Multiple sequence alignment - TraesCS5A01G223800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)



BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G223800 chr5A 100.000 7123 0 0 1 7123 439545043 439552165 0.000000e+00 13154.0
1 TraesCS5A01G223800 chr5B 92.321 4076 206 40 2428 6445 397830024 397834050 0.000000e+00 5694.0
2 TraesCS5A01G223800 chr5B 85.645 2466 155 82 23 2406 397827684 397830032 0.000000e+00 2409.0
3 TraesCS5A01G223800 chr5B 92.635 611 42 3 3078 3685 566408095 566407485 0.000000e+00 876.0
4 TraesCS5A01G223800 chr5B 89.571 652 37 17 6498 7123 397834340 397834986 0.000000e+00 798.0
5 TraesCS5A01G223800 chr5D 93.988 3393 150 23 3041 6423 338652972 338656320 0.000000e+00 5086.0
6 TraesCS5A01G223800 chr5D 83.161 2411 147 87 76 2406 338650009 338652240 0.000000e+00 1964.0
7 TraesCS5A01G223800 chr5D 87.660 705 29 26 6440 7123 338656455 338657122 0.000000e+00 767.0
8 TraesCS5A01G223800 chr5D 88.571 385 30 7 2640 3015 338652533 338652912 8.420000e-124 455.0
9 TraesCS5A01G223800 chr5D 89.862 217 2 3 2428 2642 338652232 338652430 1.970000e-65 261.0
10 TraesCS5A01G223800 chr5D 92.683 82 1 3 3 83 338649910 338649987 5.840000e-21 113.0
11 TraesCS5A01G223800 chr2B 92.707 617 42 3 3072 3685 247552085 247552701 0.000000e+00 887.0
12 TraesCS5A01G223800 chr2B 92.244 606 44 3 3078 3680 281533461 281532856 0.000000e+00 856.0
13 TraesCS5A01G223800 chr2B 90.762 617 54 3 3072 3685 269879445 269880061 0.000000e+00 821.0
14 TraesCS5A01G223800 chr3B 92.308 611 44 3 3078 3685 738243286 738243896 0.000000e+00 865.0
15 TraesCS5A01G223800 chr4A 92.144 611 44 4 3078 3685 552227390 552226781 0.000000e+00 859.0
16 TraesCS5A01G223800 chr2A 91.896 617 47 3 3072 3685 591090982 591091598 0.000000e+00 859.0
17 TraesCS5A01G223800 chr6B 91.980 611 46 3 3072 3679 154308773 154309383 0.000000e+00 854.0
18 TraesCS5A01G223800 chr6B 86.559 186 8 6 2515 2691 178026831 178026654 9.430000e-44 189.0
19 TraesCS5A01G223800 chr6B 89.231 130 5 3 2515 2635 559484698 559484827 3.440000e-33 154.0
20 TraesCS5A01G223800 chr6B 80.473 169 25 6 2865 3025 178023988 178023820 9.700000e-24 122.0
21 TraesCS5A01G223800 chr1D 80.952 105 20 0 6791 6895 291842220 291842116 4.580000e-12 84.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G223800 chr5A 439545043 439552165 7122 False 13154 13154 100.000000 1 7123 1 chr5A.!!$F1 7122
1 TraesCS5A01G223800 chr5B 397827684 397834986 7302 False 2967 5694 89.179000 23 7123 3 chr5B.!!$F1 7100
2 TraesCS5A01G223800 chr5B 566407485 566408095 610 True 876 876 92.635000 3078 3685 1 chr5B.!!$R1 607
3 TraesCS5A01G223800 chr5D 338649910 338657122 7212 False 1441 5086 89.320833 3 7123 6 chr5D.!!$F1 7120
4 TraesCS5A01G223800 chr2B 247552085 247552701 616 False 887 887 92.707000 3072 3685 1 chr2B.!!$F1 613
5 TraesCS5A01G223800 chr2B 281532856 281533461 605 True 856 856 92.244000 3078 3680 1 chr2B.!!$R1 602
6 TraesCS5A01G223800 chr2B 269879445 269880061 616 False 821 821 90.762000 3072 3685 1 chr2B.!!$F2 613
7 TraesCS5A01G223800 chr3B 738243286 738243896 610 False 865 865 92.308000 3078 3685 1 chr3B.!!$F1 607
8 TraesCS5A01G223800 chr4A 552226781 552227390 609 True 859 859 92.144000 3078 3685 1 chr4A.!!$R1 607
9 TraesCS5A01G223800 chr2A 591090982 591091598 616 False 859 859 91.896000 3072 3685 1 chr2A.!!$F1 613
10 TraesCS5A01G223800 chr6B 154308773 154309383 610 False 854 854 91.980000 3072 3679 1 chr6B.!!$F1 607


AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
468 547 0.108585 AGGCTAGAGAGAGCGAGAGG 59.891 60.0 0.00 0.00 43.83 3.69 F
1080 1190 0.037232 GGTCAGTCACCCTCTTTCCG 60.037 60.0 0.00 0.00 39.69 4.30 F
1368 1495 0.095935 CGGTGAGATTCTTGCAAGCG 59.904 55.0 21.99 12.48 0.00 4.68 F
1774 1928 0.101579 GTGGCTCTCTACGCTTCTCC 59.898 60.0 0.00 0.00 0.00 3.71 F
2673 2973 0.179048 TGATTAGTGGCCAGCCGATG 60.179 55.0 5.11 0.00 39.42 3.84 F
3037 3369 0.462937 TATGCGTGATTTCGGGGGTG 60.463 55.0 0.00 0.00 0.00 4.61 F
4588 4943 0.467290 TTGAGCCGGCAGGAAAAACT 60.467 50.0 31.54 3.33 41.02 2.66 F
4837 5192 0.382158 TGCCGTCAGATAAGAGCTCG 59.618 55.0 8.37 0.00 0.00 5.03 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1336 1457 0.108615 CTCACCGGGAGCACTAACAG 60.109 60.000 6.32 0.00 36.69 3.16 R
2495 2685 0.031721 GCTCTGCTTTGTGCTGCTTT 59.968 50.000 0.00 0.00 43.37 3.51 R
2910 3210 0.101759 AACATATCGACCGTCACCCG 59.898 55.000 0.00 0.00 0.00 5.28 R
3392 3738 0.796312 CCCCGACAGTTGAACATTCG 59.204 55.000 10.51 10.51 0.00 3.34 R
4588 4943 0.252103 AGTCCTTGGGAGCTACCGAA 60.252 55.000 11.35 5.07 40.11 4.30 R
4657 5012 5.139727 CCCTTGGATTTGATAGCAACCATA 58.860 41.667 4.11 0.00 32.25 2.74 R
5897 6255 0.106519 AGCTGTTCCTGCCAACAACT 60.107 50.000 0.00 0.00 35.83 3.16 R
6715 7362 0.314935 GCATGGAACCTGTGTTGGTG 59.685 55.000 0.00 0.00 40.73 4.17 R


All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
95 99 2.047844 CTCTCCACCACACAGGCG 60.048 66.667 0.00 0.00 43.14 5.52
222 257 0.605589 GTAAAGTTCTGCCGCACCCT 60.606 55.000 0.00 0.00 0.00 4.34
224 259 3.883744 AAGTTCTGCCGCACCCTCG 62.884 63.158 0.00 0.00 0.00 4.63
262 297 1.739371 CGGATAATTAGCCCGGCTAGC 60.739 57.143 18.59 6.04 42.34 3.42
274 309 0.605589 CGGCTAGCTAATCCTGGGAG 59.394 60.000 15.72 0.00 0.00 4.30
275 310 0.323302 GGCTAGCTAATCCTGGGAGC 59.677 60.000 15.72 7.75 36.42 4.70
277 312 1.627834 GCTAGCTAATCCTGGGAGCAT 59.372 52.381 7.70 6.30 38.73 3.79
282 317 6.183361 GCTAGCTAATCCTGGGAGCATATTAT 60.183 42.308 7.70 0.87 38.73 1.28
285 320 6.673978 AGCTAATCCTGGGAGCATATTATACA 59.326 38.462 15.39 0.00 38.73 2.29
307 342 6.981722 ACAATCAAACAGTGGAAGAAATACC 58.018 36.000 0.00 0.00 0.00 2.73
377 449 4.411981 AGCAGCAGCAGCAGGAGG 62.412 66.667 12.92 0.00 45.49 4.30
379 451 2.125065 CAGCAGCAGCAGGAGGAG 60.125 66.667 3.17 0.00 45.49 3.69
380 452 4.098722 AGCAGCAGCAGGAGGAGC 62.099 66.667 3.17 0.00 45.49 4.70
381 453 4.405671 GCAGCAGCAGGAGGAGCA 62.406 66.667 0.00 0.00 41.58 4.26
382 454 2.125065 CAGCAGCAGGAGGAGCAG 60.125 66.667 0.00 0.00 0.00 4.24
383 455 4.098722 AGCAGCAGGAGGAGCAGC 62.099 66.667 0.00 0.00 43.76 5.25
407 479 4.678622 GGGGGCGAGTTTTTAACATATTG 58.321 43.478 0.00 0.00 0.00 1.90
408 480 4.109766 GGGGCGAGTTTTTAACATATTGC 58.890 43.478 0.00 0.00 0.00 3.56
416 495 5.567534 AGTTTTTAACATATTGCGCGTTGAG 59.432 36.000 8.43 0.00 0.00 3.02
430 509 1.461127 CGTTGAGGCGAAGGAAAAGAG 59.539 52.381 0.00 0.00 0.00 2.85
462 541 3.031013 AGAGGAAAAGGCTAGAGAGAGC 58.969 50.000 0.00 0.00 42.05 4.09
468 547 0.108585 AGGCTAGAGAGAGCGAGAGG 59.891 60.000 0.00 0.00 43.83 3.69
486 568 2.295909 GAGGGAGATACTGCTGCTACTG 59.704 54.545 0.00 0.00 0.00 2.74
495 577 2.510238 CTGCTACTGCGTCCTGCC 60.510 66.667 0.00 0.00 45.60 4.85
496 578 4.082523 TGCTACTGCGTCCTGCCC 62.083 66.667 0.00 0.00 45.60 5.36
