Multiple sequence alignment - TraesCS5A01G225300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G225300 chr5A 100.000 3344 0 0 1 3344 440946234 440949577 0.000000e+00 6176.0
1 TraesCS5A01G225300 chr5A 78.571 126 20 6 2841 2963 14990729 14990608 3.580000e-10 76.8
2 TraesCS5A01G225300 chr5D 91.338 2182 80 44 222 2339 339711336 339713472 0.000000e+00 2881.0
3 TraesCS5A01G225300 chr5D 87.556 450 23 17 2351 2775 339713523 339713964 1.080000e-134 490.0
4 TraesCS5A01G225300 chr5D 94.074 135 6 2 3199 3332 339714184 339714317 1.570000e-48 204.0
5 TraesCS5A01G225300 chr5D 85.135 74 7 3 2828 2897 501349918 501349991 4.630000e-09 73.1
6 TraesCS5A01G225300 chr5B 89.942 2227 106 56 202 2348 398707675 398709863 0.000000e+00 2763.0
7 TraesCS5A01G225300 chr5B 85.511 421 55 5 2912 3331 398712566 398712981 5.120000e-118 435.0
8 TraesCS5A01G225300 chr5B 88.955 335 15 10 2351 2676 398709904 398710225 8.700000e-106 394.0
9 TraesCS5A01G225300 chr5B 92.398 171 12 1 1 170 646377788 646377958 3.330000e-60 243.0
10 TraesCS5A01G225300 chrUn 93.567 171 9 2 1 171 393604448 393604616 1.540000e-63 254.0
11 TraesCS5A01G225300 chr7D 93.064 173 10 2 1 173 182613475 182613645 5.540000e-63 252.0
12 TraesCS5A01G225300 chr2D 93.529 170 9 2 1 169 8380425 8380593 5.540000e-63 252.0
13 TraesCS5A01G225300 chr2D 93.491 169 11 0 1 169 624783103 624783271 5.540000e-63 252.0
14 TraesCS5A01G225300 chr2D 91.429 175 14 1 1 175 492033758 492033931 4.310000e-59 239.0
15 TraesCS5A01G225300 chr2D 75.123 406 77 19 1293 1691 59452529 59452141 5.740000e-38 169.0
16 TraesCS5A01G225300 chr2D 82.432 74 9 3 2827 2896 8140255 8140328 1.000000e-05 62.1
17 TraesCS5A01G225300 chr2A 92.135 178 13 1 1 178 98897582 98897406 1.990000e-62 250.0
18 TraesCS5A01G225300 chr2A 76.368 402 72 18 1297 1691 58550332 58549947 9.470000e-46 195.0
19 TraesCS5A01G225300 chr2B 92.857 168 12 0 1 168 74196924 74196757 9.270000e-61 244.0
20 TraesCS5A01G225300 chr2B 77.778 126 20 8 2842 2963 294203125 294203246 1.660000e-08 71.3
21 TraesCS5A01G225300 chr2B 87.500 56 7 0 2842 2897 776707411 776707466 7.740000e-07 65.8
22 TraesCS5A01G225300 chr3B 92.353 170 13 0 1 170 779369058 779368889 3.330000e-60 243.0
23 TraesCS5A01G225300 chr4A 86.486 74 6 3 2828 2897 185434149 185434222 9.950000e-11 78.7
24 TraesCS5A01G225300 chr4D 89.286 56 6 0 2842 2897 20280475 20280420 1.660000e-08 71.3
25 TraesCS5A01G225300 chr4D 88.462 52 6 0 2849 2900 433701486 433701435 2.790000e-06 63.9
26 TraesCS5A01G225300 chr3D 87.500 56 6 1 2842 2897 125505875 125505929 2.790000e-06 63.9


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G225300 chr5A 440946234 440949577 3343 False 6176.000000 6176 100.000000 1 3344 1 chr5A.!!$F1 3343
1 TraesCS5A01G225300 chr5D 339711336 339714317 2981 False 1191.666667 2881 90.989333 222 3332 3 chr5D.!!$F2 3110
2 TraesCS5A01G225300 chr5B 398707675 398712981 5306 False 1197.333333 2763 88.136000 202 3331 3 chr5B.!!$F2 3129

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
866 938 0.103208 CATCTCTACGTGCCCAGACC 59.897 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2514 2672 0.035152 TCAGGCACAAATCCTCGCAT 60.035 50.0 0.0 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.921834 GCTTCGGTGAAGGAGGAG 57.078 61.111 8.49 0.00 39.76 3.69
18 19 1.448717 GCTTCGGTGAAGGAGGAGC 60.449 63.158 8.49 0.00 39.76 4.70
19 20 1.153745 CTTCGGTGAAGGAGGAGCG 60.154 63.158 0.00 0.00 36.16 5.03
20 21 1.595993 CTTCGGTGAAGGAGGAGCGA 61.596 60.000 0.00 0.00 40.11 4.93
21 22 0.970937 TTCGGTGAAGGAGGAGCGAT 60.971 55.000 0.00 0.00 41.31 4.58
22 23 1.227089 CGGTGAAGGAGGAGCGATG 60.227 63.158 0.00 0.00 35.10 3.84
23 24 1.667154 CGGTGAAGGAGGAGCGATGA 61.667 60.000 0.00 0.00 35.10 2.92
24 25 0.179097 GGTGAAGGAGGAGCGATGAC 60.179 60.000 0.00 0.00 0.00 3.06
25 26 0.532573 GTGAAGGAGGAGCGATGACA 59.467 55.000 0.00 0.00 0.00 3.58
26 27 0.820226 TGAAGGAGGAGCGATGACAG 59.180 55.000 0.00 0.00 0.00 3.51
27 28 0.529555 GAAGGAGGAGCGATGACAGC 60.530 60.000 0.00 0.00 0.00 4.40
28 29 2.279120 GGAGGAGCGATGACAGCG 60.279 66.667 9.11 9.11 40.04 5.18
29 30 2.279120 GAGGAGCGATGACAGCGG 60.279 66.667 15.74 0.00 40.04 5.52
30 31 4.521062 AGGAGCGATGACAGCGGC 62.521 66.667 15.74 7.30 40.04 6.53
37 38 4.742201 ATGACAGCGGCGCGTCTT 62.742 61.111 36.37 31.42 34.86 3.01
48 49 3.546397 GCGTCTTCGGCTCGCTTC 61.546 66.667 0.00 0.00 45.29 3.86
49 50 2.126463 CGTCTTCGGCTCGCTTCA 60.126 61.111 0.00 0.00 0.00 3.02
50 51 2.155194 CGTCTTCGGCTCGCTTCAG 61.155 63.158 0.00 0.00 0.00 3.02
51 52 1.080434 GTCTTCGGCTCGCTTCAGT 60.080 57.895 0.00 0.00 0.00 3.41
52 53 1.080501 TCTTCGGCTCGCTTCAGTG 60.081 57.895 0.00 0.00 0.00 3.66
53 54 1.373497 CTTCGGCTCGCTTCAGTGT 60.373 57.895 0.00 0.00 0.00 3.55
54 55 0.946221 CTTCGGCTCGCTTCAGTGTT 60.946 55.000 0.00 0.00 0.00 3.32
55 56 0.531974 TTCGGCTCGCTTCAGTGTTT 60.532 50.000 0.00 0.00 0.00 2.83
56 57 1.205064 CGGCTCGCTTCAGTGTTTG 59.795 57.895 0.00 0.00 0.00 2.93
57 58 1.498865 CGGCTCGCTTCAGTGTTTGT 61.499 55.000 0.00 0.00 0.00 2.83
58 59 1.508632 GGCTCGCTTCAGTGTTTGTA 58.491 50.000 0.00 0.00 0.00 2.41
59 60 1.461127 GGCTCGCTTCAGTGTTTGTAG 59.539 52.381 0.00 0.00 0.00 2.74
60 61 2.135933 GCTCGCTTCAGTGTTTGTAGT 58.864 47.619 0.00 0.00 0.00 2.73
61 62 2.155924 GCTCGCTTCAGTGTTTGTAGTC 59.844 50.000 0.00 0.00 0.00 2.59
62 63 2.390938 TCGCTTCAGTGTTTGTAGTCG 58.609 47.619 0.00 0.00 0.00 4.18
63 64 2.124903 CGCTTCAGTGTTTGTAGTCGT 58.875 47.619 0.00 0.00 0.00 4.34
64 65 2.153247 CGCTTCAGTGTTTGTAGTCGTC 59.847 50.000 0.00 0.00 0.00 4.20
65 66 2.153247 GCTTCAGTGTTTGTAGTCGTCG 59.847 50.000 0.00 0.00 0.00 5.12
66 67 1.762419 TCAGTGTTTGTAGTCGTCGC 58.238 50.000 0.00 0.00 0.00 5.19
67 68 1.335810 TCAGTGTTTGTAGTCGTCGCT 59.664 47.619 0.00 0.00 0.00 4.93
68 69 2.549329 TCAGTGTTTGTAGTCGTCGCTA 59.451 45.455 0.00 0.00 0.00 4.26
