Multiple sequence alignment - TraesCS5A01G226000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G226000 chr5A 100.000 7531 0 0 1 7531 441919438 441926968 0.000000e+00 13908.0
1 TraesCS5A01G226000 chr5A 82.840 979 116 16 3479 4430 369626366 369627319 0.000000e+00 830.0
2 TraesCS5A01G226000 chr5A 82.365 981 130 24 3478 4430 9843210 9842245 0.000000e+00 813.0
3 TraesCS5A01G226000 chr5D 92.531 3508 167 28 1919 5391 340961752 340965199 0.000000e+00 4939.0
4 TraesCS5A01G226000 chr5D 86.813 1820 117 50 5663 7417 340965283 340967044 0.000000e+00 1917.0
5 TraesCS5A01G226000 chr5D 90.271 812 67 8 1 806 340948204 340949009 0.000000e+00 1051.0
6 TraesCS5A01G226000 chr5D 90.020 491 27 4 1429 1918 340961244 340961713 3.860000e-172 616.0
7 TraesCS5A01G226000 chr5D 95.238 252 5 3 945 1196 340959836 340960080 7.080000e-105 392.0
8 TraesCS5A01G226000 chr5D 88.636 264 19 5 1341 1599 340960506 340960763 2.040000e-80 311.0
9 TraesCS5A01G226000 chr5D 86.667 285 32 4 1630 1910 340960758 340961040 2.040000e-80 311.0
10 TraesCS5A01G226000 chr5D 77.500 160 34 2 698 855 297314913 297315072 2.240000e-15 95.3
11 TraesCS5A01G226000 chr5B 94.362 2288 104 12 1919 4190 400092798 400095076 0.000000e+00 3487.0
12 TraesCS5A01G226000 chr5B 95.234 1091 41 4 4322 5409 400095317 400096399 0.000000e+00 1716.0
13 TraesCS5A01G226000 chr5B 93.010 1073 51 10 5406 6473 400096556 400097609 0.000000e+00 1544.0
14 TraesCS5A01G226000 chr5B 88.215 1171 74 26 787 1918 400091614 400092759 0.000000e+00 1339.0
15 TraesCS5A01G226000 chr5B 85.200 973 117 23 3480 4433 192866767 192865803 0.000000e+00 974.0
16 TraesCS5A01G226000 chr5B 87.617 428 21 10 6523 6948 400097987 400098384 1.140000e-127 468.0
17 TraesCS5A01G226000 chr5B 82.845 478 53 17 6942 7417 400100021 400100471 1.180000e-107 401.0
18 TraesCS5A01G226000 chr5B 78.082 146 27 5 713 855 708334806 708334949 3.740000e-13 87.9
19 TraesCS5A01G226000 chr5B 89.855 69 4 1 7466 7531 400101931 400101999 1.350000e-12 86.1
20 TraesCS5A01G226000 chr5B 95.455 44 2 0 6905 6948 400098437 400098480 3.770000e-08 71.3
21 TraesCS5A01G226000 chr5B 97.143 35 0 1 6474 6508 400097633 400097666 2.940000e-04 58.4
22 TraesCS5A01G226000 chr2A 85.844 989 97 18 3475 4430 515951645 515952623 0.000000e+00 1011.0
23 TraesCS5A01G226000 chr2A 79.952 419 49 14 4034 4429 516825398 516824992 7.440000e-70 276.0
24 TraesCS5A01G226000 chr2A 87.179 78 10 0 576 653 772677443 772677366 1.040000e-13 89.8
25 TraesCS5A01G226000 chr2A 89.552 67 5 2 664 728 47845842 47845908 4.840000e-12 84.2
26 TraesCS5A01G226000 chr2D 85.556 990 100 18 3474 4430 380416530 380417509 0.000000e+00 996.0
27 TraesCS5A01G226000 chr2D 85.020 988 113 21 3468 4430 388833658 388834635 0.000000e+00 972.0
28 TraesCS5A01G226000 chr2D 82.100 419 42 13 4034 4429 382446387 382445979 2.030000e-85 327.0
29 TraesCS5A01G226000 chr2D 74.915 295 42 22 573 840 647812007 647812296 1.030000e-18 106.0
30 TraesCS5A01G226000 chr3A 84.121 995 123 19 3455 4422 375018274 375017288 0.000000e+00 929.0
31 TraesCS5A01G226000 chr7D 83.900 1000 125 20 3455 4427 511568913 511569903 0.000000e+00 922.0
32 TraesCS5A01G226000 chr6B 84.681 940 123 18 3501 4430 684441390 684440462 0.000000e+00 918.0
33 TraesCS5A01G226000 chr6B 86.111 180 20 3 250 426 680782526 680782349 9.980000e-44 189.0
34 TraesCS5A01G226000 chr4B 83.629 1014 125 25 3448 4430 199715586 199714583 0.000000e+00 915.0
35 TraesCS5A01G226000 chr4B 77.037 270 49 11 591 855 386755717 386755456 7.880000e-30 143.0
36 TraesCS5A01G226000 chr4B 88.333 60 6 1 676 734 534714787 534714846 3.770000e-08 71.3
37 TraesCS5A01G226000 chr6D 84.239 939 129 14 3501 4430 450693188 450692260 0.000000e+00 896.0
38 TraesCS5A01G226000 chr6D 94.231 52 3 0 676 727 361223980 361224031 6.260000e-11 80.5
39 TraesCS5A01G226000 chr6A 84.149 940 129 16 3501 4430 596292847 596291918 0.000000e+00 893.0
40 TraesCS5A01G226000 chr6A 92.308 52 4 0 676 727 502334170 502334221 2.910000e-09 75.0
41 TraesCS5A01G226000 chr6A 84.416 77 6 6 356 432 478916089 478916019 3.770000e-08 71.3
42 TraesCS5A01G226000 chr1A 79.098 244 41 10 4708 4944 463809480 463809720 7.820000e-35 159.0
43 TraesCS5A01G226000 chr4D 77.606 259 45 12 591 844 309711061 309710811 2.190000e-30 145.0
44 TraesCS5A01G226000 chrUn 87.611 113 13 1 315 426 262504755 262504867 6.130000e-26 130.0
45 TraesCS5A01G226000 chr4A 74.751 301 57 11 578 864 649426128 649426423 4.770000e-22 117.0
46 TraesCS5A01G226000 chr2B 89.474 76 8 0 576 651 788011183 788011108 6.220000e-16 97.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G226000 chr5A 441919438 441926968 7530 False 13908.000000 13908 100.000000 1 7531 1 chr5A.!!$F2 7530
1 TraesCS5A01G226000 chr5A 369626366 369627319 953 False 830.000000 830 82.840000 3479 4430 1 chr5A.!!$F1 951
2 TraesCS5A01G226000 chr5A 9842245 9843210 965 True 813.000000 813 82.365000 3478 4430 1 chr5A.!!$R1 952
3 TraesCS5A01G226000 chr5D 340959836 340967044 7208 False 1414.333333 4939 89.984167 945 7417 6 chr5D.!!$F3 6472
4 TraesCS5A01G226000 chr5D 340948204 340949009 805 False 1051.000000 1051 90.271000 1 806 1 chr5D.!!$F2 805
5 TraesCS5A01G226000 chr5B 400091614 400101999 10385 False 1018.977778 3487 91.526222 787 7531 9 chr5B.!!$F2 6744
6 TraesCS5A01G226000 chr5B 192865803 192866767 964 True 974.000000 974 85.200000 3480 4433 1 chr5B.!!$R1 953
7 TraesCS5A01G226000 chr2A 515951645 515952623 978 False 1011.000000 1011 85.844000 3475 4430 1 chr2A.!!$F2 955
8 TraesCS5A01G226000 chr2D 380416530 380417509 979 False 996.000000 996 85.556000 3474 4430 1 chr2D.!!$F1 956