497 579 4.082523 GCTACTGCGTCCTGCCCA 62.083 66.667 0.00 0.00 45.60 5.36
498 580 2.125512 CTACTGCGTCCTGCCCAC 60.126 66.667 0.00 0.00 45.60 4.61
499 581 2.920384 TACTGCGTCCTGCCCACA 60.920 61.111 0.00 0.00 45.60 4.17
515 597 1.817941 ACACCACACCACGTTGAGC 60.818 57.895 0.00 0.00 0.00 4.26
533 619 1.429021 CCATTGACATTGCGACGGG 59.571 57.895 0.00 0.00 0.00 5.28
534 620 1.226379 CATTGACATTGCGACGGGC 60.226 57.895 0.00 0.00 43.96 6.13
587 677 4.869440 CGGAGAGCAGGCAGAGCG 62.869 72.222 0.00 0.00 37.01 5.03
589 679 4.447989 GAGAGCAGGCAGAGCGCA 62.448 66.667 11.47 0.00 45.17 6.09
590 680 4.454319 AGAGCAGGCAGAGCGCAG 62.454 66.667 11.47 0.00 45.17 5.18
629 722 5.567025 GCCGAGGAGGAGTTAATAATACCAG 60.567 48.000 0.00 0.00 45.00 4.00
647 740 2.362889 CACCACCCCTTCCATGGC 60.363 66.667 6.96 0.00 36.96 4.40
686 779 3.125376 ATCATTGCCGCCTCCTCCC 62.125 63.158 0.00 0.00 0.00 4.30
708 801 1.366319 CCTCCCTCCATATCCCCTTG 58.634 60.000 0.00 0.00 0.00 3.61
730 823 0.168788 TAATTGCTGCTGCTGCGTTC 59.831 50.000 23.38 3.14 43.34 3.95
758 851 1.832167 CCACACCAACCCAACCCAG 60.832 63.158 0.00 0.00 0.00 4.45
773 866 4.140599 CAGCCGCGCCTCTCTCTT 62.141 66.667 0.00 0.00 0.00 2.85
774 867 4.140599 AGCCGCGCCTCTCTCTTG 62.141 66.667 0.00 0.00 0.00 3.02
776 869 4.140599 CCGCGCCTCTCTCTTGCT 62.141 66.667 0.00 0.00 0.00 3.91
777 870 2.775856 CCGCGCCTCTCTCTTGCTA 61.776 63.158 0.00 0.00 0.00 3.49
778 871 1.587613 CGCGCCTCTCTCTTGCTAC 60.588 63.158 0.00 0.00 0.00 3.58
779 872 1.587613 GCGCCTCTCTCTTGCTACG 60.588 63.158 0.00 0.00 0.00 3.51
780 873 1.994507 GCGCCTCTCTCTTGCTACGA 61.995 60.000 0.00 0.00 0.00 3.43
800 893 3.710722 CTCTTCCCCTGCTGCCGT 61.711 66.667 0.00 0.00 0.00 5.68
814 912 3.118454 CCGTTGCGTACTGCTGGG 61.118 66.667 10.27 5.86 46.63 4.45
815 913 2.357034 CGTTGCGTACTGCTGGGT 60.357 61.111 10.27 0.00 46.63 4.51
899 997 3.573967 GGAAAGTGCATGGGAAGAAGAAA 59.426 43.478 0.00 0.00 0.00 2.52
900 998 4.321527 GGAAAGTGCATGGGAAGAAGAAAG 60.322 45.833 0.00 0.00 0.00 2.62
901 999 2.165998 AGTGCATGGGAAGAAGAAAGC 58.834 47.619 0.00 0.00 0.00 3.51
903 1001 1.888512 TGCATGGGAAGAAGAAAGCAC 59.111 47.619 0.00 0.00 0.00 4.40
905 1003 1.470098 CATGGGAAGAAGAAAGCACCG 59.530 52.381 0.00 0.00 0.00 4.94
906 1004 0.250727 TGGGAAGAAGAAAGCACCGG 60.251 55.000 0.00 0.00 0.00 5.28
907 1005 0.960861 GGGAAGAAGAAAGCACCGGG 60.961 60.000 6.32 0.00 0.00 5.73
909 1007 1.587043 GAAGAAGAAAGCACCGGGCC 61.587 60.000 6.32 0.00 46.50 5.80
927 1025 2.965783 GCCTGAGTGAGCGTCAGA 59.034 61.111 9.24 0.00 43.65 3.27
928 1026 1.445238 GCCTGAGTGAGCGTCAGAC 60.445 63.158 9.24 0.00 43.65 3.51
929 1027 1.154131 CCTGAGTGAGCGTCAGACG 60.154 63.158 19.10 19.10 43.65 4.18
957 1055 1.228894 TGAGGTCTTCTGCGAGGGT 60.229 57.895 0.00 0.00 0.00 4.34
959 1057 2.435059 GGTCTTCTGCGAGGGTGC 60.435 66.667 0.00 0.00 0.00 5.01
989 1099 4.173924 GGCTGCTGGAGAGGGAGC 62.174 72.222 0.00 0.00 45.25 4.70
1080 1190 0.037232 GGTCAGTCACCCTCTTTCCG 60.037 60.000 0.00 0.00 39.69 4.30
1086 1196 2.037381 AGTCACCCTCTTTCCGTCTTTC 59.963 50.000 0.00 0.00 0.00 2.62
1090 1200 2.038689 ACCCTCTTTCCGTCTTTCCTTC 59.961 50.000 0.00 0.00 0.00 3.46
1091 1201 2.615747 CCCTCTTTCCGTCTTTCCTTCC 60.616 54.545 0.00 0.00 0.00 3.46
1097 1207 2.448453 TCCGTCTTTCCTTCCTCTCTC 58.552 52.381 0.00 0.00 0.00 3.20
1099 1209 2.763448 CCGTCTTTCCTTCCTCTCTCAT 59.237 50.000 0.00 0.00 0.00 2.90
1101 1211 3.181480 CGTCTTTCCTTCCTCTCTCATCC 60.181 52.174 0.00 0.00 0.00 3.51
1102 1212 4.030216 GTCTTTCCTTCCTCTCTCATCCT 58.970 47.826 0.00 0.00 0.00 3.24
1103 1213 4.099419 GTCTTTCCTTCCTCTCTCATCCTC 59.901 50.000 0.00 0.00 0.00 3.71
1117 1235 3.826157 CTCATCCTCCTGTCCATCTCTAC 59.174 52.174 0.00 0.00 0.00 2.59
1132 1250 0.611714 TCTACCGTTGCTTCCTTCCC 59.388 55.000 0.00 0.00 0.00 3.97
1141 1259 1.587043 GCTTCCTTCCCGCTCAAACC 61.587 60.000 0.00 0.00 0.00 3.27
1142 1260 1.298859 CTTCCTTCCCGCTCAAACCG 61.299 60.000 0.00 0.00 0.00 4.44
1172 1290 4.785453 CCCTTCCCCTGCGCTGTC 62.785 72.222 9.73 0.00 0.00 3.51
1175 1293 4.704833 TTCCCCTGCGCTGTCTGC 62.705 66.667 9.73 0.00 38.57 4.26
1198 1319 0.516524 CTTACGTTTCTTGCTCGCGC 60.517 55.000 0.00 0.00 0.00 6.86
1199 1320 1.893168 TTACGTTTCTTGCTCGCGCC 61.893 55.000 0.00 0.00 34.43 6.53
1200 1321 4.776953 CGTTTCTTGCTCGCGCCG 62.777 66.667 0.00 0.00 34.43 6.46
1251 1372 2.545532 GCAGAATCTCCTCTCGTCCATG 60.546 54.545 0.00 0.00 0.00 3.66
1256 1377 1.028905 CTCCTCTCGTCCATGTCCTC 58.971 60.000 0.00 0.00 0.00 3.71
1258 1379 1.395826 CCTCTCGTCCATGTCCTCCC 61.396 65.000 0.00 0.00 0.00 4.30
1266 1387 1.225704 CATGTCCTCCCCCTCTTGC 59.774 63.158 0.00 0.00 0.00 4.01
1291 1412 2.565394 CGTAGCTAGGCGCGTTTCG 61.565 63.158 8.36 3.01 45.59 3.46
1317 1438 1.701847 AGATTCTTGCCACAGACACCT 59.298 47.619 0.00 0.00 0.00 4.00
1327 1448 2.608261 CCACAGACACCTTCGTCTTCTC 60.608 54.545 0.00 0.00 43.84 2.87
1328 1449 1.614413 ACAGACACCTTCGTCTTCTCC 59.386 52.381 0.00 0.00 43.84 3.71
1333 1454 1.066787 CACCTTCGTCTTCTCCCTTCC 60.067 57.143 0.00 0.00 0.00 3.46
1334 1455 1.203199 ACCTTCGTCTTCTCCCTTCCT 60.203 52.381 0.00 0.00 0.00 3.36
1335 1456 1.903183 CCTTCGTCTTCTCCCTTCCTT 59.097 52.381 0.00 0.00 0.00 3.36
1336 1457 2.093921 CCTTCGTCTTCTCCCTTCCTTC 60.094 54.545 0.00 0.00 0.00 3.46
1337 1458 2.606751 TCGTCTTCTCCCTTCCTTCT 57.393 50.000 0.00 0.00 0.00 2.85
1341 1462 3.510360 CGTCTTCTCCCTTCCTTCTGTTA 59.490 47.826 0.00 0.00 0.00 2.41
1368 1495 0.095935 CGGTGAGATTCTTGCAAGCG 59.904 55.000 21.99 12.48 0.00 4.68
1374 1501 4.093408 GTGAGATTCTTGCAAGCGTATTCA 59.907 41.667 21.99 16.51 0.00 2.57
1395 1524 2.613506 CCGTGCGTCCCTTTGGAAC 61.614 63.158 0.00 0.00 44.07 3.62
1406 1535 2.553028 CCCTTTGGAACAGCAGAGCTTA 60.553 50.000 0.00 0.00 42.39 3.09
1541 1695 1.448985 TGCGCTTGGATCTTGGTTAC 58.551 50.000 9.73 0.00 0.00 2.50
1543 1697 1.666189 GCGCTTGGATCTTGGTTACTC 59.334 52.381 0.00 0.00 0.00 2.59
1544 1698 2.935238 GCGCTTGGATCTTGGTTACTCA 60.935 50.000 0.00 0.00 0.00 3.41
1545 1699 2.673368 CGCTTGGATCTTGGTTACTCAC 59.327 50.000 0.00 0.00 0.00 3.51
1553 1707 1.003233 CTTGGTTACTCACCCCCTGTC 59.997 57.143 0.00 0.00 46.68 3.51
1614 1768 0.517316 ACGGCTGTTTCATTTCGAGC 59.483 50.000 0.00 0.00 0.00 5.03
1651 1805 1.247567 ATTGGTTCTTGGGAAGTGCG 58.752 50.000 0.00 0.00 31.46 5.34
1677 1831 4.683334 GGCTGTGTGCGCCGTTTC 62.683 66.667 4.18 0.00 44.05 2.78
1678 1832 3.649986 GCTGTGTGCGCCGTTTCT 61.650 61.111 4.18 0.00 0.00 2.52
1679 1833 2.314647 GCTGTGTGCGCCGTTTCTA 61.315 57.895 4.18 0.00 0.00 2.10
1725 1879 3.403558 GTCCTGTCCCCTCTGCCC 61.404 72.222 0.00 0.00 0.00 5.36
1749 1903 5.164233 GCCTTCTTTTGTTTATGCTTCCTC 58.836 41.667 0.00 0.00 0.00 3.71
1774 1928 0.101579 GTGGCTCTCTACGCTTCTCC 59.898 60.000 0.00 0.00 0.00 3.71
1852 2009 0.449388 CGAGCTGGCATTCCTTGTTC 59.551 55.000 0.00 0.00 0.00 3.18
1925 2082 4.388378 AGCCTCTTATACGGTTCAGTTC 57.612 45.455 0.00 0.00 0.00 3.01
