Multiple sequence alignment - TraesCS5A01G224000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G224000 chr5A 100.000 3598 0 0 1 3598 439554424 439550827 0.000000e+00 6645.0
1 TraesCS5A01G224000 chr5A 80.857 747 82 29 978 1708 193889584 193890285 6.840000e-147 531.0
2 TraesCS5A01G224000 chr5A 80.438 639 68 31 978 1602 219061855 219061260 5.520000e-118 435.0
3 TraesCS5A01G224000 chr5A 88.827 179 18 2 365 542 320214228 320214405 6.050000e-53 219.0
4 TraesCS5A01G224000 chr5A 92.248 129 10 0 224 352 439554077 439553949 2.210000e-42 183.0
5 TraesCS5A01G224000 chr5A 85.981 107 13 2 258 362 150766584 150766478 2.940000e-21 113.0
6 TraesCS5A01G224000 chr5B 90.773 932 47 21 1985 2885 397835263 397834340 0.000000e+00 1208.0
7 TraesCS5A01G224000 chr5B 92.598 662 44 3 2938 3598 397834050 397833393 0.000000e+00 946.0
8 TraesCS5A01G224000 chr5B 83.903 907 72 43 837 1713 397836297 397835435 0.000000e+00 798.0
9 TraesCS5A01G224000 chr5B 87.549 257 26 4 1 252 397836668 397836413 3.510000e-75 292.0
10 TraesCS5A01G224000 chr5B 94.845 97 5 0 998 1094 445173802 445173898 6.220000e-33 152.0
11 TraesCS5A01G224000 chr5B 85.345 116 6 4 910 1025 4882747 4882851 3.800000e-20 110.0
12 TraesCS5A01G224000 chr5B 88.043 92 8 2 255 344 114929925 114930015 4.910000e-19 106.0
13 TraesCS5A01G224000 chr5B 100.000 29 0 0 190 218 322356477 322356449 2.000000e-03 54.7
14 TraesCS5A01G224000 chr5D 88.934 985 43 30 1985 2943 338657399 338656455 0.000000e+00 1155.0
15 TraesCS5A01G224000 chr5D 92.691 643 28 6 2960 3598 338656320 338655693 0.000000e+00 909.0
16 TraesCS5A01G224000 chr5D 87.070 611 35 17 707 1286 338658468 338657871 0.000000e+00 651.0
17 TraesCS5A01G224000 chr5D 88.338 343 21 10 1451 1781 338657867 338657532 9.360000e-106 394.0
18 TraesCS5A01G224000 chr5D 90.909 165 14 1 382 545 412100097 412100261 1.680000e-53 220.0
19 TraesCS5A01G224000 chr5D 93.814 97 6 0 998 1094 373763090 373763186 2.890000e-31 147.0
20 TraesCS5A01G224000 chr5D 86.441 118 7 3 912 1029 440523149 440523041 1.750000e-23 121.0
21 TraesCS5A01G224000 chr5D 86.598 97 11 2 258 352 54934442 54934538 4.910000e-19 106.0
22 TraesCS5A01G224000 chr1A 84.166 821 87 21 903 1708 278491213 278490421 0.000000e+00 756.0
23 TraesCS5A01G224000 chr3A 82.787 854 91 26 878 1708 511043184 511044004 0.000000e+00 712.0
24 TraesCS5A01G224000 chr6A 80.697 746 82 32 978 1708 390565786 390566484 1.140000e-144 523.0
25 TraesCS5A01G224000 chr6A 94.792 96 5 0 999 1094 129316997 129317092 2.240000e-32 150.0
26 TraesCS5A01G224000 chr6A 82.609 115 14 6 256 365 524305939 524306052 2.960000e-16 97.1
27 TraesCS5A01G224000 chr2D 92.683 164 11 1 382 544 291991893 291992056 6.010000e-58 235.0
28 TraesCS5A01G224000 chr2D 86.957 115 6 3 912 1026 537410417 537410522 1.750000e-23 121.0
29 TraesCS5A01G224000 chr2D 100.000 33 0 0 190 222 460486 460518 1.080000e-05 62.1
30 TraesCS5A01G224000 chr6D 92.169 166 11 2 378 542 431160664 431160828 2.160000e-57 233.0
31 TraesCS5A01G224000 chr6D 89.474 171 17 1 372 542 21051962 21052131 7.820000e-52 215.0
32 TraesCS5A01G224000 chr6D 94.792 96 5 0 999 1094 106048845 106048940 2.240000e-32 150.0
33 TraesCS5A01G224000 chr6D 86.087 115 7 3 912 1026 460926662 460926767 8.160000e-22 115.0
34 TraesCS5A01G224000 chr2A 92.638 163 11 1 382 543 342647399 342647561 2.160000e-57 233.0
35 TraesCS5A01G224000 chr2A 91.566 166 13 1 378 542 161773055 161772890 1.000000e-55 228.0
36 TraesCS5A01G224000 chr2A 90.909 165 13 2 381 543 608605553 608605389 1.680000e-53 220.0
37 TraesCS5A01G224000 chr2A 88.816 152 16 1 1558 1708 317994191 317994342 6.130000e-43 185.0
38 TraesCS5A01G224000 chr7B 88.764 178 16 4 369 543 339685428 339685604 7.820000e-52 215.0
39 TraesCS5A01G224000 chr3B 90.323 155 14 1 1555 1708 727506713 727506867 6.090000e-48 202.0
40 TraesCS5A01G224000 chr3B 92.135 89 7 0 256 344 655667843 655667755 3.770000e-25 126.0
41 TraesCS5A01G224000 chr7A 86.842 152 19 1 1558 1708 160398384 160398233 6.180000e-38 169.0
42 TraesCS5A01G224000 chr7A 90.323 93 9 0 256 348 232336871 232336963 4.880000e-24 122.0
43 TraesCS5A01G224000 chr7A 100.000 31 0 0 189 219 103158433 103158463 1.400000e-04 58.4
44 TraesCS5A01G224000 chr4D 93.814 97 6 0 998 1094 394384207 394384303 2.890000e-31 147.0
45 TraesCS5A01G224000 chr7D 86.087 115 7 3 912 1026 431160431 431160536 8.160000e-22 115.0
46 TraesCS5A01G224000 chr6B 86.598 97 13 0 256 352 73077916 73077820 1.370000e-19 108.0
47 TraesCS5A01G224000 chr2B 87.097 93 12 0 256 348 357144539 357144447 4.910000e-19 106.0
48 TraesCS5A01G224000 chr1D 80.952 105 20 0 2488 2592 291842116 291842220 2.300000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G224000 chr5A 439550827 439554424 3597 True 3414.00 6645 96.12400 1 3598 2 chr5A.!!$R3 3597
1 TraesCS5A01G224000 chr5A 193889584 193890285 701 False 531.00 531 80.85700 978 1708 1 chr5A.!!$F1 730
2 TraesCS5A01G224000 chr5A 219061260 219061855 595 True 435.00 435 80.43800 978 1602 1 chr5A.!!$R2 624
3 TraesCS5A01G224000 chr5B 397833393 397836668 3275 True 811.00 1208 88.70575 1 3598 4 chr5B.!!$R2 3597
4 TraesCS5A01G224000 chr5D 338655693 338658468 2775 True 777.25 1155 89.25825 707 3598 4 chr5D.!!$R2 2891
5 TraesCS5A01G224000 chr1A 278490421 278491213 792 True 756.00 756 84.16600 903 1708 1 chr1A.!!$R1 805
6 TraesCS5A01G224000 chr3A 511043184 511044004 820 False 712.00 712 82.78700 878 1708 1 chr3A.!!$F1 830
7 TraesCS5A01G224000 chr6A 390565786 390566484 698 False 523.00 523 80.69700 978 1708 1 chr6A.!!$F2 730

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
331 337 0.865769 ACGAAGCAAAACGAGCGAAT 59.134 45.0 0.0 0.0 37.01 3.34 F
1151 1184 0.179081 GTCTACCCGCTGATTGGTCC 60.179 60.0 0.0 0.0 36.04 4.46 F
1950 2038 0.029300 TTCTGCACTGCGAACTTTGC 59.971 50.0 0.0 0.0 35.45 3.68 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1933 2021 0.029834 AAGCAAAGTTCGCAGTGCAG 59.970 50.0 16.83 8.26 39.50 4.41 R
1983 2071 0.242825 CTGCCACTTGACCAATGCAG 59.757 55.0 11.73 11.73 40.05 4.41 R
2752 2879 0.651031 GAGGCGGATAAAGTTGCGAC 59.349 55.0 0.00 0.00 38.98 5.19 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 38 2.254546 AAAATGATCTGCGCGGGATA 57.745 45.000 17.88 2.85 0.00 2.59
37 39 2.479566 AAATGATCTGCGCGGGATAT 57.520 45.000 17.88 1.81 0.00 1.63
65 67 4.672587 TCCTCTAAGATAGCGTGCAAAT 57.327 40.909 0.00 0.00 0.00 2.32
68 70 6.216569 TCCTCTAAGATAGCGTGCAAATTAG 58.783 40.000 0.00 0.00 0.00 1.73
71 73 5.983720 TCTAAGATAGCGTGCAAATTAGTCC 59.016 40.000 0.00 0.00 0.00 3.85
79 81 4.324402 GCGTGCAAATTAGTCCTTTGAATG 59.676 41.667 0.00 0.00 35.99 2.67
85 87 8.825745 TGCAAATTAGTCCTTTGAATGTTTTTC 58.174 29.630 0.24 0.00 35.99 2.29
87 89 9.323985 CAAATTAGTCCTTTGAATGTTTTTCCA 57.676 29.630 0.00 0.00 35.99 3.53
89 91 9.546428 AATTAGTCCTTTGAATGTTTTTCCAAG 57.454 29.630 0.00 0.00 0.00 3.61
91 93 5.660864 AGTCCTTTGAATGTTTTTCCAAGGA 59.339 36.000 13.82 13.82 43.69 3.36
92 94 6.327365 AGTCCTTTGAATGTTTTTCCAAGGAT 59.673 34.615 18.37 9.20 45.84 3.24
94 96 7.171508 GTCCTTTGAATGTTTTTCCAAGGATTC 59.828 37.037 18.37 7.95 45.84 2.52
