Multiple sequence alignment - TraesCS5A01G223800
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G223800 | chr5A | 100.000 | 7123 | 0 | 0 | 1 | 7123 | 439545043 | 439552165 | 0.000000e+00 | 13154.0 |
1 | TraesCS5A01G223800 | chr5B | 92.321 | 4076 | 206 | 40 | 2428 | 6445 | 397830024 | 397834050 | 0.000000e+00 | 5694.0 |
2 | TraesCS5A01G223800 | chr5B | 85.645 | 2466 | 155 | 82 | 23 | 2406 | 397827684 | 397830032 | 0.000000e+00 | 2409.0 |
3 | TraesCS5A01G223800 | chr5B | 92.635 | 611 | 42 | 3 | 3078 | 3685 | 566408095 | 566407485 | 0.000000e+00 | 876.0 |
4 | TraesCS5A01G223800 | chr5B | 89.571 | 652 | 37 | 17 | 6498 | 7123 | 397834340 | 397834986 | 0.000000e+00 | 798.0 |
5 | TraesCS5A01G223800 | chr5D | 93.988 | 3393 | 150 | 23 | 3041 | 6423 | 338652972 | 338656320 | 0.000000e+00 | 5086.0 |
6 | TraesCS5A01G223800 | chr5D | 83.161 | 2411 | 147 | 87 | 76 | 2406 | 338650009 | 338652240 | 0.000000e+00 | 1964.0 |
7 | TraesCS5A01G223800 | chr5D | 87.660 | 705 | 29 | 26 | 6440 | 7123 | 338656455 | 338657122 | 0.000000e+00 | 767.0 |
8 | TraesCS5A01G223800 | chr5D | 88.571 | 385 | 30 | 7 | 2640 | 3015 | 338652533 | 338652912 | 8.420000e-124 | 455.0 |
9 | TraesCS5A01G223800 | chr5D | 89.862 | 217 | 2 | 3 | 2428 | 2642 | 338652232 | 338652430 | 1.970000e-65 | 261.0 |
10 | TraesCS5A01G223800 | chr5D | 92.683 | 82 | 1 | 3 | 3 | 83 | 338649910 | 338649987 | 5.840000e-21 | 113.0 |
11 | TraesCS5A01G223800 | chr2B | 92.707 | 617 | 42 | 3 | 3072 | 3685 | 247552085 | 247552701 | 0.000000e+00 | 887.0 |
12 | TraesCS5A01G223800 | chr2B | 92.244 | 606 | 44 | 3 | 3078 | 3680 | 281533461 | 281532856 | 0.000000e+00 | 856.0 |
13 | TraesCS5A01G223800 | chr2B | 90.762 | 617 | 54 | 3 | 3072 | 3685 | 269879445 | 269880061 | 0.000000e+00 | 821.0 |
14 | TraesCS5A01G223800 | chr3B | 92.308 | 611 | 44 | 3 | 3078 | 3685 | 738243286 | 738243896 | 0.000000e+00 | 865.0 |
15 | TraesCS5A01G223800 | chr4A | 92.144 | 611 | 44 | 4 | 3078 | 3685 | 552227390 | 552226781 | 0.000000e+00 | 859.0 |
16 | TraesCS5A01G223800 | chr2A | 91.896 | 617 | 47 | 3 | 3072 | 3685 | 591090982 | 591091598 | 0.000000e+00 | 859.0 |
17 | TraesCS5A01G223800 | chr6B | 91.980 | 611 | 46 | 3 | 3072 | 3679 | 154308773 | 154309383 | 0.000000e+00 | 854.0 |
18 | TraesCS5A01G223800 | chr6B | 86.559 | 186 | 8 | 6 | 2515 | 2691 | 178026831 | 178026654 | 9.430000e-44 | 189.0 |
19 | TraesCS5A01G223800 | chr6B | 89.231 | 130 | 5 | 3 | 2515 | 2635 | 559484698 | 559484827 | 3.440000e-33 | 154.0 |
20 | TraesCS5A01G223800 | chr6B | 80.473 | 169 | 25 | 6 | 2865 | 3025 | 178023988 | 178023820 | 9.700000e-24 | 122.0 |
21 | TraesCS5A01G223800 | chr1D | 80.952 | 105 | 20 | 0 | 6791 | 6895 | 291842220 | 291842116 | 4.580000e-12 | 84.2 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS5A01G223800 | chr5A | 439545043 | 439552165 | 7122 | False | 13154 | 13154 | 100.000000 | 1 | 7123 | 1 | chr5A.!!$F1 | 7122 |
1 | TraesCS5A01G223800 | chr5B | 397827684 | 397834986 | 7302 | False | 2967 | 5694 | 89.179000 | 23 | 7123 | 3 | chr5B.!!$F1 | 7100 |
2 | TraesCS5A01G223800 | chr5B | 566407485 | 566408095 | 610 | True | 876 | 876 | 92.635000 | 3078 | 3685 | 1 | chr5B.!!$R1 | 607 |
3 | TraesCS5A01G223800 | chr5D | 338649910 | 338657122 | 7212 | False | 1441 | 5086 | 89.320833 | 3 | 7123 | 6 | chr5D.!!$F1 | 7120 |
4 | TraesCS5A01G223800 | chr2B | 247552085 | 247552701 | 616 | False | 887 | 887 | 92.707000 | 3072 | 3685 | 1 | chr2B.!!$F1 | 613 |
5 | TraesCS5A01G223800 | chr2B | 281532856 | 281533461 | 605 | True | 856 | 856 | 92.244000 | 3078 | 3680 | 1 | chr2B.!!$R1 | 602 |
6 | TraesCS5A01G223800 | chr2B | 269879445 | 269880061 | 616 | False | 821 | 821 | 90.762000 | 3072 | 3685 | 1 | chr2B.!!$F2 | 613 |
7 | TraesCS5A01G223800 | chr3B | 738243286 | 738243896 | 610 | False | 865 | 865 | 92.308000 | 3078 | 3685 | 1 | chr3B.!!$F1 | 607 |
8 | TraesCS5A01G223800 | chr4A | 552226781 | 552227390 | 609 | True | 859 | 859 | 92.144000 | 3078 | 3685 | 1 | chr4A.!!$R1 | 607 |
9 | TraesCS5A01G223800 | chr2A | 591090982 | 591091598 | 616 | False | 859 | 859 | 91.896000 | 3072 | 3685 | 1 | chr2A.!!$F1 | 613 |
10 | TraesCS5A01G223800 | chr6B | 154308773 | 154309383 | 610 | False | 854 | 854 | 91.980000 | 3072 | 3679 | 1 | chr6B.!!$F1 | 607 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
468 | 547 | 0.108585 | AGGCTAGAGAGAGCGAGAGG | 59.891 | 60.0 | 0.00 | 0.00 | 43.83 | 3.69 | F |
1080 | 1190 | 0.037232 | GGTCAGTCACCCTCTTTCCG | 60.037 | 60.0 | 0.00 | 0.00 | 39.69 | 4.30 | F |
1368 | 1495 | 0.095935 | CGGTGAGATTCTTGCAAGCG | 59.904 | 55.0 | 21.99 | 12.48 | 0.00 | 4.68 | F |
1774 | 1928 | 0.101579 | GTGGCTCTCTACGCTTCTCC | 59.898 | 60.0 | 0.00 | 0.00 | 0.00 | 3.71 | F |
2673 | 2973 | 0.179048 | TGATTAGTGGCCAGCCGATG | 60.179 | 55.0 | 5.11 | 0.00 | 39.42 | 3.84 | F |
3037 | 3369 | 0.462937 | TATGCGTGATTTCGGGGGTG | 60.463 | 55.0 | 0.00 | 0.00 | 0.00 | 4.61 | F |
4588 | 4943 | 0.467290 | TTGAGCCGGCAGGAAAAACT | 60.467 | 50.0 | 31.54 | 3.33 | 41.02 | 2.66 | F |
4837 | 5192 | 0.382158 | TGCCGTCAGATAAGAGCTCG | 59.618 | 55.0 | 8.37 | 0.00 | 0.00 | 5.03 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1336 | 1457 | 0.108615 | CTCACCGGGAGCACTAACAG | 60.109 | 60.000 | 6.32 | 0.00 | 36.69 | 3.16 | R |