9 TraesCS5A01G226000 chr2D 388833658 388834635 977 False 972.000000 972 85.020000 3468 4430 1 chr2D.!!$F2 962
10 TraesCS5A01G226000 chr3A 375017288 375018274 986 True 929.000000 929 84.121000 3455 4422 1 chr3A.!!$R1 967
11 TraesCS5A01G226000 chr7D 511568913 511569903 990 False 922.000000 922 83.900000 3455 4427 1 chr7D.!!$F1 972
12 TraesCS5A01G226000 chr6B 684440462 684441390 928 True 918.000000 918 84.681000 3501 4430 1 chr6B.!!$R2 929
13 TraesCS5A01G226000 chr4B 199714583 199715586 1003 True 915.000000 915 83.629000 3448 4430 1 chr4B.!!$R1 982
14 TraesCS5A01G226000 chr6D 450692260 450693188 928 True 896.000000 896 84.239000 3501 4430 1 chr6D.!!$R1 929
15 TraesCS5A01G226000 chr6A 596291918 596292847 929 True 893.000000 893 84.149000 3501 4430 1 chr6A.!!$R2 929

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
199 201 0.469144 GGCCCTTTTTCACCTGGTCA 60.469 55.000 0.00 0.0 0.00 4.02 F
456 461 1.048601 ACACCGGACACAAGATGAGT 58.951 50.000 9.46 0.0 0.00 3.41 F
1059 1084 0.103937 CGACCTGATGCTTCTCCCTC 59.896 60.000 0.88 0.0 0.00 4.30 F
1261 1286 0.331616 AGCAGGTGAATACAACCCCC 59.668 55.000 0.00 0.0 33.63 5.40 F
1532 1860 0.460459 TGTGGAGTTTTCGTGACGCA 60.460 50.000 0.00 0.0 0.00 5.24 F
2000 3015 0.511221 CGTCGACGCAAGAAATTGGT 59.489 50.000 26.59 0.0 43.62 3.67 F
2820 3838 0.679505 TTGACGTGGAAGAGTCTGGG 59.320 55.000 0.00 0.0 38.16 4.45 F
4006 5057 1.136110 TGTCGCACTCTCTTGTCACAA 59.864 47.619 0.00 0.0 0.00 3.33 F
4157 5211 0.107017 CACCATGGCTAACCTCCCTG 60.107 60.000 13.04 0.0 36.63 4.45 F
4396 5632 0.183492 AAGCTGACCCTTTGTGCAGA 59.817 50.000 0.00 0.0 0.00 4.26 F
6164 7581 1.194547 TGTGAGCAAGCGAAAATCGTC 59.805 47.619 1.45 0.0 42.81 4.20 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1048 1073 0.032615 GAGAGGGAGAGGGAGAAGCA 60.033 60.000 0.00 0.00 0.00 3.91 R
1788 2753 0.037975 ACACTAACCGTAAGCACCCG 60.038 55.000 0.00 0.00 0.00 5.28 R
1941 2945 1.942657 CCGATGACCTAACTGCCAATG 59.057 52.381 0.00 0.00 0.00 2.82 R
3179 4203 2.293399 GGCTCCCTTATTTTATGTGGCG 59.707 50.000 0.00 0.00 0.00 5.69 R
3285 4309 3.140325 TGTGGAATTCCTGAACCTCAC 57.860 47.619 24.73 12.43 36.82 3.51 R
3989 5038 1.528586 CCTTTGTGACAAGAGAGTGCG 59.471 52.381 0.00 0.00 0.00 5.34 R
4143 5197 1.615424 GGGACAGGGAGGTTAGCCA 60.615 63.158 0.00 0.00 37.19 4.75 R
4832 6080 0.183492 TTGCACCTTGGAGCTTGAGT 59.817 50.000 10.18 0.00 0.00 3.41 R
5332 6580 1.603678 GCTACGGTGGTTTCGTTCTCA 60.604 52.381 0.00 0.00 41.38 3.27 R
6284 7701 1.076332 ACATAAGAAACGCGCAGACC 58.924 50.000 5.73 0.00 0.00 3.85 R
7062 10495 0.169672 CATGCAAGTACACAGCAGCC 59.830 55.000 11.57 0.00 42.14 4.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
29 31 1.402720 GCCCCAATGTTGTTGTCATCG 60.403 52.381 0.00 0.00 0.00 3.84
47 49 1.745264 GGAGCTCTCTTCCCCATCG 59.255 63.158 14.64 0.00 0.00 3.84
63 65 3.467803 CCATCGTTCCAAGAAGGTATCC 58.532 50.000 0.00 0.00 39.02 2.59
65 67 3.887621 TCGTTCCAAGAAGGTATCCTG 57.112 47.619 0.00 0.00 39.02 3.86
75 77 2.420568 GGTATCCTGGTCGGCGACA 61.421 63.158 37.13 23.27 33.68 4.35
97 99 1.337541 GGAACTAAGGTGGTCGGTGAC 60.338 57.143 0.00 0.00 0.00 3.67
129 131 1.817099 GGCATGGGAGAACAGAGCG 60.817 63.158 0.00 0.00 0.00 5.03
139 141 1.002274 AACAGAGCGGGGGAGAGAT 59.998 57.895 0.00 0.00 0.00 2.75
140 142 0.618968 AACAGAGCGGGGGAGAGATT 60.619 55.000 0.00 0.00 0.00 2.40
178 180 3.376859 CGAGTGAGAGAGTGAGCTGTATT 59.623 47.826 0.00 0.00 0.00 1.89
182 184 1.484240 AGAGAGTGAGCTGTATTGGGC 59.516 52.381 0.00 0.00 0.00 5.36
197 199 1.152333 GGGCCCTTTTTCACCTGGT 60.152 57.895 17.04 0.00 0.00 4.00
199 201 0.469144 GGCCCTTTTTCACCTGGTCA 60.469 55.000 0.00 0.00 0.00 4.02
213 215 4.070552 GTCAGAACGGCTCGCCCT 62.071 66.667 1.72 0.00 0.00 5.19
230 232 2.813179 CTAACGGCCATGAGCACGC 61.813 63.158 2.24 0.00 46.50 5.34
304 307 4.214758 AGCACGCTTAGATTTTAACCGTTT 59.785 37.500 0.00 0.00 0.00 3.60
345 348 3.192633 GGGATAGCGAACCAATTTTGTGT 59.807 43.478 0.00 0.00 0.00 3.72
351 354 5.656480 AGCGAACCAATTTTGTGTTAGTTT 58.344 33.333 0.00 0.00 0.00 2.66
456 461 1.048601 ACACCGGACACAAGATGAGT 58.951 50.000 9.46 0.00 0.00 3.41
470 475 9.911788 ACACAAGATGAGTCCAATATCTAAAAT 57.088 29.630 0.00 0.00 31.30 1.82
516 521 9.676861 AACTAAACACACCCTTAGATAATTACC 57.323 33.333 0.00 0.00 0.00 2.85
555 560 9.806448 ATATATCATTATGGTACCTGTTTGCAA 57.194 29.630 14.36 0.00 0.00 4.08
575 580 5.348451 TGCAACATATCGATGGATGTAATCG 59.652 40.000 12.95 0.00 46.86 3.34
580 585 1.691976 TCGATGGATGTAATCGGGCTT 59.308 47.619 6.03 0.00 46.86 4.35
585 590 3.541632 TGGATGTAATCGGGCTTCTTTC 58.458 45.455 0.00 0.00 46.86 2.62
655 660 3.634568 TTTTGCTATGTTGGTTGTCCG 57.365 42.857 0.00 0.00 36.30 4.79
663 668 5.295787 GCTATGTTGGTTGTCCGATTCATAA 59.704 40.000 0.00 0.00 36.30 1.90
730 735 7.589958 TTTTAGCATCCACTCAAACCTTTTA 57.410 32.000 0.00 0.00 0.00 1.52
731 736 7.589958 TTTAGCATCCACTCAAACCTTTTAA 57.410 32.000 0.00 0.00 0.00 1.52
732 737 7.589958 TTAGCATCCACTCAAACCTTTTAAA 57.410 32.000 0.00 0.00 0.00 1.52
771 778 8.690203 TTCTCCTCTCATACAATCAAACAAAA 57.310 30.769 0.00 0.00 0.00 2.44
772 779 8.690203 TCTCCTCTCATACAATCAAACAAAAA 57.310 30.769 0.00 0.00 0.00 1.94
798 805 9.566432 AAAAGTCTAGTTGAATTGAGATGAACT 57.434 29.630 0.00 0.00 32.91 3.01
806 813 8.080417 AGTTGAATTGAGATGAACTTGACATTG 58.920 33.333 0.00 0.00 0.00 2.82
812 819 5.708697 TGAGATGAACTTGACATTGCATTCT 59.291 36.000 0.00 0.00 0.00 2.40
816 823 9.399797 AGATGAACTTGACATTGCATTCTTATA 57.600 29.630 0.00 0.00 0.00 0.98
831 839 9.653516 TGCATTCTTATATTTTTCCTATTCCCA 57.346 29.630 0.00 0.00 0.00 4.37
832 840 9.914131 GCATTCTTATATTTTTCCTATTCCCAC 57.086 33.333 0.00 0.00 0.00 4.61
860 868 1.672881 GAATTCTGCGATCAAGTGGGG 59.327 52.381 0.00 0.00 0.00 4.96