174 180 5.431731 TCCTATAAAAATTCTGCTCCCTCCA 59.568 40.000 0.00 0.00 0.00 3.86
177 183 7.944554 CCTATAAAAATTCTGCTCCCTCCATTA 59.055 37.037 0.00 0.00 0.00 1.90
179 185 2.918712 ATTCTGCTCCCTCCATTACG 57.081 50.000 0.00 0.00 0.00 3.18
183 189 2.429610 TCTGCTCCCTCCATTACGTAAC 59.570 50.000 10.81 0.00 0.00 2.50
187 193 3.005155 GCTCCCTCCATTACGTAACGTAT 59.995 47.826 10.81 0.00 41.97 3.06
202 208 7.306953 ACGTAACGTATGGCATATTTTGTTTT 58.693 30.769 10.92 0.09 38.73 2.43
226 232 8.687824 TTCTGAAAGTCAAACATGTCTTTTTC 57.312 30.769 10.56 10.97 33.76 2.29
246 252 9.552114 CTTTTTCTTGCAGATAGTCTACATTTG 57.448 33.333 0.00 0.00 0.00 2.32
248 254 7.834068 TTCTTGCAGATAGTCTACATTTGAC 57.166 36.000 0.00 0.00 34.88 3.18
252 258 7.601073 TGCAGATAGTCTACATTTGACAAAG 57.399 36.000 6.77 1.89 36.94 2.77
253 259 7.161404 TGCAGATAGTCTACATTTGACAAAGT 58.839 34.615 6.77 7.36 36.94 2.66
254 260 7.661437 TGCAGATAGTCTACATTTGACAAAGTT 59.339 33.333 6.77 0.00 36.94 2.66
266 272 7.393515 ACATTTGACAAAGTTTATACTCCCTCC 59.606 37.037 6.77 0.00 31.99 4.30
267 273 6.442541 TTGACAAAGTTTATACTCCCTCCA 57.557 37.500 0.00 0.00 31.99 3.86
269 275 7.027874 TGACAAAGTTTATACTCCCTCCATT 57.972 36.000 0.00 0.00 31.99 3.16
270 276 6.884295 TGACAAAGTTTATACTCCCTCCATTG 59.116 38.462 0.00 0.00 31.99 2.82
272 278 5.717119 AAGTTTATACTCCCTCCATTGCT 57.283 39.130 0.00 0.00 31.99 3.91
273 279 6.824958 AAGTTTATACTCCCTCCATTGCTA 57.175 37.500 0.00 0.00 31.99 3.49
277 283 8.945193 AGTTTATACTCCCTCCATTGCTAAATA 58.055 33.333 0.00 0.00 0.00 1.40
284 290 8.673251 ACTCCCTCCATTGCTAAATATAAATCT 58.327 33.333 0.00 0.00 0.00 2.40
324 330 6.807708 ATAGACTACATACGAAGCAAAACG 57.192 37.500 0.00 0.00 0.00 3.60
325 331 4.801891 AGACTACATACGAAGCAAAACGA 58.198 39.130 0.00 0.00 0.00 3.85
326 332 4.857588 AGACTACATACGAAGCAAAACGAG 59.142 41.667 0.00 0.00 0.00 4.18
327 333 2.875080 ACATACGAAGCAAAACGAGC 57.125 45.000 0.00 0.00 0.00 5.03
328 334 1.126113 ACATACGAAGCAAAACGAGCG 59.874 47.619 0.00 0.00 37.01 5.03
329 335 1.388768 CATACGAAGCAAAACGAGCGA 59.611 47.619 0.00 0.00 37.01 4.93
330 336 1.489574 TACGAAGCAAAACGAGCGAA 58.510 45.000 0.00 0.00 37.01 4.70
331 337 0.865769 ACGAAGCAAAACGAGCGAAT 59.134 45.000 0.00 0.00 37.01 3.34
332 338 1.136336 ACGAAGCAAAACGAGCGAATC 60.136 47.619 0.00 0.00 37.01 2.52
333 339 1.126846 CGAAGCAAAACGAGCGAATCT 59.873 47.619 0.00 0.00 37.01 2.40
334 340 2.344441 CGAAGCAAAACGAGCGAATCTA 59.656 45.455 0.00 0.00 37.01 1.98
335 341 3.660777 GAAGCAAAACGAGCGAATCTAC 58.339 45.455 0.00 0.00 37.01 2.59
336 342 2.683968 AGCAAAACGAGCGAATCTACA 58.316 42.857 0.00 0.00 37.01 2.74
337 343 2.412089 AGCAAAACGAGCGAATCTACAC 59.588 45.455 0.00 0.00 37.01 2.90
338 344 2.412089 GCAAAACGAGCGAATCTACACT 59.588 45.455 0.00 0.00 0.00 3.55
339 345 3.482112 GCAAAACGAGCGAATCTACACTC 60.482 47.826 0.00 0.00 0.00 3.51
340 346 3.851976 AAACGAGCGAATCTACACTCT 57.148 42.857 0.00 0.00 0.00 3.24
341 347 4.959596 AAACGAGCGAATCTACACTCTA 57.040 40.909 0.00 0.00 0.00 2.43
342 348 4.959596 AACGAGCGAATCTACACTCTAA 57.040 40.909 0.00 0.00 0.00 2.10
343 349 4.959596 ACGAGCGAATCTACACTCTAAA 57.040 40.909 0.00 0.00 0.00 1.85
344 350 5.306532 ACGAGCGAATCTACACTCTAAAA 57.693 39.130 0.00 0.00 0.00 1.52
345 351 5.892568 ACGAGCGAATCTACACTCTAAAAT 58.107 37.500 0.00 0.00 0.00 1.82
346 352 7.024340 ACGAGCGAATCTACACTCTAAAATA 57.976 36.000 0.00 0.00 0.00 1.40
347 353 7.649973 ACGAGCGAATCTACACTCTAAAATAT 58.350 34.615 0.00 0.00 0.00 1.28
348 354 8.136165 ACGAGCGAATCTACACTCTAAAATATT 58.864 33.333 0.00 0.00 0.00 1.28
349 355 8.969267 CGAGCGAATCTACACTCTAAAATATTT 58.031 33.333 0.00 0.00 0.00 1.40
387 393 9.444600 TCTACATTTGACAAAGTTTATACTCCC 57.555 33.333 6.77 0.00 31.99 4.30
388 394 9.449719 CTACATTTGACAAAGTTTATACTCCCT 57.550 33.333 6.77 0.00 31.99 4.20
389 395 8.336801 ACATTTGACAAAGTTTATACTCCCTC 57.663 34.615 6.77 0.00 31.99 4.30
390 396 7.393515 ACATTTGACAAAGTTTATACTCCCTCC 59.606 37.037 6.77 0.00 31.99 4.30
391 397 6.442541 TTGACAAAGTTTATACTCCCTCCA 57.557 37.500 0.00 0.00 31.99 3.86
392 398 6.636454 TGACAAAGTTTATACTCCCTCCAT 57.364 37.500 0.00 0.00 31.99 3.41
393 399 7.027874 TGACAAAGTTTATACTCCCTCCATT 57.972 36.000 0.00 0.00 31.99 3.16
394 400 6.884295 TGACAAAGTTTATACTCCCTCCATTG 59.116 38.462 0.00 0.00 31.99 2.82
395 401 6.790319 ACAAAGTTTATACTCCCTCCATTGT 58.210 36.000 0.00 0.00 31.99 2.71
396 402 7.238710 ACAAAGTTTATACTCCCTCCATTGTT 58.761 34.615 0.00 0.00 31.99 2.83
397 403 8.387813 ACAAAGTTTATACTCCCTCCATTGTTA 58.612 33.333 0.00 0.00 31.99 2.41
398 404 9.238368 CAAAGTTTATACTCCCTCCATTGTTAA 57.762 33.333 0.00 0.00 31.99 2.01
399 405 9.816787 AAAGTTTATACTCCCTCCATTGTTAAA 57.183 29.630 0.00 0.00 31.99 1.52
400 406 9.990868 AAGTTTATACTCCCTCCATTGTTAAAT 57.009 29.630 0.00 0.00 31.99 1.40
408 414 9.004231 ACTCCCTCCATTGTTAAATATAAGTCT 57.996 33.333 0.00 0.00 0.00 3.24
409 415 9.853177 CTCCCTCCATTGTTAAATATAAGTCTT 57.147 33.333 0.00 0.00 0.00 3.01
442 448 5.779922 TCCAATATGGACTACATACGAAGC 58.220 41.667 0.00 0.00 42.67 3.86
443 449 5.303333 TCCAATATGGACTACATACGAAGCA 59.697 40.000 0.00 0.00 42.67 3.91
444 450 5.989168 CCAATATGGACTACATACGAAGCAA 59.011 40.000 0.00 0.00 44.41 3.91
445 451 6.481976 CCAATATGGACTACATACGAAGCAAA 59.518 38.462 0.00 0.00 44.41 3.68
446 452 7.011950 CCAATATGGACTACATACGAAGCAAAA 59.988 37.037 0.00 0.00 44.41 2.44
447 453 8.559536 CAATATGGACTACATACGAAGCAAAAT 58.440 33.333 0.00 0.00 44.41 1.82
448 454 5.794687 TGGACTACATACGAAGCAAAATG 57.205 39.130 0.00 0.00 0.00 2.32
449 455 5.483811 TGGACTACATACGAAGCAAAATGA 58.516 37.500 0.00 0.00 0.00 2.57
450 456 5.580691 TGGACTACATACGAAGCAAAATGAG 59.419 40.000 0.00 0.00 0.00 2.90
451 457 5.581085 GGACTACATACGAAGCAAAATGAGT 59.419 40.000 0.00 0.00 0.00 3.41
452 458 6.408858 ACTACATACGAAGCAAAATGAGTG 57.591 37.500 0.00 0.00 0.00 3.51
453 459 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
454 460 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
455 461 5.689819 ACATACGAAGCAAAATGAGTGAAC 58.310 37.500 0.00 0.00 0.00 3.18
456 462 3.626028 ACGAAGCAAAATGAGTGAACC 57.374 42.857 0.00 0.00 0.00 3.62
457 463 3.214328 ACGAAGCAAAATGAGTGAACCT 58.786 40.909 0.00 0.00 0.00 3.50
458 464 4.385825 ACGAAGCAAAATGAGTGAACCTA 58.614 39.130 0.00 0.00 0.00 3.08
459 465 4.213482 ACGAAGCAAAATGAGTGAACCTAC 59.787 41.667 0.00 0.00 0.00 3.18
460 466 4.213270 CGAAGCAAAATGAGTGAACCTACA 59.787 41.667 0.00 0.00 0.00 2.74
461 467 5.438761 AAGCAAAATGAGTGAACCTACAC 57.561 39.130 0.00 0.00 40.60 2.90
475 481 9.036980 AGTGAACCTACACTCTAAAATATGTCT 57.963 33.333 0.00 0.00 46.36 3.41
542 548 7.811713 ACTTGTATTTAGAAACGGAGTGAGTAC 59.188 37.037 0.00 0.00 45.00 2.73
543 549 7.458409 TGTATTTAGAAACGGAGTGAGTACT 57.542 36.000 0.00 0.00 45.00 2.73
544 550 7.889469 TGTATTTAGAAACGGAGTGAGTACTT 58.111 34.615 0.00 0.00 45.00 2.24
545 551 8.025445 TGTATTTAGAAACGGAGTGAGTACTTC 58.975 37.037 0.00 0.00 45.00 3.01
546 552 6.395426 TTTAGAAACGGAGTGAGTACTTCA 57.605 37.500 0.00 0.00 45.00 3.02
547 553 6.585695 TTAGAAACGGAGTGAGTACTTCAT 57.414 37.500 0.00 0.00 45.00 2.57
548 554 4.810790 AGAAACGGAGTGAGTACTTCATG 58.189 43.478 0.00 0.00 45.00 3.07
636 642 6.861065 CAGTGGTTTTTGTACTGTGAGTAT 57.139 37.500 0.00 0.00 37.59 2.12