2495 | 2685 | 0.031721 | GCTCTGCTTTGTGCTGCTTT | 59.968 | 50.000 | 0.00 | 0.00 | 43.37 | 3.51 | R |
2910 | 3210 | 0.101759 | AACATATCGACCGTCACCCG | 59.898 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 | R |
3392 | 3738 | 0.796312 | CCCCGACAGTTGAACATTCG | 59.204 | 55.000 | 10.51 | 10.51 | 0.00 | 3.34 | R |
4588 | 4943 | 0.252103 | AGTCCTTGGGAGCTACCGAA | 60.252 | 55.000 | 11.35 | 5.07 | 40.11 | 4.30 | R |
4657 | 5012 | 5.139727 | CCCTTGGATTTGATAGCAACCATA | 58.860 | 41.667 | 4.11 | 0.00 | 32.25 | 2.74 | R |
5897 | 6255 | 0.106519 | AGCTGTTCCTGCCAACAACT | 60.107 | 50.000 | 0.00 | 0.00 | 35.83 | 3.16 | R |
6715 | 7362 | 0.314935 | GCATGGAACCTGTGTTGGTG | 59.685 | 55.000 | 0.00 | 0.00 | 40.73 | 4.17 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
95 | 99 | 2.047844 | CTCTCCACCACACAGGCG | 60.048 | 66.667 | 0.00 | 0.00 | 43.14 | 5.52 |
222 | 257 | 0.605589 | GTAAAGTTCTGCCGCACCCT | 60.606 | 55.000 | 0.00 | 0.00 | 0.00 | 4.34 |
224 | 259 | 3.883744 | AAGTTCTGCCGCACCCTCG | 62.884 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
262 | 297 | 1.739371 | CGGATAATTAGCCCGGCTAGC | 60.739 | 57.143 | 18.59 | 6.04 | 42.34 | 3.42 |
274 | 309 | 0.605589 | CGGCTAGCTAATCCTGGGAG | 59.394 | 60.000 | 15.72 | 0.00 | 0.00 | 4.30 |
275 | 310 | 0.323302 | GGCTAGCTAATCCTGGGAGC | 59.677 | 60.000 | 15.72 | 7.75 | 36.42 | 4.70 |
277 | 312 | 1.627834 | GCTAGCTAATCCTGGGAGCAT | 59.372 | 52.381 | 7.70 | 6.30 | 38.73 | 3.79 |
282 | 317 | 6.183361 | GCTAGCTAATCCTGGGAGCATATTAT | 60.183 | 42.308 | 7.70 | 0.87 | 38.73 | 1.28 |
285 | 320 | 6.673978 | AGCTAATCCTGGGAGCATATTATACA | 59.326 | 38.462 | 15.39 | 0.00 | 38.73 | 2.29 |
307 | 342 | 6.981722 | ACAATCAAACAGTGGAAGAAATACC | 58.018 | 36.000 | 0.00 | 0.00 | 0.00 | 2.73 |
377 | 449 | 4.411981 | AGCAGCAGCAGCAGGAGG | 62.412 | 66.667 | 12.92 | 0.00 | 45.49 | 4.30 |
379 | 451 | 2.125065 | CAGCAGCAGCAGGAGGAG | 60.125 | 66.667 | 3.17 | 0.00 | 45.49 | 3.69 |
380 | 452 | 4.098722 | AGCAGCAGCAGGAGGAGC | 62.099 | 66.667 | 3.17 | 0.00 | 45.49 | 4.70 |
381 | 453 | 4.405671 | GCAGCAGCAGGAGGAGCA | 62.406 | 66.667 | 0.00 | 0.00 | 41.58 | 4.26 |
382 | 454 | 2.125065 | CAGCAGCAGGAGGAGCAG | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 4.24 |
383 | 455 | 4.098722 | AGCAGCAGGAGGAGCAGC | 62.099 | 66.667 | 0.00 | 0.00 | 43.76 | 5.25 |
407 | 479 | 4.678622 | GGGGGCGAGTTTTTAACATATTG | 58.321 | 43.478 | 0.00 | 0.00 | 0.00 | 1.90 |
408 | 480 | 4.109766 | GGGGCGAGTTTTTAACATATTGC | 58.890 | 43.478 | 0.00 | 0.00 | 0.00 | 3.56 |
416 | 495 | 5.567534 | AGTTTTTAACATATTGCGCGTTGAG | 59.432 | 36.000 | 8.43 | 0.00 | 0.00 | 3.02 |
430 | 509 | 1.461127 | CGTTGAGGCGAAGGAAAAGAG | 59.539 | 52.381 | 0.00 | 0.00 | 0.00 | 2.85 |
462 | 541 | 3.031013 | AGAGGAAAAGGCTAGAGAGAGC | 58.969 | 50.000 | 0.00 | 0.00 | 42.05 | 4.09 |
468 | 547 | 0.108585 | AGGCTAGAGAGAGCGAGAGG | 59.891 | 60.000 | 0.00 | 0.00 | 43.83 | 3.69 |
486 | 568 | 2.295909 | GAGGGAGATACTGCTGCTACTG | 59.704 | 54.545 | 0.00 | 0.00 | 0.00 | 2.74 |
495 | 577 | 2.510238 | CTGCTACTGCGTCCTGCC | 60.510 | 66.667 | 0.00 | 0.00 | 45.60 | 4.85 |
496 | 578 | 4.082523 | TGCTACTGCGTCCTGCCC | 62.083 | 66.667 | 0.00 | 0.00 | 45.60 | 5.36 |
497 | 579 | 4.082523 | GCTACTGCGTCCTGCCCA | 62.083 | 66.667 | 0.00 | 0.00 | 45.60 | 5.36 |
498 | 580 | 2.125512 | CTACTGCGTCCTGCCCAC | 60.126 | 66.667 | 0.00 | 0.00 | 45.60 | 4.61 |
499 | 581 | 2.920384 | TACTGCGTCCTGCCCACA | 60.920 | 61.111 | 0.00 | 0.00 | 45.60 | 4.17 |
515 | 597 | 1.817941 | ACACCACACCACGTTGAGC | 60.818 | 57.895 | 0.00 | 0.00 | 0.00 | 4.26 |
533 | 619 | 1.429021 | CCATTGACATTGCGACGGG | 59.571 | 57.895 | 0.00 | 0.00 | 0.00 | 5.28 |
534 | 620 | 1.226379 | CATTGACATTGCGACGGGC | 60.226 | 57.895 | 0.00 | 0.00 | 43.96 | 6.13 |
587 | 677 | 4.869440 | CGGAGAGCAGGCAGAGCG | 62.869 | 72.222 | 0.00 | 0.00 | 37.01 | 5.03 |
589 | 679 | 4.447989 | GAGAGCAGGCAGAGCGCA | 62.448 | 66.667 | 11.47 | 0.00 | 45.17 | 6.09 |
590 | 680 | 4.454319 | AGAGCAGGCAGAGCGCAG | 62.454 | 66.667 | 11.47 | 0.00 | 45.17 | 5.18 |
629 | 722 | 5.567025 | GCCGAGGAGGAGTTAATAATACCAG | 60.567 | 48.000 | 0.00 | 0.00 | 45.00 | 4.00 |
647 | 740 | 2.362889 | CACCACCCCTTCCATGGC | 60.363 | 66.667 | 6.96 | 0.00 | 36.96 | 4.40 |
686 | 779 | 3.125376 | ATCATTGCCGCCTCCTCCC | 62.125 | 63.158 | 0.00 | 0.00 | 0.00 | 4.30 |
708 | 801 | 1.366319 | CCTCCCTCCATATCCCCTTG | 58.634 | 60.000 | 0.00 | 0.00 | 0.00 | 3.61 |
730 | 823 | 0.168788 | TAATTGCTGCTGCTGCGTTC | 59.831 | 50.000 | 23.38 | 3.14 | 43.34 | 3.95 |
758 | 851 | 1.832167 | CCACACCAACCCAACCCAG | 60.832 | 63.158 | 0.00 | 0.00 | 0.00 | 4.45 |
773 | 866 | 4.140599 | CAGCCGCGCCTCTCTCTT | 62.141 | 66.667 | 0.00 | 0.00 | 0.00 | 2.85 |
774 | 867 | 4.140599 | AGCCGCGCCTCTCTCTTG | 62.141 | 66.667 | 0.00 | 0.00 | 0.00 | 3.02 |
776 | 869 | 4.140599 | CCGCGCCTCTCTCTTGCT | 62.141 | 66.667 | 0.00 | 0.00 | 0.00 | 3.91 |
777 | 870 | 2.775856 | CCGCGCCTCTCTCTTGCTA | 61.776 | 63.158 | 0.00 | 0.00 | 0.00 | 3.49 |
778 | 871 | 1.587613 | CGCGCCTCTCTCTTGCTAC | 60.588 | 63.158 | 0.00 | 0.00 | 0.00 | 3.58 |
779 | 872 | 1.587613 | GCGCCTCTCTCTTGCTACG | 60.588 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
