAGTGT 59.681 55.000 0.00 0.00 0.00 3.55
1121 1221 5.814188 GCATTCATTTCTTTTCCATCTTCCC 59.186 40.000 0.00 0.00 0.00 3.97
1137 1237 0.400213 TCCCTTTGAGCACATCGGTT 59.600 50.000 0.00 0.00 0.00 4.44
1138 1238 0.523072 CCCTTTGAGCACATCGGTTG 59.477 55.000 0.00 0.00 0.00 3.77
1153 1253 3.934068 TCGGTTGTATCTTGGGTTTCTC 58.066 45.455 0.00 0.00 0.00 2.87
1305 1407 2.644992 CCAACCGCAGCAGGAAAC 59.355 61.111 9.87 0.00 34.73 2.78
1372 1474 3.129287 CACCAAAAGAGTCTGCTTGTGTT 59.871 43.478 12.11 0.00 32.35 3.32
1512 1614 9.412460 TGATTTCAGAATAATCAATACAGCCTT 57.588 29.630 0.00 0.00 38.64 4.35
1650 1772 7.450014 TGAGAGACTGGATGATCTTATAACCTC 59.550 40.741 0.00 0.00 0.00 3.85
1686 1808 5.962433 TGTACTCCCTCTGATCGTAAAAAG 58.038 41.667 0.00 0.00 0.00 2.27
1687 1809 5.479375 TGTACTCCCTCTGATCGTAAAAAGT 59.521 40.000 0.00 0.00 0.00 2.66
1728 1850 7.602644 GGGCGTGTAGATTAATGAATGATAGAA 59.397 37.037 0.00 0.00 0.00 2.10
1729 1851 8.651588 GGCGTGTAGATTAATGAATGATAGAAG 58.348 37.037 0.00 0.00 0.00 2.85
1730 1852 9.411801 GCGTGTAGATTAATGAATGATAGAAGA 57.588 33.333 0.00 0.00 0.00 2.87
1774 1896 5.395214 CCCAAAACTGCCCCTAATTAATCAC 60.395 44.000 0.00 0.00 0.00 3.06
1783 1905 4.319477 CCCCTAATTAATCACGCGTTCATG 60.319 45.833 10.22 0.00 0.00 3.07
1835 1957 3.637911 AGGAACACACAAACTACCACA 57.362 42.857 0.00 0.00 0.00 4.17
1882 2004 5.996644 TGAGATTTAAGGAAAAGGCCGATA 58.003 37.500 0.00 0.00 0.00 2.92
1900 2022 5.881777 CGATAGGATGGAGACGATTAAGA 57.118 43.478 0.00 0.00 0.00 2.10
1919 2041 0.929244 AGGCAATCTTGGTAGGCCAT 59.071 50.000 5.01 0.00 46.96 4.40
1930 2052 1.559682 GGTAGGCCATGGAGAAACAGA 59.440 52.381 18.40 0.00 34.09 3.41
1961 2083 1.120437 GTTCTTGCGTGGAAAAAGCG 58.880 50.000 0.00 0.00 35.83 4.68
1996 2119 9.734984 TCACGGACATAGAGAGTGATATTTATA 57.265 33.333 0.00 0.00 36.98 0.98
2100 2225 4.572389 GGTAATGTGGACATAGCACTGAAG 59.428 45.833 0.00 0.00 35.10 3.02
2113 2238 4.703897 AGCACTGAAGCTAACTTACAACA 58.296 39.130 0.00 0.00 44.50 3.33
2114 2239 5.123227 AGCACTGAAGCTAACTTACAACAA 58.877 37.500 0.00 0.00 44.50 2.83
2115 2240 5.007724 AGCACTGAAGCTAACTTACAACAAC 59.992 40.000 0.00 0.00 44.50 3.32
2116 2241 5.220777 GCACTGAAGCTAACTTACAACAACA 60.221 40.000 0.00 0.00 35.82 3.33
2117 2242 6.676943 GCACTGAAGCTAACTTACAACAACAA 60.677 38.462 0.00 0.00 35.82 2.83
2118 2243 6.687105 CACTGAAGCTAACTTACAACAACAAC 59.313 38.462 0.00 0.00 35.82 3.32
2119 2244 6.373216 ACTGAAGCTAACTTACAACAACAACA 59.627 34.615 0.00 0.00 35.82 3.33
2120 2245 7.094549 ACTGAAGCTAACTTACAACAACAACAA 60.095 33.333 0.00 0.00 35.82 2.83
2121 2246 7.024768 TGAAGCTAACTTACAACAACAACAAC 58.975 34.615 0.00 0.00 35.82 3.32
2122 2247 6.503589 AGCTAACTTACAACAACAACAACA 57.496 33.333 0.00 0.00 0.00 3.33
2123 2248 6.915349 AGCTAACTTACAACAACAACAACAA 58.085 32.000 0.00 0.00 0.00 2.83
2124 2249 6.804783 AGCTAACTTACAACAACAACAACAAC 59.195 34.615 0.00 0.00 0.00 3.32
2125 2250 6.583050 GCTAACTTACAACAACAACAACAACA 59.417 34.615 0.00 0.00 0.00 3.33
2126 2251 7.115095 GCTAACTTACAACAACAACAACAACAA 59.885 33.333 0.00 0.00 0.00 2.83
2127 2252 6.757026 ACTTACAACAACAACAACAACAAC 57.243 33.333 0.00 0.00 0.00 3.32
2128 2253 6.273825 ACTTACAACAACAACAACAACAACA 58.726 32.000 0.00 0.00 0.00 3.33
2129 2254 6.757010 ACTTACAACAACAACAACAACAACAA 59.243 30.769 0.00 0.00 0.00 2.83
2130 2255 5.396750 ACAACAACAACAACAACAACAAC 57.603 34.783 0.00 0.00 0.00 3.32
2131 2256 4.870426 ACAACAACAACAACAACAACAACA 59.130 33.333 0.00 0.00 0.00 3.33
2132 2257 5.351465 ACAACAACAACAACAACAACAACAA 59.649 32.000 0.00 0.00 0.00 2.83
2133 2258 6.128282 ACAACAACAACAACAACAACAACAAA 60.128 30.769 0.00 0.00 0.00 2.83
2134 2259 6.042144 ACAACAACAACAACAACAACAAAG 57.958 33.333 0.00 0.00 0.00 2.77
2135 2260 4.723879 ACAACAACAACAACAACAAAGC 57.276 36.364 0.00 0.00 0.00 3.51
2136 2261 3.496507 ACAACAACAACAACAACAAAGCC 59.503 39.130 0.00 0.00 0.00 4.35
2137 2262 3.676291 ACAACAACAACAACAAAGCCT 57.324 38.095 0.00 0.00 0.00 4.58
2138 2263 4.001618 ACAACAACAACAACAAAGCCTT 57.998 36.364 0.00 0.00 0.00 4.35
2139 2264 4.384940 ACAACAACAACAACAAAGCCTTT 58.615 34.783 0.00 0.00 0.00 3.11
2140 2265 5.542779 ACAACAACAACAACAAAGCCTTTA 58.457 33.333 0.00 0.00 0.00 1.85
2141 2266 5.637387 ACAACAACAACAACAAAGCCTTTAG 59.363 36.000 0.00 0.00 0.00 1.85
2142 2267 5.400066 ACAACAACAACAAAGCCTTTAGT 57.600 34.783 0.00 0.00 0.00 2.24
2143 2268 5.407502 ACAACAACAACAAAGCCTTTAGTC 58.592 37.500 0.00 0.00 0.00 2.59
2144 2269 4.649088 ACAACAACAAAGCCTTTAGTCC 57.351 40.909 0.00 0.00 0.00 3.85
2145 2270 3.383505 ACAACAACAAAGCCTTTAGTCCC 59.616 43.478 0.00 0.00 0.00 4.46
2146 2271 3.306472 ACAACAAAGCCTTTAGTCCCA 57.694 42.857 0.00 0.00 0.00 4.37
2147 2272 3.637769 ACAACAAAGCCTTTAGTCCCAA 58.362 40.909 0.00 0.00 0.00 4.12
2148 2273 4.027437 ACAACAAAGCCTTTAGTCCCAAA 58.973 39.130 0.00 0.00 0.00 3.28
2149 2274 4.142026 ACAACAAAGCCTTTAGTCCCAAAC 60.142 41.667 0.00 0.00 0.00 2.93
2150 2275 3.637769 ACAAAGCCTTTAGTCCCAAACA 58.362 40.909 0.00 0.00 0.00 2.83
2151 2276 4.027437 ACAAAGCCTTTAGTCCCAAACAA 58.973 39.130 0.00 0.00 0.00 2.83
2152 2277 4.099419 ACAAAGCCTTTAGTCCCAAACAAG 59.901 41.667 0.00 0.00 0.00 3.16
2153 2278 3.595190 AGCCTTTAGTCCCAAACAAGT 57.405 42.857 0.00 0.00 0.00 3.16
2154 2279 3.910989 AGCCTTTAGTCCCAAACAAGTT 58.089 40.909 0.00 0.00 0.00 2.66
2155 2280 3.636764 AGCCTTTAGTCCCAAACAAGTTG 59.363 43.478 0.00 0.00 36.94 3.16
2164 2289 1.995376 CAAACAAGTTGGGGTAGGCT 58.005 50.000 7.96 0.00 33.18 4.58
2165 2290 3.149005 CAAACAAGTTGGGGTAGGCTA 57.851 47.619 7.96 0.00 33.18 3.93
2166 2291 3.081804 CAAACAAGTTGGGGTAGGCTAG 58.918 50.000 7.96 0.00 33.18 3.42
2167 2292 2.337359 ACAAGTTGGGGTAGGCTAGA 57.663 50.000 7.96 0.00 0.00 2.43
2168 2293 2.188817 ACAAGTTGGGGTAGGCTAGAG 58.811 52.381 7.96 0.00 0.00 2.43
2169 2294 1.486726 CAAGTTGGGGTAGGCTAGAGG 59.513 57.143 0.00 0.00 0.00 3.69
2170 2295 0.717196 AGTTGGGGTAGGCTAGAGGT 59.283 55.000 0.00 0.00 0.00 3.85
2171 2296 0.831307 GTTGGGGTAGGCTAGAGGTG 59.169 60.000 0.00 0.00 0.00 4.00
2172 2297 0.714180 TTGGGGTAGGCTAGAGGTGA 59.286 55.000 0.00 0.00 0.00 4.02
2173 2298 0.714180 TGGGGTAGGCTAGAGGTGAA 59.286 55.000 0.00 0.00 0.00 3.18
2174 2299 1.079825 TGGGGTAGGCTAGAGGTGAAA 59.920 52.381 0.00 0.00 0.00 2.69
2175 2300 1.485480 GGGGTAGGCTAGAGGTGAAAC 59.515 57.143 0.00 0.00 0.00 2.78
2190 2315 3.531538 GTGAAACCCATAAGATCTCGCA 58.468 45.455 0.00 0.00 0.00 5.10
2191 2316 3.938963 GTGAAACCCATAAGATCTCGCAA 59.061 43.478 0.00 0.00 0.00 4.85
2192 2317 3.938963 TGAAACCCATAAGATCTCGCAAC 59.061 43.478 0.00 0.00 0.00 4.17
2193 2318 2.622064 ACCCATAAGATCTCGCAACC 57.378 50.000 0.00 0.00 0.00 3.77
2194 2319 1.837439 ACCCATAAGATCTCGCAACCA 59.163 47.619 0.00 0.00 0.00 3.67
2195 2320 2.238646 ACCCATAAGATCTCGCAACCAA 59.761 45.455 0.00 0.00 0.00 3.67
2196 2321 2.614057 CCCATAAGATCTCGCAACCAAC 59.386 50.000 0.00 0.00 0.00 3.77
2197 2322 3.535561 CCATAAGATCTCGCAACCAACT 58.464 45.455 0.00 0.00 0.00 3.16
2198 2323 3.557595 CCATAAGATCTCGCAACCAACTC 59.442 47.826 0.00 0.00 0.00 3.01
2199 2324 2.839486 AAGATCTCGCAACCAACTCA 57.161 45.000 0.00 0.00 0.00 3.41
2200 2325 3.340814 AAGATCTCGCAACCAACTCAT 57.659 42.857 0.00 0.00 0.00 2.90
2201 2326 2.625737 AGATCTCGCAACCAACTCATG 58.374 47.619 0.00 0.00 0.00 3.07
2209 2334 3.915575 CCAACTCATGGCTCTGGC 58.084 61.111 0.00 0.00 43.80 4.85
2210 2335 1.001764 CCAACTCATGGCTCTGGCA 60.002 57.895 0.00 0.00 43.80 4.92
2211 2336 1.310933 CCAACTCATGGCTCTGGCAC 61.311 60.000 0.00 0.00 43.80 5.01
2212 2337 0.607217 CAACTCATGGCTCTGGCACA 60.607 55.000 0.00 0.00 41.84 4.57
2213 2338 0.330604 AACTCATGGCTCTGGCACAT 59.669 50.000 0.00 0.00 41.84 3.21
2214 2339 0.393944 ACTCATGGCTCTGGCACATG 60.394 55.000 8.97 8.97 41.84 3.21