637 643 7.259290 CAGTGGTTTTTGTACTGTGAGTATT 57.741 36.000 0.00 0.00 37.59 1.89
638 644 7.132213 CAGTGGTTTTTGTACTGTGAGTATTG 58.868 38.462 0.00 0.00 37.59 1.90
639 645 7.011950 CAGTGGTTTTTGTACTGTGAGTATTGA 59.988 37.037 0.00 0.00 37.59 2.57
640 646 7.719633 AGTGGTTTTTGTACTGTGAGTATTGAT 59.280 33.333 0.00 0.00 32.65 2.57
641 647 8.349983 GTGGTTTTTGTACTGTGAGTATTGATT 58.650 33.333 0.00 0.00 32.65 2.57
642 648 8.908903 TGGTTTTTGTACTGTGAGTATTGATTT 58.091 29.630 0.00 0.00 32.65 2.17
643 649 9.744468 GGTTTTTGTACTGTGAGTATTGATTTT 57.256 29.630 0.00 0.00 32.65 1.82
1066 1091 4.103103 TCGAGAGCAGCGACACCG 62.103 66.667 0.00 0.00 39.16 4.94
1151 1184 0.179081 GTCTACCCGCTGATTGGTCC 60.179 60.000 0.00 0.00 36.04 4.46
1167 1200 1.611491 GGTCCGGTTTGATTTTGCTGA 59.389 47.619 0.00 0.00 0.00 4.26
1192 1225 1.015085 TGCGTCCGGTAAATCGTTGG 61.015 55.000 0.00 0.00 0.00 3.77
1211 1246 4.971125 GTGCCGCTCCTATCCCGC 62.971 72.222 0.00 0.00 0.00 6.13
1240 1285 2.420687 CCATCTGGTTCTGCCCTAGTTC 60.421 54.545 0.00 0.00 36.04 3.01
1247 1292 4.020485 TGGTTCTGCCCTAGTTCTTTAGAC 60.020 45.833 0.00 0.00 36.04 2.59
1311 1356 2.403378 GCGTTTATTCGGGCAGGCA 61.403 57.895 0.00 0.00 0.00 4.75
1312 1357 1.427819 CGTTTATTCGGGCAGGCAC 59.572 57.895 0.00 0.00 0.00 5.01
1313 1358 1.024579 CGTTTATTCGGGCAGGCACT 61.025 55.000 0.00 0.00 43.88 4.40
1314 1359 0.733150 GTTTATTCGGGCAGGCACTC 59.267 55.000 0.00 0.00 34.60 3.51
1315 1360 0.742990 TTTATTCGGGCAGGCACTCG 60.743 55.000 0.00 0.00 34.60 4.18
1316 1361 2.587322 TTATTCGGGCAGGCACTCGG 62.587 60.000 0.00 0.00 34.60 4.63
1320 1365 4.021925 GGGCAGGCACTCGGAGTT 62.022 66.667 8.18 0.00 34.60 3.01
1321 1366 2.743928 GGCAGGCACTCGGAGTTG 60.744 66.667 8.18 5.94 34.60 3.16
1334 1379 1.602377 CGGAGTTGTGTTCAGGTTTCC 59.398 52.381 0.00 0.00 0.00 3.13
1344 1389 4.276055 AGGTTTCCTGGCAGGGAT 57.724 55.556 32.23 7.21 35.59 3.85
1345 1390 1.693640 AGGTTTCCTGGCAGGGATG 59.306 57.895 32.23 7.97 35.59 3.51
1351 1396 0.758734 TCCTGGCAGGGATGTTATCG 59.241 55.000 32.23 3.67 35.59 2.92
1354 1399 1.600916 GGCAGGGATGTTATCGGGC 60.601 63.158 0.00 0.00 0.00 6.13
1361 1406 1.865340 GGATGTTATCGGGCGAAGTTC 59.135 52.381 0.00 0.00 0.00 3.01
1369 1414 2.761195 GGGCGAAGTTCGGATTGCC 61.761 63.158 25.55 17.11 40.84 4.52
1449 1496 1.064060 GGCTGCGCCTAAAGTTGTATG 59.936 52.381 4.18 0.00 46.69 2.39
1477 1526 3.943671 TCACCCCTTTCTTCTGTCAAA 57.056 42.857 0.00 0.00 0.00 2.69
1478 1527 4.453480 TCACCCCTTTCTTCTGTCAAAT 57.547 40.909 0.00 0.00 0.00 2.32
1479 1528 4.803452 TCACCCCTTTCTTCTGTCAAATT 58.197 39.130 0.00 0.00 0.00 1.82
1480 1529 5.947663 TCACCCCTTTCTTCTGTCAAATTA 58.052 37.500 0.00 0.00 0.00 1.40
1481 1530 6.003950 TCACCCCTTTCTTCTGTCAAATTAG 58.996 40.000 0.00 0.00 0.00 1.73
1486 1535 9.243105 CCCCTTTCTTCTGTCAAATTAGATTAA 57.757 33.333 0.00 0.00 0.00 1.40
1544 1593 4.009370 AGGTAGTTCCTCTTTGTGAAGC 57.991 45.455 0.00 0.00 44.42 3.86
1552 1602 3.065655 CCTCTTTGTGAAGCTGAGACTG 58.934 50.000 0.00 0.00 32.75 3.51
1553 1603 3.494048 CCTCTTTGTGAAGCTGAGACTGT 60.494 47.826 0.00 0.00 32.75 3.55
1567 1628 7.316640 AGCTGAGACTGTAGTTGTATACAAAG 58.683 38.462 19.63 15.13 37.63 2.77
1608 1669 9.080097 GTATAGTGGGTATCTGATTCAGTAACT 57.920 37.037 13.23 10.65 32.61 2.24
1688 1749 3.124051 TTGTGCTGGTGCTGCTCCT 62.124 57.895 20.19 0.00 40.48 3.69
1697 1758 1.661341 GTGCTGCTCCTTGTGATAGG 58.339 55.000 0.00 0.00 36.59 2.57
1750 1811 5.582953 TGTTCCCCAAGAAAATGATGAGAT 58.417 37.500 0.00 0.00 35.85 2.75
1751 1812 5.653769 TGTTCCCCAAGAAAATGATGAGATC 59.346 40.000 0.00 0.00 35.85 2.75
1752 1813 5.455392 TCCCCAAGAAAATGATGAGATCA 57.545 39.130 0.00 0.00 44.55 2.92
1753 1814 5.195940 TCCCCAAGAAAATGATGAGATCAC 58.804 41.667 0.00 0.00 43.01 3.06
1754 1815 5.044624 TCCCCAAGAAAATGATGAGATCACT 60.045 40.000 0.00 0.00 43.01 3.41
1755 1816 5.067413 CCCCAAGAAAATGATGAGATCACTG 59.933 44.000 0.00 0.00 43.01 3.66
1757 1818 5.450137 CCAAGAAAATGATGAGATCACTGCC 60.450 44.000 0.00 0.00 43.01 4.85
1767 1828 2.939103 GAGATCACTGCCTTTATGCGTT 59.061 45.455 0.00 0.00 0.00 4.84
1782 1843 7.481798 CCTTTATGCGTTTCATTCTTGTAGTTC 59.518 37.037 0.00 0.00 36.63 3.01
1783 1844 4.742438 TGCGTTTCATTCTTGTAGTTCC 57.258 40.909 0.00 0.00 0.00 3.62
1784 1845 4.385825 TGCGTTTCATTCTTGTAGTTCCT 58.614 39.130 0.00 0.00 0.00 3.36
1785 1846 5.543714 TGCGTTTCATTCTTGTAGTTCCTA 58.456 37.500 0.00 0.00 0.00 2.94
1786 1847 6.170506 TGCGTTTCATTCTTGTAGTTCCTAT 58.829 36.000 0.00 0.00 0.00 2.57
1787 1848 6.653320 TGCGTTTCATTCTTGTAGTTCCTATT 59.347 34.615 0.00 0.00 0.00 1.73
1788 1849 7.820386 TGCGTTTCATTCTTGTAGTTCCTATTA 59.180 33.333 0.00 0.00 0.00 0.98
1789 1850 8.662141 GCGTTTCATTCTTGTAGTTCCTATTAA 58.338 33.333 0.00 0.00 0.00 1.40
1807 1868 9.952030 TCCTATTAATCTGTTACAAATCACACA 57.048 29.630 0.00 0.00 0.00 3.72
1811 1872 8.628630 TTAATCTGTTACAAATCACACATCCA 57.371 30.769 0.00 0.00 0.00 3.41
1812 1873 7.707624 AATCTGTTACAAATCACACATCCAT 57.292 32.000 0.00 0.00 0.00 3.41
1813 1874 6.741992 TCTGTTACAAATCACACATCCATC 57.258 37.500 0.00 0.00 0.00 3.51
1814 1875 5.647658 TCTGTTACAAATCACACATCCATCC 59.352 40.000 0.00 0.00 0.00 3.51
1815 1876 5.569355 TGTTACAAATCACACATCCATCCT 58.431 37.500 0.00 0.00 0.00 3.24
1816 1877 6.009589 TGTTACAAATCACACATCCATCCTT 58.990 36.000 0.00 0.00 0.00 3.36
1817 1878 6.493115 TGTTACAAATCACACATCCATCCTTT 59.507 34.615 0.00 0.00 0.00 3.11
1818 1879 7.667635 TGTTACAAATCACACATCCATCCTTTA 59.332 33.333 0.00 0.00 0.00 1.85
1819 1880 8.686334 GTTACAAATCACACATCCATCCTTTAT 58.314 33.333 0.00 0.00 0.00 1.40
1820 1881 7.104043 ACAAATCACACATCCATCCTTTATG 57.896 36.000 0.00 0.00 35.15 1.90
1821 1882 5.779529 AATCACACATCCATCCTTTATGC 57.220 39.130 0.00 0.00 33.92 3.14
1822 1883 4.508551 TCACACATCCATCCTTTATGCT 57.491 40.909 0.00 0.00 33.92 3.79
1823 1884 4.858850 TCACACATCCATCCTTTATGCTT 58.141 39.130 0.00 0.00 33.92 3.91
1824 1885 5.263599 TCACACATCCATCCTTTATGCTTT 58.736 37.500 0.00 0.00 33.92 3.51
1825 1886 5.716228 TCACACATCCATCCTTTATGCTTTT 59.284 36.000 0.00 0.00 33.92 2.27
1826 1887 6.038356 CACACATCCATCCTTTATGCTTTTC 58.962 40.000 0.00 0.00 33.92 2.29
1827 1888 5.716228 ACACATCCATCCTTTATGCTTTTCA 59.284 36.000 0.00 0.00 33.92 2.69
1828 1889 6.038356 CACATCCATCCTTTATGCTTTTCAC 58.962 40.000 0.00 0.00 33.92 3.18
1829 1890 5.954150 ACATCCATCCTTTATGCTTTTCACT 59.046 36.000 0.00 0.00 33.92 3.41
1830 1891 5.902613 TCCATCCTTTATGCTTTTCACTG 57.097 39.130 0.00 0.00 33.92 3.66
1831 1892 5.324409 TCCATCCTTTATGCTTTTCACTGT 58.676 37.500 0.00 0.00 33.92 3.55
1832 1893 5.774690 TCCATCCTTTATGCTTTTCACTGTT 59.225 36.000 0.00 0.00 33.92 3.16
1833 1894 5.865552 CCATCCTTTATGCTTTTCACTGTTG 59.134 40.000 0.00 0.00 33.92 3.33
1834 1895 6.449698 CATCCTTTATGCTTTTCACTGTTGT 58.550 36.000 0.00 0.00 0.00 3.32
1835 1896 7.309133 CCATCCTTTATGCTTTTCACTGTTGTA 60.309 37.037 0.00 0.00 33.92 2.41
1836 1897 7.759489 TCCTTTATGCTTTTCACTGTTGTAT 57.241 32.000 0.00 0.00 0.00 2.29
1837 1898 8.856153 TCCTTTATGCTTTTCACTGTTGTATA 57.144 30.769 0.00 0.00 0.00 1.47
1838 1899 9.290988 TCCTTTATGCTTTTCACTGTTGTATAA 57.709 29.630 0.00 0.00 0.00 0.98