69 70 2.909244 CAGTGTTTGTAGTCGTCGCTAG 59.091 50.000 0.00 0.00 0.00 3.42
70 71 2.095364 AGTGTTTGTAGTCGTCGCTAGG 60.095 50.000 0.00 0.00 0.00 3.02
71 72 1.881973 TGTTTGTAGTCGTCGCTAGGT 59.118 47.619 0.00 0.00 0.00 3.08
72 73 2.248487 GTTTGTAGTCGTCGCTAGGTG 58.752 52.381 0.00 0.00 0.00 4.00
73 74 0.806868 TTGTAGTCGTCGCTAGGTGG 59.193 55.000 0.00 0.00 0.00 4.61
74 75 0.321919 TGTAGTCGTCGCTAGGTGGT 60.322 55.000 0.00 0.00 0.00 4.16
75 76 0.376502 GTAGTCGTCGCTAGGTGGTC 59.623 60.000 0.00 0.00 0.00 4.02
76 77 0.251354 TAGTCGTCGCTAGGTGGTCT 59.749 55.000 0.00 0.00 0.00 3.85
77 78 0.251354 AGTCGTCGCTAGGTGGTCTA 59.749 55.000 0.00 0.00 0.00 2.59
78 79 0.376502 GTCGTCGCTAGGTGGTCTAC 59.623 60.000 0.00 0.00 0.00 2.59
79 80 1.086067 TCGTCGCTAGGTGGTCTACG 61.086 60.000 0.00 0.00 0.00 3.51
80 81 1.726265 GTCGCTAGGTGGTCTACGG 59.274 63.158 0.00 0.00 0.00 4.02
81 82 0.745845 GTCGCTAGGTGGTCTACGGA 60.746 60.000 0.00 0.00 0.00 4.69
82 83 0.182061 TCGCTAGGTGGTCTACGGAT 59.818 55.000 0.00 0.00 0.00 4.18
83 84 0.592148 CGCTAGGTGGTCTACGGATC 59.408 60.000 0.00 0.00 0.00 3.36
84 85 1.814634 CGCTAGGTGGTCTACGGATCT 60.815 57.143 0.00 0.00 0.00 2.75
85 86 1.609555 GCTAGGTGGTCTACGGATCTG 59.390 57.143 0.00 0.00 0.00 2.90
86 87 2.231529 CTAGGTGGTCTACGGATCTGG 58.768 57.143 6.47 0.00 0.00 3.86
87 88 0.629596 AGGTGGTCTACGGATCTGGA 59.370 55.000 6.47 0.00 0.00 3.86
88 89 1.218196 AGGTGGTCTACGGATCTGGAT 59.782 52.381 6.47 0.00 0.00 3.41
89 90 1.341531 GGTGGTCTACGGATCTGGATG 59.658 57.143 6.47 0.00 0.00 3.51
90 91 2.032620 GTGGTCTACGGATCTGGATGT 58.967 52.381 6.47 0.00 0.00 3.06
91 92 3.220110 GTGGTCTACGGATCTGGATGTA 58.780 50.000 6.47 0.00 0.00 2.29
92 93 3.635373 GTGGTCTACGGATCTGGATGTAA 59.365 47.826 6.47 0.00 0.00 2.41
93 94 4.281182 GTGGTCTACGGATCTGGATGTAAT 59.719 45.833 6.47 0.00 0.00 1.89
94 95 4.899457 TGGTCTACGGATCTGGATGTAATT 59.101 41.667 6.47 0.00 0.00 1.40
95 96 6.015688 GTGGTCTACGGATCTGGATGTAATTA 60.016 42.308 6.47 0.00 0.00 1.40
96 97 6.724441 TGGTCTACGGATCTGGATGTAATTAT 59.276 38.462 6.47 0.00 0.00 1.28
97 98 7.234782 TGGTCTACGGATCTGGATGTAATTATT 59.765 37.037 6.47 0.00 0.00 1.40
98 99 8.746530 GGTCTACGGATCTGGATGTAATTATTA 58.253 37.037 6.47 0.00 0.00 0.98
123 124 8.853469 ATTATTTCTAGTGTTCGCTGTACTAC 57.147 34.615 0.00 0.00 0.00 2.73
124 125 4.691860 TTCTAGTGTTCGCTGTACTACC 57.308 45.455 0.00 0.00 0.00 3.18
125 126 3.678289 TCTAGTGTTCGCTGTACTACCA 58.322 45.455 0.00 0.00 0.00 3.25
126 127 4.267536 TCTAGTGTTCGCTGTACTACCAT 58.732 43.478 0.00 0.00 0.00 3.55
127 128 3.232213 AGTGTTCGCTGTACTACCATG 57.768 47.619 0.00 0.00 0.00 3.66
128 129 2.561419 AGTGTTCGCTGTACTACCATGT 59.439 45.455 0.00 0.00 0.00 3.21
129 130 3.006537 AGTGTTCGCTGTACTACCATGTT 59.993 43.478 0.00 0.00 0.00 2.71
130 131 3.744426 GTGTTCGCTGTACTACCATGTTT 59.256 43.478 0.00 0.00 0.00 2.83
131 132 3.743911 TGTTCGCTGTACTACCATGTTTG 59.256 43.478 0.00 0.00 0.00 2.93
132 133 3.945981 TCGCTGTACTACCATGTTTGA 57.054 42.857 0.00 0.00 0.00 2.69
133 134 4.260139 TCGCTGTACTACCATGTTTGAA 57.740 40.909 0.00 0.00 0.00 2.69
134 135 4.242475 TCGCTGTACTACCATGTTTGAAG 58.758 43.478 0.00 0.00 0.00 3.02
135 136 4.021807 TCGCTGTACTACCATGTTTGAAGA 60.022 41.667 0.00 0.00 0.00 2.87
136 137 4.870426 CGCTGTACTACCATGTTTGAAGAT 59.130 41.667 0.00 0.00 0.00 2.40
137 138 5.220472 CGCTGTACTACCATGTTTGAAGATG 60.220 44.000 0.00 0.00 0.00 2.90
138 139 5.874810 GCTGTACTACCATGTTTGAAGATGA 59.125 40.000 2.74 0.00 31.83 2.92
139 140 6.371548 GCTGTACTACCATGTTTGAAGATGAA 59.628 38.462 2.74 0.00 31.83 2.57
140 141 7.066284 GCTGTACTACCATGTTTGAAGATGAAT 59.934 37.037 2.74 0.00 31.83 2.57
141 142 9.599866 CTGTACTACCATGTTTGAAGATGAATA 57.400 33.333 2.74 0.00 31.83 1.75
142 143 9.599866 TGTACTACCATGTTTGAAGATGAATAG 57.400 33.333 2.74 6.53 31.83 1.73
143 144 9.817809 GTACTACCATGTTTGAAGATGAATAGA 57.182 33.333 13.82 2.67 31.83 1.98
145 146 9.911788 ACTACCATGTTTGAAGATGAATAGATT 57.088 29.630 13.82 0.00 31.83 2.40
147 148 8.812513 ACCATGTTTGAAGATGAATAGATTGA 57.187 30.769 2.74 0.00 31.83 2.57
148 149 9.246670 ACCATGTTTGAAGATGAATAGATTGAA 57.753 29.630 2.74 0.00 31.83 2.69
192 193 9.981114 AAAACAAACATAGGGAAAACATAGAAG 57.019 29.630 0.00 0.00 0.00 2.85
193 194 7.703058 ACAAACATAGGGAAAACATAGAAGG 57.297 36.000 0.00 0.00 0.00 3.46
194 195 7.466804 ACAAACATAGGGAAAACATAGAAGGA 58.533 34.615 0.00 0.00 0.00 3.36
195 196 7.947890 ACAAACATAGGGAAAACATAGAAGGAA 59.052 33.333 0.00 0.00 0.00 3.36
196 197 7.939784 AACATAGGGAAAACATAGAAGGAAC 57.060 36.000 0.00 0.00 0.00 3.62
197 198 7.027874 ACATAGGGAAAACATAGAAGGAACA 57.972 36.000 0.00 0.00 0.00 3.18
198 199 7.466804 ACATAGGGAAAACATAGAAGGAACAA 58.533 34.615 0.00 0.00 0.00 2.83
199 200 7.611855 ACATAGGGAAAACATAGAAGGAACAAG 59.388 37.037 0.00 0.00 0.00 3.16
200 201 5.325239 AGGGAAAACATAGAAGGAACAAGG 58.675 41.667 0.00 0.00 0.00 3.61
238 239 1.069823 CTCCTCGGTCAAGGGATCATG 59.930 57.143 0.00 0.00 37.02 3.07
243 244 2.837591 TCGGTCAAGGGATCATGAAAGA 59.162 45.455 0.00 0.00 0.00 2.52
250 251 2.092538 AGGGATCATGAAAGAGCAGTGG 60.093 50.000 0.00 0.00 0.00 4.00
279 280 5.070685 GGAAGGTCAACAGTGGTCTAAATT 58.929 41.667 0.00 0.00 0.00 1.82
295 296 6.368791 GGTCTAAATTGAATTGGCAAGGAAAC 59.631 38.462 5.96 0.00 0.00 2.78
297 298 7.116805 GTCTAAATTGAATTGGCAAGGAAACTG 59.883 37.037 5.96 0.00 42.68 3.16
298 299 2.818130 TGAATTGGCAAGGAAACTGC 57.182 45.000 5.96 0.00 42.68 4.40
299 300 1.000385 TGAATTGGCAAGGAAACTGCG 60.000 47.619 5.96 0.00 42.68 5.18
302 303 1.040339 TTGGCAAGGAAACTGCGGTT 61.040 50.000 4.68 4.68 42.68 4.44
352 353 3.146847 GGAAACCAGTGGTTAAGAGGTG 58.853 50.000 27.62 0.00 46.20 4.00
423 424 2.908073 GCCAGGGTGTTTCGTGCAG 61.908 63.158 0.00 0.00 0.00 4.41
442 443 1.937546 GAGCAAATGCCCGGTCCAAG 61.938 60.000 0.00 0.00 43.38 3.61
443 444 2.275380 GCAAATGCCCGGTCCAAGT 61.275 57.895 0.00 0.00 34.31 3.16
444 445 1.815817 GCAAATGCCCGGTCCAAGTT 61.816 55.000 0.00 0.00 34.31 2.66