1930 2087 4.491676 TCTTATACGGTTCAGTTCACAGC 58.508 43.478 0.00 0.00 0.00 4.40
1976 2133 6.684609 AAACAACAACGAAAAACACTCTTC 57.315 33.333 0.00 0.00 0.00 2.87
1983 2140 7.758495 ACAACGAAAAACACTCTTCTTGTAAT 58.242 30.769 0.00 0.00 0.00 1.89
1984 2141 7.696453 ACAACGAAAAACACTCTTCTTGTAATG 59.304 33.333 0.00 0.00 0.00 1.90
2008 2169 7.450074 TGTGTACTGTAGTTCATTCATCCTTT 58.550 34.615 0.00 0.00 0.00 3.11
2012 2173 6.306987 ACTGTAGTTCATTCATCCTTTGGTT 58.693 36.000 0.00 0.00 0.00 3.67
2013 2174 6.207417 ACTGTAGTTCATTCATCCTTTGGTTG 59.793 38.462 0.00 0.00 0.00 3.77
2014 2175 5.476599 TGTAGTTCATTCATCCTTTGGTTGG 59.523 40.000 0.00 0.00 0.00 3.77
2015 2176 3.834231 AGTTCATTCATCCTTTGGTTGGG 59.166 43.478 0.00 0.00 0.00 4.12
2017 2178 3.430453 TCATTCATCCTTTGGTTGGGTC 58.570 45.455 0.00 0.00 0.00 4.46
2018 2179 3.075882 TCATTCATCCTTTGGTTGGGTCT 59.924 43.478 0.00 0.00 0.00 3.85
2019 2180 2.879103 TCATCCTTTGGTTGGGTCTC 57.121 50.000 0.00 0.00 0.00 3.36
2020 2181 2.061848 TCATCCTTTGGTTGGGTCTCA 58.938 47.619 0.00 0.00 0.00 3.27
2021 2182 2.649312 TCATCCTTTGGTTGGGTCTCAT 59.351 45.455 0.00 0.00 0.00 2.90
2022 2183 3.075882 TCATCCTTTGGTTGGGTCTCATT 59.924 43.478 0.00 0.00 0.00 2.57
2023 2184 3.611025 TCCTTTGGTTGGGTCTCATTT 57.389 42.857 0.00 0.00 0.00 2.32
2024 2185 4.733077 TCCTTTGGTTGGGTCTCATTTA 57.267 40.909 0.00 0.00 0.00 1.40
2025 2186 4.403734 TCCTTTGGTTGGGTCTCATTTAC 58.596 43.478 0.00 0.00 0.00 2.01
2149 2337 8.299990 TGACTTCCTTTTGTCTTTTAAATCCA 57.700 30.769 0.00 0.00 34.57 3.41
2156 2344 9.108284 CCTTTTGTCTTTTAAATCCAAACATGT 57.892 29.630 0.00 0.00 0.00 3.21
2159 2347 9.442047 TTTGTCTTTTAAATCCAAACATGTTGT 57.558 25.926 12.82 0.00 0.00 3.32
2243 2433 4.932200 GCTGAGCGCCAGTATTAATCTAAT 59.068 41.667 21.68 0.00 44.71 1.73
2245 2435 4.690748 TGAGCGCCAGTATTAATCTAATGC 59.309 41.667 2.29 0.00 0.00 3.56
2276 2466 2.328099 GCCCTGCTGTTCGTCTTGG 61.328 63.158 0.00 0.00 0.00 3.61
2277 2467 2.328099 CCCTGCTGTTCGTCTTGGC 61.328 63.158 0.00 0.00 0.00 4.52
2278 2468 1.597854 CCTGCTGTTCGTCTTGGCA 60.598 57.895 0.00 0.00 0.00 4.92
2279 2469 0.957395 CCTGCTGTTCGTCTTGGCAT 60.957 55.000 0.00 0.00 32.39 4.40
2381 2571 3.349927 TCATTGATCAGGCCTCACTTTG 58.650 45.455 0.00 0.00 0.00 2.77
2400 2590 4.829872 TTGCCTCCGGTTAATCTAAAGA 57.170 40.909 0.00 0.00 0.00 2.52
2401 2591 4.829872 TGCCTCCGGTTAATCTAAAGAA 57.170 40.909 0.00 0.00 0.00 2.52
2402 2592 5.367945 TGCCTCCGGTTAATCTAAAGAAT 57.632 39.130 0.00 0.00 0.00 2.40
2403 2593 5.365619 TGCCTCCGGTTAATCTAAAGAATC 58.634 41.667 0.00 0.00 0.00 2.52
2404 2594 4.755629 GCCTCCGGTTAATCTAAAGAATCC 59.244 45.833 0.00 0.00 0.00 3.01
2405 2595 5.686650 GCCTCCGGTTAATCTAAAGAATCCA 60.687 44.000 0.00 0.00 0.00 3.41
2406 2596 5.758784 CCTCCGGTTAATCTAAAGAATCCAC 59.241 44.000 0.00 0.00 0.00 4.02
2407 2597 6.408206 CCTCCGGTTAATCTAAAGAATCCACT 60.408 42.308 0.00 0.00 0.00 4.00
2408 2598 6.346096 TCCGGTTAATCTAAAGAATCCACTG 58.654 40.000 0.00 0.00 0.00 3.66
2409 2599 5.007724 CCGGTTAATCTAAAGAATCCACTGC 59.992 44.000 0.00 0.00 0.00 4.40
2410 2600 5.584649 CGGTTAATCTAAAGAATCCACTGCA 59.415 40.000 0.00 0.00 0.00 4.41
2411 2601 6.093495 CGGTTAATCTAAAGAATCCACTGCAA 59.907 38.462 0.00 0.00 0.00 4.08
2412 2602 7.475840 GGTTAATCTAAAGAATCCACTGCAAG 58.524 38.462 0.00 0.00 42.29 4.01
2426 2616 2.354259 CTGCAAGTTGATGGTCTCTCC 58.646 52.381 7.16 0.00 0.00 3.71
2496 2686 7.929941 AAAAAGAAATGGGTTTAAAGCACAA 57.070 28.000 18.43 4.67 0.00 3.33
2497 2687 7.929941 AAAAGAAATGGGTTTAAAGCACAAA 57.070 28.000 18.43 2.32 0.00 2.83
2498 2688 7.552458 AAAGAAATGGGTTTAAAGCACAAAG 57.448 32.000 18.43 0.00 0.00 2.77
2499 2689 5.056480 AGAAATGGGTTTAAAGCACAAAGC 58.944 37.500 18.43 1.46 46.19 3.51
2509 2699 1.929376 GCACAAAGCAGCACAAAGC 59.071 52.632 0.00 0.00 44.79 3.51
2638 2830 4.010349 GTGGGATTTCTGGACCTTGTTAG 58.990 47.826 0.00 0.00 0.00 2.34
2642 2834 5.880887 GGGATTTCTGGACCTTGTTAGTTAG 59.119 44.000 0.00 0.00 0.00 2.34
2644 2836 7.310858 GGGATTTCTGGACCTTGTTAGTTAGTA 60.311 40.741 0.00 0.00 0.00 1.82
2645 2837 8.098912 GGATTTCTGGACCTTGTTAGTTAGTAA 58.901 37.037 0.00 0.00 0.00 2.24
2646 2838 9.668497 GATTTCTGGACCTTGTTAGTTAGTAAT 57.332 33.333 0.00 0.00 0.00 1.89
2647 2839 8.842358 TTTCTGGACCTTGTTAGTTAGTAATG 57.158 34.615 0.00 0.00 0.00 1.90
2648 2840 7.786046 TCTGGACCTTGTTAGTTAGTAATGA 57.214 36.000 0.00 0.00 0.00 2.57
2649 2841 8.197592 TCTGGACCTTGTTAGTTAGTAATGAA 57.802 34.615 0.00 0.00 0.00 2.57
2650 2842 8.092687 TCTGGACCTTGTTAGTTAGTAATGAAC 58.907 37.037 0.00 3.92 0.00 3.18
2652 2844 9.092338 TGGACCTTGTTAGTTAGTAATGAACTA 57.908 33.333 9.83 0.00 39.80 2.24
2669 2969 3.214696 ACTAATGATTAGTGGCCAGCC 57.785 47.619 16.47 0.38 44.43 4.85
2673 2973 0.179048 TGATTAGTGGCCAGCCGATG 60.179 55.000 5.11 0.00 39.42 3.84
2812 3112 5.732633 TGCATGTTTTTCCTCCATTATTGG 58.267 37.500 0.00 0.00 45.15 3.16
2821 3121 5.506730 TCCTCCATTATTGGTGTGTTGTA 57.493 39.130 3.65 0.00 44.06 2.41
2884 3184 2.755836 ACGCTGTTGTCATGTGTTTC 57.244 45.000 0.00 0.00 0.00 2.78
2907 3207 2.685897 AGAGAGCGACTAGTCAATGGTC 59.314 50.000 22.37 18.86 36.11 4.02
2909 3209 2.425312 AGAGCGACTAGTCAATGGTCTG 59.575 50.000 22.29 7.67 37.26 3.51
2910 3210 1.134965 AGCGACTAGTCAATGGTCTGC 60.135 52.381 22.37 14.09 37.26 4.26
2926 3226 2.071844 CTGCGGGTGACGGTCGATAT 62.072 60.000 3.34 0.00 44.51 1.63
2931 3231 1.134907 GGGTGACGGTCGATATGTTGT 60.135 52.381 3.34 0.00 0.00 3.32
2933 3233 2.997986 GGTGACGGTCGATATGTTGTTT 59.002 45.455 3.34 0.00 0.00 2.83
2934 3234 3.434299 GGTGACGGTCGATATGTTGTTTT 59.566 43.478 3.34 0.00 0.00 2.43
2935 3235 4.083696 GGTGACGGTCGATATGTTGTTTTT 60.084 41.667 3.34 0.00 0.00 1.94
2954 3260 2.623878 TTTGCGGGAGACTGTTAACA 57.376 45.000 8.28 8.28 39.64 2.41
2970 3277 9.979270 GACTGTTAACATAATCTCAGATGTTTG 57.021 33.333 9.13 0.00 42.27 2.93
3032 3364 3.181501 ACAATTGGTATGCGTGATTTCGG 60.182 43.478 10.83 0.00 0.00 4.30
3035 3367 1.164041 GGTATGCGTGATTTCGGGGG 61.164 60.000 0.00 0.00 0.00 5.40
3036 3368 0.463116 GTATGCGTGATTTCGGGGGT 60.463 55.000 0.00 0.00 0.00 4.95
3037 3369 0.462937 TATGCGTGATTTCGGGGGTG 60.463 55.000 0.00 0.00 0.00 4.61
3041 3373 0.802494 CGTGATTTCGGGGGTGAAAG 59.198 55.000 0.00 0.00 40.86 2.62
3076 3418 0.900421 AGGCGGGTACAAGAACTACC 59.100 55.000 0.00 0.00 33.96 3.18
3186 3530 6.324561 TGCTTACAAGTTTGTTCATATGCA 57.675 33.333 2.46 0.00 42.35 3.96
3192 3536 6.615088 ACAAGTTTGTTCATATGCACAGATC 58.385 36.000 8.21 4.06 38.47 2.75
3232 3576 5.163571 TGCAACGGATGTTATTGTGCATATT 60.164 36.000 0.00 0.00 36.28 1.28
3243 3587 5.981088 ATTGTGCATATTGGTGAAGTCAA 57.019 34.783 0.00 0.00 0.00 3.18
3365 3710 5.747197 GTGGTGGAAGTAGATATGTGTTACG 59.253 44.000 0.00 0.00 0.00 3.18
3392 3738 4.157289 TGGATACGTAGTTCTTCAGACACC 59.843 45.833 0.08 0.00 37.78 4.16