780 | 873 | 1.994507 | GCGCCTCTCTCTTGCTACGA | 61.995 | 60.000 | 0.00 | 0.00 | 0.00 | 3.43 |
800 | 893 | 3.710722 | CTCTTCCCCTGCTGCCGT | 61.711 | 66.667 | 0.00 | 0.00 | 0.00 | 5.68 |
814 | 912 | 3.118454 | CCGTTGCGTACTGCTGGG | 61.118 | 66.667 | 10.27 | 5.86 | 46.63 | 4.45 |
815 | 913 | 2.357034 | CGTTGCGTACTGCTGGGT | 60.357 | 61.111 | 10.27 | 0.00 | 46.63 | 4.51 |
899 | 997 | 3.573967 | GGAAAGTGCATGGGAAGAAGAAA | 59.426 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
900 | 998 | 4.321527 | GGAAAGTGCATGGGAAGAAGAAAG | 60.322 | 45.833 | 0.00 | 0.00 | 0.00 | 2.62 |
901 | 999 | 2.165998 | AGTGCATGGGAAGAAGAAAGC | 58.834 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
903 | 1001 | 1.888512 | TGCATGGGAAGAAGAAAGCAC | 59.111 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
905 | 1003 | 1.470098 | CATGGGAAGAAGAAAGCACCG | 59.530 | 52.381 | 0.00 | 0.00 | 0.00 | 4.94 |
906 | 1004 | 0.250727 | TGGGAAGAAGAAAGCACCGG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
907 | 1005 | 0.960861 | GGGAAGAAGAAAGCACCGGG | 60.961 | 60.000 | 6.32 | 0.00 | 0.00 | 5.73 |
909 | 1007 | 1.587043 | GAAGAAGAAAGCACCGGGCC | 61.587 | 60.000 | 6.32 | 0.00 | 46.50 | 5.80 |
927 | 1025 | 2.965783 | GCCTGAGTGAGCGTCAGA | 59.034 | 61.111 | 9.24 | 0.00 | 43.65 | 3.27 |
928 | 1026 | 1.445238 | GCCTGAGTGAGCGTCAGAC | 60.445 | 63.158 | 9.24 | 0.00 | 43.65 | 3.51 |
929 | 1027 | 1.154131 | CCTGAGTGAGCGTCAGACG | 60.154 | 63.158 | 19.10 | 19.10 | 43.65 | 4.18 |
957 | 1055 | 1.228894 | TGAGGTCTTCTGCGAGGGT | 60.229 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
959 | 1057 | 2.435059 | GGTCTTCTGCGAGGGTGC | 60.435 | 66.667 | 0.00 | 0.00 | 0.00 | 5.01 |
989 | 1099 | 4.173924 | GGCTGCTGGAGAGGGAGC | 62.174 | 72.222 | 0.00 | 0.00 | 45.25 | 4.70 |
1080 | 1190 | 0.037232 | GGTCAGTCACCCTCTTTCCG | 60.037 | 60.000 | 0.00 | 0.00 | 39.69 | 4.30 |
1086 | 1196 | 2.037381 | AGTCACCCTCTTTCCGTCTTTC | 59.963 | 50.000 | 0.00 | 0.00 | 0.00 | 2.62 |
1090 | 1200 | 2.038689 | ACCCTCTTTCCGTCTTTCCTTC | 59.961 | 50.000 | 0.00 | 0.00 | 0.00 | 3.46 |
1091 | 1201 | 2.615747 | CCCTCTTTCCGTCTTTCCTTCC | 60.616 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
1097 | 1207 | 2.448453 | TCCGTCTTTCCTTCCTCTCTC | 58.552 | 52.381 | 0.00 | 0.00 | 0.00 | 3.20 |
1099 | 1209 | 2.763448 | CCGTCTTTCCTTCCTCTCTCAT | 59.237 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
1101 | 1211 | 3.181480 | CGTCTTTCCTTCCTCTCTCATCC | 60.181 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
1102 | 1212 | 4.030216 | GTCTTTCCTTCCTCTCTCATCCT | 58.970 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
1103 | 1213 | 4.099419 | GTCTTTCCTTCCTCTCTCATCCTC | 59.901 | 50.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1117 | 1235 | 3.826157 | CTCATCCTCCTGTCCATCTCTAC | 59.174 | 52.174 | 0.00 | 0.00 | 0.00 | 2.59 |
1132 | 1250 | 0.611714 | TCTACCGTTGCTTCCTTCCC | 59.388 | 55.000 | 0.00 | 0.00 | 0.00 | 3.97 |
1141 | 1259 | 1.587043 | GCTTCCTTCCCGCTCAAACC | 61.587 | 60.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1142 | 1260 | 1.298859 | CTTCCTTCCCGCTCAAACCG | 61.299 | 60.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1172 | 1290 | 4.785453 | CCCTTCCCCTGCGCTGTC | 62.785 | 72.222 | 9.73 | 0.00 | 0.00 | 3.51 |
1175 | 1293 | 4.704833 | TTCCCCTGCGCTGTCTGC | 62.705 | 66.667 | 9.73 | 0.00 | 38.57 | 4.26 |
1198 | 1319 | 0.516524 | CTTACGTTTCTTGCTCGCGC | 60.517 | 55.000 | 0.00 | 0.00 | 0.00 | 6.86 |
1199 | 1320 | 1.893168 | TTACGTTTCTTGCTCGCGCC | 61.893 | 55.000 | 0.00 | 0.00 | 34.43 | 6.53 |
1200 | 1321 | 4.776953 | CGTTTCTTGCTCGCGCCG | 62.777 | 66.667 | 0.00 | 0.00 | 34.43 | 6.46 |
1251 | 1372 | 2.545532 | GCAGAATCTCCTCTCGTCCATG | 60.546 | 54.545 | 0.00 | 0.00 | 0.00 | 3.66 |
1256 | 1377 | 1.028905 | CTCCTCTCGTCCATGTCCTC | 58.971 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1258 | 1379 | 1.395826 | CCTCTCGTCCATGTCCTCCC | 61.396 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1266 | 1387 | 1.225704 | CATGTCCTCCCCCTCTTGC | 59.774 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
1291 | 1412 | 2.565394 | CGTAGCTAGGCGCGTTTCG | 61.565 | 63.158 | 8.36 | 3.01 | 45.59 | 3.46 |
1317 | 1438 | 1.701847 | AGATTCTTGCCACAGACACCT | 59.298 | 47.619 | 0.00 | 0.00 | 0.00 | 4.00 |
1327 | 1448 | 2.608261 | CCACAGACACCTTCGTCTTCTC | 60.608 | 54.545 | 0.00 | 0.00 | 43.84 | 2.87 |
1328 | 1449 | 1.614413 | ACAGACACCTTCGTCTTCTCC | 59.386 | 52.381 | 0.00 | 0.00 | 43.84 | 3.71 |
1333 | 1454 | 1.066787 | CACCTTCGTCTTCTCCCTTCC | 60.067 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
1334 | 1455 | 1.203199 | ACCTTCGTCTTCTCCCTTCCT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
1335 | 1456 | 1.903183 | CCTTCGTCTTCTCCCTTCCTT | 59.097 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
1336 | 1457 | 2.093921 | CCTTCGTCTTCTCCCTTCCTTC | 60.094 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
1337 | 1458 | 2.606751 | TCGTCTTCTCCCTTCCTTCT | 57.393 | 50.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1341 | 1462 | 3.510360 | CGTCTTCTCCCTTCCTTCTGTTA | 59.490 | 47.826 | 0.00 | 0.00 | 0.00 | 2.41 |
1368 | 1495 | 0.095935 | CGGTGAGATTCTTGCAAGCG | 59.904 | 55.000 | 21.99 | 12.48 | 0.00 | 4.68 |
1374 | 1501 | 4.093408 | GTGAGATTCTTGCAAGCGTATTCA | 59.907 | 41.667 | 21.99 | 16.51 | 0.00 | 2.57 |