2215 2340 1.077285 TCATGGCTCTGGCACATGG 60.077 57.895 13.76 0.00 41.84 3.66
2216 2341 1.077285 CATGGCTCTGGCACATGGA 60.077 57.895 7.68 0.00 41.84 3.41
2217 2342 0.467474 CATGGCTCTGGCACATGGAT 60.467 55.000 7.68 0.00 41.84 3.41
2218 2343 1.142936 ATGGCTCTGGCACATGGATA 58.857 50.000 0.00 0.00 41.84 2.59
2219 2344 0.471191 TGGCTCTGGCACATGGATAG 59.529 55.000 0.00 0.00 38.20 2.08
2220 2345 0.888285 GGCTCTGGCACATGGATAGC 60.888 60.000 0.00 0.00 38.20 2.97
2221 2346 0.179037 GCTCTGGCACATGGATAGCA 60.179 55.000 0.00 0.00 38.20 3.49
2222 2347 1.748244 GCTCTGGCACATGGATAGCAA 60.748 52.381 0.00 0.00 38.20 3.91
2223 2348 2.219458 CTCTGGCACATGGATAGCAAG 58.781 52.381 0.00 0.00 38.20 4.01
2224 2349 0.666913 CTGGCACATGGATAGCAAGC 59.333 55.000 0.00 0.00 38.20 4.01
2225 2350 0.256752 TGGCACATGGATAGCAAGCT 59.743 50.000 0.00 0.00 0.00 3.74
2226 2351 1.341285 TGGCACATGGATAGCAAGCTT 60.341 47.619 0.00 0.00 0.00 3.74
2227 2352 1.336125 GGCACATGGATAGCAAGCTTC 59.664 52.381 0.00 0.00 0.00 3.86
2228 2353 1.336125 GCACATGGATAGCAAGCTTCC 59.664 52.381 0.00 7.95 0.00 3.46
2229 2354 2.646930 CACATGGATAGCAAGCTTCCA 58.353 47.619 20.33 20.33 43.37 3.53
2230 2355 2.357009 CACATGGATAGCAAGCTTCCAC 59.643 50.000 20.41 0.00 42.09 4.02
2231 2356 1.600957 CATGGATAGCAAGCTTCCACG 59.399 52.381 20.41 13.24 42.09 4.94
2232 2357 0.744414 TGGATAGCAAGCTTCCACGC 60.744 55.000 16.61 0.00 34.65 5.34
2233 2358 0.744414 GGATAGCAAGCTTCCACGCA 60.744 55.000 8.96 0.00 0.00 5.24
2234 2359 0.375106 GATAGCAAGCTTCCACGCAC 59.625 55.000 8.96 0.00 0.00 5.34
2235 2360 1.026718 ATAGCAAGCTTCCACGCACC 61.027 55.000 8.96 0.00 0.00 5.01
2236 2361 4.043200 GCAAGCTTCCACGCACCC 62.043 66.667 0.00 0.00 0.00 4.61
2237 2362 3.365265 CAAGCTTCCACGCACCCC 61.365 66.667 0.00 0.00 0.00 4.95
2238 2363 3.570212 AAGCTTCCACGCACCCCT 61.570 61.111 0.00 0.00 0.00 4.79
2239 2364 3.850098 AAGCTTCCACGCACCCCTG 62.850 63.158 0.00 0.00 0.00 4.45
2240 2365 4.643387 GCTTCCACGCACCCCTGT 62.643 66.667 0.00 0.00 0.00 4.00
2241 2366 2.358737 CTTCCACGCACCCCTGTC 60.359 66.667 0.00 0.00 0.00 3.51
2242 2367 3.901797 CTTCCACGCACCCCTGTCC 62.902 68.421 0.00 0.00 0.00 4.02
2244 2369 4.033776 CCACGCACCCCTGTCCAT 62.034 66.667 0.00 0.00 0.00 3.41
2245 2370 2.665089 CCACGCACCCCTGTCCATA 61.665 63.158 0.00 0.00 0.00 2.74
2246 2371 1.153369 CACGCACCCCTGTCCATAG 60.153 63.158 0.00 0.00 0.00 2.23
2247 2372 2.203070 CGCACCCCTGTCCATAGC 60.203 66.667 0.00 0.00 0.00 2.97
2248 2373 2.735772 CGCACCCCTGTCCATAGCT 61.736 63.158 0.00 0.00 0.00 3.32
2249 2374 1.399744 CGCACCCCTGTCCATAGCTA 61.400 60.000 0.00 0.00 0.00 3.32
2250 2375 0.394565 GCACCCCTGTCCATAGCTAG 59.605 60.000 0.00 0.00 0.00 3.42
2251 2376 0.394565 CACCCCTGTCCATAGCTAGC 59.605 60.000 6.62 6.62 0.00 3.42
2252 2377 0.266152 ACCCCTGTCCATAGCTAGCT 59.734 55.000 23.12 23.12 0.00 3.32
2253 2378 0.972883 CCCCTGTCCATAGCTAGCTC 59.027 60.000 23.26 7.00 0.00 4.09
2254 2379 1.482177 CCCCTGTCCATAGCTAGCTCT 60.482 57.143 23.26 9.05 0.00 4.09
2255 2380 2.324541 CCCTGTCCATAGCTAGCTCTT 58.675 52.381 23.26 7.47 0.00 2.85
2256 2381 2.703007 CCCTGTCCATAGCTAGCTCTTT 59.297 50.000 23.26 4.57 0.00 2.52
2257 2382 3.494048 CCCTGTCCATAGCTAGCTCTTTG 60.494 52.174 23.26 16.78 0.00 2.77
2258 2383 3.133721 CCTGTCCATAGCTAGCTCTTTGT 59.866 47.826 23.26 0.00 0.00 2.83
2259 2384 4.367450 CTGTCCATAGCTAGCTCTTTGTC 58.633 47.826 23.26 12.44 0.00 3.18
2260 2385 3.181486 TGTCCATAGCTAGCTCTTTGTCG 60.181 47.826 23.26 6.37 0.00 4.35
2261 2386 3.066900 GTCCATAGCTAGCTCTTTGTCGA 59.933 47.826 23.26 8.50 0.00 4.20
2262 2387 3.891977 TCCATAGCTAGCTCTTTGTCGAT 59.108 43.478 23.26 3.19 0.00 3.59
2263 2388 5.048643 GTCCATAGCTAGCTCTTTGTCGATA 60.049 44.000 23.26 0.00 0.00 2.92
2264 2389 5.048643 TCCATAGCTAGCTCTTTGTCGATAC 60.049 44.000 23.26 0.00 0.00 2.24
2265 2390 5.048364 CCATAGCTAGCTCTTTGTCGATACT 60.048 44.000 23.26 0.00 0.00 2.12
2266 2391 4.561735 AGCTAGCTCTTTGTCGATACTC 57.438 45.455 12.68 0.00 0.00 2.59
2267 2392 3.316868 AGCTAGCTCTTTGTCGATACTCC 59.683 47.826 12.68 0.00 0.00 3.85
2268 2393 3.066900 GCTAGCTCTTTGTCGATACTCCA 59.933 47.826 7.70 0.00 0.00 3.86
2269 2394 4.440250 GCTAGCTCTTTGTCGATACTCCAA 60.440 45.833 7.70 0.00 0.00 3.53
2270 2395 4.744795 AGCTCTTTGTCGATACTCCAAT 57.255 40.909 0.00 0.00 0.00 3.16
2271 2396 4.688021 AGCTCTTTGTCGATACTCCAATC 58.312 43.478 0.00 0.00 0.00 2.67
2272 2397 3.804873 GCTCTTTGTCGATACTCCAATCC 59.195 47.826 0.00 0.00 0.00 3.01
2273 2398 4.442192 GCTCTTTGTCGATACTCCAATCCT 60.442 45.833 0.00 0.00 0.00 3.24
2274 2399 5.665459 CTCTTTGTCGATACTCCAATCCTT 58.335 41.667 0.00 0.00 0.00 3.36
2275 2400 5.661458 TCTTTGTCGATACTCCAATCCTTC 58.339 41.667 0.00 0.00 0.00 3.46
2276 2401 5.186992 TCTTTGTCGATACTCCAATCCTTCA 59.813 40.000 0.00 0.00 0.00 3.02
2277 2402 4.655762 TGTCGATACTCCAATCCTTCAG 57.344 45.455 0.00 0.00 0.00 3.02
2278 2403 3.384789 TGTCGATACTCCAATCCTTCAGG 59.615 47.826 0.00 0.00 0.00 3.86
2279 2404 3.385111 GTCGATACTCCAATCCTTCAGGT 59.615 47.826 0.00 0.00 36.34 4.00
2280 2405 3.637229 TCGATACTCCAATCCTTCAGGTC 59.363 47.826 0.00 0.00 36.34 3.85
2281 2406 3.639094 CGATACTCCAATCCTTCAGGTCT 59.361 47.826 0.00 0.00 36.34 3.85
2282 2407 4.261825 CGATACTCCAATCCTTCAGGTCTC 60.262 50.000 0.00 0.00 36.34 3.36
2283 2408 3.197927 ACTCCAATCCTTCAGGTCTCT 57.802 47.619 0.00 0.00 36.34 3.10
2284 2409 3.103742 ACTCCAATCCTTCAGGTCTCTC 58.896 50.000 0.00 0.00 36.34 3.20
2285 2410 3.245948 ACTCCAATCCTTCAGGTCTCTCT 60.246 47.826 0.00 0.00 36.34 3.10
2286 2411 3.774216 CTCCAATCCTTCAGGTCTCTCTT 59.226 47.826 0.00 0.00 36.34 2.85
2287 2412 4.947883 TCCAATCCTTCAGGTCTCTCTTA 58.052 43.478 0.00 0.00 36.34 2.10
2288 2413 5.342017 TCCAATCCTTCAGGTCTCTCTTAA 58.658 41.667 0.00 0.00 36.34 1.85
2289 2414 5.187967 TCCAATCCTTCAGGTCTCTCTTAAC 59.812 44.000 0.00 0.00 36.34 2.01
2290 2415 4.993029 ATCCTTCAGGTCTCTCTTAACG 57.007 45.455 0.00 0.00 36.34 3.18
2291 2416 3.090037 TCCTTCAGGTCTCTCTTAACGG 58.910 50.000 0.00 0.00 36.34 4.44
2292 2417 3.090037 CCTTCAGGTCTCTCTTAACGGA 58.910 50.000 0.00 0.00 0.00 4.69
2293 2418 3.119424 CCTTCAGGTCTCTCTTAACGGAC 60.119 52.174 0.00 0.00 0.00 4.79
2294 2419 3.436577 TCAGGTCTCTCTTAACGGACT 57.563 47.619 0.00 0.00 0.00 3.85
2295 2420 3.345414 TCAGGTCTCTCTTAACGGACTC 58.655 50.000 0.00 0.00 0.00 3.36
2296 2421 2.424246 CAGGTCTCTCTTAACGGACTCC 59.576 54.545 0.00 0.00 0.00 3.85
2297 2422 2.309458 AGGTCTCTCTTAACGGACTCCT 59.691 50.000 0.00 0.00 0.00 3.69
2298 2423 2.684374 GGTCTCTCTTAACGGACTCCTC 59.316 54.545 0.00 0.00 0.00 3.71
2299 2424 2.684374 GTCTCTCTTAACGGACTCCTCC 59.316 54.545 0.00 0.00 0.00 4.30
2300 2425 2.025898 CTCTCTTAACGGACTCCTCCC 58.974 57.143 0.00 0.00 31.93 4.30
2301 2426 1.356738 TCTCTTAACGGACTCCTCCCA 59.643 52.381 0.00 0.00 31.93 4.37
2302 2427 2.024273 TCTCTTAACGGACTCCTCCCAT 60.024 50.000 0.00 0.00 31.93 4.00
2303 2428 2.101582 CTCTTAACGGACTCCTCCCATG 59.898 54.545 0.00 0.00 31.93 3.66
2304 2429 1.831736 CTTAACGGACTCCTCCCATGT 59.168 52.381 0.00 0.00 31.93 3.21
2305 2430 1.481871 TAACGGACTCCTCCCATGTC 58.518 55.000 0.00 0.00 31.93 3.06
2306 2431 0.544357 AACGGACTCCTCCCATGTCA 60.544 55.000 0.00 0.00 31.93 3.58
2307 2432 0.544357 ACGGACTCCTCCCATGTCAA 60.544 55.000 0.00 0.00 31.93 3.18
2308 2433 0.613260 CGGACTCCTCCCATGTCAAA 59.387 55.000 0.00 0.00 31.93 2.69
2309 2434 1.003118 CGGACTCCTCCCATGTCAAAA 59.997 52.381 0.00 0.00 31.93 2.44
2310 2435 2.356125 CGGACTCCTCCCATGTCAAAAT 60.356 50.000 0.00 0.00 31.93 1.82
2311 2436 3.282885 GGACTCCTCCCATGTCAAAATC 58.717 50.000 0.00 0.00 32.84 2.17
2312 2437 2.939103 GACTCCTCCCATGTCAAAATCG 59.061 50.000 0.00 0.00 0.00 3.34
2313 2438 2.292267 CTCCTCCCATGTCAAAATCGG 58.708 52.381 0.00 0.00 0.00 4.18