866 874 2.971598 CGATCAAGTGGGGCCTGGT 61.972 63.158 0.84 0.00 0.00 4.00
877 885 1.282382 GGGCCTGGTAGTTTGGTAGA 58.718 55.000 0.84 0.00 0.00 2.59
878 886 1.065636 GGGCCTGGTAGTTTGGTAGAC 60.066 57.143 0.84 0.00 0.00 2.59
881 889 2.547990 CCTGGTAGTTTGGTAGACCCT 58.452 52.381 0.00 0.00 34.29 4.34
884 892 3.320129 TGGTAGTTTGGTAGACCCTTGT 58.680 45.455 0.00 0.00 34.29 3.16
899 907 6.665695 AGACCCTTGTAAAAAGAAGTTGGTA 58.334 36.000 0.00 0.00 0.00 3.25
1055 1080 1.144936 CCCCGACCTGATGCTTCTC 59.855 63.158 0.88 0.00 0.00 2.87
1056 1081 1.144936 CCCGACCTGATGCTTCTCC 59.855 63.158 0.88 0.00 0.00 3.71
1057 1082 1.144936 CCGACCTGATGCTTCTCCC 59.855 63.158 0.88 0.00 0.00 4.30
1058 1083 1.333636 CCGACCTGATGCTTCTCCCT 61.334 60.000 0.88 0.00 0.00 4.20
1059 1084 0.103937 CGACCTGATGCTTCTCCCTC 59.896 60.000 0.88 0.00 0.00 4.30
1060 1085 1.494960 GACCTGATGCTTCTCCCTCT 58.505 55.000 0.88 0.00 0.00 3.69
1251 1276 4.063529 CCTTCGCAAGCAGGTGAA 57.936 55.556 3.99 3.99 46.37 3.18
1255 1280 2.076100 CTTCGCAAGCAGGTGAATACA 58.924 47.619 4.41 0.00 36.75 2.29
1256 1281 2.177394 TCGCAAGCAGGTGAATACAA 57.823 45.000 0.00 0.00 37.18 2.41
1257 1282 1.804151 TCGCAAGCAGGTGAATACAAC 59.196 47.619 0.00 0.00 37.18 3.32
1259 1284 1.202348 GCAAGCAGGTGAATACAACCC 59.798 52.381 0.00 0.00 33.63 4.11
1261 1286 0.331616 AGCAGGTGAATACAACCCCC 59.668 55.000 0.00 0.00 33.63 5.40
1299 1603 2.202810 CGCTCCCTTTCTCGCTCC 60.203 66.667 0.00 0.00 0.00 4.70
1301 1605 2.660064 GCTCCCTTTCTCGCTCCCA 61.660 63.158 0.00 0.00 0.00 4.37
1317 1629 3.382832 CAGGAACCTCTCGCCGGT 61.383 66.667 1.90 0.00 35.97 5.28
1386 1709 3.989698 CTGCCGCTGTGGTACTCGG 62.990 68.421 9.31 0.00 44.29 4.63
1403 1726 2.794028 GGACCGACGATTCTCCCCC 61.794 68.421 0.00 0.00 0.00 5.40
1451 1779 1.084289 GTAAAATTGGAGCGCCTCGT 58.916 50.000 8.34 0.00 34.31 4.18
1483 1811 1.475280 GTAGTCCGTGTATGTGGAGCA 59.525 52.381 0.00 0.00 34.21 4.26
1530 1858 3.602390 AATTGTGGAGTTTTCGTGACG 57.398 42.857 0.00 0.00 0.00 4.35
1532 1860 0.460459 TGTGGAGTTTTCGTGACGCA 60.460 50.000 0.00 0.00 0.00 5.24
1539 1867 3.450578 AGTTTTCGTGACGCAAAGACTA 58.549 40.909 2.57 0.00 0.00 2.59
1540 1868 3.489785 AGTTTTCGTGACGCAAAGACTAG 59.510 43.478 2.57 0.00 0.00 2.57
1689 2654 6.473758 ACTAGAGTTTTGATCCTACCAAACC 58.526 40.000 0.00 0.00 33.74 3.27
1725 2690 4.083324 TCTGATGCTTTTGTTGGTTCGATC 60.083 41.667 0.00 0.00 0.00 3.69
1734 2699 3.915536 TGTTGGTTCGATCGTGTAATCA 58.084 40.909 15.94 5.93 0.00 2.57
1788 2753 5.635700 GGTGTTAGTCTTGTTCATGAGAGTC 59.364 44.000 0.00 0.00 0.00 3.36
1789 2754 5.343593 GTGTTAGTCTTGTTCATGAGAGTCG 59.656 44.000 0.00 0.00 0.00 4.18
1850 2815 2.173356 TCTATGGCTGAACCCATCCTTG 59.827 50.000 0.00 0.00 44.30 3.61
1961 2965 1.942657 CATTGGCAGTTAGGTCATCGG 59.057 52.381 0.00 0.00 0.00 4.18
1969 2984 1.553704 GTTAGGTCATCGGTTCCTGGT 59.446 52.381 0.00 0.00 33.34 4.00
1999 3014 3.274196 CGTCGACGCAAGAAATTGG 57.726 52.632 26.59 0.00 43.62 3.16
2000 3015 0.511221 CGTCGACGCAAGAAATTGGT 59.489 50.000 26.59 0.00 43.62 3.67
2064 3079 4.257731 TGCACTGGACGATTTTATTAGCA 58.742 39.130 0.00 0.00 0.00 3.49
2101 3117 5.975344 CGTCTATAAACTGTCGGATGCTTTA 59.025 40.000 0.00 0.00 0.00 1.85
2102 3118 6.474427 CGTCTATAAACTGTCGGATGCTTTAA 59.526 38.462 0.00 0.00 0.00 1.52
2103 3119 7.009815 CGTCTATAAACTGTCGGATGCTTTAAA 59.990 37.037 0.00 0.00 0.00 1.52
2104 3120 8.662141 GTCTATAAACTGTCGGATGCTTTAAAA 58.338 33.333 0.00 0.00 0.00 1.52
2147 3163 3.730215 TTCCCTAAGCACCTGCATAAA 57.270 42.857 0.00 0.00 45.16 1.40
2344 3360 8.950210 GTTTCTATGAAATCAGATGGTTCAGAA 58.050 33.333 4.28 1.48 34.91 3.02
2434 3450 1.062198 TGGGTATCATCAGGAGGCTCA 60.062 52.381 17.69 0.00 0.00 4.26
2820 3838 0.679505 TTGACGTGGAAGAGTCTGGG 59.320 55.000 0.00 0.00 38.16 4.45
3071 4089 5.336107 TTCAAATTGAAGGAGCCTCACTCG 61.336 45.833 4.03 0.00 37.61 4.18
3091 4110 6.594159 CACTCGCCTTTCTTTTAGGAGATAAA 59.406 38.462 0.00 0.00 40.20 1.40
3093 4112 8.483758 ACTCGCCTTTCTTTTAGGAGATAAATA 58.516 33.333 0.00 0.00 40.20 1.40
3094 4113 9.495572 CTCGCCTTTCTTTTAGGAGATAAATAT 57.504 33.333 0.00 0.00 40.20 1.28
3198 4222 2.884639 CCCGCCACATAAAATAAGGGAG 59.115 50.000 0.00 0.00 39.95 4.30
3204 4228 4.262164 CCACATAAAATAAGGGAGCCATGC 60.262 45.833 0.00 0.00 0.00 4.06
3206 4230 2.548464 AAAATAAGGGAGCCATGCCA 57.452 45.000 0.00 0.00 40.01 4.92
3311 4335 2.893489 GTTCAGGAATTCCACAAAGGCT 59.107 45.455 26.22 0.00 38.89 4.58
3323 4347 7.801716 TTCCACAAAGGCTCATATATTACAC 57.198 36.000 0.00 0.00 37.29 2.90
3364 4388 2.098770 TGCTAATAATTGCATGTGCGCA 59.901 40.909 5.66 5.66 45.83 6.09
3385 4409 6.032094 CGCATCTATTTCAGTTTGAGCAAAT 58.968 36.000 0.00 0.00 32.36 2.32
3464 4506 6.804534 TCATTAAAAACTGCAACAAGAACG 57.195 33.333 0.00 0.00 0.00 3.95
3472 4514 3.100817 CTGCAACAAGAACGACAACAAG 58.899 45.455 0.00 0.00 0.00 3.16
3476 4518 3.651562 ACAAGAACGACAACAAGAACG 57.348 42.857 0.00 0.00 0.00 3.95
3582 4626 2.159085 GGCACGTGGATAGCTAACTTCT 60.159 50.000 18.88 0.00 0.00 2.85
3627 4671 4.137116 TCTTTGGTGATATTCCAGTCCG 57.863 45.455 1.83 0.00 36.28 4.79
3657 4701 3.203710 TCTCTTAACGGACTCCTCCCATA 59.796 47.826 0.00 0.00 31.93 2.74
3675 4719 4.166144 CCCATATCAAGTTTGGTCTACCCT 59.834 45.833 0.00 0.00 34.29 4.34
3778 4823 3.338249 ACCATCTCAAACGATGTTGGAG 58.662 45.455 7.60 7.60 39.26 3.86
3824 4869 9.184523 GCTACTCCAACTCTATCATGTATATCT 57.815 37.037 0.00 0.00 0.00 1.98
3886 4931 5.677567 ACATATCAACATGCACATCTCTGA 58.322 37.500 0.00 0.00 0.00 3.27
4006 5057 1.136110 TGTCGCACTCTCTTGTCACAA 59.864 47.619 0.00 0.00 0.00 3.33
4068 5119 2.637382 TGGTTCAGTGGCTCACATCTTA 59.363 45.455 7.86 0.00 36.74 2.10