3574 3920 8.546597 ACACCACCTTAAAATATTTTTGATGC 57.453 30.769 18.14 0.00 0.00 3.91
3591 3938 5.357742 TGATGCTTAATAGACTGCCTTCA 57.642 39.130 0.00 0.00 0.00 3.02
3627 3974 7.009815 CCAAACAAATCGAAGAATCATCCATTG 59.990 37.037 0.00 0.00 43.58 2.82
3826 4181 6.671605 TGGTAAACTTTAGTTTTACCAGGGT 58.328 36.000 18.45 0.00 45.07 4.34
3867 4222 5.147330 ACTTGCCTAAATTTTAGGGTTGC 57.853 39.130 28.30 17.87 35.29 4.17
3896 4251 6.825721 AGACTCCCATGACAATAATTCAACTC 59.174 38.462 0.00 0.00 0.00 3.01
3969 4324 7.330208 ACAAGCTTAATCATTTTCATCAAGTGC 59.670 33.333 0.00 0.00 0.00 4.40
3982 4337 3.540314 TCAAGTGCTTGGCATTTTGTT 57.460 38.095 11.47 0.00 41.91 2.83
3985 4340 4.099266 TCAAGTGCTTGGCATTTTGTTACT 59.901 37.500 11.47 0.00 41.91 2.24
3986 4341 4.670896 AGTGCTTGGCATTTTGTTACTT 57.329 36.364 0.00 0.00 41.91 2.24
3987 4342 4.620982 AGTGCTTGGCATTTTGTTACTTC 58.379 39.130 0.00 0.00 41.91 3.01
4144 4499 2.224606 CTTCTGTCCAAGAGCAGCAAA 58.775 47.619 0.00 0.00 35.91 3.68
4190 4545 3.242867 ACTGAGAAAGGGACAGATGACA 58.757 45.455 0.00 0.00 35.85 3.58
4210 4565 6.533730 TGACATCCACATAGATGATTTACCC 58.466 40.000 8.44 0.00 45.43 3.69
4219 4574 0.991355 ATGATTTACCCGGGGGAGCA 60.991 55.000 27.92 19.01 38.96 4.26
4324 4679 2.087646 GCAGAGTTCCTTGGAATGACC 58.912 52.381 5.32 0.00 39.54 4.02
4369 4724 8.567285 ACTTGATATTCAAAATCGAGGTCTTT 57.433 30.769 0.00 0.00 38.63 2.52
4402 4757 1.219393 CCTCCGGAGCTGGAAAGAC 59.781 63.158 26.87 0.00 37.64 3.01
4435 4790 3.559024 CAGAGCACGAAGGCACTG 58.441 61.111 10.11 10.11 43.96 3.66
4498 4853 1.298859 ACGCCATTGCTTCGAAGACC 61.299 55.000 28.95 12.35 34.32 3.85
4504 4859 3.368427 CCATTGCTTCGAAGACCTCTGTA 60.368 47.826 28.95 4.19 34.32 2.74
4588 4943 0.467290 TTGAGCCGGCAGGAAAAACT 60.467 50.000 31.54 3.33 41.02 2.66
4837 5192 0.382158 TGCCGTCAGATAAGAGCTCG 59.618 55.000 8.37 0.00 0.00 5.03
5010 5365 1.341187 TGAGGGCATGCATGATGTTCA 60.341 47.619 30.64 21.43 34.14 3.18
5011 5366 1.961394 GAGGGCATGCATGATGTTCAT 59.039 47.619 30.64 10.58 37.65 2.57
5359 5716 7.981789 CAGTACTTTCTGCTATACTGAATGGAA 59.018 37.037 4.59 0.00 44.81 3.53
5367 5724 7.712639 TCTGCTATACTGAATGGAAACTTGATC 59.287 37.037 0.00 0.00 0.00 2.92
5375 5732 9.927081 ACTGAATGGAAACTTGATCCTAATAAT 57.073 29.630 0.00 0.00 37.85 1.28
5442 5799 5.745514 CATGGAAGCAGACTTGATAAATCG 58.254 41.667 0.00 0.00 35.82 3.34
5448 5805 3.375299 GCAGACTTGATAAATCGCCTGTT 59.625 43.478 0.00 0.00 0.00 3.16
5461 5818 1.406069 CGCCTGTTTGCTATCTCACCT 60.406 52.381 0.00 0.00 0.00 4.00
5466 5823 5.358160 GCCTGTTTGCTATCTCACCTTTTAT 59.642 40.000 0.00 0.00 0.00 1.40
5479 5836 8.153221 TCTCACCTTTTATAAGACCATAACCA 57.847 34.615 0.00 0.00 32.92 3.67
5546 5904 7.761651 AAACAAAGCAGACAAAAAGAAGATC 57.238 32.000 0.00 0.00 0.00 2.75
5576 5934 5.233902 CCTGATAGATGTCAAGAAGCTTTCG 59.766 44.000 0.00 0.00 34.02 3.46
5684 6042 0.875059 GTTCAAGCAGTGTACCAGCC 59.125 55.000 0.00 0.00 0.00 4.85
5851 6209 1.970352 GAGCTCAGGGGAGGCAGAAG 61.970 65.000 9.40 0.00 41.67 2.85
5891 6249 2.495270 TGTTGGCAGAAACAGCTTCAAA 59.505 40.909 0.00 0.00 35.16 2.69
5894 6252 3.225104 TGGCAGAAACAGCTTCAAAGAT 58.775 40.909 0.00 0.00 36.40 2.40
5897 6255 4.261741 GGCAGAAACAGCTTCAAAGATCAA 60.262 41.667 0.00 0.00 36.40 2.57
5909 6267 3.318839 TCAAAGATCAAGTTGTTGGCAGG 59.681 43.478 2.11 0.00 34.09 4.85
5930 6288 2.262423 ACAGCTTCAAGGACCAACTC 57.738 50.000 0.00 0.00 0.00 3.01
5978 6336 3.648009 GAGGAGGATATTCGACAAGCTG 58.352 50.000 0.00 0.00 0.00 4.24
6141 6499 2.192263 AGGGGCTCTTCTTACTCCTTG 58.808 52.381 0.00 0.00 0.00 3.61
6142 6500 1.909986 GGGGCTCTTCTTACTCCTTGT 59.090 52.381 0.00 0.00 0.00 3.16
6143 6501 2.093394 GGGGCTCTTCTTACTCCTTGTC 60.093 54.545 0.00 0.00 0.00 3.18
6259 6617 8.868522 TCTGGTCAATGAAGAGAAAATATGTT 57.131 30.769 0.00 0.00 0.00 2.71
6260 6618 9.300681 TCTGGTCAATGAAGAGAAAATATGTTT 57.699 29.630 0.00 0.00 0.00 2.83
6314 6675 7.013750 TGCTCTCTGTATGGTTATCTAAGTCAG 59.986 40.741 0.00 0.00 0.00 3.51
6345 6706 7.012704 CCGTAGCTTACCAGTGTATCTTAACTA 59.987 40.741 0.00 0.00 0.00 2.24
6414 6776 7.923878 TGAAGAAAAAGTTAAAAGGGTATGTGC 59.076 33.333 0.00 0.00 0.00 4.57
6415 6777 6.443792 AGAAAAAGTTAAAAGGGTATGTGCG 58.556 36.000 0.00 0.00 0.00 5.34
6438 7068 2.223829 ACACTCGTTCTTGTGTCCAGAG 60.224 50.000 0.00 0.00 42.95 3.35
6482 7112 4.631131 CGAACCAGCCTCACATGAATATA 58.369 43.478 0.00 0.00 0.00 0.86
6483 7113 5.056480 CGAACCAGCCTCACATGAATATAA 58.944 41.667 0.00 0.00 0.00 0.98
6485 7115 6.205464 CGAACCAGCCTCACATGAATATAATT 59.795 38.462 0.00 0.00 0.00 1.40
6486 7116 7.255242 CGAACCAGCCTCACATGAATATAATTT 60.255 37.037 0.00 0.00 0.00 1.82
6487 7117 8.995027 AACCAGCCTCACATGAATATAATTTA 57.005 30.769 0.00 0.00 0.00 1.40
6522 7152 5.590259 TCAATCTTTCTGCATTTAGCCCTAC 59.410 40.000 0.00 0.00 44.83 3.18
6524 7154 5.116084 TCTTTCTGCATTTAGCCCTACAT 57.884 39.130 0.00 0.00 44.83 2.29
6528 7167 4.854173 TCTGCATTTAGCCCTACATCAAA 58.146 39.130 0.00 0.00 44.83 2.69
6549 7188 6.039717 TCAAACTTGAATTCAGGAAAGAGTGG 59.960 38.462 23.00 11.41 33.55 4.00
6560 7200 2.293399 GGAAAGAGTGGCGAAACACAAT 59.707 45.455 7.83 0.00 43.72 2.71
6571 7212 4.150451 GGCGAAACACAATCAAAATTCAGG 59.850 41.667 0.00 0.00 0.00 3.86
6622 7263 5.542779 AGCTAATAACAGAGGCGGATAAAG 58.457 41.667 0.00 0.00 0.00 1.85
6629 7270 0.651031 GAGGCGGATAAAGTTGCGAC 59.349 55.000 0.00 0.00 38.98 5.19
6713 7360 8.792830 AGCTAGTTTGTTATTATCTCTTTGCA 57.207 30.769 0.00 0.00 0.00 4.08
6714 7361 9.231297 AGCTAGTTTGTTATTATCTCTTTGCAA 57.769 29.630 0.00 0.00 0.00 4.08
6715 7362 9.278734 GCTAGTTTGTTATTATCTCTTTGCAAC 57.721 33.333 0.00 0.00 0.00 4.17
6718 7365 8.082242 AGTTTGTTATTATCTCTTTGCAACACC 58.918 33.333 0.00 0.00 0.00 4.16
6765 7412 1.622811 CACTTCTCTCAGGAGGCAAGT 59.377 52.381 7.55 7.55 37.21 3.16
6915 7566 5.289434 GCCTGCAAGCAGAAAATAATTACAC 59.711 40.000 22.76 0.00 46.30 2.90
6938 7589 3.433031 CGTTAGTCTGGGCCATCCAAATA 60.433 47.826 6.72 0.00 46.51 1.40
6944 7595 4.042187 GTCTGGGCCATCCAAATACTAGAT 59.958 45.833 6.72 0.00 46.51 1.98
6965 7617 3.242897 TACAAAGTGTCCCCCGCCG 62.243 63.158 0.00 0.00 0.00 6.46
6978 7630 1.202604 CCCCGCCGTTGTTACAGATAT 60.203 52.381 0.00 0.00 0.00 1.63
7000 7656 5.815233 TGAGGAACAGAGAGAGTTCATTT 57.185 39.130 8.15 0.00 45.45 2.32
7051 7730 6.716934 TCGAAAGAAGAGTAATATCAGGCT 57.283 37.500 0.00 0.00 37.03 4.58
7052 7731 7.113658 TCGAAAGAAGAGTAATATCAGGCTT 57.886 36.000 0.00 0.00 37.03 4.35
7053 7732 7.556844 TCGAAAGAAGAGTAATATCAGGCTTT 58.443 34.615 0.00 0.00 37.03 3.51
7054 7733 7.492669 TCGAAAGAAGAGTAATATCAGGCTTTG 59.507 37.037 0.00 0.00 37.03 2.77
7055 7734 7.278868 CGAAAGAAGAGTAATATCAGGCTTTGT 59.721 37.037 0.00 0.00 0.00 2.83
7056 7735 8.870075 AAAGAAGAGTAATATCAGGCTTTGTT 57.130 30.769 0.00 0.00 0.00 2.83
7057 7736 9.959721 AAAGAAGAGTAATATCAGGCTTTGTTA 57.040 29.630 0.00 0.00 0.00 2.41