2314 2439 1.633432 TCCTCCCATGTCAAAATCGGT 59.367 47.619 0.00 0.00 0.00 4.69
2315 2440 2.017049 CCTCCCATGTCAAAATCGGTC 58.983 52.381 0.00 0.00 0.00 4.79
2316 2441 1.665679 CTCCCATGTCAAAATCGGTCG 59.334 52.381 0.00 0.00 0.00 4.79
2317 2442 1.276705 TCCCATGTCAAAATCGGTCGA 59.723 47.619 0.00 0.00 0.00 4.20
2318 2443 1.396996 CCCATGTCAAAATCGGTCGAC 59.603 52.381 7.13 7.13 0.00 4.20
2319 2444 1.396996 CCATGTCAAAATCGGTCGACC 59.603 52.381 25.28 25.28 0.00 4.79
2320 2445 1.396996 CATGTCAAAATCGGTCGACCC 59.603 52.381 28.52 12.33 0.00 4.46
2321 2446 0.320946 TGTCAAAATCGGTCGACCCC 60.321 55.000 28.52 5.39 0.00 4.95
2331 2456 4.377760 TCGACCCCGCCCTCTCTT 62.378 66.667 0.00 0.00 35.37 2.85
2332 2457 4.148825 CGACCCCGCCCTCTCTTG 62.149 72.222 0.00 0.00 0.00 3.02
2333 2458 2.683933 GACCCCGCCCTCTCTTGA 60.684 66.667 0.00 0.00 0.00 3.02
2334 2459 3.003763 ACCCCGCCCTCTCTTGAC 61.004 66.667 0.00 0.00 0.00 3.18
2335 2460 3.003173 CCCCGCCCTCTCTTGACA 61.003 66.667 0.00 0.00 0.00 3.58
2336 2461 2.370445 CCCCGCCCTCTCTTGACAT 61.370 63.158 0.00 0.00 0.00 3.06
2337 2462 1.604378 CCCGCCCTCTCTTGACATT 59.396 57.895 0.00 0.00 0.00 2.71
2338 2463 0.462759 CCCGCCCTCTCTTGACATTC 60.463 60.000 0.00 0.00 0.00 2.67
2339 2464 0.539051 CCGCCCTCTCTTGACATTCT 59.461 55.000 0.00 0.00 0.00 2.40
2340 2465 1.472376 CCGCCCTCTCTTGACATTCTC 60.472 57.143 0.00 0.00 0.00 2.87
2341 2466 1.472376 CGCCCTCTCTTGACATTCTCC 60.472 57.143 0.00 0.00 0.00 3.71
2342 2467 1.472376 GCCCTCTCTTGACATTCTCCG 60.472 57.143 0.00 0.00 0.00 4.63
2343 2468 1.472376 CCCTCTCTTGACATTCTCCGC 60.472 57.143 0.00 0.00 0.00 5.54
2344 2469 1.205655 CCTCTCTTGACATTCTCCGCA 59.794 52.381 0.00 0.00 0.00 5.69
2345 2470 2.266554 CTCTCTTGACATTCTCCGCAC 58.733 52.381 0.00 0.00 0.00 5.34
2346 2471 0.994995 CTCTTGACATTCTCCGCACG 59.005 55.000 0.00 0.00 0.00 5.34
2347 2472 1.014044 TCTTGACATTCTCCGCACGC 61.014 55.000 0.00 0.00 0.00 5.34
2348 2473 1.005037 TTGACATTCTCCGCACGCT 60.005 52.632 0.00 0.00 0.00 5.07
2349 2474 0.602638 TTGACATTCTCCGCACGCTT 60.603 50.000 0.00 0.00 0.00 4.68
2350 2475 0.602638 TGACATTCTCCGCACGCTTT 60.603 50.000 0.00 0.00 0.00 3.51
2351 2476 1.337354 TGACATTCTCCGCACGCTTTA 60.337 47.619 0.00 0.00 0.00 1.85
2352 2477 1.324736 GACATTCTCCGCACGCTTTAG 59.675 52.381 0.00 0.00 0.00 1.85
2353 2478 0.026803 CATTCTCCGCACGCTTTAGC 59.973 55.000 0.00 0.00 37.78 3.09
2354 2479 1.090052 ATTCTCCGCACGCTTTAGCC 61.090 55.000 0.00 0.00 37.91 3.93
2355 2480 3.554692 CTCCGCACGCTTTAGCCG 61.555 66.667 0.00 0.00 37.91 5.52
2356 2481 4.367023 TCCGCACGCTTTAGCCGT 62.367 61.111 0.00 0.00 37.91 5.68
2357 2482 3.849953 CCGCACGCTTTAGCCGTC 61.850 66.667 0.00 0.00 37.91 4.79
2358 2483 3.849953 CGCACGCTTTAGCCGTCC 61.850 66.667 0.00 0.00 37.91 4.79
2359 2484 3.849953 GCACGCTTTAGCCGTCCG 61.850 66.667 0.00 0.00 37.91 4.79
2360 2485 3.849953 CACGCTTTAGCCGTCCGC 61.850 66.667 0.00 0.00 37.91 5.54
2369 2494 3.264897 GCCGTCCGCTATGCACTG 61.265 66.667 0.00 0.00 0.00 3.66
2370 2495 2.586079 CCGTCCGCTATGCACTGG 60.586 66.667 0.00 0.00 0.00 4.00
2371 2496 2.494445 CGTCCGCTATGCACTGGA 59.506 61.111 0.00 0.00 0.00 3.86
2372 2497 1.589993 CGTCCGCTATGCACTGGAG 60.590 63.158 0.00 0.00 0.00 3.86
2373 2498 1.884926 GTCCGCTATGCACTGGAGC 60.885 63.158 0.00 0.00 0.00 4.70
2374 2499 2.060383 TCCGCTATGCACTGGAGCT 61.060 57.895 9.31 0.00 33.91 4.09
2375 2500 1.153289 CCGCTATGCACTGGAGCTT 60.153 57.895 9.31 0.00 33.91 3.74
2376 2501 1.156645 CCGCTATGCACTGGAGCTTC 61.157 60.000 9.31 0.00 33.91 3.86
2377 2502 0.179089 CGCTATGCACTGGAGCTTCT 60.179 55.000 9.31 0.00 33.91 2.85
2378 2503 1.297664 GCTATGCACTGGAGCTTCTG 58.702 55.000 0.00 0.00 33.28 3.02
2379 2504 1.950828 CTATGCACTGGAGCTTCTGG 58.049 55.000 3.68 0.00 34.99 3.86
2380 2505 1.483827 CTATGCACTGGAGCTTCTGGA 59.516 52.381 3.68 0.00 34.99 3.86
2381 2506 0.252479 ATGCACTGGAGCTTCTGGAG 59.748 55.000 3.68 0.00 34.99 3.86
2382 2507 1.078567 GCACTGGAGCTTCTGGAGG 60.079 63.158 3.68 0.00 0.00 4.30
2383 2508 1.078567 CACTGGAGCTTCTGGAGGC 60.079 63.158 3.68 0.00 0.00 4.70
2384 2509 2.297129 ACTGGAGCTTCTGGAGGCC 61.297 63.158 3.68 0.00 33.44 5.19
2385 2510 1.994507 CTGGAGCTTCTGGAGGCCT 60.995 63.158 3.86 3.86 33.44 5.19
2386 2511 2.254737 CTGGAGCTTCTGGAGGCCTG 62.255 65.000 12.00 0.00 33.44 4.85
2387 2512 2.124778 GAGCTTCTGGAGGCCTGC 60.125 66.667 18.95 18.95 33.44 4.85
2388 2513 4.093291 AGCTTCTGGAGGCCTGCG 62.093 66.667 20.39 14.23 33.44 5.18
2390 2515 4.093291 CTTCTGGAGGCCTGCGCT 62.093 66.667 20.39 0.00 34.44 5.92
2391 2516 4.399395 TTCTGGAGGCCTGCGCTG 62.399 66.667 20.39 12.20 34.44 5.18
2393 2518 4.399395 CTGGAGGCCTGCGCTGAA 62.399 66.667 20.39 0.00 34.44 3.02
2394 2519 3.694058 CTGGAGGCCTGCGCTGAAT 62.694 63.158 20.39 0.55 34.44 2.57
2395 2520 2.315781 CTGGAGGCCTGCGCTGAATA 62.316 60.000 20.39 0.00 34.44 1.75
2396 2521 1.072159 GGAGGCCTGCGCTGAATAT 59.928 57.895 12.00 0.00 34.44 1.28
2397 2522 1.233285 GGAGGCCTGCGCTGAATATG 61.233 60.000 12.00 0.00 34.44 1.78
2398 2523 1.849976 GAGGCCTGCGCTGAATATGC 61.850 60.000 12.00 9.73 34.44 3.14
2399 2524 2.641559 GCCTGCGCTGAATATGCC 59.358 61.111 16.65 0.00 0.00 4.40
2400 2525 2.912624 GCCTGCGCTGAATATGCCC 61.913 63.158 16.65 0.00 0.00 5.36
2401 2526 1.526686 CCTGCGCTGAATATGCCCA 60.527 57.895 16.65 0.00 0.00 5.36
2402 2527 1.102809 CCTGCGCTGAATATGCCCAA 61.103 55.000 16.65 0.00 0.00 4.12
2403 2528 0.740149 CTGCGCTGAATATGCCCAAA 59.260 50.000 9.73 0.00 0.00 3.28
2404 2529 0.455410 TGCGCTGAATATGCCCAAAC 59.545 50.000 9.73 0.00 0.00 2.93
2405 2530 0.249031 GCGCTGAATATGCCCAAACC 60.249 55.000 0.00 0.00 0.00 3.27
2406 2531 1.102154 CGCTGAATATGCCCAAACCA 58.898 50.000 0.00 0.00 0.00 3.67
2407 2532 1.682854 CGCTGAATATGCCCAAACCAT 59.317 47.619 0.00 0.00 0.00 3.55
2408 2533 2.287788 CGCTGAATATGCCCAAACCATC 60.288 50.000 0.00 0.00 0.00 3.51
2409 2534 2.961062 GCTGAATATGCCCAAACCATCT 59.039 45.455 0.00 0.00 0.00 2.90
2410 2535 3.005155 GCTGAATATGCCCAAACCATCTC 59.995 47.826 0.00 0.00 0.00 2.75
2411 2536 4.209538 CTGAATATGCCCAAACCATCTCA 58.790 43.478 0.00 0.00 0.00 3.27
2412 2537 4.608269 TGAATATGCCCAAACCATCTCAA 58.392 39.130 0.00 0.00 0.00 3.02
2413 2538 5.022122 TGAATATGCCCAAACCATCTCAAA 58.978 37.500 0.00 0.00 0.00 2.69
2414 2539 5.105392 TGAATATGCCCAAACCATCTCAAAC 60.105 40.000 0.00 0.00 0.00 2.93
2415 2540 0.958091 TGCCCAAACCATCTCAAACG 59.042 50.000 0.00 0.00 0.00 3.60
2416 2541 1.243902 GCCCAAACCATCTCAAACGA 58.756 50.000 0.00 0.00 0.00 3.85
2417 2542 1.818674 GCCCAAACCATCTCAAACGAT 59.181 47.619 0.00 0.00 0.00 3.73
2418 2543 2.415893 GCCCAAACCATCTCAAACGATG 60.416 50.000 0.00 0.00 40.32 3.84
2419 2544 2.819608 CCCAAACCATCTCAAACGATGT 59.180 45.455 0.00 0.00 39.26 3.06
2420 2545 3.255642 CCCAAACCATCTCAAACGATGTT 59.744 43.478 0.00 0.00 39.26 2.71
2421 2546 4.229096 CCAAACCATCTCAAACGATGTTG 58.771 43.478 0.00 0.00 39.26 3.33
2422 2547 4.229096 CAAACCATCTCAAACGATGTTGG 58.771 43.478 0.00 0.70 39.26 3.77
2423 2548 3.417069 ACCATCTCAAACGATGTTGGA 57.583 42.857 0.00 0.00 39.26 3.53
2424 2549 3.074412 ACCATCTCAAACGATGTTGGAC 58.926 45.455 0.00 0.00 39.26 4.02
2425 2550 3.073678 CCATCTCAAACGATGTTGGACA 58.926 45.455 0.00 0.00 39.26 4.02
2426 2551 3.501828 CCATCTCAAACGATGTTGGACAA 59.498 43.478 0.00 0.00 39.26 3.18
2427 2552 4.378770 CCATCTCAAACGATGTTGGACAAG 60.379 45.833 0.00 0.00 39.26 3.16
2428 2553 2.548057 TCTCAAACGATGTTGGACAAGC 59.452 45.455 0.00 0.00 0.00 4.01
2429 2554 2.549754 CTCAAACGATGTTGGACAAGCT 59.450 45.455 0.00 0.00 0.00 3.74
2430 2555 2.948979 TCAAACGATGTTGGACAAGCTT 59.051 40.909 0.00 0.00 0.00 3.74
2431 2556 3.003275 TCAAACGATGTTGGACAAGCTTC 59.997 43.478 0.00 0.00 0.00 3.86