4119 5173 1.344763 CCCAGATATCGAAGGTGTCCC 59.655 57.143 9.91 0.00 0.00 4.46
4143 5197 1.212935 GAGGTATCACTTGCCCACCAT 59.787 52.381 0.00 0.00 0.00 3.55
4157 5211 0.107017 CACCATGGCTAACCTCCCTG 60.107 60.000 13.04 0.00 36.63 4.45
4212 5267 4.566004 GCACCTCATGTACTCAGTTGTAA 58.434 43.478 0.00 0.00 0.00 2.41
4217 5289 6.929606 ACCTCATGTACTCAGTTGTAACTTTC 59.070 38.462 0.00 0.00 37.08 2.62
4261 5334 7.180408 TCCACAGCTCTAACTTTCTATTAACCT 59.820 37.037 0.00 0.00 0.00 3.50
4325 5399 3.976654 AGCATACACCATGGGTTATCTCT 59.023 43.478 18.09 8.17 34.97 3.10
4366 5601 3.110447 TCCATCACCAAAGCAAAAAGC 57.890 42.857 0.00 0.00 46.19 3.51
4389 5625 0.540597 GGGCTCAAAGCTGACCCTTT 60.541 55.000 0.00 0.00 41.99 3.11
4396 5632 0.183492 AAGCTGACCCTTTGTGCAGA 59.817 50.000 0.00 0.00 0.00 4.26
4519 5765 4.037446 GGTTTTCTGGTAGTCATTGTTGCA 59.963 41.667 0.00 0.00 0.00 4.08
4642 5888 4.802039 GTGAGATTGTTTGCATGCTTATGG 59.198 41.667 20.33 0.00 0.00 2.74
4658 5904 4.884164 GCTTATGGTGGAAGCTGTAAAGAT 59.116 41.667 0.00 0.00 44.83 2.40
4684 5930 6.749036 ATAGTACCTAGGTGCAGCTTTTAT 57.251 37.500 28.92 15.08 33.14 1.40
4790 6038 7.339976 TGATGATTGTGGCAGAGAATAAATGAA 59.660 33.333 0.00 0.00 0.00 2.57
4832 6080 6.783708 ATGAACTTGAACCAACAACCTTTA 57.216 33.333 0.00 0.00 0.00 1.85
4834 6082 5.712917 TGAACTTGAACCAACAACCTTTACT 59.287 36.000 0.00 0.00 0.00 2.24
5043 6291 3.900941 GTATTGGACCACAACTTGCAAG 58.099 45.455 24.84 24.84 42.94 4.01
5224 6472 8.584157 CAGCACAGGAAGTCTATTCTTATCTAT 58.416 37.037 0.00 0.00 0.00 1.98
5299 6547 8.511604 AAGCAGTAATTACAACTATGAATGCT 57.488 30.769 17.65 15.62 0.00 3.79
5321 6569 5.392595 GCTGACACTAGAGAACAGTCCTTAG 60.393 48.000 0.00 0.00 0.00 2.18
5458 6866 2.024414 GCCTGTTTTGTTCACTCAGGT 58.976 47.619 10.49 0.00 44.99 4.00
5463 6871 5.353394 TGTTTTGTTCACTCAGGTAGTCT 57.647 39.130 0.00 0.00 35.76 3.24
5598 7008 5.652452 AGAATTTGTCGGCCTATTAAGCTTT 59.348 36.000 3.20 0.00 0.00 3.51
5607 7017 4.082245 GGCCTATTAAGCTTTCAAGTTGCA 60.082 41.667 3.20 0.00 0.00 4.08
5608 7018 5.394553 GGCCTATTAAGCTTTCAAGTTGCAT 60.395 40.000 3.20 0.00 0.00 3.96
5637 7047 6.569780 TCTGAAATTCGTAGATTGGATTCGA 58.430 36.000 0.00 0.00 35.04 3.71
5644 7054 4.094739 TCGTAGATTGGATTCGACGTACAA 59.905 41.667 6.92 0.00 42.80 2.41
5648 7058 4.804139 AGATTGGATTCGACGTACAACATC 59.196 41.667 0.00 0.00 0.00 3.06
5649 7059 3.579335 TGGATTCGACGTACAACATCA 57.421 42.857 0.00 0.00 0.00 3.07
5650 7060 4.118093 TGGATTCGACGTACAACATCAT 57.882 40.909 0.00 0.00 0.00 2.45
5652 7062 3.302480 GGATTCGACGTACAACATCATGC 60.302 47.826 0.00 0.00 0.00 4.06
5653 7063 2.355717 TCGACGTACAACATCATGCA 57.644 45.000 0.00 0.00 0.00 3.96
5654 7064 2.258755 TCGACGTACAACATCATGCAG 58.741 47.619 0.00 0.00 0.00 4.41
5655 7065 1.992667 CGACGTACAACATCATGCAGT 59.007 47.619 0.00 0.00 0.00 4.40
5657 7067 3.610677 CGACGTACAACATCATGCAGTTA 59.389 43.478 0.00 0.00 0.00 2.24
5658 7068 4.259411 CGACGTACAACATCATGCAGTTAG 60.259 45.833 0.00 1.93 0.00 2.34
5659 7069 4.566004 ACGTACAACATCATGCAGTTAGT 58.434 39.130 0.00 6.43 0.00 2.24
5660 7070 5.716094 ACGTACAACATCATGCAGTTAGTA 58.284 37.500 0.00 5.71 0.00 1.82
5661 7071 6.338146 ACGTACAACATCATGCAGTTAGTAT 58.662 36.000 0.00 0.00 0.00 2.12
5677 7087 5.705441 AGTTAGTATTTTGCTGCTTGCTGTA 59.295 36.000 0.00 0.00 43.37 2.74
5696 7106 5.994054 GCTGTATGTCAACTGTATGGATCAT 59.006 40.000 0.00 0.00 0.00 2.45
5741 7151 3.143515 GCTAAAGGGGCTGCTGGC 61.144 66.667 8.77 8.77 40.90 4.85
5742 7152 2.679716 CTAAAGGGGCTGCTGGCT 59.320 61.111 16.61 0.00 41.46 4.75
5743 7153 1.751927 CTAAAGGGGCTGCTGGCTG 60.752 63.158 16.61 0.00 41.46 4.85
5744 7154 2.202236 CTAAAGGGGCTGCTGGCTGA 62.202 60.000 16.61 0.00 41.46 4.26
5801 7212 1.644509 TCTGTGTCCACTGCCATAGT 58.355 50.000 0.00 0.00 41.36 2.12
5889 7306 6.783708 ATTCTACTAGTATAGATGGCTGGC 57.216 41.667 2.33 0.00 42.77 4.85
5890 7307 5.522315 TCTACTAGTATAGATGGCTGGCT 57.478 43.478 2.33 0.00 42.77 4.75
5891 7308 5.257262 TCTACTAGTATAGATGGCTGGCTG 58.743 45.833 2.33 0.00 42.77 4.85
5892 7309 4.119556 ACTAGTATAGATGGCTGGCTGA 57.880 45.455 2.00 0.00 42.77 4.26
5929 7346 4.431809 CAAAGGTGTGTTGATTTGCTGAA 58.568 39.130 0.00 0.00 0.00 3.02
5992 7409 3.888930 CCAAGCTTTTCTGAACCCTTACA 59.111 43.478 0.00 0.00 0.00 2.41
6012 7429 8.630037 CCTTACATTTTCCATATTTAGGTGGAC 58.370 37.037 0.00 0.00 43.85 4.02
6057 7474 2.202987 CTGGGCGCTCTCATGTCC 60.203 66.667 9.62 0.00 0.00 4.02
6081 7498 1.766069 GTTCAACGTTTGGTGGCATC 58.234 50.000 0.00 0.00 0.00 3.91
6130 7547 2.253610 GGATCCCCACGGTATGTATCA 58.746 52.381 0.00 0.00 0.00 2.15
6137 7554 4.039973 CCCCACGGTATGTATCACATAGTT 59.960 45.833 0.00 0.00 41.31 2.24
6138 7555 5.227908 CCCACGGTATGTATCACATAGTTC 58.772 45.833 0.00 0.00 41.31 3.01
6140 7557 6.455647 CCACGGTATGTATCACATAGTTCAT 58.544 40.000 0.00 0.00 41.31 2.57
6164 7581 1.194547 TGTGAGCAAGCGAAAATCGTC 59.805 47.619 1.45 0.00 42.81 4.20
6171 7588 3.483738 GCAAGCGAAAATCGTCCTCTTAC 60.484 47.826 1.45 0.00 42.81 2.34
6205 7622 4.021719 CCTCACAATTGCTTTCCACTGAAT 60.022 41.667 5.05 0.00 0.00 2.57
6403 7820 4.587262 ACAGTGCCGGTACAGATAATGATA 59.413 41.667 25.19 0.00 0.00 2.15
6404 7821 5.246203 ACAGTGCCGGTACAGATAATGATAT 59.754 40.000 25.19 0.00 0.00 1.63
6405 7822 5.578336 CAGTGCCGGTACAGATAATGATATG 59.422 44.000 25.19 5.64 0.00 1.78
6561 8313 1.949525 CGAGGGATTTCATCGGCATTT 59.050 47.619 0.00 0.00 32.93 2.32
6576 8328 2.419574 GGCATTTCCGTCCAGCTACTTA 60.420 50.000 0.00 0.00 0.00 2.24
6577 8329 2.608090 GCATTTCCGTCCAGCTACTTAC 59.392 50.000 0.00 0.00 0.00 2.34
6578 8330 3.857052 CATTTCCGTCCAGCTACTTACA 58.143 45.455 0.00 0.00 0.00 2.41
6579 8331 3.308438 TTTCCGTCCAGCTACTTACAC 57.692 47.619 0.00 0.00 0.00 2.90