7115 7794 1.448540 AACGCGCTCCTTGATCCTG 60.449 57.895 5.73 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.671177 CGGCACAGGTCGCTTTCTG 61.671 63.158 0.00 0.00 34.18 3.02
1 2 2.357517 CGGCACAGGTCGCTTTCT 60.358 61.111 0.00 0.00 34.18 2.52
222 257 2.739913 CGTTTAGTCTTTTGATGCCCGA 59.260 45.455 0.00 0.00 0.00 5.14
224 259 3.078837 TCCGTTTAGTCTTTTGATGCCC 58.921 45.455 0.00 0.00 0.00 5.36
225 260 4.965119 ATCCGTTTAGTCTTTTGATGCC 57.035 40.909 0.00 0.00 0.00 4.40
226 261 9.651718 CTAATTATCCGTTTAGTCTTTTGATGC 57.348 33.333 0.00 0.00 0.00 3.91
262 297 9.553064 GATTGTATAATATGCTCCCAGGATTAG 57.447 37.037 0.00 0.00 0.00 1.73
274 309 9.669353 CTTCCACTGTTTGATTGTATAATATGC 57.331 33.333 0.00 0.00 0.00 3.14
282 317 7.721842 TGGTATTTCTTCCACTGTTTGATTGTA 59.278 33.333 0.00 0.00 0.00 2.41
307 342 0.250989 TGGGTTAGGAAAAGGGCGTG 60.251 55.000 0.00 0.00 0.00 5.34
309 344 1.623163 TTTGGGTTAGGAAAAGGGCG 58.377 50.000 0.00 0.00 0.00 6.13
382 454 1.972752 TTAAAAACTCGCCCCCGGC 60.973 57.895 0.00 0.00 46.75 6.13
383 455 0.890090 TGTTAAAAACTCGCCCCCGG 60.890 55.000 0.00 0.00 34.56 5.73
384 456 1.170442 ATGTTAAAAACTCGCCCCCG 58.830 50.000 0.00 0.00 0.00 5.73
416 495 0.321653 TGCTCCTCTTTTCCTTCGCC 60.322 55.000 0.00 0.00 0.00 5.54
430 509 0.320771 TTTTCCTCTGCGTCTGCTCC 60.321 55.000 0.00 0.00 43.34 4.70
462 541 0.313672 GCAGCAGTATCTCCCTCTCG 59.686 60.000 0.00 0.00 0.00 4.04
468 547 1.601663 CGCAGTAGCAGCAGTATCTCC 60.602 57.143 0.00 0.00 42.27 3.71
495 577 1.436195 CTCAACGTGGTGTGGTGTGG 61.436 60.000 0.00 0.00 0.00 4.17
496 578 2.013807 CTCAACGTGGTGTGGTGTG 58.986 57.895 0.00 0.00 0.00 3.82
497 579 1.817941 GCTCAACGTGGTGTGGTGT 60.818 57.895 0.00 0.00 0.00 4.16
498 580 2.542907 GGCTCAACGTGGTGTGGTG 61.543 63.158 0.00 0.00 0.00 4.17
499 581 2.203153 GGCTCAACGTGGTGTGGT 60.203 61.111 0.00 0.00 0.00 4.16
515 597 1.429021 CCCGTCGCAATGTCAATGG 59.571 57.895 0.00 0.00 0.00 3.16
533 619 4.567385 CTCTCCTGCTCGCTCCGC 62.567 72.222 0.00 0.00 0.00 5.54
534 620 3.898509 CCTCTCCTGCTCGCTCCG 61.899 72.222 0.00 0.00 0.00 4.63
535 621 2.441164 TCCTCTCCTGCTCGCTCC 60.441 66.667 0.00 0.00 0.00 4.70
536 622 2.489275 CCTCCTCTCCTGCTCGCTC 61.489 68.421 0.00 0.00 0.00 5.03
540 626 3.535962 CCGCCTCCTCTCCTGCTC 61.536 72.222 0.00 0.00 0.00 4.26
543 629 2.664081 AAAGCCGCCTCCTCTCCTG 61.664 63.158 0.00 0.00 0.00 3.86
544 630 2.284995 AAAGCCGCCTCCTCTCCT 60.285 61.111 0.00 0.00 0.00 3.69
545 631 2.124942 CAAAGCCGCCTCCTCTCC 60.125 66.667 0.00 0.00 0.00 3.71
546 632 2.124942 CCAAAGCCGCCTCCTCTC 60.125 66.667 0.00 0.00 0.00 3.20
547 633 4.416738 GCCAAAGCCGCCTCCTCT 62.417 66.667 0.00 0.00 0.00 3.69
580 670 2.886604 CTGCTCTCTGCGCTCTGC 60.887 66.667 9.73 6.72 46.63 4.26
581 671 1.226745 CTCTGCTCTCTGCGCTCTG 60.227 63.158 9.73 0.00 46.63 3.35
584 674 3.359515 CTGCTCTGCTCTCTGCGCT 62.360 63.158 9.73 0.00 46.63 5.92
585 675 2.886604 CTGCTCTGCTCTCTGCGC 60.887 66.667 0.00 0.00 46.63 6.09
586 676 2.886604 GCTGCTCTGCTCTCTGCG 60.887 66.667 0.00 0.00 46.63 5.18
587 677 2.886604 CGCTGCTCTGCTCTCTGC 60.887 66.667 0.00 0.00 43.25 4.26
588 678 2.202770 CCGCTGCTCTGCTCTCTG 60.203 66.667 0.00 0.00 0.00 3.35
589 679 4.146075 GCCGCTGCTCTGCTCTCT 62.146 66.667 0.00 0.00 33.53 3.10
629 722 2.362889 CCATGGAAGGGGTGGTGC 60.363 66.667 5.56 0.00 31.11 5.01
647 740 3.490759 GATGGCGTGGCGTGTGAG 61.491 66.667 0.00 0.00 0.00 3.51
660 753 1.361271 GCGGCAATGATGGTGATGG 59.639 57.895 0.00 0.00 0.00 3.51
686 779 0.252927 GGGGATATGGAGGGAGGGAG 60.253 65.000 0.00 0.00 0.00 4.30
708 801 0.986992 CGCAGCAGCAGCAATTAAAC 59.013 50.000 10.77 0.00 45.49 2.01
730 823 3.145473 TTGGTGTGGGGGAGGCTTG 62.145 63.158 0.00 0.00 0.00 4.01
767 860 3.064820 GGAAGAGAGTCGTAGCAAGAGAG 59.935 52.174 0.00 0.00 0.00 3.20
768 861 3.011119 GGAAGAGAGTCGTAGCAAGAGA 58.989 50.000 0.00 0.00 0.00 3.10
769 862 2.098443 GGGAAGAGAGTCGTAGCAAGAG 59.902 54.545 0.00 0.00 0.00 2.85
770 863 2.093106 GGGAAGAGAGTCGTAGCAAGA 58.907 52.381 0.00 0.00 0.00 3.02
771 864 1.135333 GGGGAAGAGAGTCGTAGCAAG 59.865 57.143 0.00 0.00 0.00 4.01
772 865 1.183549 GGGGAAGAGAGTCGTAGCAA 58.816 55.000 0.00 0.00 0.00 3.91
773 866 0.331954 AGGGGAAGAGAGTCGTAGCA 59.668 55.000 0.00 0.00 0.00 3.49
774 867 0.741915 CAGGGGAAGAGAGTCGTAGC 59.258 60.000 0.00 0.00 0.00 3.58
775 868 0.741915 GCAGGGGAAGAGAGTCGTAG 59.258 60.000 0.00 0.00 0.00 3.51
776 869 0.331954 AGCAGGGGAAGAGAGTCGTA 59.668 55.000 0.00 0.00 0.00 3.43
777 870 1.077625 AGCAGGGGAAGAGAGTCGT 59.922 57.895 0.00 0.00 0.00 4.34
778 871 1.515020 CAGCAGGGGAAGAGAGTCG 59.485 63.158 0.00 0.00 0.00 4.18
779 872 1.220477 GCAGCAGGGGAAGAGAGTC 59.780 63.158 0.00 0.00 0.00 3.36
780 873 2.297129 GGCAGCAGGGGAAGAGAGT 61.297 63.158 0.00 0.00 0.00 3.24
800 893 2.031919 CCACCCAGCAGTACGCAA 59.968 61.111 11.30 0.00 46.13 4.85
848 946 4.244802 GGACGGCGCGAGAGAGAG 62.245 72.222 12.10 0.00 0.00 3.20
873 971 1.821136 CTTCCCATGCACTTTCCTTCC 59.179 52.381 0.00 0.00 0.00 3.46
874 972 2.795329 TCTTCCCATGCACTTTCCTTC 58.205 47.619 0.00 0.00 0.00 3.46
879 977 3.006217 GCTTTCTTCTTCCCATGCACTTT 59.994 43.478 0.00 0.00 0.00 2.66
926 1024 0.241481 GACCTCACTGTCTGTCCGTC 59.759 60.000 0.00 0.00 32.39 4.79
927 1025 0.178987 AGACCTCACTGTCTGTCCGT 60.179 55.000 0.00 0.00 43.80 4.69
928 1026 0.962489 AAGACCTCACTGTCTGTCCG 59.038 55.000 0.00 0.00 44.68 4.79
929 1027 2.029470 CAGAAGACCTCACTGTCTGTCC 60.029 54.545 0.00 0.00 44.68 4.02
957 1055 2.835431 GCCTCTAGCTCCCTCGCA 60.835 66.667 0.00 0.00 38.99 5.10
978 1076 3.347590 TCCCTCGCTCCCTCTCCA 61.348 66.667 0.00 0.00 0.00 3.86
989 1099 3.876274 TGAACTTCATCTTCTCCCTCG 57.124 47.619 0.00 0.00 0.00 4.63
1077 1187 2.225041 TGAGAGAGGAAGGAAAGACGGA 60.225 50.000 0.00 0.00 0.00 4.69
1080 1190 4.030216 AGGATGAGAGAGGAAGGAAAGAC 58.970 47.826 0.00 0.00 0.00 3.01
1086 1196 2.318908 CAGGAGGATGAGAGAGGAAGG 58.681 57.143 0.00 0.00 0.00 3.46
1090 1200 1.063341 TGGACAGGAGGATGAGAGAGG 60.063 57.143 0.00 0.00 0.00 3.69
1091 1201 2.450867 TGGACAGGAGGATGAGAGAG 57.549 55.000 0.00 0.00 0.00 3.20
1097 1207 2.896685 GGTAGAGATGGACAGGAGGATG 59.103 54.545 0.00 0.00 0.00 3.51
1099 1209 1.133761 CGGTAGAGATGGACAGGAGGA 60.134 57.143 0.00 0.00 0.00 3.71
1101 1211 2.060050 ACGGTAGAGATGGACAGGAG 57.940 55.000 0.00 0.00 0.00 3.69
1102 1212 2.100197 CAACGGTAGAGATGGACAGGA 58.900 52.381 0.00 0.00 0.00 3.86
1103 1213 1.471676 GCAACGGTAGAGATGGACAGG 60.472 57.143 0.00 0.00 0.00 4.00
1117 1235 3.431725 GCGGGAAGGAAGCAACGG 61.432 66.667 0.00 0.00 0.00 4.44
1146 1264 2.678934 GGGGAAGGGAAAACCCGC 60.679 66.667 0.00 0.00 44.09 6.13
1158 1276 4.704833 GCAGACAGCGCAGGGGAA 62.705 66.667 11.47 0.00 0.00 3.97
1172 1290 2.802816 AGCAAGAAACGTAAGACAGCAG 59.197 45.455 0.00 0.00 43.62 4.24
1175 1293 2.159960 GCGAGCAAGAAACGTAAGACAG 60.160 50.000 0.00 0.00 43.62 3.51
1236 1357 0.626382 AGGACATGGACGAGAGGAGA 59.374 55.000 0.00 0.00 0.00 3.71