2432 2557 2.550830 ACGATGTTGGACAAGCTTCT 57.449 45.000 0.00 0.00 0.00 2.85
2433 2558 2.417719 ACGATGTTGGACAAGCTTCTC 58.582 47.619 0.00 0.00 0.00 2.87
2434 2559 1.734465 CGATGTTGGACAAGCTTCTCC 59.266 52.381 13.47 13.47 0.00 3.71
2435 2560 2.613977 CGATGTTGGACAAGCTTCTCCT 60.614 50.000 19.96 1.39 0.00 3.69
2436 2561 2.550830 TGTTGGACAAGCTTCTCCTC 57.449 50.000 19.96 13.65 0.00 3.71
2437 2562 1.768275 TGTTGGACAAGCTTCTCCTCA 59.232 47.619 19.96 15.67 0.00 3.86
2438 2563 2.172505 TGTTGGACAAGCTTCTCCTCAA 59.827 45.455 19.96 5.96 0.00 3.02
2439 2564 3.181440 TGTTGGACAAGCTTCTCCTCAAT 60.181 43.478 19.96 0.00 0.00 2.57
2440 2565 3.795688 TGGACAAGCTTCTCCTCAATT 57.204 42.857 19.96 0.00 0.00 2.32
2441 2566 3.415212 TGGACAAGCTTCTCCTCAATTG 58.585 45.455 19.96 0.00 0.00 2.32
2442 2567 2.751806 GGACAAGCTTCTCCTCAATTGG 59.248 50.000 13.12 0.00 0.00 3.16
2443 2568 3.416156 GACAAGCTTCTCCTCAATTGGT 58.584 45.455 5.42 0.00 0.00 3.67
2444 2569 3.152341 ACAAGCTTCTCCTCAATTGGTG 58.848 45.455 5.42 0.00 0.00 4.17
2445 2570 1.831580 AGCTTCTCCTCAATTGGTGC 58.168 50.000 5.42 0.62 0.00 5.01
2446 2571 1.353694 AGCTTCTCCTCAATTGGTGCT 59.646 47.619 5.42 2.81 0.00 4.40
2447 2572 2.573462 AGCTTCTCCTCAATTGGTGCTA 59.427 45.455 5.42 0.00 0.00 3.49
2448 2573 2.680339 GCTTCTCCTCAATTGGTGCTAC 59.320 50.000 5.42 0.00 0.00 3.58
2449 2574 3.274288 CTTCTCCTCAATTGGTGCTACC 58.726 50.000 5.42 0.00 39.22 3.18
2450 2575 1.559682 TCTCCTCAATTGGTGCTACCC 59.440 52.381 5.42 0.00 37.50 3.69
2451 2576 0.623723 TCCTCAATTGGTGCTACCCC 59.376 55.000 5.42 0.00 37.50 4.95
2452 2577 0.331278 CCTCAATTGGTGCTACCCCA 59.669 55.000 5.42 0.00 37.50 4.96
2453 2578 1.272425 CCTCAATTGGTGCTACCCCAA 60.272 52.381 5.42 0.00 45.55 4.12
2454 2579 1.818674 CTCAATTGGTGCTACCCCAAC 59.181 52.381 5.42 0.00 44.36 3.77
2455 2580 1.427368 TCAATTGGTGCTACCCCAACT 59.573 47.619 5.42 0.00 44.36 3.16
2456 2581 1.818674 CAATTGGTGCTACCCCAACTC 59.181 52.381 0.00 0.00 44.36 3.01
2457 2582 1.372501 ATTGGTGCTACCCCAACTCT 58.627 50.000 0.00 0.00 44.36 3.24
2458 2583 0.400213 TTGGTGCTACCCCAACTCTG 59.600 55.000 3.33 0.00 37.50 3.35
2459 2584 1.299976 GGTGCTACCCCAACTCTGG 59.700 63.158 0.00 0.00 43.10 3.86
2460 2585 1.377333 GTGCTACCCCAACTCTGGC 60.377 63.158 0.00 0.00 41.99 4.85
2461 2586 1.538876 TGCTACCCCAACTCTGGCT 60.539 57.895 0.00 0.00 41.99 4.75
2462 2587 1.133809 TGCTACCCCAACTCTGGCTT 61.134 55.000 0.00 0.00 41.99 4.35
2463 2588 0.909623 GCTACCCCAACTCTGGCTTA 59.090 55.000 0.00 0.00 41.99 3.09
2464 2589 1.407025 GCTACCCCAACTCTGGCTTAC 60.407 57.143 0.00 0.00 41.99 2.34
2465 2590 1.906574 CTACCCCAACTCTGGCTTACA 59.093 52.381 0.00 0.00 41.99 2.41
2476 2601 7.220030 CAACTCTGGCTTACATGGATACTAAT 58.780 38.462 0.00 0.00 37.61 1.73
2525 2650 9.573133 CCAGGATTACAAAATTCACAATAACTC 57.427 33.333 0.00 0.00 0.00 3.01
2590 2715 6.859420 AAATTGCCAGTTTAAACCATTGAC 57.141 33.333 14.72 0.44 0.00 3.18
2591 2716 5.806654 ATTGCCAGTTTAAACCATTGACT 57.193 34.783 14.72 0.00 0.00 3.41
2610 2735 9.794685 CATTGACTCGTAATATAGATAGCATGT 57.205 33.333 0.00 0.00 0.00 3.21
2617 2742 9.952188 TCGTAATATAGATAGCATGTAAGCATC 57.048 33.333 0.00 0.00 36.85 3.91
2642 2767 2.097110 TATATCCTTCTGGGCGGTGT 57.903 50.000 0.00 0.00 34.39 4.16
2681 2806 7.552687 TCAGAAAACGATGGTGCTTTATCTTAT 59.447 33.333 0.00 0.00 0.00 1.73
2682 2807 7.852945 CAGAAAACGATGGTGCTTTATCTTATC 59.147 37.037 0.00 0.00 0.00 1.75
2871 2996 8.352201 TGAATGTTCAGTATTTTGGTTCAAGAG 58.648 33.333 0.00 0.00 32.50 2.85
2915 3040 8.755018 CAGTGTTTCAAATAAAATCTTGGACAC 58.245 33.333 11.18 11.18 38.65 3.67
3147 3272 7.698506 AAACTGTAAGCTTTCCTATTAACCC 57.301 36.000 3.20 0.00 37.60 4.11
3156 3281 3.380479 TCCTATTAACCCGCGAATCTG 57.620 47.619 8.23 0.00 0.00 2.90
3307 3433 5.023533 TGGCCATTCTATACTCACTTGAC 57.976 43.478 0.00 0.00 0.00 3.18
3376 3503 2.804527 TGCTGATAATCGAGCTGCATTC 59.195 45.455 1.02 0.00 42.63 2.67
3385 3512 0.381089 GAGCTGCATTCCTGATGTGC 59.619 55.000 1.02 0.00 38.07 4.57
3463 3590 4.463539 TCCAATGCTGATAAACACTGCAAT 59.536 37.500 0.00 0.00 43.08 3.56
3543 3670 9.965824 GTCCATGTTCTTTTGAGAAAATTTCTA 57.034 29.630 8.38 0.00 40.87 2.10
3585 3712 2.424601 AGCTACCACGTCAACGCTAATA 59.575 45.455 1.81 0.00 44.43 0.98
3616 3743 9.209175 ACAACTCTGATGTCTTATGTTTTCTAC 57.791 33.333 0.00 0.00 0.00 2.59
3674 3801 6.869206 TGCTTAAGATGGTAGGTAGAGTTT 57.131 37.500 6.67 0.00 0.00 2.66
3706 3833 7.828223 AGAAATGGGCATATCTGATGTTCTATC 59.172 37.037 0.00 0.00 0.00 2.08
3710 3837 6.183361 TGGGCATATCTGATGTTCTATCAACA 60.183 38.462 0.00 0.00 34.31 3.33
3783 3910 1.802960 GTTGTGGAGTGCATCAGTGAG 59.197 52.381 0.00 0.00 0.00 3.51
3878 4005 5.683743 GTCATGTGAAATAGCTCTAGACGTC 59.316 44.000 7.70 7.70 0.00 4.34
3891 4018 2.680352 ACGTCCTCCATCAGGCGT 60.680 61.111 4.85 4.85 44.95 5.68
3908 4045 3.662153 TGGCGCGACGTCTGTGTA 61.662 61.111 12.10 5.26 30.55 2.90
3919 4056 3.225104 ACGTCTGTGTACCCTCTTGTTA 58.775 45.455 0.00 0.00 0.00 2.41
3945 4082 3.850122 CGATCCATCATAAGAGCGGTA 57.150 47.619 0.00 0.00 38.19 4.02
3950 4087 4.407365 TCCATCATAAGAGCGGTATCTGA 58.593 43.478 0.00 0.00 0.00 3.27
3975 4112 5.707298 TCTTTCTTGAATCCATGACTCAACC 59.293 40.000 0.00 0.00 0.00 3.77
3978 4115 2.715046 TGAATCCATGACTCAACCTGC 58.285 47.619 0.00 0.00 0.00 4.85
3984 4121 2.558378 CATGACTCAACCTGCGATCAT 58.442 47.619 0.00 0.00 0.00 2.45
4029 4166 3.603857 CGGTTAAACTTGTTGCTCTGTCG 60.604 47.826 0.00 0.00 0.00 4.35
4038 4175 0.596600 TTGCTCTGTCGGTCGTGTTC 60.597 55.000 0.00 0.00 0.00 3.18
4048 4185 7.537715 TCTGTCGGTCGTGTTCTAATTTTATA 58.462 34.615 0.00 0.00 0.00 0.98
4049 4186 8.192774 TCTGTCGGTCGTGTTCTAATTTTATAT 58.807 33.333 0.00 0.00 0.00 0.86
4335 4474 4.473559 CCCTAGTAGAAGAACAAATCCCCA 59.526 45.833 0.00 0.00 0.00 4.96
4368 4507 6.566079 AAGAATCTCATGTATTGGTCCAGA 57.434 37.500 0.00 0.00 0.00 3.86
4674 4821 7.759886 TCAGTAATCGTTCTTGAATTCGAAGAT 59.240 33.333 16.13 8.22 35.04 2.40
4860 5008 6.350103 TGTTGGACAGTACTCAACACAATTA 58.650 36.000 19.33 2.32 43.65 1.40
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
37 38 4.655963 TCAAGCAGCCTCTAGAACAAATT 58.344 39.130 0.00 0.00 0.00 1.82
42 43 2.289694 TGGTTCAAGCAGCCTCTAGAAC 60.290 50.000 0.00 0.00 35.77 3.01
51 52 3.923017 ATGTTACTTGGTTCAAGCAGC 57.077 42.857 7.48 0.00 44.43 5.25
140 142 3.739401 AAAGGTAGTCTGGGAAATGGG 57.261 47.619 0.00 0.00 0.00 4.00
141 143 5.566469 TGTAAAAGGTAGTCTGGGAAATGG 58.434 41.667 0.00 0.00 0.00 3.16
142 144 7.112779 AGATGTAAAAGGTAGTCTGGGAAATG 58.887 38.462 0.00 0.00 0.00 2.32
144 146 6.697641 AGATGTAAAAGGTAGTCTGGGAAA 57.302 37.500 0.00 0.00 0.00 3.13
145 147 6.697641 AAGATGTAAAAGGTAGTCTGGGAA 57.302 37.500 0.00 0.00 0.00 3.97
147 149 6.238648 ACAAAGATGTAAAAGGTAGTCTGGG 58.761 40.000 0.00 0.00 38.24 4.45
148 150 7.444183 TGAACAAAGATGTAAAAGGTAGTCTGG 59.556 37.037 0.00 0.00 39.40 3.86
149 151 8.378172 TGAACAAAGATGTAAAAGGTAGTCTG 57.622 34.615 0.00 0.00 39.40 3.51
150 152 8.837389 GTTGAACAAAGATGTAAAAGGTAGTCT 58.163 33.333 0.00 0.00 39.40 3.24
186 191 7.624360 TGATCTGTATGGAACAAACCATTAC 57.376 36.000 5.55 3.82 47.00 1.89
212 217 3.682858 TGCAGAAATACAGTTAGGCGTTC 59.317 43.478 0.00 0.00 0.00 3.95
218 223 9.926751 CAGTGATAATTGCAGAAATACAGTTAG 57.073 33.333 0.00 0.00 0.00 2.34
235 240 9.036980 AGAGTAAGGTGTTAAGACAGTGATAAT 57.963 33.333 5.00 0.00 36.20 1.28
242 247 7.384387 GGTGTTAAGAGTAAGGTGTTAAGACAG 59.616 40.741 5.00 0.00 33.50 3.51
246 346 9.768662 TTAAGGTGTTAAGAGTAAGGTGTTAAG 57.231 33.333 0.00 0.00 0.00 1.85
249 349 8.896744 GTTTTAAGGTGTTAAGAGTAAGGTGTT 58.103 33.333 0.00 0.00 29.71 3.32
250 350 8.270030 AGTTTTAAGGTGTTAAGAGTAAGGTGT 58.730 33.333 0.00 0.00 29.71 4.16