1395 | 1524 | 2.613506 | CCGTGCGTCCCTTTGGAAC | 61.614 | 63.158 | 0.00 | 0.00 | 44.07 | 3.62 |
1406 | 1535 | 2.553028 | CCCTTTGGAACAGCAGAGCTTA | 60.553 | 50.000 | 0.00 | 0.00 | 42.39 | 3.09 |
1541 | 1695 | 1.448985 | TGCGCTTGGATCTTGGTTAC | 58.551 | 50.000 | 9.73 | 0.00 | 0.00 | 2.50 |
1543 | 1697 | 1.666189 | GCGCTTGGATCTTGGTTACTC | 59.334 | 52.381 | 0.00 | 0.00 | 0.00 | 2.59 |
1544 | 1698 | 2.935238 | GCGCTTGGATCTTGGTTACTCA | 60.935 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1545 | 1699 | 2.673368 | CGCTTGGATCTTGGTTACTCAC | 59.327 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1553 | 1707 | 1.003233 | CTTGGTTACTCACCCCCTGTC | 59.997 | 57.143 | 0.00 | 0.00 | 46.68 | 3.51 |
1614 | 1768 | 0.517316 | ACGGCTGTTTCATTTCGAGC | 59.483 | 50.000 | 0.00 | 0.00 | 0.00 | 5.03 |
1651 | 1805 | 1.247567 | ATTGGTTCTTGGGAAGTGCG | 58.752 | 50.000 | 0.00 | 0.00 | 31.46 | 5.34 |
1677 | 1831 | 4.683334 | GGCTGTGTGCGCCGTTTC | 62.683 | 66.667 | 4.18 | 0.00 | 44.05 | 2.78 |
1678 | 1832 | 3.649986 | GCTGTGTGCGCCGTTTCT | 61.650 | 61.111 | 4.18 | 0.00 | 0.00 | 2.52 |
1679 | 1833 | 2.314647 | GCTGTGTGCGCCGTTTCTA | 61.315 | 57.895 | 4.18 | 0.00 | 0.00 | 2.10 |
1725 | 1879 | 3.403558 | GTCCTGTCCCCTCTGCCC | 61.404 | 72.222 | 0.00 | 0.00 | 0.00 | 5.36 |
1749 | 1903 | 5.164233 | GCCTTCTTTTGTTTATGCTTCCTC | 58.836 | 41.667 | 0.00 | 0.00 | 0.00 | 3.71 |
1774 | 1928 | 0.101579 | GTGGCTCTCTACGCTTCTCC | 59.898 | 60.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1852 | 2009 | 0.449388 | CGAGCTGGCATTCCTTGTTC | 59.551 | 55.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1925 | 2082 | 4.388378 | AGCCTCTTATACGGTTCAGTTC | 57.612 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1930 | 2087 | 4.491676 | TCTTATACGGTTCAGTTCACAGC | 58.508 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
1976 | 2133 | 6.684609 | AAACAACAACGAAAAACACTCTTC | 57.315 | 33.333 | 0.00 | 0.00 | 0.00 | 2.87 |
1983 | 2140 | 7.758495 | ACAACGAAAAACACTCTTCTTGTAAT | 58.242 | 30.769 | 0.00 | 0.00 | 0.00 | 1.89 |
1984 | 2141 | 7.696453 | ACAACGAAAAACACTCTTCTTGTAATG | 59.304 | 33.333 | 0.00 | 0.00 | 0.00 | 1.90 |
2008 | 2169 | 7.450074 | TGTGTACTGTAGTTCATTCATCCTTT | 58.550 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
2012 | 2173 | 6.306987 | ACTGTAGTTCATTCATCCTTTGGTT | 58.693 | 36.000 | 0.00 | 0.00 | 0.00 | 3.67 |
2013 | 2174 | 6.207417 | ACTGTAGTTCATTCATCCTTTGGTTG | 59.793 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
2014 | 2175 | 5.476599 | TGTAGTTCATTCATCCTTTGGTTGG | 59.523 | 40.000 | 0.00 | 0.00 | 0.00 | 3.77 |
2015 | 2176 | 3.834231 | AGTTCATTCATCCTTTGGTTGGG | 59.166 | 43.478 | 0.00 | 0.00 | 0.00 | 4.12 |
2017 | 2178 | 3.430453 | TCATTCATCCTTTGGTTGGGTC | 58.570 | 45.455 | 0.00 | 0.00 | 0.00 | 4.46 |
2018 | 2179 | 3.075882 | TCATTCATCCTTTGGTTGGGTCT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 3.85 |
2019 | 2180 | 2.879103 | TCATCCTTTGGTTGGGTCTC | 57.121 | 50.000 | 0.00 | 0.00 | 0.00 | 3.36 |
2020 | 2181 | 2.061848 | TCATCCTTTGGTTGGGTCTCA | 58.938 | 47.619 | 0.00 | 0.00 | 0.00 | 3.27 |
2021 | 2182 | 2.649312 | TCATCCTTTGGTTGGGTCTCAT | 59.351 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
2022 | 2183 | 3.075882 | TCATCCTTTGGTTGGGTCTCATT | 59.924 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
2023 | 2184 | 3.611025 | TCCTTTGGTTGGGTCTCATTT | 57.389 | 42.857 | 0.00 | 0.00 | 0.00 | 2.32 |
2024 | 2185 | 4.733077 | TCCTTTGGTTGGGTCTCATTTA | 57.267 | 40.909 | 0.00 | 0.00 | 0.00 | 1.40 |
2025 | 2186 | 4.403734 | TCCTTTGGTTGGGTCTCATTTAC | 58.596 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
2149 | 2337 | 8.299990 | TGACTTCCTTTTGTCTTTTAAATCCA | 57.700 | 30.769 | 0.00 | 0.00 | 34.57 | 3.41 |
2156 | 2344 | 9.108284 | CCTTTTGTCTTTTAAATCCAAACATGT | 57.892 | 29.630 | 0.00 | 0.00 | 0.00 | 3.21 |
2159 | 2347 | 9.442047 | TTTGTCTTTTAAATCCAAACATGTTGT | 57.558 | 25.926 | 12.82 | 0.00 | 0.00 | 3.32 |
2243 | 2433 | 4.932200 | GCTGAGCGCCAGTATTAATCTAAT | 59.068 | 41.667 | 21.68 | 0.00 | 44.71 | 1.73 |
2245 | 2435 | 4.690748 | TGAGCGCCAGTATTAATCTAATGC | 59.309 | 41.667 | 2.29 | 0.00 | 0.00 | 3.56 |
2276 | 2466 | 2.328099 | GCCCTGCTGTTCGTCTTGG | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 3.61 |
2277 | 2467 | 2.328099 | CCCTGCTGTTCGTCTTGGC | 61.328 | 63.158 | 0.00 | 0.00 | 0.00 | 4.52 |
2278 | 2468 | 1.597854 | CCTGCTGTTCGTCTTGGCA | 60.598 | 57.895 | 0.00 | 0.00 | 0.00 | 4.92 |
2279 | 2469 | 0.957395 | CCTGCTGTTCGTCTTGGCAT | 60.957 | 55.000 | 0.00 | 0.00 | 32.39 | 4.40 |
2381 | 2571 | 3.349927 | TCATTGATCAGGCCTCACTTTG | 58.650 | 45.455 | 0.00 | 0.00 | 0.00 | 2.77 |
2400 | 2590 | 4.829872 | TTGCCTCCGGTTAATCTAAAGA | 57.170 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
2401 | 2591 | 4.829872 | TGCCTCCGGTTAATCTAAAGAA | 57.170 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
2402 | 2592 | 5.367945 | TGCCTCCGGTTAATCTAAAGAAT | 57.632 | 39.130 | 0.00 | 0.00 | 0.00 | 2.40 |
2403 | 2593 | 5.365619 | TGCCTCCGGTTAATCTAAAGAATC | 58.634 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
2404 | 2594 | 4.755629 | GCCTCCGGTTAATCTAAAGAATCC | 59.244 | 45.833 | 0.00 | 0.00 | 0.00 | 3.01 |
2405 | 2595 | 5.686650 | GCCTCCGGTTAATCTAAAGAATCCA | 60.687 | 44.000 | 0.00 | 0.00 | 0.00 | 3.41 |