445 446 0.243636 CAAATGCCCGGTCCAAGTTC 59.756 55.000 0.00 0.00 0.00 3.01
446 447 0.178975 AAATGCCCGGTCCAAGTTCA 60.179 50.000 0.00 0.00 0.00 3.18
456 467 1.031571 TCCAAGTTCATGGCCGCATC 61.032 55.000 0.00 0.00 40.46 3.91
458 469 1.754234 AAGTTCATGGCCGCATCCC 60.754 57.895 0.00 0.00 0.00 3.85
470 481 1.396996 CCGCATCCCTTAAACGTTGAG 59.603 52.381 0.00 3.05 0.00 3.02
491 502 1.203994 CGGGTATAGTAATCGGCCCAG 59.796 57.143 0.00 0.00 35.99 4.45
543 567 1.806247 GCAACCTGGAAGCAACAAACC 60.806 52.381 0.00 0.00 0.00 3.27
588 617 3.787001 CGGGCCACTCTTCCTCCC 61.787 72.222 4.39 0.00 0.00 4.30
601 630 3.339093 CTCCCCCACTCCCAACCC 61.339 72.222 0.00 0.00 0.00 4.11
637 666 1.909302 TCACATTTGTCCCCTCTCCTC 59.091 52.381 0.00 0.00 0.00 3.71
641 670 0.614979 TTTGTCCCCTCTCCTCTCGG 60.615 60.000 0.00 0.00 0.00 4.63
687 716 2.284112 GTCCACCCGACCCACCTA 60.284 66.667 0.00 0.00 35.23 3.08
724 776 2.743928 GTGCCACGCCTCTCCTTG 60.744 66.667 0.00 0.00 0.00 3.61
728 780 2.266055 CACGCCTCTCCTTGTCCC 59.734 66.667 0.00 0.00 0.00 4.46
729 781 3.382832 ACGCCTCTCCTTGTCCCG 61.383 66.667 0.00 0.00 0.00 5.14
733 785 4.069232 CTCTCCTTGTCCCGCGCA 62.069 66.667 8.75 0.00 0.00 6.09
844 916 4.067913 CAAACCCATGTGCCCGCC 62.068 66.667 0.00 0.00 0.00 6.13
866 938 0.103208 CATCTCTACGTGCCCAGACC 59.897 60.000 0.00 0.00 0.00 3.85
867 939 1.043673 ATCTCTACGTGCCCAGACCC 61.044 60.000 0.00 0.00 0.00 4.46
868 940 1.982395 CTCTACGTGCCCAGACCCA 60.982 63.158 0.00 0.00 0.00 4.51
869 941 2.227089 CTCTACGTGCCCAGACCCAC 62.227 65.000 0.00 0.00 0.00 4.61
870 942 3.310860 CTACGTGCCCAGACCCACC 62.311 68.421 0.00 0.00 0.00 4.61
871 943 3.839046 TACGTGCCCAGACCCACCT 62.839 63.158 0.00 0.00 0.00 4.00
872 944 2.444004 TACGTGCCCAGACCCACCTA 62.444 60.000 0.00 0.00 0.00 3.08
873 945 2.990479 GTGCCCAGACCCACCTAG 59.010 66.667 0.00 0.00 0.00 3.02
874 946 1.918800 GTGCCCAGACCCACCTAGT 60.919 63.158 0.00 0.00 0.00 2.57
875 947 1.151899 TGCCCAGACCCACCTAGTT 60.152 57.895 0.00 0.00 0.00 2.24
876 948 0.117541 TGCCCAGACCCACCTAGTTA 59.882 55.000 0.00 0.00 0.00 2.24
877 949 1.282382 GCCCAGACCCACCTAGTTAA 58.718 55.000 0.00 0.00 0.00 2.01
878 950 1.631898 GCCCAGACCCACCTAGTTAAA 59.368 52.381 0.00 0.00 0.00 1.52
879 951 2.355818 GCCCAGACCCACCTAGTTAAAG 60.356 54.545 0.00 0.00 0.00 1.85
880 952 3.178865 CCCAGACCCACCTAGTTAAAGA 58.821 50.000 0.00 0.00 0.00 2.52
881 953 3.780850 CCCAGACCCACCTAGTTAAAGAT 59.219 47.826 0.00 0.00 0.00 2.40
894 972 3.131577 AGTTAAAGATCCCATGACGCGTA 59.868 43.478 13.97 0.41 0.00 4.42
897 975 1.660575 GATCCCATGACGCGTACCG 60.661 63.158 13.97 2.46 44.21 4.02
914 994 1.078285 CGCCCCCGCCTAGTTAAAA 60.078 57.895 0.00 0.00 0.00 1.52
915 995 1.093496 CGCCCCCGCCTAGTTAAAAG 61.093 60.000 0.00 0.00 0.00 2.27
916 996 0.253894 GCCCCCGCCTAGTTAAAAGA 59.746 55.000 0.00 0.00 0.00 2.52
917 997 1.133884 GCCCCCGCCTAGTTAAAAGAT 60.134 52.381 0.00 0.00 0.00 2.40
918 998 2.847441 CCCCCGCCTAGTTAAAAGATC 58.153 52.381 0.00 0.00 0.00 2.75
919 999 2.486727 CCCCCGCCTAGTTAAAAGATCC 60.487 54.545 0.00 0.00 0.00 3.36
920 1000 2.486727 CCCCGCCTAGTTAAAAGATCCC 60.487 54.545 0.00 0.00 0.00 3.85
921 1001 2.171870 CCCGCCTAGTTAAAAGATCCCA 59.828 50.000 0.00 0.00 0.00 4.37
922 1002 3.181443 CCCGCCTAGTTAAAAGATCCCAT 60.181 47.826 0.00 0.00 0.00 4.00
924 1004 4.995487 CCGCCTAGTTAAAAGATCCCATAC 59.005 45.833 0.00 0.00 0.00 2.39
925 1005 5.454187 CCGCCTAGTTAAAAGATCCCATACA 60.454 44.000 0.00 0.00 0.00 2.29
926 1006 6.053005 CGCCTAGTTAAAAGATCCCATACAA 58.947 40.000 0.00 0.00 0.00 2.41
927 1007 6.202954 CGCCTAGTTAAAAGATCCCATACAAG 59.797 42.308 0.00 0.00 0.00 3.16
928 1008 6.017026 GCCTAGTTAAAAGATCCCATACAAGC 60.017 42.308 0.00 0.00 0.00 4.01
929 1009 6.486993 CCTAGTTAAAAGATCCCATACAAGCC 59.513 42.308 0.00 0.00 0.00 4.35
955 1038 1.372087 GCAGCAGTGGCCATAGTGAC 61.372 60.000 9.72 4.07 42.56 3.67
956 1039 0.251354 CAGCAGTGGCCATAGTGACT 59.749 55.000 9.72 6.30 42.56 3.41
957 1040 1.482182 CAGCAGTGGCCATAGTGACTA 59.518 52.381 9.72 0.00 42.56 2.59
958 1041 1.759445 AGCAGTGGCCATAGTGACTAG 59.241 52.381 9.72 0.00 42.56 2.57
980 1063 6.679327 AGTAGTGAACTTCCAAAACAAGTC 57.321 37.500 0.00 0.00 33.35 3.01
981 1064 4.616181 AGTGAACTTCCAAAACAAGTCG 57.384 40.909 0.00 0.00 32.71 4.18
982 1065 3.377172 AGTGAACTTCCAAAACAAGTCGG 59.623 43.478 0.00 0.00 32.71 4.79
1031 1144 3.462678 GGAGGGCGAGGTGAGGAC 61.463 72.222 0.00 0.00 0.00 3.85
1100 1213 0.171903 TTCGCCAAGGTCTACTACGC 59.828 55.000 0.00 0.00 0.00 4.42
1443 1556 2.125350 CCCGAGAACCTGCTGCTC 60.125 66.667 0.00 0.00 0.00 4.26
1809 1922 1.596477 GGAGATCATGCTCACGCCC 60.596 63.158 0.00 0.00 36.62 6.13
1962 2075 2.874086 CAATGCGTTCCAGCTCATATCA 59.126 45.455 0.00 0.00 38.13 2.15
2067 2180 0.250124 CCACCGTGTTCCACAAGCTA 60.250 55.000 0.00 0.00 33.40 3.32
2075 2188 1.272769 GTTCCACAAGCTAGAGTCCGT 59.727 52.381 0.00 0.00 0.00 4.69
2349 2462 2.322081 CGCCGTCGTTTGACCCAAT 61.322 57.895 0.00 0.00 42.37 3.16
2385 2537 0.535335 GTGTAGGACTTGCCCGATCA 59.465 55.000 0.00 0.00 37.37 2.92
2473 2629 1.488261 GCTATGGCTCGGTGTAACGC 61.488 60.000 0.00 0.00 34.31 4.84
2498 2656 1.346068 AGCAACTTGAGGAGAGGTGTC 59.654 52.381 0.00 0.00 34.32 3.67
2506 2664 3.892284 TGAGGAGAGGTGTCTGTAGATC 58.108 50.000 0.00 0.00 30.97 2.75
2514 2672 4.524053 AGGTGTCTGTAGATCACGATACA 58.476 43.478 0.00 0.00 33.51 2.29
2537 2695 1.399440 CGAGGATTTGTGCCTGATGTG 59.601 52.381 0.00 0.00 35.44 3.21
2538 2696 2.440409 GAGGATTTGTGCCTGATGTGT 58.560 47.619 0.00 0.00 35.44 3.72
2539 2697 3.609853 GAGGATTTGTGCCTGATGTGTA 58.390 45.455 0.00 0.00 35.44 2.90
2540 2698 3.347216 AGGATTTGTGCCTGATGTGTAC 58.653 45.455 0.00 0.00 33.59 2.90
2541 2699 2.095853 GGATTTGTGCCTGATGTGTACG 59.904 50.000 0.00 0.00 0.00 3.67
2575 2733 6.506984 GCGATCGATGTGTACATATATGCAAG 60.507 42.308 21.57 2.58 36.57 4.01
2576 2734 6.747280 CGATCGATGTGTACATATATGCAAGA 59.253 38.462 10.26 7.18 36.57 3.02