1844 1905 8.572828 TGCTTTTCACTGTTGTATAATTGTTG 57.427 30.769 0.00 0.00 0.00 3.33
1845 1906 8.194104 TGCTTTTCACTGTTGTATAATTGTTGT 58.806 29.630 0.00 0.00 0.00 3.32
1846 1907 9.672086 GCTTTTCACTGTTGTATAATTGTTGTA 57.328 29.630 0.00 0.00 0.00 2.41
1850 1911 9.549078 TTCACTGTTGTATAATTGTTGTAGTGA 57.451 29.630 0.00 0.00 39.02 3.41
1851 1912 9.549078 TCACTGTTGTATAATTGTTGTAGTGAA 57.451 29.630 0.00 0.00 38.18 3.18
1852 1913 9.811655 CACTGTTGTATAATTGTTGTAGTGAAG 57.188 33.333 0.00 0.00 35.15 3.02
1853 1914 8.999431 ACTGTTGTATAATTGTTGTAGTGAAGG 58.001 33.333 0.00 0.00 0.00 3.46
1862 1923 5.080969 TGTTGTAGTGAAGGTACCTATGC 57.919 43.478 16.67 8.60 0.00 3.14
1866 1927 5.269991 TGTAGTGAAGGTACCTATGCTCTT 58.730 41.667 16.67 0.00 0.00 2.85
1878 1939 5.942872 ACCTATGCTCTTTTTCAAATCACG 58.057 37.500 0.00 0.00 0.00 4.35
1883 1944 3.609807 GCTCTTTTTCAAATCACGCATCC 59.390 43.478 0.00 0.00 0.00 3.51
1892 1953 2.315925 ATCACGCATCCATTCTTCGT 57.684 45.000 0.00 0.00 0.00 3.85
1893 1954 1.640428 TCACGCATCCATTCTTCGTC 58.360 50.000 0.00 0.00 0.00 4.20
1894 1955 1.067213 TCACGCATCCATTCTTCGTCA 60.067 47.619 0.00 0.00 0.00 4.35
1895 1956 1.935873 CACGCATCCATTCTTCGTCAT 59.064 47.619 0.00 0.00 0.00 3.06
1902 1990 3.849911 TCCATTCTTCGTCATGTCTGTC 58.150 45.455 0.00 0.00 0.00 3.51
1905 1993 3.726291 TTCTTCGTCATGTCTGTCACA 57.274 42.857 0.00 0.00 40.18 3.58
1906 1994 3.288809 TCTTCGTCATGTCTGTCACAG 57.711 47.619 0.00 0.00 38.85 3.66
1907 1995 1.723542 CTTCGTCATGTCTGTCACAGC 59.276 52.381 0.00 0.00 38.85 4.40
1928 2016 5.359009 CAGCTGTGACCATAATCCAGAAAAT 59.641 40.000 5.25 0.00 0.00 1.82
1929 2017 6.543465 CAGCTGTGACCATAATCCAGAAAATA 59.457 38.462 5.25 0.00 0.00 1.40
1930 2018 7.067372 CAGCTGTGACCATAATCCAGAAAATAA 59.933 37.037 5.25 0.00 0.00 1.40
1932 2020 8.416329 GCTGTGACCATAATCCAGAAAATAATT 58.584 33.333 0.00 0.00 0.00 1.40
1933 2021 9.956720 CTGTGACCATAATCCAGAAAATAATTC 57.043 33.333 0.00 0.00 0.00 2.17
1934 2022 9.699410 TGTGACCATAATCCAGAAAATAATTCT 57.301 29.630 0.00 0.00 0.00 2.40
1935 2023 9.956720 GTGACCATAATCCAGAAAATAATTCTG 57.043 33.333 10.48 10.48 44.05 3.02
1936 2024 8.632679 TGACCATAATCCAGAAAATAATTCTGC 58.367 33.333 11.71 0.00 43.33 4.26
1937 2025 8.537728 ACCATAATCCAGAAAATAATTCTGCA 57.462 30.769 11.71 0.00 43.33 4.41
1938 2026 8.416329 ACCATAATCCAGAAAATAATTCTGCAC 58.584 33.333 11.71 0.00 43.33 4.57
1939 2027 8.636213 CCATAATCCAGAAAATAATTCTGCACT 58.364 33.333 11.71 2.37 43.33 4.40
1940 2028 9.459640 CATAATCCAGAAAATAATTCTGCACTG 57.540 33.333 11.71 0.00 43.33 3.66
1941 2029 5.314923 TCCAGAAAATAATTCTGCACTGC 57.685 39.130 11.71 0.00 43.33 4.40
1942 2030 4.100529 CCAGAAAATAATTCTGCACTGCG 58.899 43.478 11.71 0.00 43.33 5.18
1943 2031 4.142622 CCAGAAAATAATTCTGCACTGCGA 60.143 41.667 11.71 0.00 43.33 5.10
1944 2032 5.393124 CAGAAAATAATTCTGCACTGCGAA 58.607 37.500 5.36 9.65 39.36 4.70
1945 2033 5.284660 CAGAAAATAATTCTGCACTGCGAAC 59.715 40.000 5.36 0.00 39.36 3.95
1946 2034 5.182001 AGAAAATAATTCTGCACTGCGAACT 59.818 36.000 9.49 3.60 0.00 3.01
1947 2035 5.376854 AAATAATTCTGCACTGCGAACTT 57.623 34.783 9.49 8.36 0.00 2.66
1948 2036 5.376854 AATAATTCTGCACTGCGAACTTT 57.623 34.783 9.49 5.57 0.00 2.66
1949 2037 2.693797 ATTCTGCACTGCGAACTTTG 57.306 45.000 9.49 0.00 0.00 2.77
1950 2038 0.029300 TTCTGCACTGCGAACTTTGC 59.971 50.000 0.00 0.00 35.45 3.68
1951 2039 0.815213 TCTGCACTGCGAACTTTGCT 60.815 50.000 2.63 0.00 35.91 3.91
1952 2040 0.029834 CTGCACTGCGAACTTTGCTT 59.970 50.000 2.63 0.00 35.91 3.91
1953 2041 0.455410 TGCACTGCGAACTTTGCTTT 59.545 45.000 2.63 0.00 35.91 3.51
1954 2042 1.123655 GCACTGCGAACTTTGCTTTC 58.876 50.000 2.63 0.00 32.00 2.62
1955 2043 1.268743 GCACTGCGAACTTTGCTTTCT 60.269 47.619 2.63 0.00 32.00 2.52
1956 2044 2.796032 GCACTGCGAACTTTGCTTTCTT 60.796 45.455 2.63 0.00 32.00 2.52
1957 2045 3.038710 CACTGCGAACTTTGCTTTCTTC 58.961 45.455 2.63 0.00 0.00 2.87
1958 2046 2.682856 ACTGCGAACTTTGCTTTCTTCA 59.317 40.909 2.63 0.00 0.00 3.02
1959 2047 3.038710 CTGCGAACTTTGCTTTCTTCAC 58.961 45.455 2.63 0.00 0.00 3.18
1960 2048 2.682856 TGCGAACTTTGCTTTCTTCACT 59.317 40.909 2.63 0.00 0.00 3.41
1961 2049 3.128589 TGCGAACTTTGCTTTCTTCACTT 59.871 39.130 2.63 0.00 0.00 3.16
1962 2050 3.483558 GCGAACTTTGCTTTCTTCACTTG 59.516 43.478 0.00 0.00 0.00 3.16
1963 2051 4.037690 CGAACTTTGCTTTCTTCACTTGG 58.962 43.478 0.00 0.00 0.00 3.61
1964 2052 3.443099 ACTTTGCTTTCTTCACTTGGC 57.557 42.857 0.00 0.00 0.00 4.52
1965 2053 2.760092 ACTTTGCTTTCTTCACTTGGCA 59.240 40.909 0.00 0.00 0.00 4.92
1966 2054 3.385755 ACTTTGCTTTCTTCACTTGGCAT 59.614 39.130 0.00 0.00 0.00 4.40
1967 2055 4.141869 ACTTTGCTTTCTTCACTTGGCATT 60.142 37.500 0.00 0.00 0.00 3.56
1968 2056 3.374220 TGCTTTCTTCACTTGGCATTG 57.626 42.857 0.00 0.00 0.00 2.82
1969 2057 2.694628 TGCTTTCTTCACTTGGCATTGT 59.305 40.909 0.00 0.00 0.00 2.71
1970 2058 3.888323 TGCTTTCTTCACTTGGCATTGTA 59.112 39.130 0.00 0.00 0.00 2.41
1971 2059 4.523943 TGCTTTCTTCACTTGGCATTGTAT 59.476 37.500 0.00 0.00 0.00 2.29
1972 2060 5.098211 GCTTTCTTCACTTGGCATTGTATC 58.902 41.667 0.00 0.00 0.00 2.24
1973 2061 5.335897 GCTTTCTTCACTTGGCATTGTATCA 60.336 40.000 0.00 0.00 0.00 2.15
1974 2062 6.647334 TTTCTTCACTTGGCATTGTATCAA 57.353 33.333 0.00 0.00 0.00 2.57
1975 2063 5.885230 TCTTCACTTGGCATTGTATCAAG 57.115 39.130 11.91 11.91 42.37 3.02
1978 2066 7.337938 TCTTCACTTGGCATTGTATCAAGATA 58.662 34.615 17.10 0.00 39.97 1.98
1981 2069 5.530171 CACTTGGCATTGTATCAAGATAGCT 59.470 40.000 17.10 0.00 39.97 3.32
1983 2071 6.708054 ACTTGGCATTGTATCAAGATAGCTAC 59.292 38.462 17.10 0.00 39.97 3.58
1993 2081 4.697514 TCAAGATAGCTACTGCATTGGTC 58.302 43.478 0.00 0.00 42.74 4.02
2007 2095 0.698238 TTGGTCAAGTGGCAGGCTAT 59.302 50.000 0.00 0.00 0.00 2.97
2008 2096 1.578897 TGGTCAAGTGGCAGGCTATA 58.421 50.000 0.00 0.00 0.00 1.31
2009 2097 2.126882 TGGTCAAGTGGCAGGCTATAT 58.873 47.619 0.00 0.00 0.00 0.86
2015 2103 2.541466 AGTGGCAGGCTATATCCTACC 58.459 52.381 5.07 5.07 39.64 3.18
2023 2111 3.835395 AGGCTATATCCTACCTCAAGCAC 59.165 47.826 0.00 0.00 33.95 4.40
2024 2112 3.835395 GGCTATATCCTACCTCAAGCACT 59.165 47.826 0.00 0.00 0.00 4.40
2025 2113 4.284746 GGCTATATCCTACCTCAAGCACTT 59.715 45.833 0.00 0.00 0.00 3.16
2266 2361 2.388232 GCCCACCGACACGATTGAC 61.388 63.158 0.00 0.00 0.00 3.18
2323 2418 1.545428 CCTCCTGTGCAGCAAAGGTAA 60.545 52.381 28.27 11.73 39.74 2.85
2324 2419 2.440409 CTCCTGTGCAGCAAAGGTAAT 58.560 47.619 28.27 0.00 39.74 1.89
2325 2420 3.609853 CTCCTGTGCAGCAAAGGTAATA 58.390 45.455 28.27 10.67 39.74 0.98
2329 2424 4.022416 CCTGTGCAGCAAAGGTAATAACAA 60.022 41.667 22.54 0.00 34.30 2.83
2337 2432 5.716703 AGCAAAGGTAATAACAAAGCCTGAT 59.283 36.000 0.00 0.00 0.00 2.90
2338 2433 6.889722 AGCAAAGGTAATAACAAAGCCTGATA 59.110 34.615 0.00 0.00 0.00 2.15
2339 2434 7.561356 AGCAAAGGTAATAACAAAGCCTGATAT 59.439 33.333 0.00 0.00 0.00 1.63
2340 2435 8.197439 GCAAAGGTAATAACAAAGCCTGATATT 58.803 33.333 4.87 4.87 37.00 1.28
2344 2439 9.780186 AGGTAATAACAAAGCCTGATATTACTC 57.220 33.333 22.35 16.80 46.01 2.59
2381 2499 6.084326 TCTACGTGCATTATATTCTGCTCA 57.916 37.500 0.00 0.00 39.16 4.26
2403 2525 5.305386 TCAAATGAACTCTCTCTGTTCCTCA 59.695 40.000 0.00 0.00 42.04 3.86