1240 1361 1.395826 GGGGAGGACATGGACGAGAG 61.396 65.000 0.00 0.00 0.00 3.20
1251 1372 0.032017 TAGAGCAAGAGGGGGAGGAC 60.032 60.000 0.00 0.00 0.00 3.85
1256 1377 1.258445 ACGTGTAGAGCAAGAGGGGG 61.258 60.000 0.00 0.00 0.00 5.40
1258 1379 1.202313 GCTACGTGTAGAGCAAGAGGG 60.202 57.143 11.12 0.00 38.62 4.30
1266 1387 0.041135 GCGCCTAGCTACGTGTAGAG 60.041 60.000 11.12 0.62 44.04 2.43
1291 1412 1.153958 GTGGCAAGAATCTTGCGGC 60.154 57.895 33.18 25.68 45.78 6.53
1296 1417 2.107204 AGGTGTCTGTGGCAAGAATCTT 59.893 45.455 0.00 0.00 0.00 2.40
1317 1438 2.563179 CAGAAGGAAGGGAGAAGACGAA 59.437 50.000 0.00 0.00 0.00 3.85
1323 1444 3.008049 GCACTAACAGAAGGAAGGGAGAA 59.992 47.826 0.00 0.00 0.00 2.87
1327 1448 2.355209 GGAGCACTAACAGAAGGAAGGG 60.355 54.545 0.00 0.00 0.00 3.95
1328 1449 2.355209 GGGAGCACTAACAGAAGGAAGG 60.355 54.545 0.00 0.00 0.00 3.46
1333 1454 0.608640 ACCGGGAGCACTAACAGAAG 59.391 55.000 6.32 0.00 0.00 2.85
1334 1455 0.320374 CACCGGGAGCACTAACAGAA 59.680 55.000 6.32 0.00 0.00 3.02
1335 1456 0.541063 TCACCGGGAGCACTAACAGA 60.541 55.000 6.32 0.00 0.00 3.41
1336 1457 0.108615 CTCACCGGGAGCACTAACAG 60.109 60.000 6.32 0.00 36.69 3.16
1337 1458 0.541063 TCTCACCGGGAGCACTAACA 60.541 55.000 6.32 0.00 43.70 2.41
1341 1462 0.616111 AGAATCTCACCGGGAGCACT 60.616 55.000 6.32 6.91 43.70 4.40
1368 1495 1.641677 GGACGCACGGCATGAATAC 59.358 57.895 0.00 0.00 0.00 1.89
1374 1501 3.055719 CAAAGGGACGCACGGCAT 61.056 61.111 0.00 0.00 0.00 4.40
1395 1524 2.735663 CGCCATTCTATAAGCTCTGCTG 59.264 50.000 0.00 0.00 39.62 4.41
1406 1535 1.594293 CGAACGGCCGCCATTCTAT 60.594 57.895 28.58 0.00 0.00 1.98
1437 1566 2.501723 AGTAAGAAGGTGGTGATGCGAT 59.498 45.455 0.00 0.00 0.00 4.58
1439 1568 2.271800 GAGTAAGAAGGTGGTGATGCG 58.728 52.381 0.00 0.00 0.00 4.73
1541 1695 1.221840 CAATCGGACAGGGGGTGAG 59.778 63.158 0.00 0.00 0.00 3.51
1543 1697 1.622607 TAGCAATCGGACAGGGGGTG 61.623 60.000 0.00 0.00 0.00 4.61
1544 1698 0.912487 TTAGCAATCGGACAGGGGGT 60.912 55.000 0.00 0.00 0.00 4.95
1545 1699 0.474184 ATTAGCAATCGGACAGGGGG 59.526 55.000 0.00 0.00 0.00 5.40
1553 1707 1.155889 TATGGCGCATTAGCAATCGG 58.844 50.000 10.83 0.00 42.27 4.18
1578 1732 2.986479 GCCGTATTTTGGAGCAAAACTG 59.014 45.455 0.00 0.00 44.40 3.16
1580 1734 2.986479 CAGCCGTATTTTGGAGCAAAAC 59.014 45.455 0.00 0.00 44.40 2.43
1581 1735 2.625790 ACAGCCGTATTTTGGAGCAAAA 59.374 40.909 0.00 0.00 45.41 2.44
1582 1736 2.235016 ACAGCCGTATTTTGGAGCAAA 58.765 42.857 0.00 0.00 0.00 3.68
1614 1768 0.108804 ATAGTCAACTCACGCCGTGG 60.109 55.000 18.32 10.62 33.87 4.94
1651 1805 1.743252 GCACACAGCCTAGCACTCC 60.743 63.158 0.00 0.00 37.23 3.85
1678 1832 9.456147 GCAGAAACTGGTAGAGATAGATAGATA 57.544 37.037 0.00 0.00 31.21 1.98
1679 1833 7.396055 GGCAGAAACTGGTAGAGATAGATAGAT 59.604 40.741 0.00 0.00 31.21 1.98
1725 1879 3.920412 GGAAGCATAAACAAAAGAAGGCG 59.080 43.478 0.00 0.00 0.00 5.52
1774 1928 4.944619 TCATAGTGCTAGATCCAGTTGG 57.055 45.455 0.00 0.00 0.00 3.77
1909 2066 3.303495 CGCTGTGAACTGAACCGTATAAG 59.697 47.826 0.00 0.00 0.00 1.73
1930 2087 2.886862 AATCAGAGGACTGCTCATCG 57.113 50.000 0.00 0.00 43.17 3.84
1956 2113 5.856455 ACAAGAAGAGTGTTTTTCGTTGTTG 59.144 36.000 0.00 0.00 29.09 3.33
1958 2115 5.622770 ACAAGAAGAGTGTTTTTCGTTGT 57.377 34.783 0.00 0.00 0.00 3.32
1959 2116 7.696453 ACATTACAAGAAGAGTGTTTTTCGTTG 59.304 33.333 0.00 0.00 0.00 4.10
1960 2117 7.696453 CACATTACAAGAAGAGTGTTTTTCGTT 59.304 33.333 0.00 0.00 0.00 3.85
1961 2118 7.148306 ACACATTACAAGAAGAGTGTTTTTCGT 60.148 33.333 0.00 0.00 36.91 3.85
1962 2119 7.186804 ACACATTACAAGAAGAGTGTTTTTCG 58.813 34.615 0.00 0.00 36.91 3.46
1963 2120 9.434559 GTACACATTACAAGAAGAGTGTTTTTC 57.565 33.333 0.00 0.00 40.33 2.29
1964 2121 9.174166 AGTACACATTACAAGAAGAGTGTTTTT 57.826 29.630 0.00 0.00 40.33 1.94
1965 2122 8.612619 CAGTACACATTACAAGAAGAGTGTTTT 58.387 33.333 0.00 0.00 40.33 2.43
1966 2123 7.769044 ACAGTACACATTACAAGAAGAGTGTTT 59.231 33.333 0.00 0.00 40.33 2.83
1967 2124 7.272978 ACAGTACACATTACAAGAAGAGTGTT 58.727 34.615 0.00 0.00 40.33 3.32
1968 2125 6.817184 ACAGTACACATTACAAGAAGAGTGT 58.183 36.000 0.00 0.00 42.25 3.55
1969 2126 8.082852 ACTACAGTACACATTACAAGAAGAGTG 58.917 37.037 0.00 0.00 0.00 3.51
1976 2133 9.203421 TGAATGAACTACAGTACACATTACAAG 57.797 33.333 0.00 0.00 31.79 3.16
1983 2140 6.605471 AGGATGAATGAACTACAGTACACA 57.395 37.500 0.00 0.00 0.00 3.72
1984 2141 7.148407 CCAAAGGATGAATGAACTACAGTACAC 60.148 40.741 0.00 0.00 0.00 2.90
2008 2169 5.836024 AGTAAGTAAATGAGACCCAACCA 57.164 39.130 0.00 0.00 0.00 3.67
2012 2173 7.942341 ACATTTCAAGTAAGTAAATGAGACCCA 59.058 33.333 12.51 0.00 41.14 4.51
2013 2174 8.336801 ACATTTCAAGTAAGTAAATGAGACCC 57.663 34.615 12.51 0.00 41.14 4.46
2014 2175 9.827411 GAACATTTCAAGTAAGTAAATGAGACC 57.173 33.333 12.51 0.00 41.14 3.85
2018 2179 9.677567 GCAAGAACATTTCAAGTAAGTAAATGA 57.322 29.630 12.51 0.00 41.14 2.57
2019 2180 9.462174 TGCAAGAACATTTCAAGTAAGTAAATG 57.538 29.630 0.00 0.00 43.18 2.32
2021 2182 9.677567 GATGCAAGAACATTTCAAGTAAGTAAA 57.322 29.630 0.00 0.00 0.00 2.01
2022 2183 9.066892 AGATGCAAGAACATTTCAAGTAAGTAA 57.933 29.630 0.00 0.00 0.00 2.24
2023 2184 8.621532 AGATGCAAGAACATTTCAAGTAAGTA 57.378 30.769 0.00 0.00 0.00 2.24
2024 2185 7.516198 AGATGCAAGAACATTTCAAGTAAGT 57.484 32.000 0.00 0.00 0.00 2.24
2025 2186 8.807667 AAAGATGCAAGAACATTTCAAGTAAG 57.192 30.769 0.00 0.00 0.00 2.34
2156 2344 3.117663 AGGGGAGAAAACAAGTGCTACAA 60.118 43.478 0.00 0.00 0.00 2.41
2157 2345 2.441750 AGGGGAGAAAACAAGTGCTACA 59.558 45.455 0.00 0.00 0.00 2.74
2158 2346 3.075148 GAGGGGAGAAAACAAGTGCTAC 58.925 50.000 0.00 0.00 0.00 3.58
2159 2347 2.979678 AGAGGGGAGAAAACAAGTGCTA 59.020 45.455 0.00 0.00 0.00 3.49
2239 2429 1.528586 GCGTAGTGGCATCTGCATTAG 59.471 52.381 4.33 0.00 44.36 1.73
2243 2433 2.125147 GGCGTAGTGGCATCTGCA 60.125 61.111 4.33 0.00 44.36 4.41
2276 2466 3.385193 ACTTTAACCAAGTTGCCATGC 57.615 42.857 0.00 0.00 43.89 4.06
2400 2590 2.821969 GACCATCAACTTGCAGTGGATT 59.178 45.455 12.09 0.00 36.77 3.01
2401 2591 2.040813 AGACCATCAACTTGCAGTGGAT 59.959 45.455 12.09 4.48 39.42 3.41
2402 2592 1.421268 AGACCATCAACTTGCAGTGGA 59.579 47.619 12.09 2.57 31.69 4.02
2403 2593 1.808945 GAGACCATCAACTTGCAGTGG 59.191 52.381 0.00 6.28 36.06 4.00
2404 2594 2.740981 GAGAGACCATCAACTTGCAGTG 59.259 50.000 0.00 0.00 0.00 3.66
2405 2595 2.289945 GGAGAGACCATCAACTTGCAGT 60.290 50.000 0.00 0.00 38.79 4.40
2406 2596 2.289882 TGGAGAGACCATCAACTTGCAG 60.290 50.000 0.00 0.00 44.64 4.41
2407 2597 1.699083 TGGAGAGACCATCAACTTGCA 59.301 47.619 0.00 0.00 44.64 4.08
2408 2598 2.479566 TGGAGAGACCATCAACTTGC 57.520 50.000 0.00 0.00 44.64 4.01
2418 2608 2.016096 GCTGGATTGCTTGGAGAGACC 61.016 57.143 0.00 0.00 39.54 3.85
2419 2609 1.339438 TGCTGGATTGCTTGGAGAGAC 60.339 52.381 0.00 0.00 0.00 3.36