6580 8332 1.913778 TCCGTCCAGCTACTTACACA 58.086 50.000 0.00 0.00 0.00 3.72
6581 8333 1.542915 TCCGTCCAGCTACTTACACAC 59.457 52.381 0.00 0.00 0.00 3.82
6582 8334 1.271379 CCGTCCAGCTACTTACACACA 59.729 52.381 0.00 0.00 0.00 3.72
6583 8335 2.325761 CGTCCAGCTACTTACACACAC 58.674 52.381 0.00 0.00 0.00 3.82
6584 8336 2.685100 GTCCAGCTACTTACACACACC 58.315 52.381 0.00 0.00 0.00 4.16
6600 8352 2.093764 CACACCCTCTGGATCTGAGTTC 60.094 54.545 12.72 0.00 34.81 3.01
6604 8356 4.467795 CACCCTCTGGATCTGAGTTCTAAA 59.532 45.833 12.72 0.00 34.81 1.85
6683 8435 3.826157 TCCGCATCCATCCAATTTAATCC 59.174 43.478 0.00 0.00 0.00 3.01
6709 8462 2.787601 TTGCGACGGGATAGACATAC 57.212 50.000 0.00 0.00 0.00 2.39
6710 8463 1.682740 TGCGACGGGATAGACATACA 58.317 50.000 0.00 0.00 0.00 2.29
6711 8464 2.235891 TGCGACGGGATAGACATACAT 58.764 47.619 0.00 0.00 0.00 2.29
6712 8465 2.228103 TGCGACGGGATAGACATACATC 59.772 50.000 0.00 0.00 0.00 3.06
6713 8466 2.415625 GCGACGGGATAGACATACATCC 60.416 54.545 0.00 0.00 40.11 3.51
6718 8471 3.594603 GGATAGACATACATCCCCACG 57.405 52.381 0.00 0.00 35.61 4.94
6719 8472 3.162666 GGATAGACATACATCCCCACGA 58.837 50.000 0.00 0.00 35.61 4.35
6720 8473 3.056749 GGATAGACATACATCCCCACGAC 60.057 52.174 0.00 0.00 35.61 4.34
6721 8474 1.860641 AGACATACATCCCCACGACA 58.139 50.000 0.00 0.00 0.00 4.35
6722 8475 2.398588 AGACATACATCCCCACGACAT 58.601 47.619 0.00 0.00 0.00 3.06
6723 8476 3.572642 AGACATACATCCCCACGACATA 58.427 45.455 0.00 0.00 0.00 2.29
6724 8477 4.160329 AGACATACATCCCCACGACATAT 58.840 43.478 0.00 0.00 0.00 1.78
6739 8492 0.861837 CATATTCGCAGAGGCCGTTC 59.138 55.000 0.00 0.00 38.43 3.95
6783 8536 1.804748 GGAAACTTCAAGGGCTACGTG 59.195 52.381 0.00 0.00 0.00 4.49
6809 8562 5.506686 AAACTTGCCAAAGTCTTCTCTTC 57.493 39.130 0.00 0.00 46.15 2.87
6831 8584 2.146342 CAGGCGGACAATGATATGGAC 58.854 52.381 0.00 0.00 0.00 4.02
6837 8602 3.675225 CGGACAATGATATGGACGTGATC 59.325 47.826 0.00 0.00 0.00 2.92
6999 10423 1.668151 GTTCCGGTGACTGTGAGCC 60.668 63.158 0.00 0.00 0.00 4.70
7096 10537 0.796312 GCATGCGTACATATTCCCCG 59.204 55.000 0.00 0.00 33.67 5.73
7163 10604 1.103803 ACACGTCGCCATGATCTACT 58.896 50.000 0.00 0.00 0.00 2.57
7165 10606 0.308068 ACGTCGCCATGATCTACTCG 59.692 55.000 0.00 0.00 0.00 4.18
7239 10681 2.202623 GTCCAGCGGCAGTACTCG 60.203 66.667 1.45 0.00 0.00 4.18
7249 10691 1.293498 CAGTACTCGCCACTGCCTT 59.707 57.895 0.00 0.00 37.22 4.35
7288 10730 2.027073 ACCAGTACGTGCATGCGTG 61.027 57.895 14.09 10.40 45.33 5.34
7318 10760 0.941542 CAAGTTTCTTCACCGCGGAA 59.058 50.000 35.90 16.42 0.00 4.30
7321 10763 0.234884 GTTTCTTCACCGCGGAACTG 59.765 55.000 35.90 20.82 0.00 3.16
7323 10765 0.320374 TTCTTCACCGCGGAACTGAT 59.680 50.000 35.90 4.54 0.00 2.90
7327 10769 4.143333 ACCGCGGAACTGATCGGG 62.143 66.667 35.90 0.00 45.58 5.14
7330 10772 2.893398 GCGGAACTGATCGGGTCT 59.107 61.111 18.99 0.00 0.00 3.85
7359 10801 1.134580 CGCCTGGTCTCACAGAATCAT 60.135 52.381 0.00 0.00 40.97 2.45
7361 10803 2.355513 GCCTGGTCTCACAGAATCATGT 60.356 50.000 0.00 0.00 40.97 3.21
7387 10829 4.415501 GCAACGACGACTGCAGCG 62.416 66.667 22.98 22.98 38.48 5.18
7388 10830 4.415501 CAACGACGACTGCAGCGC 62.416 66.667 24.03 17.27 0.00 5.92
7417 10859 1.975407 CCCAGTTGCTTCAGCCCAG 60.975 63.158 0.00 0.00 41.18 4.45
7418 10860 2.633509 CCAGTTGCTTCAGCCCAGC 61.634 63.158 0.00 0.00 41.18 4.85
7419 10861 2.282745 AGTTGCTTCAGCCCAGCC 60.283 61.111 0.00 0.00 41.18 4.85
7420 10862 3.376918 GTTGCTTCAGCCCAGCCC 61.377 66.667 0.00 0.00 41.18 5.19
7422 10864 4.666253 TGCTTCAGCCCAGCCCAC 62.666 66.667 0.00 0.00 41.18 4.61
7427 10869 4.431131 CAGCCCAGCCCACGGAAT 62.431 66.667 0.00 0.00 0.00 3.01
7428 10870 4.115199 AGCCCAGCCCACGGAATC 62.115 66.667 0.00 0.00 0.00 2.52
7431 10873 4.096003 CCAGCCCACGGAATCGGT 62.096 66.667 0.00 0.00 41.39 4.69
7432 10874 2.727392 CCAGCCCACGGAATCGGTA 61.727 63.158 0.00 0.00 41.39 4.02
7434 10876 1.985662 AGCCCACGGAATCGGTACA 60.986 57.895 0.00 0.00 41.39 2.90
7435 10877 1.145377 GCCCACGGAATCGGTACAT 59.855 57.895 0.00 0.00 41.39 2.29
7438 10880 0.179084 CCACGGAATCGGTACATGCT 60.179 55.000 0.00 0.00 41.39 3.79
7439 10881 1.209128 CACGGAATCGGTACATGCTC 58.791 55.000 0.00 0.00 41.39 4.26
7442 10884 1.202533 CGGAATCGGTACATGCTCCTT 60.203 52.381 0.00 0.00 0.00 3.36
7443 10885 2.741878 CGGAATCGGTACATGCTCCTTT 60.742 50.000 0.00 0.00 0.00 3.11
7444 10886 3.279434 GGAATCGGTACATGCTCCTTTT 58.721 45.455 0.00 0.00 0.00 2.27
7445 10887 3.694566 GGAATCGGTACATGCTCCTTTTT 59.305 43.478 0.00 0.00 0.00 1.94
7477 12330 5.573337 ACGTACTACCAACATACTCCTTC 57.427 43.478 0.00 0.00 0.00 3.46
7479 12332 4.497006 CGTACTACCAACATACTCCTTCCG 60.497 50.000 0.00 0.00 0.00 4.30
7489 12342 4.704833 TCCTTCCGGCAGCTGCAC 62.705 66.667 37.63 25.55 44.36 4.57
7490 12343 4.711949 CCTTCCGGCAGCTGCACT 62.712 66.667 37.63 0.00 44.36 4.40
7491 12344 3.123620 CTTCCGGCAGCTGCACTC 61.124 66.667 37.63 20.92 44.36 3.51
7492 12345 3.889134 CTTCCGGCAGCTGCACTCA 62.889 63.158 37.63 18.75 44.36 3.41
7501 12357 0.031721 AGCTGCACTCAAAAGCTTGC 59.968 50.000 0.00 0.00 44.79 4.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.158559 TCCGATGACAACAACATTGGG 58.841 47.619 12.42 4.28 44.82 4.12
15 16 2.027745 AGAGCTCCGATGACAACAACAT 60.028 45.455 10.93 0.00 0.00 2.71
16 17 1.344438 AGAGCTCCGATGACAACAACA 59.656 47.619 10.93 0.00 0.00 3.33
17 18 1.996191 GAGAGCTCCGATGACAACAAC 59.004 52.381 10.93 0.00 0.00 3.32
18 19 1.895798 AGAGAGCTCCGATGACAACAA 59.104 47.619 10.93 0.00 0.00 2.83
29 31 1.045911 ACGATGGGGAAGAGAGCTCC 61.046 60.000 10.93 1.70 0.00 4.70
63 65 2.027625 GTTCCTTGTCGCCGACCAG 61.028 63.158 15.60 13.18 0.00 4.00
65 67 0.037975 TTAGTTCCTTGTCGCCGACC 60.038 55.000 15.60 0.00 0.00 4.79