2416 2538 7.548097 TCTCTGTTCCTCATATCTGTAACAAC 58.452 38.462 0.00 0.00 0.00 3.32
2426 2548 2.743538 GTAACAACGGCGGGGGAC 60.744 66.667 13.24 1.86 0.00 4.46
2437 2560 0.609662 GCGGGGGACACTTTGTAGTA 59.390 55.000 0.00 0.00 31.96 1.82
2443 2566 4.961099 GGGGGACACTTTGTAGTATCTAGT 59.039 45.833 0.00 0.00 31.96 2.57
2466 2589 1.146263 GGATGGCCCAGACTAACGG 59.854 63.158 0.00 0.00 34.14 4.44
2498 2621 2.086869 TCTGCTTGCAGGCTGATTTAC 58.913 47.619 23.46 0.00 35.75 2.01
2752 2879 9.330063 TCTGCCTATATGATTTGACAAAACTAG 57.670 33.333 4.41 1.15 0.00 2.57
2759 2886 5.507077 TGATTTGACAAAACTAGTCGCAAC 58.493 37.500 4.41 0.00 38.83 4.17
2810 2937 6.693545 GCTGCGTAGTAAGATCCATATATCAC 59.306 42.308 1.53 0.00 0.00 3.06
2832 2961 4.744631 ACCTGAATTTTGATTGTGTTTCGC 59.255 37.500 0.00 0.00 0.00 4.70
2853 2982 3.823304 GCCACTCTTTCCTGAATTCAAGT 59.177 43.478 9.88 6.02 0.00 3.16
2859 2996 7.594015 CACTCTTTCCTGAATTCAAGTTTGATG 59.406 37.037 9.88 0.00 37.00 3.07
2885 3023 5.301298 AGGGCTAAATGCAGAAAGATTGATC 59.699 40.000 0.00 0.00 45.15 2.92
2894 3032 7.572523 TGCAGAAAGATTGATCGGAAAATAT 57.427 32.000 0.00 0.00 0.00 1.28
2895 3033 8.675705 TGCAGAAAGATTGATCGGAAAATATA 57.324 30.769 0.00 0.00 0.00 0.86
2897 3035 9.950680 GCAGAAAGATTGATCGGAAAATATAAA 57.049 29.630 0.00 0.00 0.00 1.40
2943 3081 3.762779 CCGAATCCTGAAAACATTCTGC 58.237 45.455 0.00 0.00 0.00 4.26
2953 3359 2.936919 AACATTCTGCTCTGGACACA 57.063 45.000 0.00 0.00 0.00 3.72
2959 3365 1.143305 CTGCTCTGGACACAAGAACG 58.857 55.000 0.00 0.00 0.00 3.95
2982 3388 4.752661 GTGTTCGCACATACCCTTTTAA 57.247 40.909 0.00 0.00 46.85 1.52
2986 3392 5.299782 TGTTCGCACATACCCTTTTAACTTT 59.700 36.000 0.00 0.00 0.00 2.66
3017 3423 8.786898 TCATAAACATTTCAGAGAAGAACCAAG 58.213 33.333 0.00 0.00 0.00 3.61
3019 3425 4.464008 ACATTTCAGAGAAGAACCAAGCA 58.536 39.130 0.00 0.00 0.00 3.91
3036 3443 5.902431 ACCAAGCATACTAGATCTTTCCTCT 59.098 40.000 0.00 0.00 0.00 3.69
3067 3474 1.328430 ACTGGTAAGCTACGGGCCTC 61.328 60.000 0.84 0.00 43.05 4.70
3121 3531 0.545309 AGCTGCTTACAGTCCTCCCA 60.545 55.000 0.00 0.00 46.30 4.37
3122 3532 0.324943 GCTGCTTACAGTCCTCCCAA 59.675 55.000 0.00 0.00 46.30 4.12
3325 3735 1.578206 GCTTCACTTCCGTGGGCTTC 61.578 60.000 0.00 0.00 41.53 3.86
3403 3813 3.951769 ATGCCCCTTGCTGCTCCAC 62.952 63.158 0.00 0.00 42.00 4.02
3472 3882 2.550180 GAGTTGGTCCTTGAAGCTGTTC 59.450 50.000 0.00 0.00 0.00 3.18
3484 3894 0.106519 AGCTGTTCCTGCCAACAACT 60.107 50.000 0.00 0.00 35.83 3.16
3487 3897 2.023673 CTGTTCCTGCCAACAACTTGA 58.976 47.619 0.00 0.00 35.83 3.02
3490 3900 2.887152 GTTCCTGCCAACAACTTGATCT 59.113 45.455 0.00 0.00 0.00 2.75
3530 3940 2.555757 ACAACTTGATCCTTGAAGCTGC 59.444 45.455 0.00 0.00 0.00 5.25
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 25 4.156008 GGAAAATTTATATCCCGCGCAGAT 59.844 41.667 8.75 11.84 0.00 2.90
25 27 3.502211 AGGAAAATTTATATCCCGCGCAG 59.498 43.478 8.75 0.00 33.55 5.18
28 30 6.872020 TCTTAGAGGAAAATTTATATCCCGCG 59.128 38.462 0.00 0.00 33.55 6.46
36 38 7.715249 TGCACGCTATCTTAGAGGAAAATTTAT 59.285 33.333 0.00 0.00 0.00 1.40
37 39 7.045416 TGCACGCTATCTTAGAGGAAAATTTA 58.955 34.615 0.00 0.00 0.00 1.40
57 59 5.460646 ACATTCAAAGGACTAATTTGCACG 58.539 37.500 0.00 0.00 37.52 5.34
65 67 7.343316 TCCTTGGAAAAACATTCAAAGGACTAA 59.657 33.333 18.72 2.32 46.43 2.24
68 70 5.912892 TCCTTGGAAAAACATTCAAAGGAC 58.087 37.500 18.72 0.00 46.43 3.85
71 73 9.762933 TTAGAATCCTTGGAAAAACATTCAAAG 57.237 29.630 0.00 0.00 30.96 2.77
165 171 1.135721 ACGTTACGTAATGGAGGGAGC 59.864 52.381 26.73 4.87 38.73 4.70
174 180 8.145316 ACAAAATATGCCATACGTTACGTAAT 57.855 30.769 21.39 12.52 45.39 1.89
177 183 6.425577 AACAAAATATGCCATACGTTACGT 57.574 33.333 16.31 16.31 44.35 3.57
179 185 8.794406 CAGAAAACAAAATATGCCATACGTTAC 58.206 33.333 0.00 0.00 0.00 2.50
183 189 8.459521 TTTCAGAAAACAAAATATGCCATACG 57.540 30.769 0.00 0.00 0.00 3.06
187 193 7.495901 TGACTTTCAGAAAACAAAATATGCCA 58.504 30.769 0.00 0.00 0.00 4.92
202 208 8.055279 AGAAAAAGACATGTTTGACTTTCAGA 57.945 30.769 9.85 0.00 43.72 3.27
226 232 7.601073 TTGTCAAATGTAGACTATCTGCAAG 57.399 36.000 0.63 0.00 42.19 4.01
246 252 6.183360 GCAATGGAGGGAGTATAAACTTTGTC 60.183 42.308 0.00 0.00 35.56 3.18
248 254 5.888161 AGCAATGGAGGGAGTATAAACTTTG 59.112 40.000 0.00 0.00 35.56 2.77
252 258 9.740710 ATATTTAGCAATGGAGGGAGTATAAAC 57.259 33.333 0.00 0.00 0.00 2.01
260 266 9.881773 AAAGATTTATATTTAGCAATGGAGGGA 57.118 29.630 0.00 0.00 0.00 4.20
299 305 8.347771 TCGTTTTGCTTCGTATGTAGTCTATAT 58.652 33.333 0.00 0.00 0.00 0.86
300 306 7.696755 TCGTTTTGCTTCGTATGTAGTCTATA 58.303 34.615 0.00 0.00 0.00 1.31
301 307 6.558009 TCGTTTTGCTTCGTATGTAGTCTAT 58.442 36.000 0.00 0.00 0.00 1.98
302 308 5.941733 TCGTTTTGCTTCGTATGTAGTCTA 58.058 37.500 0.00 0.00 0.00 2.59
303 309 4.801891 TCGTTTTGCTTCGTATGTAGTCT 58.198 39.130 0.00 0.00 0.00 3.24
304 310 4.490479 GCTCGTTTTGCTTCGTATGTAGTC 60.490 45.833 0.00 0.00 0.00 2.59
305 311 3.367025 GCTCGTTTTGCTTCGTATGTAGT 59.633 43.478 0.00 0.00 0.00 2.73
306 312 3.539592 CGCTCGTTTTGCTTCGTATGTAG 60.540 47.826 0.00 0.00 0.00 2.74
307 313 2.343246 CGCTCGTTTTGCTTCGTATGTA 59.657 45.455 0.00 0.00 0.00 2.29
308 314 1.126113 CGCTCGTTTTGCTTCGTATGT 59.874 47.619 0.00 0.00 0.00 2.29
309 315 1.388768 TCGCTCGTTTTGCTTCGTATG 59.611 47.619 0.00 0.00 0.00 2.39
310 316 1.705256 TCGCTCGTTTTGCTTCGTAT 58.295 45.000 0.00 0.00 0.00 3.06
311 317 1.489574 TTCGCTCGTTTTGCTTCGTA 58.510 45.000 0.00 0.00 0.00 3.43
312 318 0.865769 ATTCGCTCGTTTTGCTTCGT 59.134 45.000 0.00 0.00 0.00 3.85
313 319 1.126846 AGATTCGCTCGTTTTGCTTCG 59.873 47.619 0.00 0.00 0.00 3.79
314 320 2.882742 AGATTCGCTCGTTTTGCTTC 57.117 45.000 0.00 0.00 0.00 3.86
315 321 3.064207 TGTAGATTCGCTCGTTTTGCTT 58.936 40.909 0.00 0.00 0.00 3.91
316 322 2.412089 GTGTAGATTCGCTCGTTTTGCT 59.588 45.455 0.00 0.00 0.00 3.91
317 323 2.412089 AGTGTAGATTCGCTCGTTTTGC 59.588 45.455 0.00 0.00 0.00 3.68
318 324 3.921021 AGAGTGTAGATTCGCTCGTTTTG 59.079 43.478 0.00 0.00 45.91 2.44
319 325 4.175787 AGAGTGTAGATTCGCTCGTTTT 57.824 40.909 0.00 0.00 45.91 2.43
320 326 3.851976 AGAGTGTAGATTCGCTCGTTT 57.148 42.857 0.00 0.00 45.91 3.60
321 327 4.959596 TTAGAGTGTAGATTCGCTCGTT 57.040 40.909 0.00 0.00 45.91 3.85
322 328 4.959596 TTTAGAGTGTAGATTCGCTCGT 57.040 40.909 0.00 0.00 45.91 4.18
323 329 8.508800 AATATTTTAGAGTGTAGATTCGCTCG 57.491 34.615 0.00 0.00 45.91 5.03
361 367 9.444600 GGGAGTATAAACTTTGTCAAATGTAGA 57.555 33.333 0.00 0.00 35.56 2.59
362 368 9.449719 AGGGAGTATAAACTTTGTCAAATGTAG 57.550 33.333 0.00 0.00 35.56 2.74
363 369 9.444600 GAGGGAGTATAAACTTTGTCAAATGTA 57.555 33.333 0.00 0.00 35.56 2.29
364 370 7.393515 GGAGGGAGTATAAACTTTGTCAAATGT 59.606 37.037 0.00 0.00 35.56 2.71
365 371 7.393234 TGGAGGGAGTATAAACTTTGTCAAATG 59.607 37.037 0.00 0.00 35.56 2.32
366 372 7.466804 TGGAGGGAGTATAAACTTTGTCAAAT 58.533 34.615 0.00 0.00 35.56 2.32
367 373 6.843752 TGGAGGGAGTATAAACTTTGTCAAA 58.156 36.000 0.00 0.00 35.56 2.69
368 374 6.442541 TGGAGGGAGTATAAACTTTGTCAA 57.557 37.500 0.00 0.00 35.56 3.18
369 375 6.636454 ATGGAGGGAGTATAAACTTTGTCA 57.364 37.500 0.00 0.00 35.56 3.58