2577 2735 7.044445 CGATCGATGTGTACATATATGCAAGAG 60.044 40.741 10.26 0.00 36.57 2.85
2578 2736 6.981722 TCGATGTGTACATATATGCAAGAGT 58.018 36.000 12.79 0.00 36.57 3.24
2619 2777 1.547372 CAGCTTTTGTTCCCTGGGATG 59.453 52.381 17.93 5.22 0.00 3.51
2620 2778 1.428912 AGCTTTTGTTCCCTGGGATGA 59.571 47.619 17.93 2.87 0.00 2.92
2721 2916 3.758554 GCCTTTTTGTTCTGCTATGGAGA 59.241 43.478 0.00 0.00 0.00 3.71
2722 2917 4.400567 GCCTTTTTGTTCTGCTATGGAGAT 59.599 41.667 0.00 0.00 0.00 2.75
2724 2919 5.220739 CCTTTTTGTTCTGCTATGGAGATCG 60.221 44.000 0.00 0.00 0.00 3.69
2747 2942 7.101700 TCGTCTATGATTATCGAGCTTACCTA 58.898 38.462 0.00 0.00 0.00 3.08
2800 5063 8.543862 ACTTACAGCAAGTAACATAACTTACC 57.456 34.615 0.00 0.00 45.93 2.85
2801 5064 8.152246 ACTTACAGCAAGTAACATAACTTACCA 58.848 33.333 0.00 0.00 45.93 3.25
2815 5078 8.082242 ACATAACTTACCAGAAGACAAATTTGC 58.918 33.333 18.12 10.76 0.00 3.68
2817 5080 4.892934 ACTTACCAGAAGACAAATTTGCCA 59.107 37.500 18.12 0.00 0.00 4.92
2818 5081 5.539955 ACTTACCAGAAGACAAATTTGCCAT 59.460 36.000 18.12 0.00 0.00 4.40
2820 5083 5.294734 ACCAGAAGACAAATTTGCCATTT 57.705 34.783 18.12 7.33 0.00 2.32
2822 5085 7.008021 ACCAGAAGACAAATTTGCCATTTAT 57.992 32.000 18.12 2.55 0.00 1.40
2823 5086 8.133024 ACCAGAAGACAAATTTGCCATTTATA 57.867 30.769 18.12 0.00 0.00 0.98
2824 5087 8.253113 ACCAGAAGACAAATTTGCCATTTATAG 58.747 33.333 18.12 2.88 0.00 1.31
2825 5088 7.223387 CCAGAAGACAAATTTGCCATTTATAGC 59.777 37.037 18.12 0.00 0.00 2.97
2826 5089 7.760794 CAGAAGACAAATTTGCCATTTATAGCA 59.239 33.333 18.12 0.00 37.18 3.49
2827 5090 8.313292 AGAAGACAAATTTGCCATTTATAGCAA 58.687 29.630 18.12 0.00 46.74 3.91
2840 5103 9.965824 GCCATTTATAGCAAGTAACATAATTGT 57.034 29.630 0.00 0.00 36.25 2.71
2849 5112 9.373603 AGCAAGTAACATAATTGTCATTACGTA 57.626 29.630 0.00 0.00 36.25 3.57
2851 5114 9.632969 CAAGTAACATAATTGTCATTACGTAGC 57.367 33.333 0.00 0.00 34.06 3.58
2852 5115 8.057812 AGTAACATAATTGTCATTACGTAGCG 57.942 34.615 0.00 0.00 34.06 4.26
2853 5116 5.324739 ACATAATTGTCATTACGTAGCGC 57.675 39.130 0.00 0.00 0.00 5.92
2858 5121 5.824243 ATTGTCATTACGTAGCGCTTATC 57.176 39.130 18.68 6.02 0.00 1.75
2859 5122 4.295857 TGTCATTACGTAGCGCTTATCA 57.704 40.909 18.68 0.00 0.00 2.15
2861 5124 4.738252 TGTCATTACGTAGCGCTTATCAAG 59.262 41.667 18.68 1.39 0.00 3.02
2866 5159 2.597305 ACGTAGCGCTTATCAAGAAACG 59.403 45.455 18.68 18.73 0.00 3.60
2878 5171 7.095774 GCTTATCAAGAAACGTTGAGTCTACAA 60.096 37.037 0.00 0.00 39.78 2.41
2886 5179 8.086522 AGAAACGTTGAGTCTACAAGCTAATAA 58.913 33.333 0.00 0.00 0.00 1.40
2890 5183 7.119997 CGTTGAGTCTACAAGCTAATAAATGC 58.880 38.462 5.57 0.00 0.00 3.56
2891 5184 7.201522 CGTTGAGTCTACAAGCTAATAAATGCA 60.202 37.037 5.57 0.00 0.00 3.96
2893 5186 7.974675 TGAGTCTACAAGCTAATAAATGCAAC 58.025 34.615 0.00 0.00 0.00 4.17
2894 5187 7.065803 TGAGTCTACAAGCTAATAAATGCAACC 59.934 37.037 0.00 0.00 0.00 3.77
2896 5189 7.557719 AGTCTACAAGCTAATAAATGCAACCAT 59.442 33.333 0.00 0.00 0.00 3.55
2898 5191 6.780457 ACAAGCTAATAAATGCAACCATCT 57.220 33.333 0.00 0.00 0.00 2.90
2899 5192 7.880160 ACAAGCTAATAAATGCAACCATCTA 57.120 32.000 0.00 0.00 0.00 1.98
2900 5193 7.707104 ACAAGCTAATAAATGCAACCATCTAC 58.293 34.615 0.00 0.00 0.00 2.59
2903 5196 8.525290 AGCTAATAAATGCAACCATCTACTTT 57.475 30.769 0.00 0.00 0.00 2.66
2904 5197 9.627123 AGCTAATAAATGCAACCATCTACTTTA 57.373 29.630 0.00 0.00 0.00 1.85
2974 5267 7.445945 AGTGTCATATCCATTAGTTAAGGAGC 58.554 38.462 0.00 0.00 34.40 4.70
2977 5270 9.154632 TGTCATATCCATTAGTTAAGGAGCTTA 57.845 33.333 0.00 0.00 34.40 3.09
3001 5294 9.862371 TTAGAATTGCTTTCACAAACAAAAGTA 57.138 25.926 3.37 0.00 36.75 2.24
3002 5295 8.411318 AGAATTGCTTTCACAAACAAAAGTAG 57.589 30.769 3.37 0.00 36.75 2.57
3005 5298 7.810766 TTGCTTTCACAAACAAAAGTAGAAG 57.189 32.000 0.00 0.00 35.41 2.85
3006 5299 7.151999 TGCTTTCACAAACAAAAGTAGAAGA 57.848 32.000 0.00 0.00 35.41 2.87
3019 5312 5.358298 AAGTAGAAGAAAATCACAACGCC 57.642 39.130 0.00 0.00 0.00 5.68
3039 5332 3.444034 GCCTCTACTATCGTGGCATGATA 59.556 47.826 24.06 24.06 42.79 2.15
3050 5343 4.133820 CGTGGCATGATATTTCCCAAGTA 58.866 43.478 0.00 0.00 0.00 2.24
3054 5347 6.096846 GTGGCATGATATTTCCCAAGTACTTT 59.903 38.462 5.07 0.00 0.00 2.66
3057 5350 6.405731 GCATGATATTTCCCAAGTACTTTGCA 60.406 38.462 5.07 0.00 35.37 4.08
3058 5351 7.685155 GCATGATATTTCCCAAGTACTTTGCAT 60.685 37.037 5.07 0.00 35.37 3.96
3061 5354 2.107950 TCCCAAGTACTTTGCATCGG 57.892 50.000 5.07 2.84 35.37 4.18
3091 5384 1.386533 AAGCGATGCCTCATTCTTGG 58.613 50.000 0.00 0.00 0.00 3.61
3093 5386 1.486310 AGCGATGCCTCATTCTTGGTA 59.514 47.619 0.00 0.00 0.00 3.25
3097 5390 4.129380 CGATGCCTCATTCTTGGTATTGA 58.871 43.478 0.00 0.00 33.42 2.57
3100 5393 5.178096 TGCCTCATTCTTGGTATTGAAGA 57.822 39.130 0.00 0.00 0.00 2.87
3112 5405 8.138074 TCTTGGTATTGAAGAGAATGATAGACG 58.862 37.037 0.00 0.00 0.00 4.18
3118 5411 4.887655 TGAAGAGAATGATAGACGGTAGCA 59.112 41.667 0.00 0.00 0.00 3.49
3134 5427 2.363306 AGCATGGACTTGTGTTGGAA 57.637 45.000 0.00 0.00 0.00 3.53
3135 5428 2.880443 AGCATGGACTTGTGTTGGAAT 58.120 42.857 0.00 0.00 0.00 3.01
3138 5431 3.426159 GCATGGACTTGTGTTGGAATACG 60.426 47.826 0.00 0.00 0.00 3.06
3141 5434 2.415512 GGACTTGTGTTGGAATACGCTC 59.584 50.000 0.00 0.00 0.00 5.03
3142 5435 2.415512 GACTTGTGTTGGAATACGCTCC 59.584 50.000 0.00 0.00 35.88 4.70
3149 5442 1.948104 TGGAATACGCTCCCATTTCG 58.052 50.000 0.00 0.00 34.22 3.46
3154 5447 0.248012 TACGCTCCCATTTCGCTCAA 59.752 50.000 0.00 0.00 0.00 3.02
3155 5448 1.298859 ACGCTCCCATTTCGCTCAAC 61.299 55.000 0.00 0.00 0.00 3.18
3156 5449 1.425428 GCTCCCATTTCGCTCAACG 59.575 57.895 0.00 0.00 45.62 4.10
3171 5465 4.712763 GCTCAACGAAATTGTCTAACAGG 58.287 43.478 0.00 0.00 39.54 4.00
3175 5469 7.181143 TCAACGAAATTGTCTAACAGGTAAC 57.819 36.000 0.00 0.00 39.54 2.50
3190 5488 9.338622 CTAACAGGTAACCATTAAAATCCTAGG 57.661 37.037 0.82 0.82 37.17 3.02