75 77 1.346722 CACCGACCACCTTAGTTCCTT 59.653 52.381 0.00 0.00 0.00 3.36
97 99 1.067084 ATGCCTGAGCTCGTCATCG 59.933 57.895 9.64 0.00 40.80 3.84
102 104 2.685017 TCCCATGCCTGAGCTCGT 60.685 61.111 9.64 0.00 40.80 4.18
106 108 0.747283 CTGTTCTCCCATGCCTGAGC 60.747 60.000 0.00 0.00 40.48 4.26
129 131 0.326618 TCACTCCCAATCTCTCCCCC 60.327 60.000 0.00 0.00 0.00 5.40
178 180 1.152355 CCAGGTGAAAAAGGGCCCA 60.152 57.895 27.56 0.00 0.00 5.36
182 184 2.623416 GTTCTGACCAGGTGAAAAAGGG 59.377 50.000 0.00 0.00 0.00 3.95
197 199 1.980232 TTAGGGCGAGCCGTTCTGA 60.980 57.895 14.75 0.00 36.85 3.27
199 201 2.577593 GTTAGGGCGAGCCGTTCT 59.422 61.111 14.75 5.68 36.85 3.01
213 215 2.817834 GCGTGCTCATGGCCGTTA 60.818 61.111 0.00 0.00 40.92 3.18
230 232 3.545481 GACATGGCTGACGACGCG 61.545 66.667 3.53 3.53 0.00 6.01
274 276 7.413657 GGTTAAAATCTAAGCGTGCTTATGACA 60.414 37.037 14.19 1.00 37.81 3.58
323 326 3.192633 ACACAAAATTGGTTCGCTATCCC 59.807 43.478 0.00 0.00 0.00 3.85
324 327 4.434713 ACACAAAATTGGTTCGCTATCC 57.565 40.909 0.00 0.00 0.00 2.59
443 447 8.948631 TTTAGATATTGGACTCATCTTGTGTC 57.051 34.615 2.01 2.01 39.42 3.67
475 480 6.824196 TGTGTTTAGTTGGTGTAACAAGATGA 59.176 34.615 0.00 0.00 41.88 2.92
493 498 7.981225 GTCGGTAATTATCTAAGGGTGTGTTTA 59.019 37.037 0.00 0.00 0.00 2.01
494 499 6.820152 GTCGGTAATTATCTAAGGGTGTGTTT 59.180 38.462 0.00 0.00 0.00 2.83
555 560 4.680708 GCCCGATTACATCCATCGATATGT 60.681 45.833 16.04 16.04 45.30 2.29
575 580 5.411831 AATCCTTTGAATGAAAGAAGCCC 57.588 39.130 0.00 0.00 43.50 5.19
642 647 5.710099 ACTTTATGAATCGGACAACCAACAT 59.290 36.000 0.00 0.00 35.59 2.71
701 706 6.494835 AGGTTTGAGTGGATGCTAAAATTTCT 59.505 34.615 0.00 0.00 0.00 2.52
703 708 6.670695 AGGTTTGAGTGGATGCTAAAATTT 57.329 33.333 0.00 0.00 0.00 1.82
772 779 9.566432 AGTTCATCTCAATTCAACTAGACTTTT 57.434 29.630 0.00 0.00 0.00 2.27
776 783 8.439286 GTCAAGTTCATCTCAATTCAACTAGAC 58.561 37.037 0.00 0.00 0.00 2.59
779 786 8.853077 ATGTCAAGTTCATCTCAATTCAACTA 57.147 30.769 0.00 0.00 0.00 2.24
782 789 6.864685 GCAATGTCAAGTTCATCTCAATTCAA 59.135 34.615 0.00 0.00 0.00 2.69
806 813 9.914131 GTGGGAATAGGAAAAATATAAGAATGC 57.086 33.333 0.00 0.00 0.00 3.56
816 823 8.411991 TCTAAAAACGTGGGAATAGGAAAAAT 57.588 30.769 0.00 0.00 0.00 1.82
822 829 7.472543 CAGAATTCTAAAAACGTGGGAATAGG 58.527 38.462 7.86 0.00 0.00 2.57
828 836 3.187637 TCGCAGAATTCTAAAAACGTGGG 59.812 43.478 7.86 2.90 0.00 4.61
831 839 5.856126 TGATCGCAGAATTCTAAAAACGT 57.144 34.783 7.86 0.00 43.58 3.99
832 840 6.247165 CACTTGATCGCAGAATTCTAAAAACG 59.753 38.462 7.86 7.54 43.58 3.60
860 868 1.065636 GGGTCTACCAAACTACCAGGC 60.066 57.143 0.81 0.00 39.85 4.85
866 874 7.804147 TCTTTTTACAAGGGTCTACCAAACTA 58.196 34.615 0.81 0.00 43.89 2.24
877 885 7.907841 AATACCAACTTCTTTTTACAAGGGT 57.092 32.000 0.00 0.00 0.00 4.34
878 886 9.607988 AAAAATACCAACTTCTTTTTACAAGGG 57.392 29.630 0.00 0.00 31.10 3.95
1048 1073 0.032615 GAGAGGGAGAGGGAGAAGCA 60.033 60.000 0.00 0.00 0.00 3.91
1055 1080 1.541672 GAGAGGGAGAGGGAGAGGG 59.458 68.421 0.00 0.00 0.00 4.30
1056 1081 1.292941 TGGAGAGGGAGAGGGAGAGG 61.293 65.000 0.00 0.00 0.00 3.69
1057 1082 0.633921 TTGGAGAGGGAGAGGGAGAG 59.366 60.000 0.00 0.00 0.00 3.20
1058 1083 0.336737 GTTGGAGAGGGAGAGGGAGA 59.663 60.000 0.00 0.00 0.00 3.71
1059 1084 1.040339 CGTTGGAGAGGGAGAGGGAG 61.040 65.000 0.00 0.00 0.00 4.30
1060 1085 1.000486 CGTTGGAGAGGGAGAGGGA 60.000 63.158 0.00 0.00 0.00 4.20
1098 1123 0.545309 TCAGTGGGAGAGGGTTGGAG 60.545 60.000 0.00 0.00 0.00 3.86
1287 1591 0.391793 GTTCCTGGGAGCGAGAAAGG 60.392 60.000 0.00 0.00 0.00 3.11
1290 1594 1.229209 AGGTTCCTGGGAGCGAGAA 60.229 57.895 0.00 0.00 0.00 2.87
1299 1603 4.148825 CCGGCGAGAGGTTCCTGG 62.149 72.222 9.30 0.00 0.00 4.45
1301 1605 3.382832 CACCGGCGAGAGGTTCCT 61.383 66.667 9.30 0.00 40.59 3.36
1317 1629 3.060020 GATCTCGGGCGAACGGACA 62.060 63.158 0.00 0.00 0.00 4.02
1386 1709 2.813200 GGGGGAGAATCGTCGGTC 59.187 66.667 0.00 0.00 34.37 4.79
1403 1726 1.651240 CTGAATTCAGCGGGCAGTGG 61.651 60.000 21.96 0.00 37.15 4.00
1469 1797 2.518949 GCATTTTGCTCCACATACACG 58.481 47.619 0.00 0.00 40.96 4.49
1474 1802 2.818130 AAACGCATTTTGCTCCACAT 57.182 40.000 0.00 0.00 42.25 3.21
1483 1811 6.421801 CAGAAGATGGAAGAAAAACGCATTTT 59.578 34.615 0.00 0.00 43.85 1.82
1500 1828 6.580041 CGAAAACTCCACAATTTCAGAAGATG 59.420 38.462 0.00 0.00 33.68 2.90
1530 1858 6.036191 GCCACTATGAAACTACTAGTCTTTGC 59.964 42.308 0.00 0.00 0.00 3.68
1532 1860 6.212791 TGGCCACTATGAAACTACTAGTCTTT 59.787 38.462 0.00 0.00 0.00 2.52
1539 1867 4.844349 ACATGGCCACTATGAAACTACT 57.156 40.909 8.16 0.00 0.00 2.57
1540 1868 5.186198 AGAACATGGCCACTATGAAACTAC 58.814 41.667 8.16 0.00 0.00 2.73
1689 2654 1.579698 CATCAGATGCAGAAGGGACG 58.420 55.000 0.00 0.00 0.00 4.79
1725 2690 7.093354 AGATACTCCATAAGCATGATTACACG 58.907 38.462 5.38 0.00 33.67 4.49
1763 2728 5.070446 ACTCTCATGAACAAGACTAACACCA 59.930 40.000 0.00 0.00 0.00 4.17
1788 2753 0.037975 ACACTAACCGTAAGCACCCG 60.038 55.000 0.00 0.00 0.00 5.28
1789 2754 1.270465 ACACACTAACCGTAAGCACCC 60.270 52.381 0.00 0.00 0.00 4.61
1850 2815 2.289756 GGCACCTTCTTATAGCCTAGCC 60.290 54.545 0.00 0.00 42.01 3.93
1941 2945 1.942657 CCGATGACCTAACTGCCAATG 59.057 52.381 0.00 0.00 0.00 2.82
1969 2984 2.596338 TCGACGCCTCACCTGACA 60.596 61.111 0.00 0.00 0.00 3.58
2119 3135 5.047377 TGCAGGTGCTTAGGGAAATAAAAAG 60.047 40.000 3.18 0.00 42.66 2.27
2434 3450 7.470702 CGGGTCAATGTATGAGATAGAACTTCT 60.471 40.741 0.00 0.00 39.19 2.85
2766 3784 4.895889 TCAAAGTCTCTCAAGTCAAGGAGA 59.104 41.667 0.00 0.00 37.81 3.71
2820 3838 3.676291 AGAAGAGCTTGTTCTGAGTCC 57.324 47.619 10.63 0.00 32.86 3.85