2420 2610 0.986527 TGCTGGATTGCTTGGAGAGA 59.013 50.000 0.00 0.00 0.00 3.10
2421 2611 2.054232 ATGCTGGATTGCTTGGAGAG 57.946 50.000 0.00 0.00 0.00 3.20
2422 2612 2.025605 AGAATGCTGGATTGCTTGGAGA 60.026 45.455 0.00 0.00 0.00 3.71
2423 2613 2.376109 AGAATGCTGGATTGCTTGGAG 58.624 47.619 0.00 0.00 0.00 3.86
2424 2614 2.519771 AGAATGCTGGATTGCTTGGA 57.480 45.000 0.00 0.00 0.00 3.53
2425 2615 3.604875 AAAGAATGCTGGATTGCTTGG 57.395 42.857 0.00 0.00 0.00 3.61
2426 2616 4.817517 AGAAAAGAATGCTGGATTGCTTG 58.182 39.130 0.00 0.00 0.00 4.01
2427 2617 4.771054 AGAGAAAAGAATGCTGGATTGCTT 59.229 37.500 0.00 0.55 0.00 3.91
2428 2618 4.158025 CAGAGAAAAGAATGCTGGATTGCT 59.842 41.667 0.00 0.00 0.00 3.91
2429 2619 4.157289 TCAGAGAAAAGAATGCTGGATTGC 59.843 41.667 0.00 0.00 0.00 3.56
2430 2620 5.892160 TCAGAGAAAAGAATGCTGGATTG 57.108 39.130 0.00 0.00 0.00 2.67
2494 2684 1.767289 CTCTGCTTTGTGCTGCTTTG 58.233 50.000 0.00 0.00 43.37 2.77
2495 2685 0.031721 GCTCTGCTTTGTGCTGCTTT 59.968 50.000 0.00 0.00 43.37 3.51
2496 2686 0.822532 AGCTCTGCTTTGTGCTGCTT 60.823 50.000 0.00 0.00 43.37 3.91
2497 2687 1.228184 AGCTCTGCTTTGTGCTGCT 60.228 52.632 0.00 0.00 43.37 4.24
2498 2688 3.352524 AGCTCTGCTTTGTGCTGC 58.647 55.556 0.00 0.00 43.37 5.25
2507 2697 1.296068 GTCAGGCTCAAGCTCTGCT 59.704 57.895 12.76 0.00 42.56 4.24
2508 2698 0.392729 ATGTCAGGCTCAAGCTCTGC 60.393 55.000 12.76 9.80 41.70 4.26
2509 2699 2.975732 TATGTCAGGCTCAAGCTCTG 57.024 50.000 11.84 11.84 41.70 3.35
2510 2700 2.770802 ACATATGTCAGGCTCAAGCTCT 59.229 45.455 1.41 0.00 41.70 4.09
2642 2834 7.520614 GCTGGCCACTAATCATTAGTTCATTAC 60.521 40.741 7.38 0.00 43.70 1.89
2644 2836 5.300286 GCTGGCCACTAATCATTAGTTCATT 59.700 40.000 7.38 0.00 43.70 2.57
2645 2837 4.823989 GCTGGCCACTAATCATTAGTTCAT 59.176 41.667 7.38 0.00 43.70 2.57
2646 2838 4.199310 GCTGGCCACTAATCATTAGTTCA 58.801 43.478 7.38 6.17 43.70 3.18
2647 2839 3.565902 GGCTGGCCACTAATCATTAGTTC 59.434 47.826 7.38 3.08 43.70 3.01
2648 2840 3.555966 GGCTGGCCACTAATCATTAGTT 58.444 45.455 7.38 0.00 43.70 2.24
2649 2841 2.485479 CGGCTGGCCACTAATCATTAGT 60.485 50.000 0.00 4.03 46.96 2.24
2650 2842 2.146342 CGGCTGGCCACTAATCATTAG 58.854 52.381 0.00 2.58 39.18 1.73
2652 2844 0.546122 TCGGCTGGCCACTAATCATT 59.454 50.000 0.00 0.00 35.37 2.57
2655 2955 0.886490 CCATCGGCTGGCCACTAATC 60.886 60.000 0.00 0.00 38.47 1.75
2669 2969 0.233074 GACACGTATGCATGCCATCG 59.767 55.000 16.68 17.96 35.34 3.84
2673 2973 0.744414 ACAGGACACGTATGCATGCC 60.744 55.000 16.68 0.00 0.00 4.40
2765 3065 5.303589 AGTGGCAGTTAAACTAGACTGTGTA 59.696 40.000 10.13 0.00 43.94 2.90
2766 3066 4.101119 AGTGGCAGTTAAACTAGACTGTGT 59.899 41.667 10.13 0.00 43.94 3.72
2767 3067 4.449068 CAGTGGCAGTTAAACTAGACTGTG 59.551 45.833 10.13 0.00 43.94 3.66
2768 3068 4.632153 CAGTGGCAGTTAAACTAGACTGT 58.368 43.478 10.13 0.00 43.94 3.55
2812 3112 4.021368 ACCTCCACTACATCTACAACACAC 60.021 45.833 0.00 0.00 0.00 3.82
2821 3121 4.160626 GCTGTAAAGACCTCCACTACATCT 59.839 45.833 0.00 0.00 0.00 2.90
2884 3184 2.286713 CCATTGACTAGTCGCTCTCTCG 60.287 54.545 17.85 0.99 0.00 4.04
2907 3207 2.071844 ATATCGACCGTCACCCGCAG 62.072 60.000 0.00 0.00 34.38 5.18
2909 3209 1.660575 CATATCGACCGTCACCCGC 60.661 63.158 0.00 0.00 34.38 6.13
2910 3210 0.101759 AACATATCGACCGTCACCCG 59.898 55.000 0.00 0.00 0.00 5.28
2933 3233 3.280295 TGTTAACAGTCTCCCGCAAAAA 58.720 40.909 3.59 0.00 0.00 1.94
2934 3234 2.920524 TGTTAACAGTCTCCCGCAAAA 58.079 42.857 3.59 0.00 0.00 2.44
2935 3235 2.623878 TGTTAACAGTCTCCCGCAAA 57.376 45.000 3.59 0.00 0.00 3.68
2936 3236 2.851263 ATGTTAACAGTCTCCCGCAA 57.149 45.000 14.65 0.00 0.00 4.85
2937 3237 3.965379 TTATGTTAACAGTCTCCCGCA 57.035 42.857 14.65 0.00 0.00 5.69
2938 3238 4.694339 AGATTATGTTAACAGTCTCCCGC 58.306 43.478 14.65 0.00 0.00 6.13
2939 3239 5.902681 TGAGATTATGTTAACAGTCTCCCG 58.097 41.667 27.80 0.00 34.61 5.14
2941 3241 8.200792 ACATCTGAGATTATGTTAACAGTCTCC 58.799 37.037 27.80 18.22 32.43 3.71
2943 3243 9.950496 AAACATCTGAGATTATGTTAACAGTCT 57.050 29.630 14.65 15.67 43.66 3.24
2944 3244 9.979270 CAAACATCTGAGATTATGTTAACAGTC 57.021 33.333 14.65 11.50 43.66 3.51
2974 3281 9.350357 CAGGAAAATGTCAAAACTATCAGAATG 57.650 33.333 0.00 0.00 37.54 2.67
2979 3287 6.716628 AGCTCAGGAAAATGTCAAAACTATCA 59.283 34.615 0.00 0.00 0.00 2.15
3032 3364 2.437413 CTCCTACAAAGCTTTCACCCC 58.563 52.381 9.23 0.00 0.00 4.95
3035 3367 2.143925 ACGCTCCTACAAAGCTTTCAC 58.856 47.619 9.23 0.00 37.62 3.18
3036 3368 2.543777 ACGCTCCTACAAAGCTTTCA 57.456 45.000 9.23 0.00 37.62 2.69
3037 3369 3.371285 CCTAACGCTCCTACAAAGCTTTC 59.629 47.826 9.23 0.00 37.62 2.62
3041 3373 1.007580 GCCTAACGCTCCTACAAAGC 58.992 55.000 0.00 0.00 36.38 3.51
3108 3451 9.173021 CACTCTTTGGTAACCATGATAATGTTA 57.827 33.333 0.00 0.00 31.53 2.41
3109 3452 7.669722 ACACTCTTTGGTAACCATGATAATGTT 59.330 33.333 0.00 0.00 31.53 2.71
3110 3453 7.175104 ACACTCTTTGGTAACCATGATAATGT 58.825 34.615 0.00 0.00 31.53 2.71
3111 3454 7.630242 ACACTCTTTGGTAACCATGATAATG 57.370 36.000 0.00 0.00 31.53 1.90
3112 3455 8.522830 CAAACACTCTTTGGTAACCATGATAAT 58.477 33.333 0.00 0.00 31.53 1.28
3116 3460 5.067153 CACAAACACTCTTTGGTAACCATGA 59.933 40.000 0.00 0.00 31.53 3.07
3122 3466 5.708230 AGAACACACAAACACTCTTTGGTAA 59.292 36.000 0.00 0.00 33.92 2.85
3179 3523 2.138320 GACCACCGATCTGTGCATATG 58.862 52.381 11.47 0.00 34.85 1.78
3186 3530 1.178276 GTCAGAGACCACCGATCTGT 58.822 55.000 1.75 0.00 41.01 3.41
3232 3576 5.008613 GTGCAAGTAGAATTTGACTTCACCA 59.991 40.000 15.59 8.08 33.60 4.17
3243 3587 4.516698 CACTGACCTTGTGCAAGTAGAATT 59.483 41.667 10.56 0.00 36.72 2.17
3365 3710 4.639310 TCTGAAGAACTACGTATCCAGGAC 59.361 45.833 0.00 0.00 0.00 3.85
3392 3738 0.796312 CCCCGACAGTTGAACATTCG 59.204 55.000 10.51 10.51 0.00 3.34
3591 3938 5.957842 TCGATTTGTTTGGTTAGATTGCT 57.042 34.783 0.00 0.00 0.00 3.91
3826 4181 9.681062 AGGCAAGTTTTAAATAGCTAACTGATA 57.319 29.630 0.00 0.00 31.64 2.15
3867 4222 6.825213 TGAATTATTGTCATGGGAGTCTGAAG 59.175 38.462 0.00 0.00 0.00 3.02
3896 4251 4.637483 TCTTTCCTTCAGCAGTGTTTTG 57.363 40.909 0.00 0.00 0.00 2.44
3969 4324 5.591099 ACACTGAAGTAACAAAATGCCAAG 58.409 37.500 0.00 0.00 0.00 3.61
3982 4337 6.816640 GCACTGGTGATTATAACACTGAAGTA 59.183 38.462 4.79 0.00 38.20 2.24
3985 4340 5.643348 CAGCACTGGTGATTATAACACTGAA 59.357 40.000 1.74 4.64 38.20 3.02
3986 4341 5.178061 CAGCACTGGTGATTATAACACTGA 58.822 41.667 1.74 5.13 38.20 3.41
3987 4342 4.201851 GCAGCACTGGTGATTATAACACTG 60.202 45.833 12.50 10.98 38.20 3.66
4072 4427 9.297586 CAGACATAAATTTTCAGTCATGATTGG 57.702 33.333 17.19 1.97 34.73 3.16
4075 4430 9.017509 ACACAGACATAAATTTTCAGTCATGAT 57.982 29.630 18.00 0.00 34.73 2.45
4144 4499 4.081365 GCCTTAAGGACTAGCTTCTGAAGT 60.081 45.833 26.21 8.18 37.39 3.01
4190 4545 4.019321 CCCGGGTAAATCATCTATGTGGAT 60.019 45.833 14.18 0.00 0.00 3.41