251 351 8.672823 AGTTTTAAGGTGTTAAGAGTAAGGTG 57.327 34.615 0.00 0.00 29.71 4.00
253 353 9.946165 CAAAGTTTTAAGGTGTTAAGAGTAAGG 57.054 33.333 0.00 0.00 29.71 2.69
266 366 9.946165 CGAAAATAGAAGACAAAGTTTTAAGGT 57.054 29.630 0.00 0.00 0.00 3.50
268 368 9.665264 AGCGAAAATAGAAGACAAAGTTTTAAG 57.335 29.630 0.00 0.00 0.00 1.85
270 370 8.617809 ACAGCGAAAATAGAAGACAAAGTTTTA 58.382 29.630 0.00 0.00 0.00 1.52
275 375 7.132213 TCAAACAGCGAAAATAGAAGACAAAG 58.868 34.615 0.00 0.00 0.00 2.77
362 462 3.170360 GCACCTAAGCCAACCCTAC 57.830 57.895 0.00 0.00 0.00 3.18
383 483 7.467811 GCTGTATAAAAGACAGGATCCATTGTG 60.468 40.741 15.82 5.80 43.78 3.33
503 603 7.568199 AAATACAAAGACTATACATGGCCAC 57.432 36.000 8.16 0.00 0.00 5.01
505 605 7.255486 GGGAAAATACAAAGACTATACATGGCC 60.255 40.741 0.00 0.00 0.00 5.36
532 632 3.245087 TGCAGAAAGCCCCTTATACAACA 60.245 43.478 0.00 0.00 44.83 3.33
607 707 1.040646 CCTAGGGCTATGCAACTCGA 58.959 55.000 0.00 0.00 0.00 4.04
775 875 1.338107 TCCAATCAGGGATATCGCGT 58.662 50.000 13.54 0.00 38.24 6.01
825 925 9.639601 TCTGCTCTATTATGGACATTAATTACG 57.360 33.333 0.00 0.00 0.00 3.18
888 988 7.088905 ACATTGTACCGTAAACTGAGTAGAAG 58.911 38.462 0.00 0.00 0.00 2.85
997 1097 0.325272 TACACAGGCGGCACCATAAA 59.675 50.000 13.08 0.00 43.14 1.40
1121 1221 3.935203 AGATACAACCGATGTGCTCAAAG 59.065 43.478 4.34 0.00 43.77 2.77
1137 1237 6.688073 AAGAAGAGAGAAACCCAAGATACA 57.312 37.500 0.00 0.00 0.00 2.29
1138 1238 7.162082 TGAAAGAAGAGAGAAACCCAAGATAC 58.838 38.462 0.00 0.00 0.00 2.24
1305 1407 1.998315 CACTCTCAATGGCGAGTTCAG 59.002 52.381 0.00 0.00 38.37 3.02
1372 1474 1.241165 CTTCACCATTGCTCAGCACA 58.759 50.000 0.00 0.00 38.71 4.57
1508 1610 8.056407 ACTCTTTGTCCATCTTATTTAAAGGC 57.944 34.615 0.00 0.00 0.00 4.35
1548 1670 7.296628 TCTAAATTTTGGCTAACACAACCAT 57.703 32.000 0.00 0.00 32.39 3.55
1603 1725 9.664332 CTCTCATTATATAGGCAGCAATAAGTT 57.336 33.333 0.00 0.00 0.00 2.66
1650 1772 6.376864 CAGAGGGAGTACATATACAGATGAGG 59.623 46.154 0.00 0.00 33.30 3.86
1686 1808 0.172578 GCCCAGAAAATTACGCCCAC 59.827 55.000 0.00 0.00 0.00 4.61
1687 1809 1.309499 CGCCCAGAAAATTACGCCCA 61.309 55.000 0.00 0.00 0.00 5.36
1728 1850 4.324641 GGGAAATAAGAAGGCCAGTTCTCT 60.325 45.833 5.01 0.55 35.65 3.10
1729 1851 3.948473 GGGAAATAAGAAGGCCAGTTCTC 59.052 47.826 5.01 0.00 35.65 2.87
1730 1852 3.309193 GGGGAAATAAGAAGGCCAGTTCT 60.309 47.826 5.01 2.87 38.48 3.01
1731 1853 3.024547 GGGGAAATAAGAAGGCCAGTTC 58.975 50.000 5.01 0.00 0.00 3.01
1732 1854 2.381961 TGGGGAAATAAGAAGGCCAGTT 59.618 45.455 5.01 0.00 0.00 3.16
1774 1896 3.124466 TGTCAATTACTTCCATGAACGCG 59.876 43.478 3.53 3.53 0.00 6.01
1835 1957 7.888021 TCATGTGGTAGTTATTCCAAATCTTGT 59.112 33.333 0.00 0.00 35.38 3.16
1882 2004 2.630580 GCCTCTTAATCGTCTCCATCCT 59.369 50.000 0.00 0.00 0.00 3.24
1900 2022 2.397815 TGGCCTACCAAGATTGCCT 58.602 52.632 3.32 0.00 45.37 4.75
1914 2036 1.680249 GGTCTCTGTTTCTCCATGGCC 60.680 57.143 6.96 0.00 0.00 5.36
1919 2041 2.365617 GTGTCAGGTCTCTGTTTCTCCA 59.634 50.000 0.00 0.00 41.59 3.86
1930 2052 1.539065 CGCAAGAACAGTGTCAGGTCT 60.539 52.381 0.00 0.00 43.02 3.85
1971 2093 9.995957 CTATAAATATCACTCTCTATGTCCGTG 57.004 37.037 0.00 0.00 0.00 4.94
2008 2131 9.289782 ACTTCTCTTAACAATTGAAGCTAATGT 57.710 29.630 13.59 0.00 38.04 2.71
2009 2132 9.552114 CACTTCTCTTAACAATTGAAGCTAATG 57.448 33.333 13.59 0.00 38.04 1.90
2010 2133 9.507329 TCACTTCTCTTAACAATTGAAGCTAAT 57.493 29.630 13.59 0.00 38.04 1.73
2011 2134 8.902540 TCACTTCTCTTAACAATTGAAGCTAA 57.097 30.769 13.59 3.60 38.04 3.09
2013 2136 7.992754 ATCACTTCTCTTAACAATTGAAGCT 57.007 32.000 13.59 0.00 38.04 3.74
2100 2225 6.583050 TGTTGTTGTTGTTGTTGTAAGTTAGC 59.417 34.615 0.00 0.00 0.00 3.09
2111 2236 5.503194 GCTTTGTTGTTGTTGTTGTTGTTGT 60.503 36.000 0.00 0.00 0.00 3.32
2112 2237 4.903016 GCTTTGTTGTTGTTGTTGTTGTTG 59.097 37.500 0.00 0.00 0.00 3.33
2113 2238 4.024472 GGCTTTGTTGTTGTTGTTGTTGTT 60.024 37.500 0.00 0.00 0.00 2.83
2114 2239 3.496507 GGCTTTGTTGTTGTTGTTGTTGT 59.503 39.130 0.00 0.00 0.00 3.32
2115 2240 3.745458 AGGCTTTGTTGTTGTTGTTGTTG 59.255 39.130 0.00 0.00 0.00 3.33
2116 2241 4.001618 AGGCTTTGTTGTTGTTGTTGTT 57.998 36.364 0.00 0.00 0.00 2.83
2117 2242 3.676291 AGGCTTTGTTGTTGTTGTTGT 57.324 38.095 0.00 0.00 0.00 3.32
2118 2243 5.637387 ACTAAAGGCTTTGTTGTTGTTGTTG 59.363 36.000 22.32 0.00 0.00 3.33
2119 2244 5.789521 ACTAAAGGCTTTGTTGTTGTTGTT 58.210 33.333 22.32 0.00 0.00 2.83
2120 2245 5.400066 ACTAAAGGCTTTGTTGTTGTTGT 57.600 34.783 22.32 0.00 0.00 3.32
2121 2246 4.803613 GGACTAAAGGCTTTGTTGTTGTTG 59.196 41.667 22.32 0.00 0.00 3.33
2122 2247 4.142026 GGGACTAAAGGCTTTGTTGTTGTT 60.142 41.667 22.32 0.00 0.00 2.83
2123 2248 3.383505 GGGACTAAAGGCTTTGTTGTTGT 59.616 43.478 22.32 10.58 0.00 3.32
2124 2249 3.383185 TGGGACTAAAGGCTTTGTTGTTG 59.617 43.478 22.32 7.79 0.00 3.33
2125 2250 3.637769 TGGGACTAAAGGCTTTGTTGTT 58.362 40.909 22.32 1.84 0.00 2.83
2126 2251 3.306472 TGGGACTAAAGGCTTTGTTGT 57.694 42.857 22.32 16.69 0.00 3.32
2127 2252 4.142049 TGTTTGGGACTAAAGGCTTTGTTG 60.142 41.667 22.32 13.85 0.00 3.33
2128 2253 4.027437 TGTTTGGGACTAAAGGCTTTGTT 58.973 39.130 22.32 8.73 0.00 2.83
2129 2254 3.637769 TGTTTGGGACTAAAGGCTTTGT 58.362 40.909 22.32 16.86 0.00 2.83
2130 2255 4.099419 ACTTGTTTGGGACTAAAGGCTTTG 59.901 41.667 22.32 13.97 0.00 2.77
2131 2256 4.286707 ACTTGTTTGGGACTAAAGGCTTT 58.713 39.130 17.76 17.76 0.00 3.51
2132 2257 3.910989 ACTTGTTTGGGACTAAAGGCTT 58.089 40.909 0.00 0.00 0.00 4.35
2133 2258 3.595190 ACTTGTTTGGGACTAAAGGCT 57.405 42.857 0.00 0.00 0.00 4.58
2134 2259 3.977427 CAACTTGTTTGGGACTAAAGGC 58.023 45.455 0.00 0.00 0.00 4.35
2145 2270 1.995376 AGCCTACCCCAACTTGTTTG 58.005 50.000 0.00 0.00 34.63 2.93
2146 2271 2.983898 TCTAGCCTACCCCAACTTGTTT 59.016 45.455 0.00 0.00 0.00 2.83
2147 2272 2.572104 CTCTAGCCTACCCCAACTTGTT 59.428 50.000 0.00 0.00 0.00 2.83
2148 2273 2.188817 CTCTAGCCTACCCCAACTTGT 58.811 52.381 0.00 0.00 0.00 3.16
2149 2274 1.486726 CCTCTAGCCTACCCCAACTTG 59.513 57.143 0.00 0.00 0.00 3.16
2150 2275 1.080666 ACCTCTAGCCTACCCCAACTT 59.919 52.381 0.00 0.00 0.00 2.66
2151 2276 0.717196 ACCTCTAGCCTACCCCAACT 59.283 55.000 0.00 0.00 0.00 3.16
2152 2277 0.831307 CACCTCTAGCCTACCCCAAC 59.169 60.000 0.00 0.00 0.00 3.77
2153 2278 0.714180 TCACCTCTAGCCTACCCCAA 59.286 55.000 0.00 0.00 0.00 4.12
2154 2279 0.714180 TTCACCTCTAGCCTACCCCA 59.286 55.000 0.00 0.00 0.00 4.96
2155 2280 1.485480 GTTTCACCTCTAGCCTACCCC 59.515 57.143 0.00 0.00 0.00 4.95
2156 2281 1.485480 GGTTTCACCTCTAGCCTACCC 59.515 57.143 0.00 0.00 34.73 3.69
2157 2282 1.485480 GGGTTTCACCTCTAGCCTACC 59.515 57.143 0.00 0.00 38.64 3.18
2158 2283 2.185387 TGGGTTTCACCTCTAGCCTAC 58.815 52.381 0.00 0.00 38.64 3.18
2159 2284 2.634639 TGGGTTTCACCTCTAGCCTA 57.365 50.000 0.00 0.00 38.64 3.93
2160 2285 1.972588 ATGGGTTTCACCTCTAGCCT 58.027 50.000 0.00 0.00 38.64 4.58
2161 2286 3.454812 TCTTATGGGTTTCACCTCTAGCC 59.545 47.826 0.00 0.00 38.64 3.93
2162 2287 4.755266 TCTTATGGGTTTCACCTCTAGC 57.245 45.455 0.00 0.00 38.64 3.42
2163 2288 6.515862 CGAGATCTTATGGGTTTCACCTCTAG 60.516 46.154 0.00 0.00 38.64 2.43
2164 2289 5.302059 CGAGATCTTATGGGTTTCACCTCTA 59.698 44.000 0.00 0.00 38.64 2.43
2165 2290 4.100189 CGAGATCTTATGGGTTTCACCTCT 59.900 45.833 0.00 0.00 38.64 3.69
2166 2291 4.372656 CGAGATCTTATGGGTTTCACCTC 58.627 47.826 0.00 0.00 38.64 3.85
2167 2292 3.432326 GCGAGATCTTATGGGTTTCACCT 60.432 47.826 0.00 0.00 38.64 4.00
2168 2293 2.872858 GCGAGATCTTATGGGTTTCACC 59.127 50.000 0.00 0.00 37.60 4.02
2169 2294 3.531538 TGCGAGATCTTATGGGTTTCAC 58.468 45.455 0.00 0.00 0.00 3.18
2170 2295 3.904800 TGCGAGATCTTATGGGTTTCA 57.095 42.857 0.00 0.00 0.00 2.69