3192 5490 7.344134 ACAGGTAACCATTAAAATCCTAGGTC 58.656 38.462 9.08 0.00 37.17 3.85
3207 5505 5.907421 TCCTAGGTCTAAAGGTAGAACCAA 58.093 41.667 9.08 0.00 44.10 3.67
3232 5531 2.248248 TGTGGACCTCGATCTTGAAGT 58.752 47.619 0.00 0.00 0.00 3.01
3241 5540 4.118410 CTCGATCTTGAAGTCCAATCCTG 58.882 47.826 0.00 0.00 33.68 3.86
3243 5542 2.496899 TCTTGAAGTCCAATCCTGCC 57.503 50.000 0.00 0.00 33.68 4.85
3318 5617 1.686052 TGAAGATGCCCAACAAACCAC 59.314 47.619 0.00 0.00 0.00 4.16
3332 5631 6.252655 CCAACAAACCACGACTAAAAGAAAAG 59.747 38.462 0.00 0.00 0.00 2.27
3333 5632 6.746745 ACAAACCACGACTAAAAGAAAAGA 57.253 33.333 0.00 0.00 0.00 2.52
3334 5633 7.148355 ACAAACCACGACTAAAAGAAAAGAA 57.852 32.000 0.00 0.00 0.00 2.52
3335 5634 7.248437 ACAAACCACGACTAAAAGAAAAGAAG 58.752 34.615 0.00 0.00 0.00 2.85
3336 5635 6.997239 AACCACGACTAAAAGAAAAGAAGT 57.003 33.333 0.00 0.00 0.00 3.01
3337 5636 6.359480 ACCACGACTAAAAGAAAAGAAGTG 57.641 37.500 0.00 0.00 0.00 3.16
3338 5637 5.205565 CCACGACTAAAAGAAAAGAAGTGC 58.794 41.667 0.00 0.00 0.00 4.40
3339 5638 5.205565 CACGACTAAAAGAAAAGAAGTGCC 58.794 41.667 0.00 0.00 0.00 5.01
3340 5639 4.275196 ACGACTAAAAGAAAAGAAGTGCCC 59.725 41.667 0.00 0.00 0.00 5.36
3341 5640 4.274950 CGACTAAAAGAAAAGAAGTGCCCA 59.725 41.667 0.00 0.00 0.00 5.36
3342 5641 5.220970 CGACTAAAAGAAAAGAAGTGCCCAA 60.221 40.000 0.00 0.00 0.00 4.12
3343 5642 5.902681 ACTAAAAGAAAAGAAGTGCCCAAC 58.097 37.500 0.00 0.00 0.00 3.77
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.448717 GCTCCTCCTTCACCGAAGC 60.449 63.158 0.00 0.00 38.24 3.86
1 2 1.153745 CGCTCCTCCTTCACCGAAG 60.154 63.158 0.00 0.00 39.17 3.79
2 3 0.970937 ATCGCTCCTCCTTCACCGAA 60.971 55.000 0.00 0.00 0.00 4.30
3 4 1.379977 ATCGCTCCTCCTTCACCGA 60.380 57.895 0.00 0.00 0.00 4.69
4 5 1.227089 CATCGCTCCTCCTTCACCG 60.227 63.158 0.00 0.00 0.00 4.94
5 6 0.179097 GTCATCGCTCCTCCTTCACC 60.179 60.000 0.00 0.00 0.00 4.02
6 7 0.532573 TGTCATCGCTCCTCCTTCAC 59.467 55.000 0.00 0.00 0.00 3.18
7 8 0.820226 CTGTCATCGCTCCTCCTTCA 59.180 55.000 0.00 0.00 0.00 3.02
8 9 0.529555 GCTGTCATCGCTCCTCCTTC 60.530 60.000 0.00 0.00 0.00 3.46
9 10 1.519719 GCTGTCATCGCTCCTCCTT 59.480 57.895 0.00 0.00 0.00 3.36
10 11 2.780094 CGCTGTCATCGCTCCTCCT 61.780 63.158 0.00 0.00 0.00 3.69
11 12 2.279120 CGCTGTCATCGCTCCTCC 60.279 66.667 0.00 0.00 0.00 4.30
12 13 2.279120 CCGCTGTCATCGCTCCTC 60.279 66.667 0.00 0.00 0.00 3.71
13 14 4.521062 GCCGCTGTCATCGCTCCT 62.521 66.667 0.00 0.00 0.00 3.69
20 21 4.742201 AAGACGCGCCGCTGTCAT 62.742 61.111 26.60 17.30 35.68 3.06
32 33 2.126463 TGAAGCGAGCCGAAGACG 60.126 61.111 0.00 0.00 39.43 4.18
33 34 1.080434 ACTGAAGCGAGCCGAAGAC 60.080 57.895 0.00 0.00 0.00 3.01
34 35 1.080501 CACTGAAGCGAGCCGAAGA 60.081 57.895 0.00 0.00 0.00 2.87
35 36 0.946221 AACACTGAAGCGAGCCGAAG 60.946 55.000 0.00 0.00 0.00 3.79
36 37 0.531974 AAACACTGAAGCGAGCCGAA 60.532 50.000 0.00 0.00 0.00 4.30
37 38 1.069090 AAACACTGAAGCGAGCCGA 59.931 52.632 0.00 0.00 0.00 5.54
38 39 1.205064 CAAACACTGAAGCGAGCCG 59.795 57.895 0.00 0.00 0.00 5.52
39 40 1.461127 CTACAAACACTGAAGCGAGCC 59.539 52.381 0.00 0.00 0.00 4.70
40 41 2.135933 ACTACAAACACTGAAGCGAGC 58.864 47.619 0.00 0.00 0.00 5.03
41 42 2.405357 CGACTACAAACACTGAAGCGAG 59.595 50.000 0.00 0.00 0.00 5.03
42 43 2.223641 ACGACTACAAACACTGAAGCGA 60.224 45.455 0.00 0.00 0.00 4.93
43 44 2.124903 ACGACTACAAACACTGAAGCG 58.875 47.619 0.00 0.00 0.00 4.68
44 45 2.153247 CGACGACTACAAACACTGAAGC 59.847 50.000 0.00 0.00 0.00 3.86
45 46 2.153247 GCGACGACTACAAACACTGAAG 59.847 50.000 0.00 0.00 0.00 3.02
46 47 2.121786 GCGACGACTACAAACACTGAA 58.878 47.619 0.00 0.00 0.00 3.02
47 48 1.335810 AGCGACGACTACAAACACTGA 59.664 47.619 0.00 0.00 0.00 3.41
48 49 1.767289 AGCGACGACTACAAACACTG 58.233 50.000 0.00 0.00 0.00 3.66
49 50 2.095364 CCTAGCGACGACTACAAACACT 60.095 50.000 0.00 0.00 0.00 3.55
50 51 2.248487 CCTAGCGACGACTACAAACAC 58.752 52.381 0.00 0.00 0.00 3.32
51 52 1.881973 ACCTAGCGACGACTACAAACA 59.118 47.619 0.00 0.00 0.00 2.83
52 53 2.248487 CACCTAGCGACGACTACAAAC 58.752 52.381 0.00 0.00 0.00 2.93
53 54 1.200716 CCACCTAGCGACGACTACAAA 59.799 52.381 0.00 0.00 0.00 2.83
54 55 0.806868 CCACCTAGCGACGACTACAA 59.193 55.000 0.00 0.00 0.00 2.41
55 56 0.321919 ACCACCTAGCGACGACTACA 60.322 55.000 0.00 0.00 0.00 2.74
56 57 0.376502 GACCACCTAGCGACGACTAC 59.623 60.000 0.00 0.00 0.00 2.73
57 58 0.251354 AGACCACCTAGCGACGACTA 59.749 55.000 0.00 0.00 0.00 2.59
58 59 0.251354 TAGACCACCTAGCGACGACT 59.749 55.000 0.00 0.00 0.00 4.18
59 60 0.376502 GTAGACCACCTAGCGACGAC 59.623 60.000 0.00 0.00 0.00 4.34
60 61 1.086067 CGTAGACCACCTAGCGACGA 61.086 60.000 0.00 0.00 0.00 4.20
61 62 1.351012 CGTAGACCACCTAGCGACG 59.649 63.158 0.00 0.00 0.00 5.12
62 63 0.745845 TCCGTAGACCACCTAGCGAC 60.746 60.000 0.00 0.00 0.00 5.19
63 64 0.182061 ATCCGTAGACCACCTAGCGA 59.818 55.000 0.00 0.00 0.00 4.93
64 65 0.592148 GATCCGTAGACCACCTAGCG 59.408 60.000 0.00 0.00 0.00 4.26
65 66 1.609555 CAGATCCGTAGACCACCTAGC 59.390 57.143 0.00 0.00 0.00 3.42
66 67 2.158652 TCCAGATCCGTAGACCACCTAG 60.159 54.545 0.00 0.00 0.00 3.02
67 68 1.848388 TCCAGATCCGTAGACCACCTA 59.152 52.381 0.00 0.00 0.00 3.08
68 69 0.629596 TCCAGATCCGTAGACCACCT 59.370 55.000 0.00 0.00 0.00 4.00
69 70 1.341531 CATCCAGATCCGTAGACCACC 59.658 57.143 0.00 0.00 0.00 4.61
70 71 2.032620 ACATCCAGATCCGTAGACCAC 58.967 52.381 0.00 0.00 0.00 4.16
71 72 2.454336 ACATCCAGATCCGTAGACCA 57.546 50.000 0.00 0.00 0.00 4.02
72 73 5.470047 AATTACATCCAGATCCGTAGACC 57.530 43.478 0.00 0.00 0.00 3.85
97 98 9.941664 GTAGTACAGCGAACACTAGAAATAATA 57.058 33.333 0.00 0.00 0.00 0.98
98 99 7.919621 GGTAGTACAGCGAACACTAGAAATAAT 59.080 37.037 2.06 0.00 0.00 1.28
99 100 7.094248 TGGTAGTACAGCGAACACTAGAAATAA 60.094 37.037 2.06 0.00 0.00 1.40
100 101 6.375174 TGGTAGTACAGCGAACACTAGAAATA 59.625 38.462 2.06 0.00 0.00 1.40