370 376 6.884836 ACAATGGAGGGAGTATAAACTTTGTC 59.115 38.462 0.00 0.00 35.56 3.18
371 377 6.790319 ACAATGGAGGGAGTATAAACTTTGT 58.210 36.000 0.00 0.00 35.56 2.83
372 378 7.703058 AACAATGGAGGGAGTATAAACTTTG 57.297 36.000 0.00 0.00 35.56 2.77
373 379 9.816787 TTTAACAATGGAGGGAGTATAAACTTT 57.183 29.630 0.00 0.00 35.56 2.66
374 380 9.990868 ATTTAACAATGGAGGGAGTATAAACTT 57.009 29.630 0.00 0.00 35.56 2.66
382 388 9.004231 AGACTTATATTTAACAATGGAGGGAGT 57.996 33.333 0.00 0.00 0.00 3.85
383 389 9.853177 AAGACTTATATTTAACAATGGAGGGAG 57.147 33.333 0.00 0.00 0.00 4.30
419 425 5.303333 TGCTTCGTATGTAGTCCATATTGGA 59.697 40.000 0.00 0.00 45.98 3.53
420 426 5.538118 TGCTTCGTATGTAGTCCATATTGG 58.462 41.667 0.00 0.00 38.29 3.16
421 427 7.477144 TTTGCTTCGTATGTAGTCCATATTG 57.523 36.000 0.00 0.00 38.29 1.90
422 428 8.559536 CATTTTGCTTCGTATGTAGTCCATATT 58.440 33.333 0.00 0.00 38.29 1.28
423 429 7.931407 TCATTTTGCTTCGTATGTAGTCCATAT 59.069 33.333 0.00 0.00 38.29 1.78
424 430 7.269316 TCATTTTGCTTCGTATGTAGTCCATA 58.731 34.615 0.00 0.00 34.86 2.74
425 431 6.112734 TCATTTTGCTTCGTATGTAGTCCAT 58.887 36.000 0.00 0.00 37.58 3.41
426 432 5.483811 TCATTTTGCTTCGTATGTAGTCCA 58.516 37.500 0.00 0.00 0.00 4.02
427 433 5.581085 ACTCATTTTGCTTCGTATGTAGTCC 59.419 40.000 0.00 0.00 0.00 3.85
428 434 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
429 435 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
430 436 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
431 437 6.128391 GGTTCACTCATTTTGCTTCGTATGTA 60.128 38.462 0.00 0.00 0.00 2.29
432 438 5.334879 GGTTCACTCATTTTGCTTCGTATGT 60.335 40.000 0.00 0.00 0.00 2.29
433 439 5.088739 GGTTCACTCATTTTGCTTCGTATG 58.911 41.667 0.00 0.00 0.00 2.39
434 440 5.003804 AGGTTCACTCATTTTGCTTCGTAT 58.996 37.500 0.00 0.00 0.00 3.06
435 441 4.385825 AGGTTCACTCATTTTGCTTCGTA 58.614 39.130 0.00 0.00 0.00 3.43
436 442 3.214328 AGGTTCACTCATTTTGCTTCGT 58.786 40.909 0.00 0.00 0.00 3.85
437 443 3.904136 AGGTTCACTCATTTTGCTTCG 57.096 42.857 0.00 0.00 0.00 3.79
438 444 5.239525 AGTGTAGGTTCACTCATTTTGCTTC 59.760 40.000 0.00 0.00 44.07 3.86
439 445 5.133221 AGTGTAGGTTCACTCATTTTGCTT 58.867 37.500 0.00 0.00 44.07 3.91
440 446 4.718961 AGTGTAGGTTCACTCATTTTGCT 58.281 39.130 0.00 0.00 44.07 3.91
508 514 9.985730 TCCGTTTCTAAATACAAGTCTTTTAGA 57.014 29.630 11.29 11.29 39.15 2.10
510 516 9.768662 ACTCCGTTTCTAAATACAAGTCTTTTA 57.231 29.630 0.00 0.00 0.00 1.52
511 517 8.557029 CACTCCGTTTCTAAATACAAGTCTTTT 58.443 33.333 0.00 0.00 0.00 2.27
512 518 7.929785 TCACTCCGTTTCTAAATACAAGTCTTT 59.070 33.333 0.00 0.00 0.00 2.52
513 519 7.439381 TCACTCCGTTTCTAAATACAAGTCTT 58.561 34.615 0.00 0.00 0.00 3.01
514 520 6.989659 TCACTCCGTTTCTAAATACAAGTCT 58.010 36.000 0.00 0.00 0.00 3.24
515 521 6.867293 ACTCACTCCGTTTCTAAATACAAGTC 59.133 38.462 0.00 0.00 0.00 3.01
516 522 6.756221 ACTCACTCCGTTTCTAAATACAAGT 58.244 36.000 0.00 0.00 0.00 3.16
517 523 8.027771 AGTACTCACTCCGTTTCTAAATACAAG 58.972 37.037 0.00 0.00 0.00 3.16
520 526 8.025445 TGAAGTACTCACTCCGTTTCTAAATAC 58.975 37.037 0.00 0.00 32.29 1.89
521 527 8.114331 TGAAGTACTCACTCCGTTTCTAAATA 57.886 34.615 0.00 0.00 32.29 1.40
525 531 5.105877 CCATGAAGTACTCACTCCGTTTCTA 60.106 44.000 0.00 0.00 36.69 2.10
526 532 4.322049 CCATGAAGTACTCACTCCGTTTCT 60.322 45.833 0.00 0.00 36.69 2.52
528 534 3.306780 CCCATGAAGTACTCACTCCGTTT 60.307 47.826 0.00 0.00 36.69 3.60
529 535 2.233922 CCCATGAAGTACTCACTCCGTT 59.766 50.000 0.00 0.00 36.69 4.44
613 619 6.861065 ATACTCACAGTACAAAAACCACTG 57.139 37.500 0.00 0.00 44.20 3.66
614 620 7.051623 TCAATACTCACAGTACAAAAACCACT 58.948 34.615 0.00 0.00 32.84 4.00
615 621 7.254227 TCAATACTCACAGTACAAAAACCAC 57.746 36.000 0.00 0.00 32.84 4.16
616 622 8.458573 AATCAATACTCACAGTACAAAAACCA 57.541 30.769 0.00 0.00 32.84 3.67
617 623 9.744468 AAAATCAATACTCACAGTACAAAAACC 57.256 29.630 0.00 0.00 32.84 3.27
700 706 8.879759 CGCTCCGTTCCACAATATAATTTATAT 58.120 33.333 3.53 3.53 32.90 0.86
701 707 8.089597 TCGCTCCGTTCCACAATATAATTTATA 58.910 33.333 0.00 0.00 0.00 0.98
702 708 6.932400 TCGCTCCGTTCCACAATATAATTTAT 59.068 34.615 0.00 0.00 0.00 1.40
703 709 6.282167 TCGCTCCGTTCCACAATATAATTTA 58.718 36.000 0.00 0.00 0.00 1.40
704 710 5.120399 TCGCTCCGTTCCACAATATAATTT 58.880 37.500 0.00 0.00 0.00 1.82
705 711 4.699637 TCGCTCCGTTCCACAATATAATT 58.300 39.130 0.00 0.00 0.00 1.40
744 750 4.320641 CCGACGCCTCCTTTTGATTAAAAA 60.321 41.667 0.00 0.00 35.50 1.94
745 751 3.189702 CCGACGCCTCCTTTTGATTAAAA 59.810 43.478 0.00 0.00 34.75 1.52
746 752 2.745281 CCGACGCCTCCTTTTGATTAAA 59.255 45.455 0.00 0.00 0.00 1.52
873 885 4.715130 TCTCCTCGGGTGGGGTGG 62.715 72.222 0.00 0.00 0.00 4.61
874 886 1.774894 TTTTCTCCTCGGGTGGGGTG 61.775 60.000 0.00 0.00 0.00 4.61
875 887 1.462627 TTTTCTCCTCGGGTGGGGT 60.463 57.895 0.00 0.00 0.00 4.95
876 888 1.198759 TCTTTTCTCCTCGGGTGGGG 61.199 60.000 0.00 0.00 0.00 4.96
1066 1091 1.155424 TTGGCCTTGACGTTGTCGAC 61.155 55.000 9.11 9.11 40.62 4.20
1151 1184 1.701704 GCCTCAGCAAAATCAAACCG 58.298 50.000 0.00 0.00 39.53 4.44
1167 1200 2.306255 ATTTACCGGACGCATCGCCT 62.306 55.000 9.46 0.00 0.00 5.52
1180 1213 0.167251 CGGCACACCAACGATTTACC 59.833 55.000 0.00 0.00 34.57 2.85
1192 1225 2.109181 GGGATAGGAGCGGCACAC 59.891 66.667 1.45 0.00 0.00 3.82
1225 1270 4.505808 GTCTAAAGAACTAGGGCAGAACC 58.494 47.826 0.00 0.00 37.93 3.62
1240 1285 0.865769 AAACAGCACGCCGTCTAAAG 59.134 50.000 0.00 0.00 0.00 1.85
1247 1292 4.724697 CGCAGAAACAGCACGCCG 62.725 66.667 0.00 0.00 0.00 6.46
1311 1356 1.120530 ACCTGAACACAACTCCGAGT 58.879 50.000 0.00 0.00 0.00 4.18
1312 1357 2.240493 AACCTGAACACAACTCCGAG 57.760 50.000 0.00 0.00 0.00 4.63
1313 1358 2.557317 GAAACCTGAACACAACTCCGA 58.443 47.619 0.00 0.00 0.00 4.55
1314 1359 1.602377 GGAAACCTGAACACAACTCCG 59.398 52.381 0.00 0.00 0.00 4.63
1315 1360 2.932261 AGGAAACCTGAACACAACTCC 58.068 47.619 0.00 0.00 29.57 3.85
1334 1379 0.250467 CCCGATAACATCCCTGCCAG 60.250 60.000 0.00 0.00 0.00 4.85
1344 1389 0.458889 CCGAACTTCGCCCGATAACA 60.459 55.000 5.61 0.00 38.82 2.41
1345 1390 0.179129 TCCGAACTTCGCCCGATAAC 60.179 55.000 5.61 0.00 38.82 1.89
1351 1396 2.761195 GGCAATCCGAACTTCGCCC 61.761 63.158 5.61 0.00 38.82 6.13
1369 1414 1.731700 CATGCTTGCCCTGATTCGG 59.268 57.895 0.00 0.00 0.00 4.30
1389 1434 2.546789 AGAGTTTGCTAAAAACGTCCCG 59.453 45.455 0.00 0.00 35.42 5.14
1480 1529 8.040727 GCATACCAAAAGGGATTTGTTTAATCT 58.959 33.333 0.00 0.00 45.72 2.40
1481 1530 7.821846 TGCATACCAAAAGGGATTTGTTTAATC 59.178 33.333 0.84 0.00 45.72 1.75
1486 1535 5.559148 TTGCATACCAAAAGGGATTTGTT 57.441 34.783 0.00 0.00 45.72 2.83
1538 1587 3.983741 ACAACTACAGTCTCAGCTTCAC 58.016 45.455 0.00 0.00 0.00 3.18
1544 1593 8.516234 AGACTTTGTATACAACTACAGTCTCAG 58.484 37.037 28.93 18.50 42.22 3.35
1567 1628 7.272978 ACCCACTATACAACACAATGATAGAC 58.727 38.462 0.00 0.00 0.00 2.59
1630 1691 4.644234 TCCATGTGTCACAACAAAGAATGT 59.356 37.500 10.28 0.00 46.82 2.71
1634 1695 6.475504 AGATATCCATGTGTCACAACAAAGA 58.524 36.000 10.28 3.28 37.08 2.52
1688 1749 9.837681 TCTTGGATATATTCTACCCTATCACAA 57.162 33.333 0.00 0.00 0.00 3.33
1697 1758 8.870075 AAAGGCATTCTTGGATATATTCTACC 57.130 34.615 0.00 0.00 35.55 3.18