2171 2296 3.312697 GGTTGCGAGATCTTATGGGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
2172 2297 3.279434 GGTTGCGAGATCTTATGGGTTT 58.721 45.455 0.00 0.00 0.00 3.27
2173 2298 2.238646 TGGTTGCGAGATCTTATGGGTT 59.761 45.455 0.00 0.00 0.00 4.11
2174 2299 1.837439 TGGTTGCGAGATCTTATGGGT 59.163 47.619 0.00 0.00 0.00 4.51
2175 2300 2.614057 GTTGGTTGCGAGATCTTATGGG 59.386 50.000 0.00 0.00 0.00 4.00
2176 2301 3.535561 AGTTGGTTGCGAGATCTTATGG 58.464 45.455 0.00 0.00 0.00 2.74
2177 2302 4.183865 TGAGTTGGTTGCGAGATCTTATG 58.816 43.478 0.00 0.00 0.00 1.90
2178 2303 4.471904 TGAGTTGGTTGCGAGATCTTAT 57.528 40.909 0.00 0.00 0.00 1.73
2179 2304 3.953712 TGAGTTGGTTGCGAGATCTTA 57.046 42.857 0.00 0.00 0.00 2.10
2180 2305 2.839486 TGAGTTGGTTGCGAGATCTT 57.161 45.000 0.00 0.00 0.00 2.40
2181 2306 2.625737 CATGAGTTGGTTGCGAGATCT 58.374 47.619 0.00 0.00 0.00 2.75
2182 2307 1.667724 CCATGAGTTGGTTGCGAGATC 59.332 52.381 0.00 0.00 40.99 2.75
2183 2308 1.742761 CCATGAGTTGGTTGCGAGAT 58.257 50.000 0.00 0.00 40.99 2.75
2184 2309 3.231734 CCATGAGTTGGTTGCGAGA 57.768 52.632 0.00 0.00 40.99 4.04
2193 2318 0.607217 TGTGCCAGAGCCATGAGTTG 60.607 55.000 0.00 0.00 38.69 3.16
2194 2319 0.330604 ATGTGCCAGAGCCATGAGTT 59.669 50.000 0.00 0.00 38.69 3.01
2195 2320 0.393944 CATGTGCCAGAGCCATGAGT 60.394 55.000 0.00 0.00 44.14 3.41
2196 2321 1.101635 CCATGTGCCAGAGCCATGAG 61.102 60.000 14.22 5.17 44.14 2.90
2197 2322 1.077285 CCATGTGCCAGAGCCATGA 60.077 57.895 14.22 0.00 44.14 3.07
2198 2323 0.467474 ATCCATGTGCCAGAGCCATG 60.467 55.000 8.59 8.59 42.54 3.66
2199 2324 1.073444 CTATCCATGTGCCAGAGCCAT 59.927 52.381 0.00 0.00 38.69 4.40
2200 2325 0.471191 CTATCCATGTGCCAGAGCCA 59.529 55.000 0.00 0.00 38.69 4.75
2201 2326 0.888285 GCTATCCATGTGCCAGAGCC 60.888 60.000 0.00 0.00 38.69 4.70
2202 2327 0.179037 TGCTATCCATGTGCCAGAGC 60.179 55.000 0.00 0.00 40.48 4.09
2203 2328 2.219458 CTTGCTATCCATGTGCCAGAG 58.781 52.381 0.00 0.00 0.00 3.35
2204 2329 1.748244 GCTTGCTATCCATGTGCCAGA 60.748 52.381 0.00 0.00 0.00 3.86
2205 2330 0.666913 GCTTGCTATCCATGTGCCAG 59.333 55.000 0.00 0.00 0.00 4.85
2206 2331 0.256752 AGCTTGCTATCCATGTGCCA 59.743 50.000 0.00 0.00 0.00 4.92
2207 2332 1.336125 GAAGCTTGCTATCCATGTGCC 59.664 52.381 2.10 0.00 0.00 5.01
2208 2333 1.336125 GGAAGCTTGCTATCCATGTGC 59.664 52.381 11.19 0.00 33.30 4.57
2209 2334 2.357009 GTGGAAGCTTGCTATCCATGTG 59.643 50.000 19.34 0.00 44.55 3.21
2210 2335 2.648059 GTGGAAGCTTGCTATCCATGT 58.352 47.619 19.34 0.00 44.55 3.21
2211 2336 1.600957 CGTGGAAGCTTGCTATCCATG 59.399 52.381 19.34 20.51 44.55 3.66
2212 2337 1.959042 CGTGGAAGCTTGCTATCCAT 58.041 50.000 19.34 0.00 44.55 3.41
2213 2338 0.744414 GCGTGGAAGCTTGCTATCCA 60.744 55.000 19.34 9.80 40.84 3.41
2214 2339 0.744414 TGCGTGGAAGCTTGCTATCC 60.744 55.000 19.34 6.99 38.13 2.59
2215 2340 0.375106 GTGCGTGGAAGCTTGCTATC 59.625 55.000 19.34 8.59 38.13 2.08
2216 2341 1.026718 GGTGCGTGGAAGCTTGCTAT 61.027 55.000 19.34 0.00 38.13 2.97
2217 2342 1.671054 GGTGCGTGGAAGCTTGCTA 60.671 57.895 19.34 2.82 38.13 3.49
2218 2343 2.980233 GGTGCGTGGAAGCTTGCT 60.980 61.111 19.34 0.00 38.13 3.91
2219 2344 4.043200 GGGTGCGTGGAAGCTTGC 62.043 66.667 11.58 11.58 38.13 4.01
2220 2345 3.365265 GGGGTGCGTGGAAGCTTG 61.365 66.667 2.10 0.00 38.13 4.01
2221 2346 3.570212 AGGGGTGCGTGGAAGCTT 61.570 61.111 0.00 0.00 38.13 3.74
2222 2347 4.335647 CAGGGGTGCGTGGAAGCT 62.336 66.667 0.00 0.00 38.13 3.74
2223 2348 4.643387 ACAGGGGTGCGTGGAAGC 62.643 66.667 0.00 0.00 37.71 3.86
2224 2349 2.358737 GACAGGGGTGCGTGGAAG 60.359 66.667 0.00 0.00 0.00 3.46
2225 2350 3.948719 GGACAGGGGTGCGTGGAA 61.949 66.667 0.00 0.00 0.00 3.53
2227 2352 2.593468 CTATGGACAGGGGTGCGTGG 62.593 65.000 0.00 0.00 38.35 4.94
2228 2353 1.153369 CTATGGACAGGGGTGCGTG 60.153 63.158 0.00 0.00 38.35 5.34
2229 2354 3.031417 GCTATGGACAGGGGTGCGT 62.031 63.158 0.00 0.00 38.35 5.24
2230 2355 1.399744 TAGCTATGGACAGGGGTGCG 61.400 60.000 0.00 0.00 38.35 5.34
2231 2356 0.394565 CTAGCTATGGACAGGGGTGC 59.605 60.000 0.00 0.00 35.66 5.01
2232 2357 0.394565 GCTAGCTATGGACAGGGGTG 59.605 60.000 7.70 0.00 0.00 4.61
2233 2358 0.266152 AGCTAGCTATGGACAGGGGT 59.734 55.000 17.69 0.00 0.00 4.95
2234 2359 0.972883 GAGCTAGCTATGGACAGGGG 59.027 60.000 19.38 0.00 0.00 4.79
2235 2360 2.008242 AGAGCTAGCTATGGACAGGG 57.992 55.000 19.38 0.00 0.00 4.45
2236 2361 3.133721 ACAAAGAGCTAGCTATGGACAGG 59.866 47.826 19.38 4.81 0.00 4.00
2237 2362 4.367450 GACAAAGAGCTAGCTATGGACAG 58.633 47.826 19.38 6.25 0.00 3.51
2238 2363 3.181486 CGACAAAGAGCTAGCTATGGACA 60.181 47.826 19.38 0.00 0.00 4.02
2239 2364 3.066900 TCGACAAAGAGCTAGCTATGGAC 59.933 47.826 19.38 10.10 0.00 4.02
2240 2365 3.288092 TCGACAAAGAGCTAGCTATGGA 58.712 45.455 19.38 8.12 0.00 3.41
2241 2366 3.717400 TCGACAAAGAGCTAGCTATGG 57.283 47.619 19.38 13.23 0.00 2.74
2242 2367 6.007936 AGTATCGACAAAGAGCTAGCTATG 57.992 41.667 19.38 18.66 0.00 2.23
2243 2368 5.182380 GGAGTATCGACAAAGAGCTAGCTAT 59.818 44.000 19.38 12.73 34.37 2.97
2244 2369 4.515944 GGAGTATCGACAAAGAGCTAGCTA 59.484 45.833 19.38 0.00 34.37 3.32
2245 2370 3.316868 GGAGTATCGACAAAGAGCTAGCT 59.683 47.826 19.45 19.45 34.37 3.32
2246 2371 3.066900 TGGAGTATCGACAAAGAGCTAGC 59.933 47.826 6.62 6.62 34.37 3.42
2247 2372 4.902443 TGGAGTATCGACAAAGAGCTAG 57.098 45.455 0.00 0.00 34.37 3.42
2248 2373 5.221263 GGATTGGAGTATCGACAAAGAGCTA 60.221 44.000 0.00 0.00 34.37 3.32
2249 2374 4.442192 GGATTGGAGTATCGACAAAGAGCT 60.442 45.833 0.00 0.00 34.37 4.09
2250 2375 3.804873 GGATTGGAGTATCGACAAAGAGC 59.195 47.826 0.00 0.00 34.37 4.09
2251 2376 5.269505 AGGATTGGAGTATCGACAAAGAG 57.730 43.478 0.00 0.00 34.37 2.85
2252 2377 5.186992 TGAAGGATTGGAGTATCGACAAAGA 59.813 40.000 0.00 0.00 34.37 2.52
2253 2378 5.419542 TGAAGGATTGGAGTATCGACAAAG 58.580 41.667 0.00 0.00 34.37 2.77
2254 2379 5.414789 TGAAGGATTGGAGTATCGACAAA 57.585 39.130 0.00 0.00 34.37 2.83
2255 2380 4.141937 CCTGAAGGATTGGAGTATCGACAA 60.142 45.833 0.00 0.00 37.39 3.18
2256 2381 3.384789 CCTGAAGGATTGGAGTATCGACA 59.615 47.826 0.00 0.00 37.39 4.35
2257 2382 3.385111 ACCTGAAGGATTGGAGTATCGAC 59.615 47.826 2.62 0.00 38.94 4.20
2258 2383 3.637229 GACCTGAAGGATTGGAGTATCGA 59.363 47.826 2.62 0.00 38.94 3.59
2259 2384 3.639094 AGACCTGAAGGATTGGAGTATCG 59.361 47.826 2.62 0.00 38.94 2.92
2260 2385 4.898861 AGAGACCTGAAGGATTGGAGTATC 59.101 45.833 2.62 0.00 38.94 2.24
2261 2386 4.889780 AGAGACCTGAAGGATTGGAGTAT 58.110 43.478 2.62 0.00 38.94 2.12
2262 2387 4.017037 AGAGAGACCTGAAGGATTGGAGTA 60.017 45.833 2.62 0.00 38.94 2.59
2263 2388 3.103742 GAGAGACCTGAAGGATTGGAGT 58.896 50.000 2.62 0.00 38.94 3.85
2264 2389 3.373830 AGAGAGACCTGAAGGATTGGAG 58.626 50.000 2.62 0.00 38.94 3.86
2265 2390 3.481559 AGAGAGACCTGAAGGATTGGA 57.518 47.619 2.62 0.00 38.94 3.53
2266 2391 5.423886 GTTAAGAGAGACCTGAAGGATTGG 58.576 45.833 2.62 0.00 38.94 3.16
2267 2392 5.105752 CGTTAAGAGAGACCTGAAGGATTG 58.894 45.833 2.62 0.00 38.94 2.67
2268 2393 4.160626 CCGTTAAGAGAGACCTGAAGGATT 59.839 45.833 2.62 0.00 38.94 3.01
2269 2394 3.702045 CCGTTAAGAGAGACCTGAAGGAT 59.298 47.826 2.62 0.00 38.94 3.24
2270 2395 3.090037 CCGTTAAGAGAGACCTGAAGGA 58.910 50.000 2.62 0.00 38.94 3.36
2271 2396 3.090037 TCCGTTAAGAGAGACCTGAAGG 58.910 50.000 0.00 0.00 42.17 3.46
2272 2397 3.759618 AGTCCGTTAAGAGAGACCTGAAG 59.240 47.826 0.00 0.00 0.00 3.02
2273 2398 3.757493 GAGTCCGTTAAGAGAGACCTGAA 59.243 47.826 0.00 0.00 0.00 3.02
2274 2399 3.345414 GAGTCCGTTAAGAGAGACCTGA 58.655 50.000 0.00 0.00 0.00 3.86
2275 2400 2.424246 GGAGTCCGTTAAGAGAGACCTG 59.576 54.545 0.00 0.00 0.00 4.00
2276 2401 2.309458 AGGAGTCCGTTAAGAGAGACCT 59.691 50.000 2.76 0.00 0.00 3.85
2277 2402 2.684374 GAGGAGTCCGTTAAGAGAGACC 59.316 54.545 2.76 0.00 0.00 3.85