101 102 5.184479 TGGTAGTACAGCGAACACTAGAAAT 59.816 40.000 2.06 0.00 0.00 2.17
102 103 4.520111 TGGTAGTACAGCGAACACTAGAAA 59.480 41.667 2.06 0.00 0.00 2.52
103 104 4.074259 TGGTAGTACAGCGAACACTAGAA 58.926 43.478 2.06 0.00 0.00 2.10
104 105 3.678289 TGGTAGTACAGCGAACACTAGA 58.322 45.455 2.06 0.00 0.00 2.43
105 106 4.142447 ACATGGTAGTACAGCGAACACTAG 60.142 45.833 2.06 0.00 0.00 2.57
106 107 3.760151 ACATGGTAGTACAGCGAACACTA 59.240 43.478 2.06 0.00 0.00 2.74
107 108 2.561419 ACATGGTAGTACAGCGAACACT 59.439 45.455 2.06 0.00 0.00 3.55
108 109 2.955614 ACATGGTAGTACAGCGAACAC 58.044 47.619 2.06 0.00 0.00 3.32
109 110 3.671008 AACATGGTAGTACAGCGAACA 57.329 42.857 2.06 0.00 0.00 3.18
110 111 3.991773 TCAAACATGGTAGTACAGCGAAC 59.008 43.478 2.06 0.00 0.00 3.95
111 112 4.260139 TCAAACATGGTAGTACAGCGAA 57.740 40.909 2.06 0.00 0.00 4.70
112 113 3.945981 TCAAACATGGTAGTACAGCGA 57.054 42.857 2.06 0.00 0.00 4.93
113 114 4.242475 TCTTCAAACATGGTAGTACAGCG 58.758 43.478 2.06 0.00 0.00 5.18
114 115 5.874810 TCATCTTCAAACATGGTAGTACAGC 59.125 40.000 2.06 0.00 0.00 4.40
115 116 7.905604 TTCATCTTCAAACATGGTAGTACAG 57.094 36.000 2.06 0.00 0.00 2.74
116 117 9.599866 CTATTCATCTTCAAACATGGTAGTACA 57.400 33.333 2.06 0.00 0.00 2.90
117 118 9.817809 TCTATTCATCTTCAAACATGGTAGTAC 57.182 33.333 0.00 0.00 0.00 2.73
119 120 9.911788 AATCTATTCATCTTCAAACATGGTAGT 57.088 29.630 0.00 0.00 0.00 2.73
121 122 9.904198 TCAATCTATTCATCTTCAAACATGGTA 57.096 29.630 0.00 0.00 0.00 3.25
122 123 8.812513 TCAATCTATTCATCTTCAAACATGGT 57.187 30.769 0.00 0.00 0.00 3.55
166 167 9.981114 CTTCTATGTTTTCCCTATGTTTGTTTT 57.019 29.630 0.00 0.00 0.00 2.43
167 168 8.585018 CCTTCTATGTTTTCCCTATGTTTGTTT 58.415 33.333 0.00 0.00 0.00 2.83
168 169 7.947890 TCCTTCTATGTTTTCCCTATGTTTGTT 59.052 33.333 0.00 0.00 0.00 2.83
169 170 7.466804 TCCTTCTATGTTTTCCCTATGTTTGT 58.533 34.615 0.00 0.00 0.00 2.83
170 171 7.938140 TCCTTCTATGTTTTCCCTATGTTTG 57.062 36.000 0.00 0.00 0.00 2.93
171 172 7.947890 TGTTCCTTCTATGTTTTCCCTATGTTT 59.052 33.333 0.00 0.00 0.00 2.83
172 173 7.466804 TGTTCCTTCTATGTTTTCCCTATGTT 58.533 34.615 0.00 0.00 0.00 2.71
173 174 7.027874 TGTTCCTTCTATGTTTTCCCTATGT 57.972 36.000 0.00 0.00 0.00 2.29
174 175 7.067494 CCTTGTTCCTTCTATGTTTTCCCTATG 59.933 40.741 0.00 0.00 0.00 2.23
175 176 7.119387 CCTTGTTCCTTCTATGTTTTCCCTAT 58.881 38.462 0.00 0.00 0.00 2.57
176 177 6.481643 CCTTGTTCCTTCTATGTTTTCCCTA 58.518 40.000 0.00 0.00 0.00 3.53
177 178 5.325239 CCTTGTTCCTTCTATGTTTTCCCT 58.675 41.667 0.00 0.00 0.00 4.20
178 179 4.462834 CCCTTGTTCCTTCTATGTTTTCCC 59.537 45.833 0.00 0.00 0.00 3.97
179 180 4.462834 CCCCTTGTTCCTTCTATGTTTTCC 59.537 45.833 0.00 0.00 0.00 3.13
180 181 5.321927 TCCCCTTGTTCCTTCTATGTTTTC 58.678 41.667 0.00 0.00 0.00 2.29
181 182 5.325239 CTCCCCTTGTTCCTTCTATGTTTT 58.675 41.667 0.00 0.00 0.00 2.43
182 183 4.263949 CCTCCCCTTGTTCCTTCTATGTTT 60.264 45.833 0.00 0.00 0.00 2.83
183 184 3.267031 CCTCCCCTTGTTCCTTCTATGTT 59.733 47.826 0.00 0.00 0.00 2.71
184 185 2.846827 CCTCCCCTTGTTCCTTCTATGT 59.153 50.000 0.00 0.00 0.00 2.29
185 186 2.846827 ACCTCCCCTTGTTCCTTCTATG 59.153 50.000 0.00 0.00 0.00 2.23
186 187 3.116174 GACCTCCCCTTGTTCCTTCTAT 58.884 50.000 0.00 0.00 0.00 1.98
187 188 2.158066 TGACCTCCCCTTGTTCCTTCTA 60.158 50.000 0.00 0.00 0.00 2.10
188 189 1.363246 GACCTCCCCTTGTTCCTTCT 58.637 55.000 0.00 0.00 0.00 2.85
189 190 1.064825 TGACCTCCCCTTGTTCCTTC 58.935 55.000 0.00 0.00 0.00 3.46
190 191 1.145119 GTTGACCTCCCCTTGTTCCTT 59.855 52.381 0.00 0.00 0.00 3.36
191 192 0.771755 GTTGACCTCCCCTTGTTCCT 59.228 55.000 0.00 0.00 0.00 3.36
192 193 0.605589 CGTTGACCTCCCCTTGTTCC 60.606 60.000 0.00 0.00 0.00 3.62
193 194 0.395312 TCGTTGACCTCCCCTTGTTC 59.605 55.000 0.00 0.00 0.00 3.18
194 195 1.064825 ATCGTTGACCTCCCCTTGTT 58.935 50.000 0.00 0.00 0.00 2.83
195 196 0.324943 CATCGTTGACCTCCCCTTGT 59.675 55.000 0.00 0.00 0.00 3.16
196 197 0.324943 ACATCGTTGACCTCCCCTTG 59.675 55.000 0.00 0.00 0.00 3.61
197 198 0.324943 CACATCGTTGACCTCCCCTT 59.675 55.000 0.00 0.00 0.00 3.95
198 199 1.983224 CACATCGTTGACCTCCCCT 59.017 57.895 0.00 0.00 0.00 4.79
199 200 1.745489 GCACATCGTTGACCTCCCC 60.745 63.158 0.00 0.00 0.00 4.81
200 201 1.745489 GGCACATCGTTGACCTCCC 60.745 63.158 0.00 0.00 0.00 4.30
250 251 1.134438 ACTGTTGACCTTCCTCCCCC 61.134 60.000 0.00 0.00 0.00 5.40
259 260 5.304686 TCAATTTAGACCACTGTTGACCT 57.695 39.130 0.00 0.00 0.00 3.85
279 280 1.000385 CGCAGTTTCCTTGCCAATTCA 60.000 47.619 0.00 0.00 38.31 2.57
311 312 9.462606 GGTTTCCTATCCTATTTCTCAAAAGAA 57.537 33.333 0.00 0.00 39.78 2.52
313 314 8.807948 TGGTTTCCTATCCTATTTCTCAAAAG 57.192 34.615 0.00 0.00 0.00 2.27
314 315 8.390921 ACTGGTTTCCTATCCTATTTCTCAAAA 58.609 33.333 0.00 0.00 0.00 2.44
315 316 7.829211 CACTGGTTTCCTATCCTATTTCTCAAA 59.171 37.037 0.00 0.00 0.00 2.69
316 317 7.338710 CACTGGTTTCCTATCCTATTTCTCAA 58.661 38.462 0.00 0.00 0.00 3.02
317 318 6.126768 CCACTGGTTTCCTATCCTATTTCTCA 60.127 42.308 0.00 0.00 0.00 3.27
318 319 6.126739 ACCACTGGTTTCCTATCCTATTTCTC 60.127 42.308 0.00 0.00 27.29 2.87
319 320 5.731678 ACCACTGGTTTCCTATCCTATTTCT 59.268 40.000 0.00 0.00 27.29 2.52
320 321 6.002653 ACCACTGGTTTCCTATCCTATTTC 57.997 41.667 0.00 0.00 27.29 2.17
321 322 6.402981 AACCACTGGTTTCCTATCCTATTT 57.597 37.500 7.72 0.00 44.33 1.40
322 323 7.404980 TCTTAACCACTGGTTTCCTATCCTATT 59.595 37.037 18.75 0.00 44.33 1.73
323 324 6.906901 TCTTAACCACTGGTTTCCTATCCTAT 59.093 38.462 18.75 0.00 44.33 2.57
324 325 6.266080 TCTTAACCACTGGTTTCCTATCCTA 58.734 40.000 18.75 0.00 44.33 2.94
325 326 5.098663 TCTTAACCACTGGTTTCCTATCCT 58.901 41.667 18.75 0.00 44.33 3.24
326 327 5.429130 CTCTTAACCACTGGTTTCCTATCC 58.571 45.833 18.75 0.00 44.33 2.59
327 328 5.045797 ACCTCTTAACCACTGGTTTCCTATC 60.046 44.000 18.75 0.00 44.33 2.08
336 337 1.298859 GCGCACCTCTTAACCACTGG 61.299 60.000 0.30 0.00 0.00 4.00