1750 1811 2.499197 TGAAACGCATAAAGGCAGTGA 58.501 42.857 0.00 0.00 0.00 3.41
1751 1812 2.987413 TGAAACGCATAAAGGCAGTG 57.013 45.000 0.00 0.00 0.00 3.66
1752 1813 3.758554 AGAATGAAACGCATAAAGGCAGT 59.241 39.130 0.00 0.00 35.78 4.40
1753 1814 4.361451 AGAATGAAACGCATAAAGGCAG 57.639 40.909 0.00 0.00 35.78 4.85
1754 1815 4.022416 ACAAGAATGAAACGCATAAAGGCA 60.022 37.500 0.00 0.00 35.78 4.75
1755 1816 4.485163 ACAAGAATGAAACGCATAAAGGC 58.515 39.130 0.00 0.00 35.78 4.35
1757 1818 7.481798 GGAACTACAAGAATGAAACGCATAAAG 59.518 37.037 0.00 0.00 35.78 1.85
1785 1846 9.241919 TGGATGTGTGATTTGTAACAGATTAAT 57.758 29.630 0.00 0.00 0.00 1.40
1786 1847 8.628630 TGGATGTGTGATTTGTAACAGATTAA 57.371 30.769 0.00 0.00 0.00 1.40
1787 1848 8.806429 ATGGATGTGTGATTTGTAACAGATTA 57.194 30.769 0.00 0.00 0.00 1.75
1788 1849 7.148018 GGATGGATGTGTGATTTGTAACAGATT 60.148 37.037 0.00 0.00 0.00 2.40
1789 1850 6.319658 GGATGGATGTGTGATTTGTAACAGAT 59.680 38.462 0.00 0.00 0.00 2.90
1790 1851 5.647658 GGATGGATGTGTGATTTGTAACAGA 59.352 40.000 0.00 0.00 0.00 3.41
1791 1852 5.649395 AGGATGGATGTGTGATTTGTAACAG 59.351 40.000 0.00 0.00 0.00 3.16
1792 1853 5.569355 AGGATGGATGTGTGATTTGTAACA 58.431 37.500 0.00 0.00 0.00 2.41
1793 1854 6.515272 AAGGATGGATGTGTGATTTGTAAC 57.485 37.500 0.00 0.00 0.00 2.50
1794 1855 8.685427 CATAAAGGATGGATGTGTGATTTGTAA 58.315 33.333 0.00 0.00 31.20 2.41
1795 1856 7.201812 GCATAAAGGATGGATGTGTGATTTGTA 60.202 37.037 0.00 0.00 35.91 2.41
1796 1857 6.406177 GCATAAAGGATGGATGTGTGATTTGT 60.406 38.462 0.00 0.00 35.91 2.83
1797 1858 5.981315 GCATAAAGGATGGATGTGTGATTTG 59.019 40.000 0.00 0.00 35.91 2.32
1798 1859 5.895534 AGCATAAAGGATGGATGTGTGATTT 59.104 36.000 0.00 0.00 35.91 2.17
1799 1860 5.452255 AGCATAAAGGATGGATGTGTGATT 58.548 37.500 0.00 0.00 35.91 2.57
1800 1861 5.057843 AGCATAAAGGATGGATGTGTGAT 57.942 39.130 0.00 0.00 35.91 3.06
1801 1862 4.508551 AGCATAAAGGATGGATGTGTGA 57.491 40.909 0.00 0.00 35.91 3.58
1802 1863 5.587388 AAAGCATAAAGGATGGATGTGTG 57.413 39.130 0.00 0.00 35.91 3.82
1803 1864 5.716228 TGAAAAGCATAAAGGATGGATGTGT 59.284 36.000 0.00 0.00 35.91 3.72
1804 1865 6.038356 GTGAAAAGCATAAAGGATGGATGTG 58.962 40.000 0.00 0.00 35.91 3.21
1805 1866 5.954150 AGTGAAAAGCATAAAGGATGGATGT 59.046 36.000 0.00 0.00 35.91 3.06
1806 1867 6.127535 ACAGTGAAAAGCATAAAGGATGGATG 60.128 38.462 0.00 0.00 35.91 3.51
1807 1868 5.954150 ACAGTGAAAAGCATAAAGGATGGAT 59.046 36.000 0.00 0.00 35.91 3.41
1808 1869 5.324409 ACAGTGAAAAGCATAAAGGATGGA 58.676 37.500 0.00 0.00 35.91 3.41
1809 1870 5.649782 ACAGTGAAAAGCATAAAGGATGG 57.350 39.130 0.00 0.00 35.91 3.51
1810 1871 6.449698 ACAACAGTGAAAAGCATAAAGGATG 58.550 36.000 0.00 0.00 38.73 3.51
1811 1872 6.655078 ACAACAGTGAAAAGCATAAAGGAT 57.345 33.333 0.00 0.00 0.00 3.24
1812 1873 7.759489 ATACAACAGTGAAAAGCATAAAGGA 57.241 32.000 0.00 0.00 0.00 3.36
1818 1879 9.195411 CAACAATTATACAACAGTGAAAAGCAT 57.805 29.630 0.00 0.00 0.00 3.79
1819 1880 8.194104 ACAACAATTATACAACAGTGAAAAGCA 58.806 29.630 0.00 0.00 0.00 3.91
1820 1881 8.574196 ACAACAATTATACAACAGTGAAAAGC 57.426 30.769 0.00 0.00 0.00 3.51
1824 1885 9.549078 TCACTACAACAATTATACAACAGTGAA 57.451 29.630 0.00 0.00 36.63 3.18
1825 1886 9.549078 TTCACTACAACAATTATACAACAGTGA 57.451 29.630 0.00 0.00 37.49 3.41
1826 1887 9.811655 CTTCACTACAACAATTATACAACAGTG 57.188 33.333 0.00 0.00 0.00 3.66
1827 1888 8.999431 CCTTCACTACAACAATTATACAACAGT 58.001 33.333 0.00 0.00 0.00 3.55
1828 1889 8.999431 ACCTTCACTACAACAATTATACAACAG 58.001 33.333 0.00 0.00 0.00 3.16
1829 1890 8.911918 ACCTTCACTACAACAATTATACAACA 57.088 30.769 0.00 0.00 0.00 3.33
1831 1892 9.439500 GGTACCTTCACTACAACAATTATACAA 57.561 33.333 4.06 0.00 0.00 2.41
1832 1893 8.818860 AGGTACCTTCACTACAACAATTATACA 58.181 33.333 9.21 0.00 0.00 2.29
1835 1896 9.832445 CATAGGTACCTTCACTACAACAATTAT 57.168 33.333 22.11 0.00 0.00 1.28
1836 1897 7.767198 GCATAGGTACCTTCACTACAACAATTA 59.233 37.037 22.11 0.00 0.00 1.40
1837 1898 6.598064 GCATAGGTACCTTCACTACAACAATT 59.402 38.462 22.11 0.00 0.00 2.32
1838 1899 6.070194 AGCATAGGTACCTTCACTACAACAAT 60.070 38.462 22.11 0.00 0.00 2.71
1839 1900 5.247564 AGCATAGGTACCTTCACTACAACAA 59.752 40.000 22.11 0.00 0.00 2.83
1840 1901 4.775780 AGCATAGGTACCTTCACTACAACA 59.224 41.667 22.11 0.00 0.00 3.33
1841 1902 5.127356 AGAGCATAGGTACCTTCACTACAAC 59.873 44.000 22.11 3.29 0.00 3.32
1842 1903 5.269991 AGAGCATAGGTACCTTCACTACAA 58.730 41.667 22.11 0.00 0.00 2.41
1843 1904 4.868268 AGAGCATAGGTACCTTCACTACA 58.132 43.478 22.11 0.00 0.00 2.74
1844 1905 5.855740 AAGAGCATAGGTACCTTCACTAC 57.144 43.478 22.11 8.04 0.00 2.73
1845 1906 6.869206 AAAAGAGCATAGGTACCTTCACTA 57.131 37.500 22.11 0.75 0.00 2.74
1846 1907 5.763876 AAAAGAGCATAGGTACCTTCACT 57.236 39.130 22.11 14.57 0.00 3.41
1847 1908 5.938125 TGAAAAAGAGCATAGGTACCTTCAC 59.062 40.000 22.11 9.66 0.00 3.18
1848 1909 6.121776 TGAAAAAGAGCATAGGTACCTTCA 57.878 37.500 22.11 10.60 0.00 3.02
1849 1910 7.448748 TTTGAAAAAGAGCATAGGTACCTTC 57.551 36.000 22.11 11.67 0.00 3.46
1850 1911 7.669722 TGATTTGAAAAAGAGCATAGGTACCTT 59.330 33.333 22.11 0.40 0.00 3.50
1851 1912 7.121315 GTGATTTGAAAAAGAGCATAGGTACCT 59.879 37.037 20.57 20.57 0.00 3.08
1852 1913 7.251281 GTGATTTGAAAAAGAGCATAGGTACC 58.749 38.462 2.73 2.73 0.00 3.34
1853 1914 6.961554 CGTGATTTGAAAAAGAGCATAGGTAC 59.038 38.462 0.00 0.00 0.00 3.34
1862 1923 4.797471 TGGATGCGTGATTTGAAAAAGAG 58.203 39.130 0.00 0.00 0.00 2.85
1866 1927 5.389859 AGAATGGATGCGTGATTTGAAAA 57.610 34.783 0.00 0.00 0.00 2.29
1878 1939 3.002042 CAGACATGACGAAGAATGGATGC 59.998 47.826 0.00 0.00 31.45 3.91
1883 1944 3.989817 TGTGACAGACATGACGAAGAATG 59.010 43.478 0.00 0.00 0.00 2.67
1902 1990 2.941064 CTGGATTATGGTCACAGCTGTG 59.059 50.000 36.07 36.07 46.91 3.66
1905 1993 4.574674 TTTCTGGATTATGGTCACAGCT 57.425 40.909 0.00 0.00 0.00 4.24
1906 1994 5.841957 ATTTTCTGGATTATGGTCACAGC 57.158 39.130 0.00 0.00 0.00 4.40
1907 1995 9.956720 GAATTATTTTCTGGATTATGGTCACAG 57.043 33.333 0.00 0.00 0.00 3.66
1913 2001 8.636213 AGTGCAGAATTATTTTCTGGATTATGG 58.364 33.333 15.07 0.00 45.97 2.74
1915 2003 8.139989 GCAGTGCAGAATTATTTTCTGGATTAT 58.860 33.333 11.09 3.08 45.97 1.28
1916 2004 7.483307 GCAGTGCAGAATTATTTTCTGGATTA 58.517 34.615 11.09 0.00 45.97 1.75
1928 2016 3.609175 GCAAAGTTCGCAGTGCAGAATTA 60.609 43.478 16.83 0.00 36.97 1.40
1929 2017 2.859806 GCAAAGTTCGCAGTGCAGAATT 60.860 45.455 16.83 12.88 36.97 2.17
1930 2018 1.335324 GCAAAGTTCGCAGTGCAGAAT 60.335 47.619 16.83 0.00 36.97 2.40
1932 2020 0.815213 AGCAAAGTTCGCAGTGCAGA 60.815 50.000 16.83 10.61 39.50 4.26
1933 2021 0.029834 AAGCAAAGTTCGCAGTGCAG 59.970 50.000 16.83 8.26 39.50 4.41
1934 2022 0.455410 AAAGCAAAGTTCGCAGTGCA 59.545 45.000 16.83 0.00 39.50 4.57
1935 2023 1.123655 GAAAGCAAAGTTCGCAGTGC 58.876 50.000 4.58 4.58 37.26 4.40
1936 2024 2.763249 AGAAAGCAAAGTTCGCAGTG 57.237 45.000 0.00 0.00 0.00 3.66
1937 2025 2.682856 TGAAGAAAGCAAAGTTCGCAGT 59.317 40.909 0.00 0.00 0.00 4.40
1938 2026 3.038710 GTGAAGAAAGCAAAGTTCGCAG 58.961 45.455 0.00 0.00 31.20 5.18
1939 2027 2.682856 AGTGAAGAAAGCAAAGTTCGCA 59.317 40.909 0.00 0.00 32.89 5.10