4210 4565 1.533033 AAACCCTTTTGCTCCCCCG 60.533 57.895 0.00 0.00 0.00 5.73
4219 4574 7.872113 TTTTGCACATATTTCAAACCCTTTT 57.128 28.000 0.00 0.00 30.45 2.27
4311 4666 4.202357 CCATATCTTCGGTCATTCCAAGGA 60.202 45.833 0.00 0.00 35.57 3.36
4324 4679 4.770795 AGTTCCCTTTGTCCATATCTTCG 58.229 43.478 0.00 0.00 0.00 3.79
4402 4757 3.122297 GCTCTGGAGAACAATGATCGAG 58.878 50.000 1.35 0.00 0.00 4.04
4435 4790 1.903183 AGCTCCTCAGACCAAGGTAAC 59.097 52.381 0.00 0.00 35.29 2.50
4492 4847 3.027412 TGCAGGATCTACAGAGGTCTTC 58.973 50.000 0.00 0.00 32.85 2.87
4498 4853 5.931146 GGATACATTTGCAGGATCTACAGAG 59.069 44.000 0.00 0.00 0.00 3.35
4504 4859 3.461085 ACCAGGATACATTTGCAGGATCT 59.539 43.478 0.00 0.00 41.41 2.75
4588 4943 0.252103 AGTCCTTGGGAGCTACCGAA 60.252 55.000 11.35 5.07 40.11 4.30
4657 5012 5.139727 CCCTTGGATTTGATAGCAACCATA 58.860 41.667 4.11 0.00 32.25 2.74
4867 5222 8.281212 ACCCAACTAATATAGCAACTTTCAAG 57.719 34.615 0.00 0.00 0.00 3.02
5010 5365 7.405292 TCTCTGAACAAGATTATGGACCAAAT 58.595 34.615 0.00 0.00 33.29 2.32
5011 5366 6.778821 TCTCTGAACAAGATTATGGACCAAA 58.221 36.000 0.00 0.00 33.29 3.28
5414 5771 4.019792 TCAAGTCTGCTTCCATGCTTAA 57.980 40.909 0.00 0.00 31.49 1.85
5442 5799 2.409948 AGGTGAGATAGCAAACAGGC 57.590 50.000 0.00 0.00 0.00 4.85
5448 5805 7.857456 TGGTCTTATAAAAGGTGAGATAGCAA 58.143 34.615 0.00 0.00 33.22 3.91
5461 5818 7.691213 TCAGGTGTGGTTATGGTCTTATAAAA 58.309 34.615 0.00 0.00 0.00 1.52
5466 5823 4.780554 TGATCAGGTGTGGTTATGGTCTTA 59.219 41.667 0.00 0.00 0.00 2.10
5479 5836 4.660168 AGAAGAAGCAAATGATCAGGTGT 58.340 39.130 0.09 0.00 0.00 4.16
5546 5904 2.904697 TGACATCTATCAGGCTGCAG 57.095 50.000 10.11 10.11 0.00 4.41
5550 5908 3.710677 AGCTTCTTGACATCTATCAGGCT 59.289 43.478 0.00 0.00 0.00 4.58
5594 5952 3.102985 CGGTCGTTTTGTGTGGCA 58.897 55.556 0.00 0.00 0.00 4.92
5684 6042 3.649277 CTCTCCGCCGTCAGTTGGG 62.649 68.421 0.00 0.00 0.00 4.12
5759 6117 1.662044 CAGCTTGTTTGGGTGCCTC 59.338 57.895 0.00 0.00 0.00 4.70
5851 6209 2.555757 ACAACTTGATCCTTGAAGCTGC 59.444 45.455 0.00 0.00 0.00 5.25
5891 6249 2.887152 GTTCCTGCCAACAACTTGATCT 59.113 45.455 0.00 0.00 0.00 2.75
5894 6252 2.023673 CTGTTCCTGCCAACAACTTGA 58.976 47.619 0.00 0.00 35.83 3.02
5897 6255 0.106519 AGCTGTTCCTGCCAACAACT 60.107 50.000 0.00 0.00 35.83 3.16
5909 6267 2.550180 GAGTTGGTCCTTGAAGCTGTTC 59.450 50.000 0.00 0.00 0.00 3.18
5978 6336 3.951769 ATGCCCCTTGCTGCTCCAC 62.952 63.158 0.00 0.00 42.00 4.02
6056 6414 1.578206 GCTTCACTTCCGTGGGCTTC 61.578 60.000 0.00 0.00 41.53 3.86
6259 6617 0.324943 GCTGCTTACAGTCCTCCCAA 59.675 55.000 0.00 0.00 46.30 4.12
6260 6618 0.545309 AGCTGCTTACAGTCCTCCCA 60.545 55.000 0.00 0.00 46.30 4.37
6314 6675 1.328430 ACTGGTAAGCTACGGGCCTC 61.328 60.000 0.84 0.00 43.05 4.70
6345 6706 5.902431 ACCAAGCATACTAGATCTTTCCTCT 59.098 40.000 0.00 0.00 0.00 3.69
6359 6720 6.150140 ACATTTCAGAGAAGAACCAAGCATAC 59.850 38.462 0.00 0.00 0.00 2.39
6362 6724 4.464008 ACATTTCAGAGAAGAACCAAGCA 58.536 39.130 0.00 0.00 0.00 3.91
6364 6726 8.786898 TCATAAACATTTCAGAGAAGAACCAAG 58.213 33.333 0.00 0.00 0.00 3.61
6395 6757 5.299782 TGTTCGCACATACCCTTTTAACTTT 59.700 36.000 0.00 0.00 0.00 2.66
6399 6761 4.752661 GTGTTCGCACATACCCTTTTAA 57.247 40.909 0.00 0.00 46.85 1.52
6422 6784 1.143305 CTGCTCTGGACACAAGAACG 58.857 55.000 0.00 0.00 0.00 3.95
6428 6790 2.936919 AACATTCTGCTCTGGACACA 57.063 45.000 0.00 0.00 0.00 3.72
6438 7068 3.762779 CCGAATCCTGAAAACATTCTGC 58.237 45.455 0.00 0.00 0.00 4.26
6485 7115 9.119418 TGCAGAAAGATTGATCGGAAAATATAA 57.881 29.630 0.00 0.00 0.00 0.98
6486 7116 8.675705 TGCAGAAAGATTGATCGGAAAATATA 57.324 30.769 0.00 0.00 0.00 0.86
6487 7117 7.572523 TGCAGAAAGATTGATCGGAAAATAT 57.427 32.000 0.00 0.00 0.00 1.28
6496 7126 5.301298 AGGGCTAAATGCAGAAAGATTGATC 59.699 40.000 0.00 0.00 45.15 2.92
6522 7152 7.594015 CACTCTTTCCTGAATTCAAGTTTGATG 59.406 37.037 9.88 0.00 37.00 3.07
6524 7154 6.039717 CCACTCTTTCCTGAATTCAAGTTTGA 59.960 38.462 9.88 5.03 34.92 2.69
6528 7167 3.823304 GCCACTCTTTCCTGAATTCAAGT 59.177 43.478 9.88 6.02 0.00 3.16
6549 7188 4.744631 ACCTGAATTTTGATTGTGTTTCGC 59.255 37.500 0.00 0.00 0.00 4.70
6571 7212 6.693545 GCTGCGTAGTAAGATCCATATATCAC 59.306 42.308 1.53 0.00 0.00 3.06
6622 7263 5.507077 TGATTTGACAAAACTAGTCGCAAC 58.493 37.500 4.41 0.00 38.83 4.17
6629 7270 9.330063 TCTGCCTATATGATTTGACAAAACTAG 57.670 33.333 4.41 1.15 0.00 2.57
6713 7360 2.031120 CATGGAACCTGTGTTGGTGTT 58.969 47.619 0.00 0.00 40.73 3.32
6714 7361 1.691196 CATGGAACCTGTGTTGGTGT 58.309 50.000 0.00 0.00 40.73 4.16
6715 7362 0.314935 GCATGGAACCTGTGTTGGTG 59.685 55.000 0.00 0.00 40.73 4.17
6716 7363 0.827507 GGCATGGAACCTGTGTTGGT 60.828 55.000 0.00 0.00 43.11 3.67
6717 7364 0.827089 TGGCATGGAACCTGTGTTGG 60.827 55.000 0.00 0.00 33.97 3.77
6718 7365 0.314935 GTGGCATGGAACCTGTGTTG 59.685 55.000 0.00 0.00 33.97 3.33
6883 7534 2.086869 TCTGCTTGCAGGCTGATTTAC 58.913 47.619 23.46 0.00 35.75 2.01
6915 7566 1.146263 GGATGGCCCAGACTAACGG 59.854 63.158 0.00 0.00 34.14 4.44
6938 7589 4.961099 GGGGGACACTTTGTAGTATCTAGT 59.039 45.833 0.00 0.00 31.96 2.57
6944 7595 0.609662 GCGGGGGACACTTTGTAGTA 59.390 55.000 0.00 0.00 31.96 1.82
6955 7607 2.743538 GTAACAACGGCGGGGGAC 60.744 66.667 13.24 1.86 0.00 4.46
6965 7617 7.548097 TCTCTGTTCCTCATATCTGTAACAAC 58.452 38.462 0.00 0.00 0.00 3.32
6978 7630 5.305386 TCAAATGAACTCTCTCTGTTCCTCA 59.695 40.000 0.00 0.00 42.04 3.86
7000 7656 6.084326 TCTACGTGCATTATATTCTGCTCA 57.916 37.500 0.00 0.00 39.16 4.26
7037 7716 9.780186 AGGTAATAACAAAGCCTGATATTACTC 57.220 33.333 22.35 16.80 46.01 2.59
7042 7721 7.561356 AGCAAAGGTAATAACAAAGCCTGATAT 59.439 33.333 0.00 0.00 0.00 1.63
7043 7722 6.889722 AGCAAAGGTAATAACAAAGCCTGATA 59.110 34.615 0.00 0.00 0.00 2.15
7044 7723 5.716703 AGCAAAGGTAATAACAAAGCCTGAT 59.283 36.000 0.00 0.00 0.00 2.90
7047 7726 4.321974 GCAGCAAAGGTAATAACAAAGCCT 60.322 41.667 0.00 0.00 0.00 4.58
7049 7728 4.385748 GTGCAGCAAAGGTAATAACAAAGC 59.614 41.667 0.00 0.00 0.00 3.51
7050 7729 5.527951 TGTGCAGCAAAGGTAATAACAAAG 58.472 37.500 0.00 0.00 0.00 2.77
7051 7730 5.508825 CCTGTGCAGCAAAGGTAATAACAAA 60.509 40.000 22.54 0.00 34.30 2.83
7052 7731 4.022416 CCTGTGCAGCAAAGGTAATAACAA 60.022 41.667 22.54 0.00 34.30 2.83
7053 7732 3.505680 CCTGTGCAGCAAAGGTAATAACA 59.494 43.478 22.54 0.00 34.30 2.41
7054 7733 3.756434 TCCTGTGCAGCAAAGGTAATAAC 59.244 43.478 28.27 0.00 39.74 1.89
7055 7734 4.009675 CTCCTGTGCAGCAAAGGTAATAA 58.990 43.478 28.27 10.30 39.74 1.40
7056 7735 3.609853 CTCCTGTGCAGCAAAGGTAATA 58.390 45.455 28.27 10.67 39.74 0.98
7057 7736 2.440409 CTCCTGTGCAGCAAAGGTAAT 58.560 47.619 28.27 0.00 39.74 1.89
7058 7737 1.545428 CCTCCTGTGCAGCAAAGGTAA 60.545 52.381 28.27 11.73 39.74 2.85



Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.