2406 | 2596 | 5.758784 | CCTCCGGTTAATCTAAAGAATCCAC | 59.241 | 44.000 | 0.00 | 0.00 | 0.00 | 4.02 |
2407 | 2597 | 6.408206 | CCTCCGGTTAATCTAAAGAATCCACT | 60.408 | 42.308 | 0.00 | 0.00 | 0.00 | 4.00 |
2408 | 2598 | 6.346096 | TCCGGTTAATCTAAAGAATCCACTG | 58.654 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2409 | 2599 | 5.007724 | CCGGTTAATCTAAAGAATCCACTGC | 59.992 | 44.000 | 0.00 | 0.00 | 0.00 | 4.40 |
2410 | 2600 | 5.584649 | CGGTTAATCTAAAGAATCCACTGCA | 59.415 | 40.000 | 0.00 | 0.00 | 0.00 | 4.41 |
2411 | 2601 | 6.093495 | CGGTTAATCTAAAGAATCCACTGCAA | 59.907 | 38.462 | 0.00 | 0.00 | 0.00 | 4.08 |
2412 | 2602 | 7.475840 | GGTTAATCTAAAGAATCCACTGCAAG | 58.524 | 38.462 | 0.00 | 0.00 | 42.29 | 4.01 |
2426 | 2616 | 2.354259 | CTGCAAGTTGATGGTCTCTCC | 58.646 | 52.381 | 7.16 | 0.00 | 0.00 | 3.71 |
2496 | 2686 | 7.929941 | AAAAAGAAATGGGTTTAAAGCACAA | 57.070 | 28.000 | 18.43 | 4.67 | 0.00 | 3.33 |
2497 | 2687 | 7.929941 | AAAAGAAATGGGTTTAAAGCACAAA | 57.070 | 28.000 | 18.43 | 2.32 | 0.00 | 2.83 |
2498 | 2688 | 7.552458 | AAAGAAATGGGTTTAAAGCACAAAG | 57.448 | 32.000 | 18.43 | 0.00 | 0.00 | 2.77 |
2499 | 2689 | 5.056480 | AGAAATGGGTTTAAAGCACAAAGC | 58.944 | 37.500 | 18.43 | 1.46 | 46.19 | 3.51 |
2509 | 2699 | 1.929376 | GCACAAAGCAGCACAAAGC | 59.071 | 52.632 | 0.00 | 0.00 | 44.79 | 3.51 |
2638 | 2830 | 4.010349 | GTGGGATTTCTGGACCTTGTTAG | 58.990 | 47.826 | 0.00 | 0.00 | 0.00 | 2.34 |
2642 | 2834 | 5.880887 | GGGATTTCTGGACCTTGTTAGTTAG | 59.119 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
2644 | 2836 | 7.310858 | GGGATTTCTGGACCTTGTTAGTTAGTA | 60.311 | 40.741 | 0.00 | 0.00 | 0.00 | 1.82 |
2645 | 2837 | 8.098912 | GGATTTCTGGACCTTGTTAGTTAGTAA | 58.901 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
2646 | 2838 | 9.668497 | GATTTCTGGACCTTGTTAGTTAGTAAT | 57.332 | 33.333 | 0.00 | 0.00 | 0.00 | 1.89 |
2647 | 2839 | 8.842358 | TTTCTGGACCTTGTTAGTTAGTAATG | 57.158 | 34.615 | 0.00 | 0.00 | 0.00 | 1.90 |
2648 | 2840 | 7.786046 | TCTGGACCTTGTTAGTTAGTAATGA | 57.214 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
2649 | 2841 | 8.197592 | TCTGGACCTTGTTAGTTAGTAATGAA | 57.802 | 34.615 | 0.00 | 0.00 | 0.00 | 2.57 |
2650 | 2842 | 8.092687 | TCTGGACCTTGTTAGTTAGTAATGAAC | 58.907 | 37.037 | 0.00 | 3.92 | 0.00 | 3.18 |
2652 | 2844 | 9.092338 | TGGACCTTGTTAGTTAGTAATGAACTA | 57.908 | 33.333 | 9.83 | 0.00 | 39.80 | 2.24 |
2669 | 2969 | 3.214696 | ACTAATGATTAGTGGCCAGCC | 57.785 | 47.619 | 16.47 | 0.38 | 44.43 | 4.85 |
2673 | 2973 | 0.179048 | TGATTAGTGGCCAGCCGATG | 60.179 | 55.000 | 5.11 | 0.00 | 39.42 | 3.84 |
2812 | 3112 | 5.732633 | TGCATGTTTTTCCTCCATTATTGG | 58.267 | 37.500 | 0.00 | 0.00 | 45.15 | 3.16 |
2821 | 3121 | 5.506730 | TCCTCCATTATTGGTGTGTTGTA | 57.493 | 39.130 | 3.65 | 0.00 | 44.06 | 2.41 |
2884 | 3184 | 2.755836 | ACGCTGTTGTCATGTGTTTC | 57.244 | 45.000 | 0.00 | 0.00 | 0.00 | 2.78 |
2907 | 3207 | 2.685897 | AGAGAGCGACTAGTCAATGGTC | 59.314 | 50.000 | 22.37 | 18.86 | 36.11 | 4.02 |
2909 | 3209 | 2.425312 | AGAGCGACTAGTCAATGGTCTG | 59.575 | 50.000 | 22.29 | 7.67 | 37.26 | 3.51 |
2910 | 3210 | 1.134965 | AGCGACTAGTCAATGGTCTGC | 60.135 | 52.381 | 22.37 | 14.09 | 37.26 | 4.26 |
2926 | 3226 | 2.071844 | CTGCGGGTGACGGTCGATAT | 62.072 | 60.000 | 3.34 | 0.00 | 44.51 | 1.63 |
2931 | 3231 | 1.134907 | GGGTGACGGTCGATATGTTGT | 60.135 | 52.381 | 3.34 | 0.00 | 0.00 | 3.32 |
2933 | 3233 | 2.997986 | GGTGACGGTCGATATGTTGTTT | 59.002 | 45.455 | 3.34 | 0.00 | 0.00 | 2.83 |
2934 | 3234 | 3.434299 | GGTGACGGTCGATATGTTGTTTT | 59.566 | 43.478 | 3.34 | 0.00 | 0.00 | 2.43 |
2935 | 3235 | 4.083696 | GGTGACGGTCGATATGTTGTTTTT | 60.084 | 41.667 | 3.34 | 0.00 | 0.00 | 1.94 |
2954 | 3260 | 2.623878 | TTTGCGGGAGACTGTTAACA | 57.376 | 45.000 | 8.28 | 8.28 | 39.64 | 2.41 |
2970 | 3277 | 9.979270 | GACTGTTAACATAATCTCAGATGTTTG | 57.021 | 33.333 | 9.13 | 0.00 | 42.27 | 2.93 |
3032 | 3364 | 3.181501 | ACAATTGGTATGCGTGATTTCGG | 60.182 | 43.478 | 10.83 | 0.00 | 0.00 | 4.30 |
3035 | 3367 | 1.164041 | GGTATGCGTGATTTCGGGGG | 61.164 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
3036 | 3368 | 0.463116 | GTATGCGTGATTTCGGGGGT | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
3037 | 3369 | 0.462937 | TATGCGTGATTTCGGGGGTG | 60.463 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
3041 | 3373 | 0.802494 | CGTGATTTCGGGGGTGAAAG | 59.198 | 55.000 | 0.00 | 0.00 | 40.86 | 2.62 |
3076 | 3418 | 0.900421 | AGGCGGGTACAAGAACTACC | 59.100 | 55.000 | 0.00 | 0.00 | 33.96 | 3.18 |
3186 | 3530 | 6.324561 | TGCTTACAAGTTTGTTCATATGCA | 57.675 | 33.333 | 2.46 | 0.00 | 42.35 | 3.96 |
3192 | 3536 | 6.615088 | ACAAGTTTGTTCATATGCACAGATC | 58.385 | 36.000 | 8.21 | 4.06 | 38.47 | 2.75 |
3232 | 3576 | 5.163571 | TGCAACGGATGTTATTGTGCATATT | 60.164 | 36.000 | 0.00 | 0.00 | 36.28 | 1.28 |
3243 | 3587 | 5.981088 | ATTGTGCATATTGGTGAAGTCAA | 57.019 | 34.783 | 0.00 | 0.00 | 0.00 | 3.18 |
3365 | 3710 | 5.747197 | GTGGTGGAAGTAGATATGTGTTACG | 59.253 | 44.000 | 0.00 | 0.00 | 0.00 | 3.18 |
3392 | 3738 | 4.157289 | TGGATACGTAGTTCTTCAGACACC | 59.843 | 45.833 | 0.08 | 0.00 | 37.78 | 4.16 |
3574 | 3920 | 8.546597 | ACACCACCTTAAAATATTTTTGATGC | 57.453 | 30.769 | 18.14 | 0.00 | 0.00 | 3.91 |