352 353 3.286576 CAATGAATCTTCATCTTCGCGC 58.713 45.455 0.00 0.00 46.60 6.86
396 397 4.748144 CACCCTGGCAGCCTTCCC 62.748 72.222 14.15 0.00 0.00 3.97
408 409 1.598130 GCTCTGCACGAAACACCCT 60.598 57.895 0.00 0.00 0.00 4.34
423 424 1.937546 CTTGGACCGGGCATTTGCTC 61.938 60.000 11.00 0.00 41.70 4.26
442 443 0.465460 TAAGGGATGCGGCCATGAAC 60.465 55.000 2.24 0.00 0.00 3.18
443 444 0.257328 TTAAGGGATGCGGCCATGAA 59.743 50.000 2.24 0.00 0.00 2.57
444 445 0.257328 TTTAAGGGATGCGGCCATGA 59.743 50.000 2.24 0.00 0.00 3.07
445 446 0.385390 GTTTAAGGGATGCGGCCATG 59.615 55.000 2.24 0.00 0.00 3.66
446 447 1.101049 CGTTTAAGGGATGCGGCCAT 61.101 55.000 2.24 0.00 0.00 4.40
456 467 0.604511 ACCCGCTCAACGTTTAAGGG 60.605 55.000 20.13 20.13 41.42 3.95
458 469 4.427312 ACTATACCCGCTCAACGTTTAAG 58.573 43.478 0.00 0.00 41.42 1.85
470 481 0.108472 GGGCCGATTACTATACCCGC 60.108 60.000 0.00 0.00 0.00 6.13
491 502 0.669625 GGTGGTGTCTGTCGGCTAAC 60.670 60.000 0.00 0.00 0.00 2.34
576 600 1.268283 GGAGTGGGGGAGGAAGAGTG 61.268 65.000 0.00 0.00 0.00 3.51
601 630 4.452733 GAAGGCGTCGAGGTGGGG 62.453 72.222 7.01 0.00 0.00 4.96
706 758 4.379243 AAGGAGAGGCGTGGCACG 62.379 66.667 33.96 33.96 45.88 5.34
707 759 2.743928 CAAGGAGAGGCGTGGCAC 60.744 66.667 7.79 7.79 0.00 5.01
708 760 3.240134 GACAAGGAGAGGCGTGGCA 62.240 63.158 0.00 0.00 0.00 4.92
709 761 2.435059 GACAAGGAGAGGCGTGGC 60.435 66.667 0.00 0.00 0.00 5.01
710 762 2.266055 GGACAAGGAGAGGCGTGG 59.734 66.667 0.00 0.00 0.00 4.94
714 766 4.821589 CGCGGGACAAGGAGAGGC 62.822 72.222 0.00 0.00 0.00 4.70
758 810 1.062002 CGCTTATTTGTACTGGCGTGG 59.938 52.381 0.00 0.00 38.20 4.94
844 916 2.032860 CTGGGCACGTAGAGATGGGG 62.033 65.000 0.00 0.00 0.00 4.96
866 938 5.368989 GTCATGGGATCTTTAACTAGGTGG 58.631 45.833 0.00 0.00 0.00 4.61
867 939 5.050490 CGTCATGGGATCTTTAACTAGGTG 58.950 45.833 0.00 0.00 0.00 4.00
868 940 4.443034 GCGTCATGGGATCTTTAACTAGGT 60.443 45.833 0.00 0.00 0.00 3.08
869 941 4.058817 GCGTCATGGGATCTTTAACTAGG 58.941 47.826 0.00 0.00 0.00 3.02
870 942 3.736252 CGCGTCATGGGATCTTTAACTAG 59.264 47.826 0.00 0.00 0.00 2.57
871 943 3.131577 ACGCGTCATGGGATCTTTAACTA 59.868 43.478 5.58 0.00 0.00 2.24
872 944 2.093658 ACGCGTCATGGGATCTTTAACT 60.094 45.455 5.58 0.00 0.00 2.24
873 945 2.277084 ACGCGTCATGGGATCTTTAAC 58.723 47.619 5.58 0.00 0.00 2.01
874 946 2.684001 ACGCGTCATGGGATCTTTAA 57.316 45.000 5.58 0.00 0.00 1.52
875 947 2.223876 GGTACGCGTCATGGGATCTTTA 60.224 50.000 18.63 0.00 0.00 1.85
876 948 1.472728 GGTACGCGTCATGGGATCTTT 60.473 52.381 18.63 0.00 0.00 2.52
877 949 0.104304 GGTACGCGTCATGGGATCTT 59.896 55.000 18.63 0.00 0.00 2.40
878 950 1.740285 GGTACGCGTCATGGGATCT 59.260 57.895 18.63 0.00 0.00 2.75
879 951 4.338327 GGTACGCGTCATGGGATC 57.662 61.111 18.63 0.00 0.00 3.36
894 972 4.783501 TAACTAGGCGGGGGCGGT 62.784 66.667 0.00 0.00 0.00 5.68
897 975 0.253894 TCTTTTAACTAGGCGGGGGC 59.746 55.000 0.00 0.00 0.00 5.80
898 976 2.486727 GGATCTTTTAACTAGGCGGGGG 60.487 54.545 0.00 0.00 0.00 5.40
914 994 0.107456 CTGCGGCTTGTATGGGATCT 59.893 55.000 0.00 0.00 0.00 2.75
915 995 1.510480 GCTGCGGCTTGTATGGGATC 61.510 60.000 11.21 0.00 35.22 3.36
916 996 1.526917 GCTGCGGCTTGTATGGGAT 60.527 57.895 11.21 0.00 35.22 3.85
917 997 2.124736 GCTGCGGCTTGTATGGGA 60.125 61.111 11.21 0.00 35.22 4.37
918 998 2.438254 TGCTGCGGCTTGTATGGG 60.438 61.111 20.27 0.00 39.59 4.00
919 999 3.104766 CTGCTGCGGCTTGTATGG 58.895 61.111 20.27 0.00 39.59 2.74
920 1000 2.319011 CTGCTGCTGCGGCTTGTATG 62.319 60.000 31.19 12.37 43.34 2.39
921 1001 2.046023 TGCTGCTGCGGCTTGTAT 60.046 55.556 31.19 0.00 43.34 2.29
922 1002 2.743538 CTGCTGCTGCGGCTTGTA 60.744 61.111 31.19 12.57 43.34 2.41
955 1038 7.306632 CGACTTGTTTTGGAAGTTCACTACTAG 60.307 40.741 5.01 6.03 35.54 2.57
956 1039 6.477688 CGACTTGTTTTGGAAGTTCACTACTA 59.522 38.462 5.01 0.00 35.54 1.82
957 1040 5.293569 CGACTTGTTTTGGAAGTTCACTACT 59.706 40.000 5.01 0.00 39.32 2.57
958 1041 5.499047 CGACTTGTTTTGGAAGTTCACTAC 58.501 41.667 5.01 0.00 33.71 2.73
981 1064 3.712881 GTGTGCTCGGACGTTGCC 61.713 66.667 0.00 0.00 0.00 4.52
982 1065 1.841663 ATTGTGTGCTCGGACGTTGC 61.842 55.000 0.00 0.00 0.00 4.17
1458 1571 0.388649 CGAAGTCGGTGACCTTGAGG 60.389 60.000 0.00 0.00 37.14 3.86
1809 1922 0.321653 CGAACCCCCTCTTGAACCAG 60.322 60.000 0.00 0.00 0.00 4.00
2067 2180 4.021925 GCCTTGCCCACGGACTCT 62.022 66.667 0.00 0.00 0.00 3.24
2339 2452 5.798125 TCACTAATTTGCATTGGGTCAAA 57.202 34.783 0.00 0.00 36.72 2.69
2340 2453 5.999205 ATCACTAATTTGCATTGGGTCAA 57.001 34.783 0.00 0.00 0.00 3.18
2344 2457 6.127647 ACACAGTATCACTAATTTGCATTGGG 60.128 38.462 0.00 0.00 0.00 4.12
2347 2460 8.046708 TCCTACACAGTATCACTAATTTGCATT 58.953 33.333 0.00 0.00 0.00 3.56
2349 2462 6.816640 GTCCTACACAGTATCACTAATTTGCA 59.183 38.462 0.00 0.00 0.00 4.08
2473 2629 0.037882 TCTCCTCAAGTTGCTCTGCG 60.038 55.000 0.00 0.00 0.00 5.18
2488 2646 2.356382 CGTGATCTACAGACACCTCTCC 59.644 54.545 0.00 0.00 0.00 3.71
2498 2656 4.147219 TCGCATGTATCGTGATCTACAG 57.853 45.455 0.00 0.00 31.79 2.74
2506 2664 2.866156 ACAAATCCTCGCATGTATCGTG 59.134 45.455 0.00 0.00 0.00 4.35
2514 2672 0.035152 TCAGGCACAAATCCTCGCAT 60.035 50.000 0.00 0.00 0.00 4.73
2537 2695 1.368137 GATCGCCGGACGTACGTAC 60.368 63.158 22.87 21.87 44.19 3.67
2538 2696 2.870341 CGATCGCCGGACGTACGTA 61.870 63.158 22.87 4.59 44.19 3.57
2539 2697 4.228097 CGATCGCCGGACGTACGT 62.228 66.667 23.04 23.04 44.19 3.57
2540 2698 3.232645 ATCGATCGCCGGACGTACG 62.233 63.158 14.78 14.78 44.19 3.67
2541 2699 1.724929 CATCGATCGCCGGACGTAC 60.725 63.158 11.09 6.53 44.19 3.67
2575 2733 8.099364 TGAATTGATCAGGAACAAAACTACTC 57.901 34.615 0.00 0.00 33.04 2.59
2619 2777 5.514559 CCATGTGATCATCGAATCGTATCTC 59.485 44.000 1.52 6.54 31.15 2.75
2620 2778 5.047731 ACCATGTGATCATCGAATCGTATCT 60.048 40.000 1.52 0.00 31.15 1.98
2721 2916 6.600032 AGGTAAGCTCGATAATCATAGACGAT 59.400 38.462 0.00 0.00 32.81 3.73