2278 2403 2.684374 GGAGGAGTCCGTTAAGAGAGAC 59.316 54.545 2.76 0.00 31.37 3.36
2279 2404 2.356947 GGGAGGAGTCCGTTAAGAGAGA 60.357 54.545 2.76 0.00 45.05 3.10
2280 2405 2.025898 GGGAGGAGTCCGTTAAGAGAG 58.974 57.143 2.76 0.00 45.05 3.20
2281 2406 1.356738 TGGGAGGAGTCCGTTAAGAGA 59.643 52.381 2.76 0.00 45.05 3.10
2282 2407 1.848652 TGGGAGGAGTCCGTTAAGAG 58.151 55.000 2.76 0.00 45.05 2.85
2283 2408 2.108168 CATGGGAGGAGTCCGTTAAGA 58.892 52.381 2.76 0.00 45.05 2.10
2284 2409 1.831736 ACATGGGAGGAGTCCGTTAAG 59.168 52.381 2.76 0.00 45.05 1.85
2285 2410 1.829222 GACATGGGAGGAGTCCGTTAA 59.171 52.381 2.76 0.00 45.05 2.01
2286 2411 1.272816 TGACATGGGAGGAGTCCGTTA 60.273 52.381 2.76 0.00 45.05 3.18
2287 2412 0.544357 TGACATGGGAGGAGTCCGTT 60.544 55.000 2.76 0.00 45.05 4.44
2288 2413 0.544357 TTGACATGGGAGGAGTCCGT 60.544 55.000 2.76 0.00 45.05 4.69
2289 2414 0.613260 TTTGACATGGGAGGAGTCCG 59.387 55.000 2.76 0.00 45.05 4.79
2290 2415 2.879103 TTTTGACATGGGAGGAGTCC 57.121 50.000 0.00 0.00 43.05 3.85
2291 2416 2.939103 CGATTTTGACATGGGAGGAGTC 59.061 50.000 0.00 0.00 0.00 3.36
2292 2417 2.356125 CCGATTTTGACATGGGAGGAGT 60.356 50.000 0.00 0.00 0.00 3.85
2293 2418 2.292267 CCGATTTTGACATGGGAGGAG 58.708 52.381 0.00 0.00 0.00 3.69
2294 2419 1.633432 ACCGATTTTGACATGGGAGGA 59.367 47.619 0.00 0.00 0.00 3.71
2295 2420 2.017049 GACCGATTTTGACATGGGAGG 58.983 52.381 0.00 0.00 0.00 4.30
2296 2421 1.665679 CGACCGATTTTGACATGGGAG 59.334 52.381 0.00 0.00 0.00 4.30
2297 2422 1.276705 TCGACCGATTTTGACATGGGA 59.723 47.619 0.00 0.00 0.00 4.37
2298 2423 1.396996 GTCGACCGATTTTGACATGGG 59.603 52.381 3.51 0.00 31.01 4.00
2299 2424 1.396996 GGTCGACCGATTTTGACATGG 59.603 52.381 20.85 0.00 32.13 3.66
2300 2425 1.396996 GGGTCGACCGATTTTGACATG 59.603 52.381 27.68 0.00 36.71 3.21
2301 2426 1.677820 GGGGTCGACCGATTTTGACAT 60.678 52.381 27.68 0.00 41.60 3.06
2302 2427 0.320946 GGGGTCGACCGATTTTGACA 60.321 55.000 27.68 0.00 41.60 3.58
2303 2428 2.463592 GGGGTCGACCGATTTTGAC 58.536 57.895 27.68 11.35 41.60 3.18
2314 2439 4.377760 AAGAGAGGGCGGGGTCGA 62.378 66.667 0.00 0.00 39.00 4.20
2315 2440 4.148825 CAAGAGAGGGCGGGGTCG 62.149 72.222 0.00 0.00 39.81 4.79
2316 2441 2.683933 TCAAGAGAGGGCGGGGTC 60.684 66.667 0.00 0.00 0.00 4.46
2317 2442 3.003763 GTCAAGAGAGGGCGGGGT 61.004 66.667 0.00 0.00 0.00 4.95
2318 2443 1.915078 AATGTCAAGAGAGGGCGGGG 61.915 60.000 0.00 0.00 0.00 5.73
2319 2444 0.462759 GAATGTCAAGAGAGGGCGGG 60.463 60.000 0.00 0.00 0.00 6.13
2320 2445 0.539051 AGAATGTCAAGAGAGGGCGG 59.461 55.000 0.00 0.00 0.00 6.13
2321 2446 1.472376 GGAGAATGTCAAGAGAGGGCG 60.472 57.143 0.00 0.00 0.00 6.13
2322 2447 1.472376 CGGAGAATGTCAAGAGAGGGC 60.472 57.143 0.00 0.00 0.00 5.19
2323 2448 1.472376 GCGGAGAATGTCAAGAGAGGG 60.472 57.143 0.00 0.00 0.00 4.30
2324 2449 1.205655 TGCGGAGAATGTCAAGAGAGG 59.794 52.381 0.00 0.00 0.00 3.69
2325 2450 2.266554 GTGCGGAGAATGTCAAGAGAG 58.733 52.381 0.00 0.00 0.00 3.20
2326 2451 1.402852 CGTGCGGAGAATGTCAAGAGA 60.403 52.381 0.00 0.00 0.00 3.10
2327 2452 0.994995 CGTGCGGAGAATGTCAAGAG 59.005 55.000 0.00 0.00 0.00 2.85
2328 2453 1.014044 GCGTGCGGAGAATGTCAAGA 61.014 55.000 0.00 0.00 0.00 3.02
2329 2454 1.016130 AGCGTGCGGAGAATGTCAAG 61.016 55.000 0.00 0.00 0.00 3.02
2330 2455 0.602638 AAGCGTGCGGAGAATGTCAA 60.603 50.000 0.00 0.00 0.00 3.18
2331 2456 0.602638 AAAGCGTGCGGAGAATGTCA 60.603 50.000 0.00 0.00 0.00 3.58
2332 2457 1.324736 CTAAAGCGTGCGGAGAATGTC 59.675 52.381 0.00 0.00 0.00 3.06
2333 2458 1.359848 CTAAAGCGTGCGGAGAATGT 58.640 50.000 0.00 0.00 0.00 2.71
2334 2459 0.026803 GCTAAAGCGTGCGGAGAATG 59.973 55.000 0.00 0.00 0.00 2.67
2335 2460 1.090052 GGCTAAAGCGTGCGGAGAAT 61.090 55.000 0.00 0.00 43.26 2.40
2336 2461 1.740296 GGCTAAAGCGTGCGGAGAA 60.740 57.895 0.00 0.00 43.26 2.87
2337 2462 2.125673 GGCTAAAGCGTGCGGAGA 60.126 61.111 0.00 0.00 43.26 3.71
2338 2463 3.554692 CGGCTAAAGCGTGCGGAG 61.555 66.667 0.00 0.00 43.26 4.63
2339 2464 4.367023 ACGGCTAAAGCGTGCGGA 62.367 61.111 0.00 0.00 43.26 5.54
2340 2465 3.849953 GACGGCTAAAGCGTGCGG 61.850 66.667 0.00 0.00 43.26 5.69
2341 2466 3.849953 GGACGGCTAAAGCGTGCG 61.850 66.667 0.00 1.74 43.26 5.34
2342 2467 3.849953 CGGACGGCTAAAGCGTGC 61.850 66.667 0.00 0.00 43.26 5.34
2343 2468 3.849953 GCGGACGGCTAAAGCGTG 61.850 66.667 0.00 0.00 43.26 5.34
2352 2477 3.264897 CAGTGCATAGCGGACGGC 61.265 66.667 0.00 0.00 41.69 5.68
2353 2478 2.586079 CCAGTGCATAGCGGACGG 60.586 66.667 0.00 0.00 41.69 4.79
2354 2479 1.589993 CTCCAGTGCATAGCGGACG 60.590 63.158 0.00 0.00 41.69 4.79
2355 2480 1.884926 GCTCCAGTGCATAGCGGAC 60.885 63.158 0.00 0.00 35.88 4.79
2356 2481 1.617018 AAGCTCCAGTGCATAGCGGA 61.617 55.000 0.00 0.00 41.19 5.54
2357 2482 1.153289 AAGCTCCAGTGCATAGCGG 60.153 57.895 0.00 0.00 41.19 5.52
2358 2483 0.179089 AGAAGCTCCAGTGCATAGCG 60.179 55.000 0.00 0.00 41.19 4.26
2359 2484 1.297664 CAGAAGCTCCAGTGCATAGC 58.702 55.000 0.00 0.00 36.48 2.97
2360 2485 1.483827 TCCAGAAGCTCCAGTGCATAG 59.516 52.381 0.00 0.00 34.99 2.23
2361 2486 1.483827 CTCCAGAAGCTCCAGTGCATA 59.516 52.381 0.00 0.00 34.99 3.14
2362 2487 0.252479 CTCCAGAAGCTCCAGTGCAT 59.748 55.000 0.00 0.00 34.99 3.96
2363 2488 1.675801 CTCCAGAAGCTCCAGTGCA 59.324 57.895 0.00 0.00 34.99 4.57
2364 2489 1.078567 CCTCCAGAAGCTCCAGTGC 60.079 63.158 0.00 0.00 0.00 4.40
2365 2490 1.078567 GCCTCCAGAAGCTCCAGTG 60.079 63.158 0.00 0.00 0.00 3.66
2366 2491 2.297129 GGCCTCCAGAAGCTCCAGT 61.297 63.158 0.00 0.00 0.00 4.00
2367 2492 1.994507 AGGCCTCCAGAAGCTCCAG 60.995 63.158 0.00 0.00 0.00 3.86
2368 2493 2.123632 AGGCCTCCAGAAGCTCCA 59.876 61.111 0.00 0.00 0.00 3.86
2369 2494 2.588989 CAGGCCTCCAGAAGCTCC 59.411 66.667 0.00 0.00 0.00 4.70
2370 2495 2.124778 GCAGGCCTCCAGAAGCTC 60.125 66.667 0.00 0.00 0.00 4.09
2371 2496 4.093291 CGCAGGCCTCCAGAAGCT 62.093 66.667 0.00 0.00 0.00 3.74
2373 2498 4.093291 AGCGCAGGCCTCCAGAAG 62.093 66.667 11.47 0.00 41.24 2.85
2374 2499 4.399395 CAGCGCAGGCCTCCAGAA 62.399 66.667 11.47 0.00 41.24 3.02
2376 2501 2.315781 TATTCAGCGCAGGCCTCCAG 62.316 60.000 11.47 0.00 41.24 3.86
2377 2502 1.699054 ATATTCAGCGCAGGCCTCCA 61.699 55.000 11.47 0.00 41.24 3.86
2378 2503 1.072159 ATATTCAGCGCAGGCCTCC 59.928 57.895 11.47 0.00 41.24 4.30
2379 2504 1.849976 GCATATTCAGCGCAGGCCTC 61.850 60.000 11.47 0.00 41.24 4.70
2380 2505 1.895707 GCATATTCAGCGCAGGCCT 60.896 57.895 11.47 0.00 41.24 5.19
2381 2506 2.641559 GCATATTCAGCGCAGGCC 59.358 61.111 11.47 0.00 41.24 5.19
2382 2507 2.641559 GGCATATTCAGCGCAGGC 59.358 61.111 11.47 0.29 40.37 4.85
2383 2508 3.348236 GGGCATATTCAGCGCAGG 58.652 61.111 11.47 0.20 43.54 4.85
2386 2511 0.249031 GGTTTGGGCATATTCAGCGC 60.249 55.000 0.00 0.00 44.24 5.92
2387 2512 1.102154 TGGTTTGGGCATATTCAGCG 58.898 50.000 0.00 0.00 0.00 5.18
2388 2513 2.961062 AGATGGTTTGGGCATATTCAGC 59.039 45.455 0.00 0.00 0.00 4.26
2389 2514 4.209538 TGAGATGGTTTGGGCATATTCAG 58.790 43.478 0.00 0.00 0.00 3.02
2390 2515 4.248174 TGAGATGGTTTGGGCATATTCA 57.752 40.909 0.00 0.00 0.00 2.57
2391 2516 5.351458 GTTTGAGATGGTTTGGGCATATTC 58.649 41.667 0.00 0.00 0.00 1.75
2392 2517 4.142182 CGTTTGAGATGGTTTGGGCATATT 60.142 41.667 0.00 0.00 0.00 1.28
2393 2518 3.381272 CGTTTGAGATGGTTTGGGCATAT 59.619 43.478 0.00 0.00 0.00 1.78
2394 2519 2.752354 CGTTTGAGATGGTTTGGGCATA 59.248 45.455 0.00 0.00 0.00 3.14
2395 2520 1.545582 CGTTTGAGATGGTTTGGGCAT 59.454 47.619 0.00 0.00 0.00 4.40
2396 2521 0.958091 CGTTTGAGATGGTTTGGGCA 59.042 50.000 0.00 0.00 0.00 5.36
2397 2522 1.243902 TCGTTTGAGATGGTTTGGGC 58.756 50.000 0.00 0.00 0.00 5.36
2398 2523 3.255642 AACATCGTTTGAGATGGTTTGGG 59.744 43.478 11.06 0.00 45.46 4.12