3591 | 3938 | 5.357742 | TGATGCTTAATAGACTGCCTTCA | 57.642 | 39.130 | 0.00 | 0.00 | 0.00 | 3.02 |
3627 | 3974 | 7.009815 | CCAAACAAATCGAAGAATCATCCATTG | 59.990 | 37.037 | 0.00 | 0.00 | 43.58 | 2.82 |
3826 | 4181 | 6.671605 | TGGTAAACTTTAGTTTTACCAGGGT | 58.328 | 36.000 | 18.45 | 0.00 | 45.07 | 4.34 |
3867 | 4222 | 5.147330 | ACTTGCCTAAATTTTAGGGTTGC | 57.853 | 39.130 | 28.30 | 17.87 | 35.29 | 4.17 |
3896 | 4251 | 6.825721 | AGACTCCCATGACAATAATTCAACTC | 59.174 | 38.462 | 0.00 | 0.00 | 0.00 | 3.01 |
3969 | 4324 | 7.330208 | ACAAGCTTAATCATTTTCATCAAGTGC | 59.670 | 33.333 | 0.00 | 0.00 | 0.00 | 4.40 |
3982 | 4337 | 3.540314 | TCAAGTGCTTGGCATTTTGTT | 57.460 | 38.095 | 11.47 | 0.00 | 41.91 | 2.83 |
3985 | 4340 | 4.099266 | TCAAGTGCTTGGCATTTTGTTACT | 59.901 | 37.500 | 11.47 | 0.00 | 41.91 | 2.24 |
3986 | 4341 | 4.670896 | AGTGCTTGGCATTTTGTTACTT | 57.329 | 36.364 | 0.00 | 0.00 | 41.91 | 2.24 |
3987 | 4342 | 4.620982 | AGTGCTTGGCATTTTGTTACTTC | 58.379 | 39.130 | 0.00 | 0.00 | 41.91 | 3.01 |
4144 | 4499 | 2.224606 | CTTCTGTCCAAGAGCAGCAAA | 58.775 | 47.619 | 0.00 | 0.00 | 35.91 | 3.68 |
4190 | 4545 | 3.242867 | ACTGAGAAAGGGACAGATGACA | 58.757 | 45.455 | 0.00 | 0.00 | 35.85 | 3.58 |
4210 | 4565 | 6.533730 | TGACATCCACATAGATGATTTACCC | 58.466 | 40.000 | 8.44 | 0.00 | 45.43 | 3.69 |
4219 | 4574 | 0.991355 | ATGATTTACCCGGGGGAGCA | 60.991 | 55.000 | 27.92 | 19.01 | 38.96 | 4.26 |
4324 | 4679 | 2.087646 | GCAGAGTTCCTTGGAATGACC | 58.912 | 52.381 | 5.32 | 0.00 | 39.54 | 4.02 |
4369 | 4724 | 8.567285 | ACTTGATATTCAAAATCGAGGTCTTT | 57.433 | 30.769 | 0.00 | 0.00 | 38.63 | 2.52 |
4402 | 4757 | 1.219393 | CCTCCGGAGCTGGAAAGAC | 59.781 | 63.158 | 26.87 | 0.00 | 37.64 | 3.01 |
4435 | 4790 | 3.559024 | CAGAGCACGAAGGCACTG | 58.441 | 61.111 | 10.11 | 10.11 | 43.96 | 3.66 |
4498 | 4853 | 1.298859 | ACGCCATTGCTTCGAAGACC | 61.299 | 55.000 | 28.95 | 12.35 | 34.32 | 3.85 |
4504 | 4859 | 3.368427 | CCATTGCTTCGAAGACCTCTGTA | 60.368 | 47.826 | 28.95 | 4.19 | 34.32 | 2.74 |
4588 | 4943 | 0.467290 | TTGAGCCGGCAGGAAAAACT | 60.467 | 50.000 | 31.54 | 3.33 | 41.02 | 2.66 |
4837 | 5192 | 0.382158 | TGCCGTCAGATAAGAGCTCG | 59.618 | 55.000 | 8.37 | 0.00 | 0.00 | 5.03 |
5010 | 5365 | 1.341187 | TGAGGGCATGCATGATGTTCA | 60.341 | 47.619 | 30.64 | 21.43 | 34.14 | 3.18 |
5011 | 5366 | 1.961394 | GAGGGCATGCATGATGTTCAT | 59.039 | 47.619 | 30.64 | 10.58 | 37.65 | 2.57 |
5359 | 5716 | 7.981789 | CAGTACTTTCTGCTATACTGAATGGAA | 59.018 | 37.037 | 4.59 | 0.00 | 44.81 | 3.53 |
5367 | 5724 | 7.712639 | TCTGCTATACTGAATGGAAACTTGATC | 59.287 | 37.037 | 0.00 | 0.00 | 0.00 | 2.92 |
5375 | 5732 | 9.927081 | ACTGAATGGAAACTTGATCCTAATAAT | 57.073 | 29.630 | 0.00 | 0.00 | 37.85 | 1.28 |
5442 | 5799 | 5.745514 | CATGGAAGCAGACTTGATAAATCG | 58.254 | 41.667 | 0.00 | 0.00 | 35.82 | 3.34 |
5448 | 5805 | 3.375299 | GCAGACTTGATAAATCGCCTGTT | 59.625 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
5461 | 5818 | 1.406069 | CGCCTGTTTGCTATCTCACCT | 60.406 | 52.381 | 0.00 | 0.00 | 0.00 | 4.00 |
5466 | 5823 | 5.358160 | GCCTGTTTGCTATCTCACCTTTTAT | 59.642 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
5479 | 5836 | 8.153221 | TCTCACCTTTTATAAGACCATAACCA | 57.847 | 34.615 | 0.00 | 0.00 | 32.92 | 3.67 |
5546 | 5904 | 7.761651 | AAACAAAGCAGACAAAAAGAAGATC | 57.238 | 32.000 | 0.00 | 0.00 | 0.00 | 2.75 |
5576 | 5934 | 5.233902 | CCTGATAGATGTCAAGAAGCTTTCG | 59.766 | 44.000 | 0.00 | 0.00 | 34.02 | 3.46 |
5684 | 6042 | 0.875059 | GTTCAAGCAGTGTACCAGCC | 59.125 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5851 | 6209 | 1.970352 | GAGCTCAGGGGAGGCAGAAG | 61.970 | 65.000 | 9.40 | 0.00 | 41.67 | 2.85 |
5891 | 6249 | 2.495270 | TGTTGGCAGAAACAGCTTCAAA | 59.505 | 40.909 | 0.00 | 0.00 | 35.16 | 2.69 |
5894 | 6252 | 3.225104 | TGGCAGAAACAGCTTCAAAGAT | 58.775 | 40.909 | 0.00 | 0.00 | 36.40 | 2.40 |
5897 | 6255 | 4.261741 | GGCAGAAACAGCTTCAAAGATCAA | 60.262 | 41.667 | 0.00 | 0.00 | 36.40 | 2.57 |
5909 | 6267 | 3.318839 | TCAAAGATCAAGTTGTTGGCAGG | 59.681 | 43.478 | 2.11 | 0.00 | 34.09 | 4.85 |
5930 | 6288 | 2.262423 | ACAGCTTCAAGGACCAACTC | 57.738 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
5978 | 6336 | 3.648009 | GAGGAGGATATTCGACAAGCTG | 58.352 | 50.000 | 0.00 | 0.00 | 0.00 | 4.24 |
6141 | 6499 | 2.192263 | AGGGGCTCTTCTTACTCCTTG | 58.808 | 52.381 | 0.00 | 0.00 | 0.00 | 3.61 |
6142 | 6500 | 1.909986 | GGGGCTCTTCTTACTCCTTGT | 59.090 | 52.381 | 0.00 | 0.00 | 0.00 | 3.16 |
6143 | 6501 | 2.093394 | GGGGCTCTTCTTACTCCTTGTC | 60.093 | 54.545 | 0.00 | 0.00 | 0.00 | 3.18 |
6259 | 6617 | 8.868522 | TCTGGTCAATGAAGAGAAAATATGTT | 57.131 | 30.769 | 0.00 | 0.00 | 0.00 | 2.71 |
6260 | 6618 | 9.300681 | TCTGGTCAATGAAGAGAAAATATGTTT | 57.699 | 29.630 | 0.00 | 0.00 | 0.00 | 2.83 |
6314 | 6675 | 7.013750 | TGCTCTCTGTATGGTTATCTAAGTCAG | 59.986 | 40.741 | 0.00 | 0.00 | 0.00 | 3.51 |
6345 | 6706 | 7.012704 | CCGTAGCTTACCAGTGTATCTTAACTA | 59.987 | 40.741 | 0.00 | 0.00 | 0.00 | 2.24 |
6414 | 6776 | 7.923878 | TGAAGAAAAAGTTAAAAGGGTATGTGC | 59.076 | 33.333 | 0.00 | 0.00 | 0.00 | 4.57 |
6415 | 6777 | 6.443792 | AGAAAAAGTTAAAAGGGTATGTGCG | 58.556 | 36.000 | 0.00 | 0.00 | 0.00 | 5.34 |
6438 | 7068 | 2.223829 | ACACTCGTTCTTGTGTCCAGAG | 60.224 | 50.000 | 0.00 | 0.00 | 42.95 | 3.35 |