2891 3909 4.459337 GCAATACAGGTGCTCCTAAAAAGT 59.541 41.667 7.08 3.55 43.07 2.66
3091 4110 7.560991 TCATTTGTTTGCCCTGACAGAATATAT 59.439 33.333 3.32 0.00 0.00 0.86
3093 4112 5.716228 TCATTTGTTTGCCCTGACAGAATAT 59.284 36.000 3.32 0.00 0.00 1.28
3094 4113 5.076182 TCATTTGTTTGCCCTGACAGAATA 58.924 37.500 3.32 0.00 0.00 1.75
3179 4203 2.293399 GGCTCCCTTATTTTATGTGGCG 59.707 50.000 0.00 0.00 0.00 5.69
3198 4222 4.071423 ACCAAAAATAAAAGTGGCATGGC 58.929 39.130 13.29 13.29 34.27 4.40
3204 4228 8.998377 CCATAGGAAAACCAAAAATAAAAGTGG 58.002 33.333 0.00 0.00 37.17 4.00
3206 4230 8.214364 TGCCATAGGAAAACCAAAAATAAAAGT 58.786 29.630 0.00 0.00 0.00 2.66
3241 4265 8.816640 ATAACAAGCAAGAACAGTAAAATTGG 57.183 30.769 0.00 0.00 0.00 3.16
3285 4309 3.140325 TGTGGAATTCCTGAACCTCAC 57.860 47.619 24.73 12.43 36.82 3.51
3323 4347 6.615264 AGCATGCACTATAATCAAGTCAAG 57.385 37.500 21.98 0.00 0.00 3.02
3385 4409 7.725251 AGCATGTAGGTTGAAATTCAAGAAAA 58.275 30.769 8.88 0.00 37.00 2.29
3460 4502 3.181528 TGTTGTCGTTCTTGTTGTCGTTC 60.182 43.478 0.00 0.00 0.00 3.95
3464 4506 4.593597 TCTTGTTGTCGTTCTTGTTGTC 57.406 40.909 0.00 0.00 0.00 3.18
3472 4514 3.692791 AAAGGCTTCTTGTTGTCGTTC 57.307 42.857 0.00 0.00 0.00 3.95
3476 4518 4.023107 GGGACTAAAAGGCTTCTTGTTGTC 60.023 45.833 0.00 3.60 38.71 3.18
3582 4626 2.665089 CCATGGACAGGGGTGCGTA 61.665 63.158 5.56 0.00 38.35 4.42
3627 4671 2.944349 AGTCCGTTAAGAGAGATCCGAC 59.056 50.000 0.00 0.00 0.00 4.79
3657 4701 4.287766 GTCAGGGTAGACCAAACTTGAT 57.712 45.455 0.21 0.00 43.89 2.57
3675 4719 4.467438 TGCTGATAATGTCAAGAGAGGTCA 59.533 41.667 0.00 0.00 36.14 4.02
3867 4912 5.526479 GTGTATCAGAGATGTGCATGTTGAT 59.474 40.000 0.00 0.00 0.00 2.57
3886 4931 3.010138 ACATGCCCAACAGTTAGGTGTAT 59.990 43.478 0.00 0.00 31.03 2.29
3989 5038 1.528586 CCTTTGTGACAAGAGAGTGCG 59.471 52.381 0.00 0.00 0.00 5.34
4068 5119 5.221382 GCTGCAAAAGGATGGTGATATCATT 60.221 40.000 9.02 0.00 32.97 2.57
4119 5173 1.833630 TGGGCAAGTGATACCTCAGAG 59.166 52.381 0.00 0.00 30.18 3.35
4143 5197 1.615424 GGGACAGGGAGGTTAGCCA 60.615 63.158 0.00 0.00 37.19 4.75
4157 5211 2.569218 TAGGCACGAGGAGGAGGGAC 62.569 65.000 0.00 0.00 0.00 4.46
4212 5267 4.065789 GACAGACTTTGGAATCGGAAAGT 58.934 43.478 8.26 8.26 43.50 2.66
4217 5289 2.028112 TGGAGACAGACTTTGGAATCGG 60.028 50.000 0.00 0.00 35.01 4.18
4261 5334 1.750018 TCAACGATAGGCGGACGGA 60.750 57.895 0.00 0.00 46.49 4.69
4325 5399 5.248248 TGGATGAGGTCACAAGAGATACAAA 59.752 40.000 0.00 0.00 0.00 2.83
4366 5601 1.743996 GGTCAGCTTTGAGCCCTTAG 58.256 55.000 0.00 0.00 43.77 2.18
4389 5625 5.092554 TCCGATTAAAATAGGTCTGCACA 57.907 39.130 2.35 0.00 33.47 4.57
4396 5632 8.047310 ACTGATGACTTTCCGATTAAAATAGGT 58.953 33.333 2.35 0.00 33.47 3.08
4519 5765 4.263639 CCTCATGCCACTATATGTTCCCAT 60.264 45.833 0.00 0.00 34.97 4.00
4623 5869 3.866910 CCACCATAAGCATGCAAACAATC 59.133 43.478 21.98 0.00 0.00 2.67
4642 5888 7.224949 GGTACTATTCATCTTTACAGCTTCCAC 59.775 40.741 0.00 0.00 0.00 4.02
4658 5904 3.643237 AGCTGCACCTAGGTACTATTCA 58.357 45.455 15.80 5.20 41.70 2.57
4790 6038 5.489792 TCATACAACTTTGCTCTCTCCTT 57.510 39.130 0.00 0.00 0.00 3.36
4832 6080 0.183492 TTGCACCTTGGAGCTTGAGT 59.817 50.000 10.18 0.00 0.00 3.41
4834 6082 1.133823 TCTTTGCACCTTGGAGCTTGA 60.134 47.619 10.18 3.70 0.00 3.02
5010 6258 1.940613 GTCCAATACCTGCATCGGTTC 59.059 52.381 2.55 0.00 38.49 3.62
5224 6472 6.505044 TTAAGCACTGTTGTAGATCGTCTA 57.495 37.500 0.00 0.00 0.00 2.59
5264 6512 9.555727 AGTTGTAATTACTGCTTTGTCTAGAAA 57.444 29.630 16.33 0.00 0.00 2.52
5299 6547 5.706369 GTCTAAGGACTGTTCTCTAGTGTCA 59.294 44.000 0.00 0.00 39.24 3.58
5321 6569 5.236478 TGGTTTCGTTCTCAAATTCTCAGTC 59.764 40.000 0.00 0.00 0.00 3.51
5332 6580 1.603678 GCTACGGTGGTTTCGTTCTCA 60.604 52.381 0.00 0.00 41.38 3.27
5428 6836 3.756933 ACAAAACAGGCATGCTTCAAT 57.243 38.095 18.92 0.00 0.00 2.57
5430 6838 2.429971 TGAACAAAACAGGCATGCTTCA 59.570 40.909 18.92 13.61 0.00 3.02
5431 6839 2.796593 GTGAACAAAACAGGCATGCTTC 59.203 45.455 18.92 11.08 0.00 3.86
5458 6866 4.650972 AAACCCATTTGTAGCCAGACTA 57.349 40.909 0.00 0.00 0.00 2.59
5477 6885 7.038729 TGGGAATTCCATATTTGTAGTGCAAAA 60.039 33.333 25.67 1.44 44.29 2.44
5583 6993 4.662145 CAACTTGAAAGCTTAATAGGCCG 58.338 43.478 0.00 0.00 0.00 6.13
5608 7018 6.707290 TCCAATCTACGAATTTCAGAGGAAA 58.293 36.000 0.00 0.00 46.36 3.13
5637 7047 4.566004 ACTAACTGCATGATGTTGTACGT 58.434 39.130 12.15 0.00 0.00 3.57
5644 7054 6.558009 CAGCAAAATACTAACTGCATGATGT 58.442 36.000 0.00 0.00 37.26 3.06
5677 7087 4.446745 CCCCATGATCCATACAGTTGACAT 60.447 45.833 0.00 0.00 0.00 3.06
5696 7106 3.974719 ACACATGTAATAATGCACCCCA 58.025 40.909 0.00 0.00 0.00 4.96
5741 7151 7.814264 ATAAAAATATTCTCCAGCCAGTCAG 57.186 36.000 0.00 0.00 0.00 3.51
5742 7152 9.693739 TTAATAAAAATATTCTCCAGCCAGTCA 57.306 29.630 0.00 0.00 0.00 3.41
5818 7229 6.042781 TGGTTAAAGTTTGAGGAAGCTAGAGA 59.957 38.462 0.00 0.00 0.00 3.10
5889 7306 5.047092 ACCTTTGGTTTTCATGGCTTATCAG 60.047 40.000 0.00 0.00 27.29 2.90
5890 7307 4.837860 ACCTTTGGTTTTCATGGCTTATCA 59.162 37.500 0.00 0.00 27.29 2.15
5891 7308 5.170748 CACCTTTGGTTTTCATGGCTTATC 58.829 41.667 0.00 0.00 31.02 1.75
5892 7309 4.592778 ACACCTTTGGTTTTCATGGCTTAT 59.407 37.500 0.00 0.00 31.02 1.73
5929 7346 9.593134 TGCTACAAAAAGTATCACAACAAAAAT 57.407 25.926 0.00 0.00 30.93 1.82
5992 7409 7.122650 CACAGTGTCCACCTAAATATGGAAAAT 59.877 37.037 0.00 0.00 46.53 1.82
6012 7429 6.593515 TGCTTGAGCTTGTGATATCACAGTG 61.594 44.000 31.43 27.54 46.94 3.66
6081 7498 5.351233 TGACGTTGCTTATTTTGGTAGTG 57.649 39.130 0.00 0.00 0.00 2.74
6130 7547 4.558226 TGCTCACAAGGATGAACTATGT 57.442 40.909 0.00 0.00 0.00 2.29