1940 2028 3.340337 AGTGAAGAAAGCAAAGTTCGC 57.660 42.857 0.00 0.00 0.00 4.70
1941 2029 4.037690 CCAAGTGAAGAAAGCAAAGTTCG 58.962 43.478 0.00 0.00 0.00 3.95
1942 2030 3.798878 GCCAAGTGAAGAAAGCAAAGTTC 59.201 43.478 0.00 0.00 0.00 3.01
1943 2031 3.195396 TGCCAAGTGAAGAAAGCAAAGTT 59.805 39.130 0.00 0.00 0.00 2.66
1944 2032 2.760092 TGCCAAGTGAAGAAAGCAAAGT 59.240 40.909 0.00 0.00 0.00 2.66
1945 2033 3.441496 TGCCAAGTGAAGAAAGCAAAG 57.559 42.857 0.00 0.00 0.00 2.77
1946 2034 4.121317 CAATGCCAAGTGAAGAAAGCAAA 58.879 39.130 0.00 0.00 33.35 3.68
1947 2035 3.132646 ACAATGCCAAGTGAAGAAAGCAA 59.867 39.130 0.00 0.00 33.35 3.91
1948 2036 2.694628 ACAATGCCAAGTGAAGAAAGCA 59.305 40.909 0.00 0.00 34.28 3.91
1949 2037 3.375782 ACAATGCCAAGTGAAGAAAGC 57.624 42.857 0.00 0.00 0.00 3.51
1950 2038 6.258230 TGATACAATGCCAAGTGAAGAAAG 57.742 37.500 0.00 0.00 0.00 2.62
1951 2039 6.489700 TCTTGATACAATGCCAAGTGAAGAAA 59.510 34.615 0.00 0.00 38.61 2.52
1952 2040 6.003326 TCTTGATACAATGCCAAGTGAAGAA 58.997 36.000 0.00 0.00 38.61 2.52
1953 2041 5.559770 TCTTGATACAATGCCAAGTGAAGA 58.440 37.500 0.00 0.00 38.61 2.87
1954 2042 5.885230 TCTTGATACAATGCCAAGTGAAG 57.115 39.130 0.00 0.00 38.61 3.02
1955 2043 6.038603 GCTATCTTGATACAATGCCAAGTGAA 59.961 38.462 0.00 0.00 38.61 3.18
1956 2044 5.528690 GCTATCTTGATACAATGCCAAGTGA 59.471 40.000 0.00 0.00 38.61 3.41
1957 2045 5.530171 AGCTATCTTGATACAATGCCAAGTG 59.470 40.000 0.00 0.00 38.61 3.16
1958 2046 5.688807 AGCTATCTTGATACAATGCCAAGT 58.311 37.500 0.00 0.00 38.61 3.16
1959 2047 6.933521 AGTAGCTATCTTGATACAATGCCAAG 59.066 38.462 0.00 0.00 38.79 3.61
1960 2048 6.707608 CAGTAGCTATCTTGATACAATGCCAA 59.292 38.462 0.00 0.00 31.92 4.52
1961 2049 6.226052 CAGTAGCTATCTTGATACAATGCCA 58.774 40.000 0.00 0.00 31.92 4.92
1962 2050 5.121454 GCAGTAGCTATCTTGATACAATGCC 59.879 44.000 0.00 0.00 37.91 4.40
1963 2051 5.698089 TGCAGTAGCTATCTTGATACAATGC 59.302 40.000 0.00 0.00 42.74 3.56
1964 2052 7.902387 ATGCAGTAGCTATCTTGATACAATG 57.098 36.000 0.00 0.00 42.74 2.82
1965 2053 7.389884 CCAATGCAGTAGCTATCTTGATACAAT 59.610 37.037 0.00 0.00 42.74 2.71
1966 2054 6.707608 CCAATGCAGTAGCTATCTTGATACAA 59.292 38.462 0.00 0.00 42.74 2.41
1967 2055 6.183361 ACCAATGCAGTAGCTATCTTGATACA 60.183 38.462 0.00 0.00 42.74 2.29
1968 2056 6.226787 ACCAATGCAGTAGCTATCTTGATAC 58.773 40.000 0.00 0.00 42.74 2.24
1969 2057 6.041979 TGACCAATGCAGTAGCTATCTTGATA 59.958 38.462 0.00 0.00 42.74 2.15
1970 2058 5.163269 TGACCAATGCAGTAGCTATCTTGAT 60.163 40.000 0.00 0.00 42.74 2.57
1971 2059 4.162131 TGACCAATGCAGTAGCTATCTTGA 59.838 41.667 0.00 0.00 42.74 3.02
1972 2060 4.445453 TGACCAATGCAGTAGCTATCTTG 58.555 43.478 0.00 0.00 42.74 3.02
1973 2061 4.760530 TGACCAATGCAGTAGCTATCTT 57.239 40.909 0.00 0.00 42.74 2.40
1974 2062 4.163078 ACTTGACCAATGCAGTAGCTATCT 59.837 41.667 0.00 0.00 42.74 1.98
1975 2063 4.272018 CACTTGACCAATGCAGTAGCTATC 59.728 45.833 0.00 0.00 42.74 2.08
1978 2066 2.430465 CACTTGACCAATGCAGTAGCT 58.570 47.619 0.00 0.00 42.74 3.32
1981 2069 1.202867 TGCCACTTGACCAATGCAGTA 60.203 47.619 0.00 0.00 0.00 2.74
1983 2071 0.242825 CTGCCACTTGACCAATGCAG 59.757 55.000 11.73 11.73 40.05 4.41
1993 2081 3.931578 GTAGGATATAGCCTGCCACTTG 58.068 50.000 19.99 0.00 39.08 3.16
2007 2095 3.197766 CCACAAGTGCTTGAGGTAGGATA 59.802 47.826 17.62 0.00 43.39 2.59
2008 2096 2.026822 CCACAAGTGCTTGAGGTAGGAT 60.027 50.000 17.62 0.00 43.39 3.24
2009 2097 1.347707 CCACAAGTGCTTGAGGTAGGA 59.652 52.381 17.62 0.00 43.39 2.94
2015 2103 2.945008 TGAGTTTCCACAAGTGCTTGAG 59.055 45.455 17.62 10.15 42.93 3.02
2023 2111 4.749245 AAATAGCGTGAGTTTCCACAAG 57.251 40.909 0.00 0.00 36.89 3.16
2024 2112 4.336993 ACAAAATAGCGTGAGTTTCCACAA 59.663 37.500 0.00 0.00 36.89 3.33
2025 2113 3.880490 ACAAAATAGCGTGAGTTTCCACA 59.120 39.130 0.00 0.00 36.89 4.17
2197 2292 5.105392 AGTGAGAGTCTTGACCTTGATCATC 60.105 44.000 0.00 0.00 0.00 2.92
2266 2361 1.448540 AACGCGCTCCTTGATCCTG 60.449 57.895 5.73 0.00 0.00 3.86
2324 2419 9.959721 AAAGAAGAGTAATATCAGGCTTTGTTA 57.040 29.630 0.00 0.00 0.00 2.41
2325 2420 8.870075 AAAGAAGAGTAATATCAGGCTTTGTT 57.130 30.769 0.00 0.00 0.00 2.83
2329 2424 7.113658 TCGAAAGAAGAGTAATATCAGGCTT 57.886 36.000 0.00 0.00 37.03 4.35
2381 2499 5.815233 TGAGGAACAGAGAGAGTTCATTT 57.185 39.130 8.15 0.00 45.45 2.32
2403 2525 1.202604 CCCCGCCGTTGTTACAGATAT 60.203 52.381 0.00 0.00 0.00 1.63
2416 2538 3.242897 TACAAAGTGTCCCCCGCCG 62.243 63.158 0.00 0.00 0.00 6.46
2437 2560 4.042187 GTCTGGGCCATCCAAATACTAGAT 59.958 45.833 6.72 0.00 46.51 1.98
2443 2566 3.433031 CGTTAGTCTGGGCCATCCAAATA 60.433 47.826 6.72 0.00 46.51 1.40
2466 2589 5.289434 GCCTGCAAGCAGAAAATAATTACAC 59.711 40.000 22.76 0.00 46.30 2.90
2616 2743 1.622811 CACTTCTCTCAGGAGGCAAGT 59.377 52.381 7.55 7.55 37.21 3.16
2752 2879 0.651031 GAGGCGGATAAAGTTGCGAC 59.349 55.000 0.00 0.00 38.98 5.19
2759 2886 5.542779 AGCTAATAACAGAGGCGGATAAAG 58.457 41.667 0.00 0.00 0.00 1.85
2810 2937 4.150451 GGCGAAACACAATCAAAATTCAGG 59.850 41.667 0.00 0.00 0.00 3.86
2821 2948 2.293399 GGAAAGAGTGGCGAAACACAAT 59.707 45.455 7.83 0.00 43.72 2.71
2832 2961 6.039717 TCAAACTTGAATTCAGGAAAGAGTGG 59.960 38.462 23.00 11.41 33.55 4.00
2853 2982 4.854173 TCTGCATTTAGCCCTACATCAAA 58.146 39.130 0.00 0.00 44.83 2.69
2859 2996 5.590259 TCAATCTTTCTGCATTTAGCCCTAC 59.410 40.000 0.00 0.00 44.83 3.18
2894 3032 8.995027 AACCAGCCTCACATGAATATAATTTA 57.005 30.769 0.00 0.00 0.00 1.40
2895 3033 7.255242 CGAACCAGCCTCACATGAATATAATTT 60.255 37.037 0.00 0.00 0.00 1.82
2897 3035 5.702670 CGAACCAGCCTCACATGAATATAAT 59.297 40.000 0.00 0.00 0.00 1.28
2898 3036 5.056480 CGAACCAGCCTCACATGAATATAA 58.944 41.667 0.00 0.00 0.00 0.98
2899 3037 4.631131 CGAACCAGCCTCACATGAATATA 58.369 43.478 0.00 0.00 0.00 0.86
2943 3081 2.223829 ACACTCGTTCTTGTGTCCAGAG 60.224 50.000 0.00 0.00 42.95 3.35
2966 3372 6.443792 AGAAAAAGTTAAAAGGGTATGTGCG 58.556 36.000 0.00 0.00 0.00 5.34
2967 3373 7.923878 TGAAGAAAAAGTTAAAAGGGTATGTGC 59.076 33.333 0.00 0.00 0.00 4.57
3036 3443 7.012704 CCGTAGCTTACCAGTGTATCTTAACTA 59.987 40.741 0.00 0.00 0.00 2.24
3067 3474 7.013750 TGCTCTCTGTATGGTTATCTAAGTCAG 59.986 40.741 0.00 0.00 0.00 3.51
3121 3531 9.300681 TCTGGTCAATGAAGAGAAAATATGTTT 57.699 29.630 0.00 0.00 0.00 2.83
3122 3532 8.868522 TCTGGTCAATGAAGAGAAAATATGTT 57.131 30.769 0.00 0.00 0.00 2.71
3239 3649 1.909986 GGGGCTCTTCTTACTCCTTGT 59.090 52.381 0.00 0.00 0.00 3.16
3240 3650 2.192263 AGGGGCTCTTCTTACTCCTTG 58.808 52.381 0.00 0.00 0.00 3.61
3241 3651 2.651642 AGGGGCTCTTCTTACTCCTT 57.348 50.000 0.00 0.00 0.00 3.36
3403 3813 3.648009 GAGGAGGATATTCGACAAGCTG 58.352 50.000 0.00 0.00 0.00 4.24
3451 3861 2.262423 ACAGCTTCAAGGACCAACTC 57.738 50.000 0.00 0.00 0.00 3.01
3472 3882 3.318839 TCAAAGATCAAGTTGTTGGCAGG 59.681 43.478 2.11 0.00 34.09 4.85
3484 3894 4.261741 GGCAGAAACAGCTTCAAAGATCAA 60.262 41.667 0.00 0.00 36.40 2.57
3487 3897 3.225104 TGGCAGAAACAGCTTCAAAGAT 58.775 40.909 0.00 0.00 36.40 2.40
3490 3900 2.495270 TGTTGGCAGAAACAGCTTCAAA 59.505 40.909 0.00 0.00 35.16 2.69
3530 3940 1.970352 GAGCTCAGGGGAGGCAGAAG 61.970 65.000 9.40 0.00 41.67 2.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.