6482 | 7112 | 4.631131 | CGAACCAGCCTCACATGAATATA | 58.369 | 43.478 | 0.00 | 0.00 | 0.00 | 0.86 |
6483 | 7113 | 5.056480 | CGAACCAGCCTCACATGAATATAA | 58.944 | 41.667 | 0.00 | 0.00 | 0.00 | 0.98 |
6485 | 7115 | 6.205464 | CGAACCAGCCTCACATGAATATAATT | 59.795 | 38.462 | 0.00 | 0.00 | 0.00 | 1.40 |
6486 | 7116 | 7.255242 | CGAACCAGCCTCACATGAATATAATTT | 60.255 | 37.037 | 0.00 | 0.00 | 0.00 | 1.82 |
6487 | 7117 | 8.995027 | AACCAGCCTCACATGAATATAATTTA | 57.005 | 30.769 | 0.00 | 0.00 | 0.00 | 1.40 |
6522 | 7152 | 5.590259 | TCAATCTTTCTGCATTTAGCCCTAC | 59.410 | 40.000 | 0.00 | 0.00 | 44.83 | 3.18 |
6524 | 7154 | 5.116084 | TCTTTCTGCATTTAGCCCTACAT | 57.884 | 39.130 | 0.00 | 0.00 | 44.83 | 2.29 |
6528 | 7167 | 4.854173 | TCTGCATTTAGCCCTACATCAAA | 58.146 | 39.130 | 0.00 | 0.00 | 44.83 | 2.69 |
6549 | 7188 | 6.039717 | TCAAACTTGAATTCAGGAAAGAGTGG | 59.960 | 38.462 | 23.00 | 11.41 | 33.55 | 4.00 |
6560 | 7200 | 2.293399 | GGAAAGAGTGGCGAAACACAAT | 59.707 | 45.455 | 7.83 | 0.00 | 43.72 | 2.71 |
6571 | 7212 | 4.150451 | GGCGAAACACAATCAAAATTCAGG | 59.850 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
6622 | 7263 | 5.542779 | AGCTAATAACAGAGGCGGATAAAG | 58.457 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
6629 | 7270 | 0.651031 | GAGGCGGATAAAGTTGCGAC | 59.349 | 55.000 | 0.00 | 0.00 | 38.98 | 5.19 |
6713 | 7360 | 8.792830 | AGCTAGTTTGTTATTATCTCTTTGCA | 57.207 | 30.769 | 0.00 | 0.00 | 0.00 | 4.08 |
6714 | 7361 | 9.231297 | AGCTAGTTTGTTATTATCTCTTTGCAA | 57.769 | 29.630 | 0.00 | 0.00 | 0.00 | 4.08 |
6715 | 7362 | 9.278734 | GCTAGTTTGTTATTATCTCTTTGCAAC | 57.721 | 33.333 | 0.00 | 0.00 | 0.00 | 4.17 |
6718 | 7365 | 8.082242 | AGTTTGTTATTATCTCTTTGCAACACC | 58.918 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
6765 | 7412 | 1.622811 | CACTTCTCTCAGGAGGCAAGT | 59.377 | 52.381 | 7.55 | 7.55 | 37.21 | 3.16 |
6915 | 7566 | 5.289434 | GCCTGCAAGCAGAAAATAATTACAC | 59.711 | 40.000 | 22.76 | 0.00 | 46.30 | 2.90 |
6938 | 7589 | 3.433031 | CGTTAGTCTGGGCCATCCAAATA | 60.433 | 47.826 | 6.72 | 0.00 | 46.51 | 1.40 |
6944 | 7595 | 4.042187 | GTCTGGGCCATCCAAATACTAGAT | 59.958 | 45.833 | 6.72 | 0.00 | 46.51 | 1.98 |
6965 | 7617 | 3.242897 | TACAAAGTGTCCCCCGCCG | 62.243 | 63.158 | 0.00 | 0.00 | 0.00 | 6.46 |
6978 | 7630 | 1.202604 | CCCCGCCGTTGTTACAGATAT | 60.203 | 52.381 | 0.00 | 0.00 | 0.00 | 1.63 |
7000 | 7656 | 5.815233 | TGAGGAACAGAGAGAGTTCATTT | 57.185 | 39.130 | 8.15 | 0.00 | 45.45 | 2.32 |
7051 | 7730 | 6.716934 | TCGAAAGAAGAGTAATATCAGGCT | 57.283 | 37.500 | 0.00 | 0.00 | 37.03 | 4.58 |
7052 | 7731 | 7.113658 | TCGAAAGAAGAGTAATATCAGGCTT | 57.886 | 36.000 | 0.00 | 0.00 | 37.03 | 4.35 |
7053 | 7732 | 7.556844 | TCGAAAGAAGAGTAATATCAGGCTTT | 58.443 | 34.615 | 0.00 | 0.00 | 37.03 | 3.51 |
7054 | 7733 | 7.492669 | TCGAAAGAAGAGTAATATCAGGCTTTG | 59.507 | 37.037 | 0.00 | 0.00 | 37.03 | 2.77 |
7055 | 7734 | 7.278868 | CGAAAGAAGAGTAATATCAGGCTTTGT | 59.721 | 37.037 | 0.00 | 0.00 | 0.00 | 2.83 |
7056 | 7735 | 8.870075 | AAAGAAGAGTAATATCAGGCTTTGTT | 57.130 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
7057 | 7736 | 9.959721 | AAAGAAGAGTAATATCAGGCTTTGTTA | 57.040 | 29.630 | 0.00 | 0.00 | 0.00 | 2.41 |
7115 | 7794 | 1.448540 | AACGCGCTCCTTGATCCTG | 60.449 | 57.895 | 5.73 | 0.00 | 0.00 | 3.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 2.671177 | CGGCACAGGTCGCTTTCTG | 61.671 | 63.158 | 0.00 | 0.00 | 34.18 | 3.02 |
1 | 2 | 2.357517 | CGGCACAGGTCGCTTTCT | 60.358 | 61.111 | 0.00 | 0.00 | 34.18 | 2.52 |
222 | 257 | 2.739913 | CGTTTAGTCTTTTGATGCCCGA | 59.260 | 45.455 | 0.00 | 0.00 | 0.00 | 5.14 |
224 | 259 | 3.078837 | TCCGTTTAGTCTTTTGATGCCC | 58.921 | 45.455 | 0.00 | 0.00 | 0.00 | 5.36 |
225 | 260 | 4.965119 | ATCCGTTTAGTCTTTTGATGCC | 57.035 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
226 | 261 | 9.651718 | CTAATTATCCGTTTAGTCTTTTGATGC | 57.348 | 33.333 | 0.00 | 0.00 | 0.00 | 3.91 |
262 | 297 | 9.553064 | GATTGTATAATATGCTCCCAGGATTAG | 57.447 | 37.037 | 0.00 | 0.00 | 0.00 | 1.73 |
274 | 309 | 9.669353 | CTTCCACTGTTTGATTGTATAATATGC | 57.331 | 33.333 | 0.00 | 0.00 | 0.00 | 3.14 |
282 | 317 | 7.721842 | TGGTATTTCTTCCACTGTTTGATTGTA | 59.278 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
307 | 342 | 0.250989 | TGGGTTAGGAAAAGGGCGTG | 60.251 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
309 | 344 | 1.623163 | TTTGGGTTAGGAAAAGGGCG | 58.377 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
382 | 454 | 1.972752 | TTAAAAACTCGCCCCCGGC | 60.973 | 57.895 | 0.00 | 0.00 | 46.75 | 6.13 |
383 | 455 | 0.890090 | TGTTAAAAACTCGCCCCCGG | 60.890 | 55.000 | 0.00 | 0.00 | 34.56 | 5.73 |
384 | 456 | 1.170442 | ATGTTAAAAACTCGCCCCCG | 58.830 | 50.000 | 0.00 | 0.00 | 0.00 | 5.73 |
416 | 495 | 0.321653 | TGCTCCTCTTTTCCTTCGCC | 60.322 | 55.000 | 0.00 | 0.00 | 0.00 | 5.54 |
430 | 509 | 0.320771 | TTTTCCTCTGCGTCTGCTCC | 60.321 | 55.000 | 0.00 | 0.00 | 43.34 | 4.70 |
462 | 541 | 0.313672 | GCAGCAGTATCTCCCTCTCG | 59.686 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
468 | 547 | 1.601663 | CGCAGTAGCAGCAGTATCTCC | 60.602 | 57.143 | 0.00 | 0.00 | 42.27 | 3.71 |
495 | 577 | 1.436195 | CTCAACGTGGTGTGGTGTGG | 61.436 | 60.000 | 0.00 | 0.00 | 0.00 | 4.17 |