2722 2917 5.938710 AGGTAAGCTCGATAATCATAGACGA 59.061 40.000 0.00 0.00 0.00 4.20
2747 2942 5.304101 TCCTTTTGACACATACAAATGGCTT 59.696 36.000 15.54 0.00 44.63 4.35
2780 5043 7.602644 TCTTCTGGTAAGTTATGTTACTTGCTG 59.397 37.037 0.00 0.00 39.67 4.41
2791 5054 7.232534 TGGCAAATTTGTCTTCTGGTAAGTTAT 59.767 33.333 22.47 0.00 33.01 1.89
2794 5057 4.892934 TGGCAAATTTGTCTTCTGGTAAGT 59.107 37.500 22.47 0.00 33.01 2.24
2795 5058 5.452078 TGGCAAATTTGTCTTCTGGTAAG 57.548 39.130 22.47 0.00 33.01 2.34
2800 5063 7.760794 TGCTATAAATGGCAAATTTGTCTTCTG 59.239 33.333 22.47 8.33 41.45 3.02
2801 5064 7.839907 TGCTATAAATGGCAAATTTGTCTTCT 58.160 30.769 22.47 7.01 41.45 2.85
2822 5085 9.373603 ACGTAATGACAATTATGTTACTTGCTA 57.626 29.630 0.00 0.00 43.10 3.49
2823 5086 8.263940 ACGTAATGACAATTATGTTACTTGCT 57.736 30.769 0.00 0.00 43.10 3.91
2824 5087 9.632969 CTACGTAATGACAATTATGTTACTTGC 57.367 33.333 8.24 0.00 43.10 4.01
2825 5088 9.632969 GCTACGTAATGACAATTATGTTACTTG 57.367 33.333 8.24 0.00 43.10 3.16
2826 5089 8.537223 CGCTACGTAATGACAATTATGTTACTT 58.463 33.333 8.24 0.00 43.10 2.24
2827 5090 7.306399 GCGCTACGTAATGACAATTATGTTACT 60.306 37.037 0.00 0.00 43.10 2.24
2828 5091 6.784227 GCGCTACGTAATGACAATTATGTTAC 59.216 38.462 0.00 2.38 43.10 2.50
2829 5092 6.698329 AGCGCTACGTAATGACAATTATGTTA 59.302 34.615 8.99 0.00 43.10 2.41
2830 5093 5.522460 AGCGCTACGTAATGACAATTATGTT 59.478 36.000 8.99 0.00 43.10 2.71
2831 5094 5.047847 AGCGCTACGTAATGACAATTATGT 58.952 37.500 8.99 8.07 45.95 2.29
2834 5097 6.919115 TGATAAGCGCTACGTAATGACAATTA 59.081 34.615 12.05 0.00 0.00 1.40
2838 5101 4.295857 TGATAAGCGCTACGTAATGACA 57.704 40.909 12.05 0.00 0.00 3.58
2840 5103 5.177725 TCTTGATAAGCGCTACGTAATGA 57.822 39.130 12.05 1.18 0.00 2.57
2841 5104 5.883328 TTCTTGATAAGCGCTACGTAATG 57.117 39.130 12.05 0.00 0.00 1.90
2844 5107 3.787634 CGTTTCTTGATAAGCGCTACGTA 59.212 43.478 12.05 0.00 0.00 3.57
2847 5110 4.090930 TCAACGTTTCTTGATAAGCGCTAC 59.909 41.667 12.05 6.26 36.66 3.58
2849 5112 3.064207 TCAACGTTTCTTGATAAGCGCT 58.936 40.909 2.64 2.64 36.66 5.92
2851 5114 4.386049 AGACTCAACGTTTCTTGATAAGCG 59.614 41.667 0.00 0.00 38.77 4.68
2852 5115 5.847670 AGACTCAACGTTTCTTGATAAGC 57.152 39.130 0.00 0.00 29.71 3.09
2853 5116 7.869016 TGTAGACTCAACGTTTCTTGATAAG 57.131 36.000 6.31 0.00 29.71 1.73
2858 5121 4.508124 AGCTTGTAGACTCAACGTTTCTTG 59.492 41.667 6.31 0.00 0.00 3.02
2859 5122 4.694339 AGCTTGTAGACTCAACGTTTCTT 58.306 39.130 6.31 0.00 0.00 2.52
2861 5124 6.707599 ATTAGCTTGTAGACTCAACGTTTC 57.292 37.500 0.00 0.00 0.00 2.78
2866 5159 7.974675 TGCATTTATTAGCTTGTAGACTCAAC 58.025 34.615 0.00 0.00 0.00 3.18
2878 5171 8.525290 AAAGTAGATGGTTGCATTTATTAGCT 57.475 30.769 0.00 0.00 0.00 3.32
2965 5258 7.024171 GTGAAAGCAATTCTAAGCTCCTTAAC 58.976 38.462 0.00 0.00 40.90 2.01
2970 5263 5.376854 TTGTGAAAGCAATTCTAAGCTCC 57.623 39.130 0.00 0.00 40.90 4.70
2974 5267 8.872845 ACTTTTGTTTGTGAAAGCAATTCTAAG 58.127 29.630 4.23 0.00 38.92 2.18
2977 5270 8.250332 TCTACTTTTGTTTGTGAAAGCAATTCT 58.750 29.630 4.23 0.00 38.92 2.40
2980 5273 8.250332 TCTTCTACTTTTGTTTGTGAAAGCAAT 58.750 29.630 0.00 0.00 36.56 3.56
3001 5294 3.744660 AGAGGCGTTGTGATTTTCTTCT 58.255 40.909 0.00 0.00 0.00 2.85
3002 5295 4.691216 AGTAGAGGCGTTGTGATTTTCTTC 59.309 41.667 0.00 0.00 0.00 2.87
3005 5298 5.051641 CGATAGTAGAGGCGTTGTGATTTTC 60.052 44.000 0.00 0.00 0.00 2.29
3006 5299 4.804139 CGATAGTAGAGGCGTTGTGATTTT 59.196 41.667 0.00 0.00 0.00 1.82
3039 5332 3.443681 CCGATGCAAAGTACTTGGGAAAT 59.556 43.478 9.34 0.00 35.38 2.17
3050 5343 2.031919 TCACCGCCGATGCAAAGT 59.968 55.556 0.00 0.00 37.32 2.66
3057 5350 2.046314 CTTTGGGTCACCGCCGAT 60.046 61.111 0.00 0.00 40.75 4.18
3061 5354 2.746277 ATCGCTTTGGGTCACCGC 60.746 61.111 0.00 0.00 40.75 5.68
3091 5384 7.539366 GCTACCGTCTATCATTCTCTTCAATAC 59.461 40.741 0.00 0.00 0.00 1.89
3093 5386 6.040955 TGCTACCGTCTATCATTCTCTTCAAT 59.959 38.462 0.00 0.00 0.00 2.57
3097 5390 5.279206 CCATGCTACCGTCTATCATTCTCTT 60.279 44.000 0.00 0.00 0.00 2.85
3100 5393 4.021894 GTCCATGCTACCGTCTATCATTCT 60.022 45.833 0.00 0.00 0.00 2.40
3112 5405 1.812571 CCAACACAAGTCCATGCTACC 59.187 52.381 0.00 0.00 0.00 3.18
3118 5411 2.747446 GCGTATTCCAACACAAGTCCAT 59.253 45.455 0.00 0.00 0.00 3.41
3134 5427 0.464036 TGAGCGAAATGGGAGCGTAT 59.536 50.000 0.00 0.00 35.78 3.06
3135 5428 0.248012 TTGAGCGAAATGGGAGCGTA 59.752 50.000 0.00 0.00 35.78 4.42
3138 5431 1.425428 CGTTGAGCGAAATGGGAGC 59.575 57.895 0.00 0.00 44.77 4.70
3149 5442 4.213482 ACCTGTTAGACAATTTCGTTGAGC 59.787 41.667 0.00 0.00 40.37 4.26
3154 5447 5.613329 TGGTTACCTGTTAGACAATTTCGT 58.387 37.500 2.07 0.00 0.00 3.85
3155 5448 6.737254 ATGGTTACCTGTTAGACAATTTCG 57.263 37.500 2.07 0.00 0.00 3.46
3160 5454 9.016438 GGATTTTAATGGTTACCTGTTAGACAA 57.984 33.333 2.07 0.00 0.00 3.18
3165 5459 8.838741 ACCTAGGATTTTAATGGTTACCTGTTA 58.161 33.333 17.98 0.00 0.00 2.41
3170 5464 9.910267 TTTAGACCTAGGATTTTAATGGTTACC 57.090 33.333 17.98 0.00 0.00 2.85
3175 5469 9.780186 CTACCTTTAGACCTAGGATTTTAATGG 57.220 37.037 17.98 18.26 35.45 3.16
3184 5478 5.541258 TGGTTCTACCTTTAGACCTAGGA 57.459 43.478 17.98 0.00 39.58 2.94
3190 5488 7.865889 CCACAAAAATTGGTTCTACCTTTAGAC 59.134 37.037 0.00 0.00 39.58 2.59
3192 5490 7.865889 GTCCACAAAAATTGGTTCTACCTTTAG 59.134 37.037 0.00 0.00 39.58 1.85
3197 5495 4.587262 AGGTCCACAAAAATTGGTTCTACC 59.413 41.667 0.00 0.00 39.22 3.18
3207 5505 4.651778 TCAAGATCGAGGTCCACAAAAAT 58.348 39.130 0.00 0.00 0.00 1.82
3241 5540 2.287009 CGGCAAAGAAATCTATTCCGGC 60.287 50.000 0.00 0.00 31.76 6.13
3243 5542 2.287009 GGCGGCAAAGAAATCTATTCCG 60.287 50.000 3.07 10.75 35.53 4.30
3286 5585 4.102210 TGGGCATCTTCACCAAATCAAAAA 59.898 37.500 0.00 0.00 0.00 1.94
3318 5617 4.274950 TGGGCACTTCTTTTCTTTTAGTCG 59.725 41.667 0.00 0.00 0.00 4.18


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.