2399 2524 4.229096 CAACATCGTTTGAGATGGTTTGG 58.771 43.478 11.06 0.00 45.46 3.28
2400 2525 4.023279 TCCAACATCGTTTGAGATGGTTTG 60.023 41.667 11.06 7.37 45.46 2.93
2401 2526 4.023193 GTCCAACATCGTTTGAGATGGTTT 60.023 41.667 11.06 0.00 45.46 3.27
2402 2527 3.502211 GTCCAACATCGTTTGAGATGGTT 59.498 43.478 11.06 1.84 45.46 3.67
2406 2531 3.189287 GCTTGTCCAACATCGTTTGAGAT 59.811 43.478 0.00 0.00 0.00 2.75
2407 2532 2.548057 GCTTGTCCAACATCGTTTGAGA 59.452 45.455 0.00 0.00 0.00 3.27
2408 2533 2.549754 AGCTTGTCCAACATCGTTTGAG 59.450 45.455 0.00 0.00 0.00 3.02
2409 2534 2.571212 AGCTTGTCCAACATCGTTTGA 58.429 42.857 0.00 0.00 0.00 2.69
2410 2535 3.003689 AGAAGCTTGTCCAACATCGTTTG 59.996 43.478 2.10 0.00 0.00 2.93
2411 2536 3.214328 AGAAGCTTGTCCAACATCGTTT 58.786 40.909 2.10 0.00 0.00 3.60
2412 2537 2.808543 GAGAAGCTTGTCCAACATCGTT 59.191 45.455 12.50 0.00 0.00 3.85
2413 2538 2.417719 GAGAAGCTTGTCCAACATCGT 58.582 47.619 12.50 0.00 0.00 3.73
2414 2539 1.734465 GGAGAAGCTTGTCCAACATCG 59.266 52.381 32.06 0.00 40.18 3.84
2415 2540 3.006247 GAGGAGAAGCTTGTCCAACATC 58.994 50.000 36.25 24.18 42.72 3.06
2416 2541 2.373169 TGAGGAGAAGCTTGTCCAACAT 59.627 45.455 36.25 20.88 42.72 2.71
2417 2542 1.768275 TGAGGAGAAGCTTGTCCAACA 59.232 47.619 36.25 30.84 42.72 3.33
2418 2543 2.550830 TGAGGAGAAGCTTGTCCAAC 57.449 50.000 36.25 29.11 42.72 3.77
2419 2544 3.795688 ATTGAGGAGAAGCTTGTCCAA 57.204 42.857 36.25 25.72 42.72 3.53
2420 2545 3.415212 CAATTGAGGAGAAGCTTGTCCA 58.585 45.455 36.25 21.34 42.72 4.02
2421 2546 2.751806 CCAATTGAGGAGAAGCTTGTCC 59.248 50.000 30.49 30.49 40.72 4.02
2422 2547 3.190118 CACCAATTGAGGAGAAGCTTGTC 59.810 47.826 15.04 15.04 0.00 3.18
2423 2548 3.152341 CACCAATTGAGGAGAAGCTTGT 58.848 45.455 2.10 0.00 0.00 3.16
2424 2549 2.094854 GCACCAATTGAGGAGAAGCTTG 60.095 50.000 2.10 0.00 0.00 4.01
2425 2550 2.165998 GCACCAATTGAGGAGAAGCTT 58.834 47.619 7.12 0.00 0.00 3.74
2426 2551 1.353694 AGCACCAATTGAGGAGAAGCT 59.646 47.619 7.12 3.13 0.00 3.74
2427 2552 1.831580 AGCACCAATTGAGGAGAAGC 58.168 50.000 7.12 0.92 0.00 3.86
2428 2553 3.274288 GGTAGCACCAATTGAGGAGAAG 58.726 50.000 7.12 0.00 38.42 2.85
2429 2554 2.026262 GGGTAGCACCAATTGAGGAGAA 60.026 50.000 7.12 0.00 41.02 2.87
2430 2555 1.559682 GGGTAGCACCAATTGAGGAGA 59.440 52.381 7.12 0.00 41.02 3.71
2431 2556 1.408822 GGGGTAGCACCAATTGAGGAG 60.409 57.143 7.12 0.00 41.02 3.69
2432 2557 0.623723 GGGGTAGCACCAATTGAGGA 59.376 55.000 7.12 0.00 41.02 3.71
2433 2558 0.331278 TGGGGTAGCACCAATTGAGG 59.669 55.000 7.12 0.00 41.02 3.86
2434 2559 2.214376 TTGGGGTAGCACCAATTGAG 57.786 50.000 7.12 0.00 42.75 3.02
2439 2564 0.400213 CAGAGTTGGGGTAGCACCAA 59.600 55.000 9.86 9.86 45.25 3.67
2440 2565 1.488705 CCAGAGTTGGGGTAGCACCA 61.489 60.000 7.49 0.00 41.02 4.17
2441 2566 1.299976 CCAGAGTTGGGGTAGCACC 59.700 63.158 0.00 0.00 41.05 5.01
2442 2567 1.377333 GCCAGAGTTGGGGTAGCAC 60.377 63.158 0.00 0.00 45.16 4.40
2443 2568 1.133809 AAGCCAGAGTTGGGGTAGCA 61.134 55.000 0.00 0.00 45.16 3.49
2444 2569 0.909623 TAAGCCAGAGTTGGGGTAGC 59.090 55.000 0.00 0.00 45.16 3.58
2445 2570 1.906574 TGTAAGCCAGAGTTGGGGTAG 59.093 52.381 0.00 0.00 45.16 3.18
2446 2571 2.032965 TGTAAGCCAGAGTTGGGGTA 57.967 50.000 0.00 0.00 45.16 3.69
2447 2572 1.004745 CATGTAAGCCAGAGTTGGGGT 59.995 52.381 0.00 0.00 45.16 4.95
2448 2573 1.683011 CCATGTAAGCCAGAGTTGGGG 60.683 57.143 0.00 0.00 45.16 4.96
2449 2574 1.281867 TCCATGTAAGCCAGAGTTGGG 59.718 52.381 0.00 0.00 45.16 4.12
2451 2576 5.028549 AGTATCCATGTAAGCCAGAGTTG 57.971 43.478 0.00 0.00 0.00 3.16
2452 2577 6.808321 TTAGTATCCATGTAAGCCAGAGTT 57.192 37.500 0.00 0.00 0.00 3.01
2453 2578 7.380423 AATTAGTATCCATGTAAGCCAGAGT 57.620 36.000 0.00 0.00 0.00 3.24
2454 2579 8.153550 AGAAATTAGTATCCATGTAAGCCAGAG 58.846 37.037 0.00 0.00 0.00 3.35
2455 2580 8.034313 AGAAATTAGTATCCATGTAAGCCAGA 57.966 34.615 0.00 0.00 0.00 3.86
2456 2581 8.153550 AGAGAAATTAGTATCCATGTAAGCCAG 58.846 37.037 0.00 0.00 0.00 4.85
2457 2582 7.933577 CAGAGAAATTAGTATCCATGTAAGCCA 59.066 37.037 0.00 0.00 0.00 4.75
2458 2583 7.389053 CCAGAGAAATTAGTATCCATGTAAGCC 59.611 40.741 0.00 0.00 0.00 4.35
2459 2584 7.095017 GCCAGAGAAATTAGTATCCATGTAAGC 60.095 40.741 0.00 0.00 0.00 3.09
2460 2585 8.153550 AGCCAGAGAAATTAGTATCCATGTAAG 58.846 37.037 0.00 0.00 0.00 2.34
2461 2586 8.034313 AGCCAGAGAAATTAGTATCCATGTAA 57.966 34.615 0.00 0.00 0.00 2.41
2462 2587 7.618019 AGCCAGAGAAATTAGTATCCATGTA 57.382 36.000 0.00 0.00 0.00 2.29
2463 2588 6.506538 AGCCAGAGAAATTAGTATCCATGT 57.493 37.500 0.00 0.00 0.00 3.21
2464 2589 7.172875 CAGAAGCCAGAGAAATTAGTATCCATG 59.827 40.741 0.00 0.00 0.00 3.66
2465 2590 7.222872 CAGAAGCCAGAGAAATTAGTATCCAT 58.777 38.462 0.00 0.00 0.00 3.41
2476 2601 1.696336 AGACTGCAGAAGCCAGAGAAA 59.304 47.619 23.35 0.00 41.13 2.52
2590 2715 9.958234 ATGCTTACATGCTATCTATATTACGAG 57.042 33.333 0.00 0.00 34.35 4.18
2591 2716 9.952188 GATGCTTACATGCTATCTATATTACGA 57.048 33.333 0.00 0.00 36.35 3.43
2610 2735 8.378565 CCCAGAAGGATATAAAGAAGATGCTTA 58.621 37.037 0.00 0.00 38.24 3.09
2611 2736 7.230027 CCCAGAAGGATATAAAGAAGATGCTT 58.770 38.462 0.00 0.00 38.24 3.91
2617 2742 4.202367 ACCGCCCAGAAGGATATAAAGAAG 60.202 45.833 0.00 0.00 38.24 2.85
2642 2767 7.865385 CCATCGTTTTCTGACCAAAAGATAAAA 59.135 33.333 3.91 0.00 32.61 1.52
2820 2945 9.265901 CAGATCATTAACTTCTTACCTGTATGG 57.734 37.037 0.00 0.00 42.93 2.74
2912 3037 0.038166 ATGCATCCCTTGTTCCGTGT 59.962 50.000 0.00 0.00 0.00 4.49
2915 3040 0.734889 GTGATGCATCCCTTGTTCCG 59.265 55.000 23.67 0.00 0.00 4.30
3174 3300 2.872245 TGCGCCTATATCTGTTGAAAGC 59.128 45.455 4.18 0.00 0.00 3.51
3227 3353 6.442513 GGCTTTGCCTATGATAATATGGAC 57.557 41.667 0.73 0.00 46.69 4.02
3307 3433 4.560035 CAGCACAAAGTGTTCAAAGAACAG 59.440 41.667 12.41 4.46 35.75 3.16
3385 3512 6.215121 TCAATTTTCAAACAGTAGTGCATGG 58.785 36.000 0.00 0.00 0.00 3.66
3463 3590 6.382282 TGTTTATCACCATTCCATTATTGCCA 59.618 34.615 0.00 0.00 0.00 4.92
3557 3684 2.044650 ACGTGGTAGCTAGCCCGA 60.045 61.111 29.79 6.10 0.00 5.14
3616 3743 1.937546 GCATTTTCCACCGCCCAGAG 61.938 60.000 0.00 0.00 0.00 3.35
3674 3801 7.946219 ACATCAGATATGCCCATTTCTATTTCA 59.054 33.333 1.76 0.00 29.87 2.69
3706 3833 1.601162 GCATGTGAACCTGCAGTGTTG 60.601 52.381 20.74 10.84 37.43 3.33
3710 3837 0.956633 CTTGCATGTGAACCTGCAGT 59.043 50.000 13.81 0.00 45.52 4.40
3783 3910 0.322906 CTCTCTTCTGGGGTTTGGGC 60.323 60.000 0.00 0.00 0.00 5.36
3891 4018 3.662153 TACACAGACGTCGCGCCA 61.662 61.111 10.46 0.00 0.00 5.69
3898 4035 1.700955 ACAAGAGGGTACACAGACGT 58.299 50.000 0.00 0.00 0.00 4.34
3919 4056 3.055530 GCTCTTATGATGGATCGGATGGT 60.056 47.826 0.00 0.00 0.00 3.55
3945 4082 7.575505 AGTCATGGATTCAAGAAAGATCAGAT 58.424 34.615 0.00 0.00 0.00 2.90
3950 4087 6.376581 GGTTGAGTCATGGATTCAAGAAAGAT 59.623 38.462 4.66 0.00 38.56 2.40
3975 4112 1.062148 CAGCTGACAACATGATCGCAG 59.938 52.381 8.42 2.93 0.00 5.18
3978 4115 2.286242 GCATCAGCTGACAACATGATCG 60.286 50.000 20.97 0.00 37.91 3.69
4007 4144 3.603857 CGACAGAGCAACAAGTTTAACCG 60.604 47.826 0.00 0.00 0.00 4.44
4009 4146 3.311596 ACCGACAGAGCAACAAGTTTAAC 59.688 43.478 0.00 0.00 0.00 2.01
4012 4149 1.940613 GACCGACAGAGCAACAAGTTT 59.059 47.619 0.00 0.00 0.00 2.66
4029 4166 9.783256 AAAGCAATATAAAATTAGAACACGACC 57.217 29.630 0.00 0.00 0.00 4.79
4048 4185 9.469807 CTCGTTTGTATAGAGATCTAAAGCAAT 57.530 33.333 0.00 0.00 34.13 3.56
4049 4186 8.467598 ACTCGTTTGTATAGAGATCTAAAGCAA 58.532 33.333 0.00 0.00 36.03 3.91
4058 4195 7.392494 TCACTTCACTCGTTTGTATAGAGAT 57.608 36.000 0.00 0.00 36.03 2.75
4238 4377 9.555727 GCTGGGATTAGTTCTTGTTTGTATATA 57.444 33.333 0.00 0.00 0.00 0.86


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.