6171 7588 3.789791 GCAATTGTGAGGCATACACATCG 60.790 47.826 7.40 6.18 45.52 3.84
6179 7596 2.028748 GTGGAAAGCAATTGTGAGGCAT 60.029 45.455 7.40 0.00 0.00 4.40
6205 7622 5.279006 GCGAGGATGTGGTTAATCTGATAGA 60.279 44.000 0.00 0.00 0.00 1.98
6284 7701 1.076332 ACATAAGAAACGCGCAGACC 58.924 50.000 5.73 0.00 0.00 3.85
6403 7820 9.806203 CAATATTGTACAAACACCAATCATCAT 57.194 29.630 13.23 0.00 34.61 2.45
6404 7821 9.018582 TCAATATTGTACAAACACCAATCATCA 57.981 29.630 13.23 0.00 34.61 3.07
6445 7864 2.844281 GCTGAAGAGCGATGTGAAAAC 58.156 47.619 0.00 0.00 34.87 2.43
6514 7956 6.548251 CCAAAAGGTACAAAACTAAAGAGGGA 59.452 38.462 0.00 0.00 0.00 4.20
6561 8313 1.542915 GTGTGTAAGTAGCTGGACGGA 59.457 52.381 0.00 0.00 0.00 4.69
6576 8328 0.979665 CAGATCCAGAGGGTGTGTGT 59.020 55.000 0.00 0.00 34.93 3.72
6577 8329 1.206610 CTCAGATCCAGAGGGTGTGTG 59.793 57.143 5.14 0.00 34.93 3.82
6578 8330 1.203237 ACTCAGATCCAGAGGGTGTGT 60.203 52.381 15.03 0.00 37.43 3.72
6579 8331 1.566211 ACTCAGATCCAGAGGGTGTG 58.434 55.000 15.03 0.00 37.43 3.82
6580 8332 2.183679 GAACTCAGATCCAGAGGGTGT 58.816 52.381 15.03 0.81 37.43 4.16
6581 8333 2.465813 AGAACTCAGATCCAGAGGGTG 58.534 52.381 15.03 0.00 37.43 4.61
6582 8334 2.938428 AGAACTCAGATCCAGAGGGT 57.062 50.000 15.03 4.85 37.43 4.34
6583 8335 4.959210 TCTTTAGAACTCAGATCCAGAGGG 59.041 45.833 15.03 0.00 37.43 4.30
6584 8336 6.729690 ATCTTTAGAACTCAGATCCAGAGG 57.270 41.667 15.03 0.00 37.43 3.69
6600 8352 5.406780 ACGTCAGCTCAACAAGAATCTTTAG 59.593 40.000 0.00 0.00 0.00 1.85
6604 8356 3.062763 CACGTCAGCTCAACAAGAATCT 58.937 45.455 0.00 0.00 0.00 2.40
6683 8435 2.693250 TATCCCGTCGCAATCGCAGG 62.693 60.000 0.00 0.00 38.40 4.85
6718 8471 0.249489 ACGGCCTCTGCGAATATGTC 60.249 55.000 0.00 0.00 38.85 3.06
6719 8472 0.178068 AACGGCCTCTGCGAATATGT 59.822 50.000 0.00 0.00 38.85 2.29
6720 8473 0.861837 GAACGGCCTCTGCGAATATG 59.138 55.000 0.00 0.00 38.85 1.78
6721 8474 0.597637 CGAACGGCCTCTGCGAATAT 60.598 55.000 0.00 0.00 38.85 1.28
6722 8475 1.226859 CGAACGGCCTCTGCGAATA 60.227 57.895 0.00 0.00 38.85 1.75
6723 8476 2.509336 CGAACGGCCTCTGCGAAT 60.509 61.111 0.00 0.00 38.85 3.34
6724 8477 4.735132 CCGAACGGCCTCTGCGAA 62.735 66.667 0.00 0.00 38.85 4.70
6783 8536 0.668535 AGACTTTGGCAAGTTTCGGC 59.331 50.000 0.00 0.00 43.79 5.54
6791 8544 2.174639 TGGGAAGAGAAGACTTTGGCAA 59.825 45.455 0.00 0.00 0.00 4.52
6809 8562 1.527034 CATATCATTGTCCGCCTGGG 58.473 55.000 0.00 0.00 35.24 4.45
6831 8584 4.776322 TTGCGGCTGGGGATCACG 62.776 66.667 0.00 0.00 0.00 4.35
7062 10495 0.169672 CATGCAAGTACACAGCAGCC 59.830 55.000 11.57 0.00 42.14 4.85
7067 10500 2.065512 TGTACGCATGCAAGTACACAG 58.934 47.619 25.46 7.91 45.49 3.66
7155 10596 1.067669 GTGCTGCATCCGAGTAGATCA 59.932 52.381 5.27 0.00 0.00 2.92
7163 10604 2.027073 GAACGTGTGCTGCATCCGA 61.027 57.895 24.12 1.04 0.00 4.55
7165 10606 2.870372 GGAACGTGTGCTGCATCC 59.130 61.111 5.27 4.33 0.00 3.51
7219 10661 2.125512 GTACTGCCGCTGGACTGG 60.126 66.667 5.40 0.00 0.00 4.00
7220 10662 1.153745 GAGTACTGCCGCTGGACTG 60.154 63.158 19.07 0.00 0.00 3.51
7221 10663 2.701780 CGAGTACTGCCGCTGGACT 61.702 63.158 14.57 14.57 0.00 3.85
7222 10664 2.202623 CGAGTACTGCCGCTGGAC 60.203 66.667 0.00 4.47 0.00 4.02
7239 10681 0.323360 TATTGTGGGAAGGCAGTGGC 60.323 55.000 9.02 9.02 40.13 5.01
7246 10688 1.553248 TCTCCGTGTATTGTGGGAAGG 59.447 52.381 0.00 0.00 0.00 3.46
7249 10691 2.369203 TGTTTCTCCGTGTATTGTGGGA 59.631 45.455 0.00 0.00 0.00 4.37
7318 10760 0.608640 GGTCAACAGACCCGATCAGT 59.391 55.000 3.27 0.00 44.97 3.41
7327 10769 1.961277 CCAGGCGTGGTCAACAGAC 60.961 63.158 17.47 0.00 39.30 3.51
7359 10801 1.538075 TCGTCGTTGCAGATCTGTACA 59.462 47.619 23.38 11.43 0.00 2.90
7361 10803 1.810755 AGTCGTCGTTGCAGATCTGTA 59.189 47.619 23.38 17.11 0.00 2.74
7417 10859 1.145377 ATGTACCGATTCCGTGGGC 59.855 57.895 0.00 0.00 0.00 5.36
7418 10860 1.157870 GCATGTACCGATTCCGTGGG 61.158 60.000 0.00 0.00 0.00 4.61
7419 10861 0.179084 AGCATGTACCGATTCCGTGG 60.179 55.000 0.00 0.00 0.00 4.94
7420 10862 1.209128 GAGCATGTACCGATTCCGTG 58.791 55.000 0.00 0.00 0.00 4.94
7422 10864 0.389391 AGGAGCATGTACCGATTCCG 59.611 55.000 0.00 0.00 0.00 4.30
7423 10865 2.622064 AAGGAGCATGTACCGATTCC 57.378 50.000 0.00 0.00 0.00 3.01
7443 10885 5.389859 TGGTAGTACGTAGCTGCTAAAAA 57.610 39.130 11.57 0.00 0.00 1.94
7444 10886 5.163513 GTTGGTAGTACGTAGCTGCTAAAA 58.836 41.667 11.57 0.00 0.00 1.52
7445 10887 4.218200 TGTTGGTAGTACGTAGCTGCTAAA 59.782 41.667 11.57 0.00 0.00 1.85
7446 10888 3.758023 TGTTGGTAGTACGTAGCTGCTAA 59.242 43.478 11.57 2.08 0.00 3.09
7447 10889 3.346315 TGTTGGTAGTACGTAGCTGCTA 58.654 45.455 5.02 5.02 0.00 3.49
7449 10891 2.642139 TGTTGGTAGTACGTAGCTGC 57.358 50.000 0.00 0.00 0.00 5.25
7451 10893 4.578105 GGAGTATGTTGGTAGTACGTAGCT 59.422 45.833 0.00 0.00 0.00 3.32
7452 10894 4.578105 AGGAGTATGTTGGTAGTACGTAGC 59.422 45.833 0.00 0.00 0.00 3.58
7454 10896 5.590259 GGAAGGAGTATGTTGGTAGTACGTA 59.410 44.000 0.00 0.00 0.00 3.57
7455 10897 4.400567 GGAAGGAGTATGTTGGTAGTACGT 59.599 45.833 0.00 0.00 0.00 3.57
7477 12330 2.467946 CTTTTGAGTGCAGCTGCCGG 62.468 60.000 34.64 12.12 41.18 6.13
7479 12332 1.372623 GCTTTTGAGTGCAGCTGCC 60.373 57.895 34.64 24.89 41.18 4.85
7489 12342 4.224433 CTGTATGTGTGCAAGCTTTTGAG 58.776 43.478 0.00 0.00 0.00 3.02
7490 12343 3.004629 CCTGTATGTGTGCAAGCTTTTGA 59.995 43.478 0.00 0.00 0.00 2.69
7491 12344 3.004629 TCCTGTATGTGTGCAAGCTTTTG 59.995 43.478 0.00 0.00 0.00 2.44
7492 12345 3.004734 GTCCTGTATGTGTGCAAGCTTTT 59.995 43.478 0.00 0.00 0.00 2.27
7501 12357 7.792374 AGCTTATTTATGTCCTGTATGTGTG 57.208 36.000 0.00 0.00 0.00 3.82


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.