496 | 578 | 2.013807 | CTCAACGTGGTGTGGTGTG | 58.986 | 57.895 | 0.00 | 0.00 | 0.00 | 3.82 |
497 | 579 | 1.817941 | GCTCAACGTGGTGTGGTGT | 60.818 | 57.895 | 0.00 | 0.00 | 0.00 | 4.16 |
498 | 580 | 2.542907 | GGCTCAACGTGGTGTGGTG | 61.543 | 63.158 | 0.00 | 0.00 | 0.00 | 4.17 |
499 | 581 | 2.203153 | GGCTCAACGTGGTGTGGT | 60.203 | 61.111 | 0.00 | 0.00 | 0.00 | 4.16 |
515 | 597 | 1.429021 | CCCGTCGCAATGTCAATGG | 59.571 | 57.895 | 0.00 | 0.00 | 0.00 | 3.16 |
533 | 619 | 4.567385 | CTCTCCTGCTCGCTCCGC | 62.567 | 72.222 | 0.00 | 0.00 | 0.00 | 5.54 |
534 | 620 | 3.898509 | CCTCTCCTGCTCGCTCCG | 61.899 | 72.222 | 0.00 | 0.00 | 0.00 | 4.63 |
535 | 621 | 2.441164 | TCCTCTCCTGCTCGCTCC | 60.441 | 66.667 | 0.00 | 0.00 | 0.00 | 4.70 |
536 | 622 | 2.489275 | CCTCCTCTCCTGCTCGCTC | 61.489 | 68.421 | 0.00 | 0.00 | 0.00 | 5.03 |
540 | 626 | 3.535962 | CCGCCTCCTCTCCTGCTC | 61.536 | 72.222 | 0.00 | 0.00 | 0.00 | 4.26 |
543 | 629 | 2.664081 | AAAGCCGCCTCCTCTCCTG | 61.664 | 63.158 | 0.00 | 0.00 | 0.00 | 3.86 |
544 | 630 | 2.284995 | AAAGCCGCCTCCTCTCCT | 60.285 | 61.111 | 0.00 | 0.00 | 0.00 | 3.69 |
545 | 631 | 2.124942 | CAAAGCCGCCTCCTCTCC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.71 |
546 | 632 | 2.124942 | CCAAAGCCGCCTCCTCTC | 60.125 | 66.667 | 0.00 | 0.00 | 0.00 | 3.20 |
547 | 633 | 4.416738 | GCCAAAGCCGCCTCCTCT | 62.417 | 66.667 | 0.00 | 0.00 | 0.00 | 3.69 |
580 | 670 | 2.886604 | CTGCTCTCTGCGCTCTGC | 60.887 | 66.667 | 9.73 | 6.72 | 46.63 | 4.26 |
581 | 671 | 1.226745 | CTCTGCTCTCTGCGCTCTG | 60.227 | 63.158 | 9.73 | 0.00 | 46.63 | 3.35 |
584 | 674 | 3.359515 | CTGCTCTGCTCTCTGCGCT | 62.360 | 63.158 | 9.73 | 0.00 | 46.63 | 5.92 |
585 | 675 | 2.886604 | CTGCTCTGCTCTCTGCGC | 60.887 | 66.667 | 0.00 | 0.00 | 46.63 | 6.09 |
586 | 676 | 2.886604 | GCTGCTCTGCTCTCTGCG | 60.887 | 66.667 | 0.00 | 0.00 | 46.63 | 5.18 |
587 | 677 | 2.886604 | CGCTGCTCTGCTCTCTGC | 60.887 | 66.667 | 0.00 | 0.00 | 43.25 | 4.26 |
588 | 678 | 2.202770 | CCGCTGCTCTGCTCTCTG | 60.203 | 66.667 | 0.00 | 0.00 | 0.00 | 3.35 |
589 | 679 | 4.146075 | GCCGCTGCTCTGCTCTCT | 62.146 | 66.667 | 0.00 | 0.00 | 33.53 | 3.10 |
629 | 722 | 2.362889 | CCATGGAAGGGGTGGTGC | 60.363 | 66.667 | 5.56 | 0.00 | 31.11 | 5.01 |
647 | 740 | 3.490759 | GATGGCGTGGCGTGTGAG | 61.491 | 66.667 | 0.00 | 0.00 | 0.00 | 3.51 |
660 | 753 | 1.361271 | GCGGCAATGATGGTGATGG | 59.639 | 57.895 | 0.00 | 0.00 | 0.00 | 3.51 |
686 | 779 | 0.252927 | GGGGATATGGAGGGAGGGAG | 60.253 | 65.000 | 0.00 | 0.00 | 0.00 | 4.30 |
708 | 801 | 0.986992 | CGCAGCAGCAGCAATTAAAC | 59.013 | 50.000 | 10.77 | 0.00 | 45.49 | 2.01 |
730 | 823 | 3.145473 | TTGGTGTGGGGGAGGCTTG | 62.145 | 63.158 | 0.00 | 0.00 | 0.00 | 4.01 |
767 | 860 | 3.064820 | GGAAGAGAGTCGTAGCAAGAGAG | 59.935 | 52.174 | 0.00 | 0.00 | 0.00 | 3.20 |
768 | 861 | 3.011119 | GGAAGAGAGTCGTAGCAAGAGA | 58.989 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
769 | 862 | 2.098443 | GGGAAGAGAGTCGTAGCAAGAG | 59.902 | 54.545 | 0.00 | 0.00 | 0.00 | 2.85 |
770 | 863 | 2.093106 | GGGAAGAGAGTCGTAGCAAGA | 58.907 | 52.381 | 0.00 | 0.00 | 0.00 | 3.02 |
771 | 864 | 1.135333 | GGGGAAGAGAGTCGTAGCAAG | 59.865 | 57.143 | 0.00 | 0.00 | 0.00 | 4.01 |
772 | 865 | 1.183549 | GGGGAAGAGAGTCGTAGCAA | 58.816 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
773 | 866 | 0.331954 | AGGGGAAGAGAGTCGTAGCA | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 3.49 |
774 | 867 | 0.741915 | CAGGGGAAGAGAGTCGTAGC | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.58 |
775 | 868 | 0.741915 | GCAGGGGAAGAGAGTCGTAG | 59.258 | 60.000 | 0.00 | 0.00 | 0.00 | 3.51 |
776 | 869 | 0.331954 | AGCAGGGGAAGAGAGTCGTA | 59.668 | 55.000 | 0.00 | 0.00 | 0.00 | 3.43 |
777 | 870 | 1.077625 | AGCAGGGGAAGAGAGTCGT | 59.922 | 57.895 | 0.00 | 0.00 | 0.00 | 4.34 |
778 | 871 | 1.515020 | CAGCAGGGGAAGAGAGTCG | 59.485 | 63.158 | 0.00 | 0.00 | 0.00 | 4.18 |
779 | 872 | 1.220477 | GCAGCAGGGGAAGAGAGTC | 59.780 | 63.158 | 0.00 | 0.00 | 0.00 | 3.36 |
780 | 873 | 2.297129 | GGCAGCAGGGGAAGAGAGT | 61.297 | 63.158 | 0.00 | 0.00 | 0.00 | 3.24 |
800 | 893 | 2.031919 | CCACCCAGCAGTACGCAA | 59.968 | 61.111 | 11.30 | 0.00 | 46.13 | 4.85 |
848 | 946 | 4.244802 | GGACGGCGCGAGAGAGAG | 62.245 | 72.222 | 12.10 | 0.00 | 0.00 | 3.20 |
873 | 971 | 1.821136 | CTTCCCATGCACTTTCCTTCC | 59.179 | 52.381 | 0.00 | 0.00 | 0.00 | 3.46 |
874 | 972 | 2.795329 | TCTTCCCATGCACTTTCCTTC | 58.205 | 47.619 | 0.00 | 0.00 | 0.00 | 3.46 |
879 | 977 | 3.006217 | GCTTTCTTCTTCCCATGCACTTT | 59.994 | 43.478 | 0.00 | 0.00 | 0.00 | 2.66 |
926 | 1024 | 0.241481 | GACCTCACTGTCTGTCCGTC | 59.759 | 60.000 | 0.00 | 0.00 | 32.39 | 4.79 |
927 | 1025 | 0.178987 | AGACCTCACTGTCTGTCCGT | 60.179 | 55.000 | 0.00 | 0.00 | 43.80 | 4.69 |
928 | 1026 | 0.962489 | AAGACCTCACTGTCTGTCCG | 59.038 | 55.000 | 0.00 | 0.00 | 44.68 | 4.79 |
929 | 1027 | 2.029470 | CAGAAGACCTCACTGTCTGTCC | 60.029 | 54.545 | 0.00 | 0.00 | 44.68 | 4.02 |
957 | 1055 | 2.835431 | GCCTCTAGCTCCCTCGCA | 60.835 | 66.667 | 0.00 | 0.00 | 38.99 | 5.10 |
978 | 1076 | 3.347590 | TCCCTCGCTCCCTCTCCA | 61.348 | 66.667 | 0.00 | 0.00 | 0.00 | 3.86 |
989 | 1099 | 3.876274 | TGAACTTCATCTTCTCCCTCG | 57.124 | 47.619 | 0.00 | 0.00 | 0.00 | 4.63 |
1077 | 1187 | 2.225041 | TGAGAGAGGAAGGAAAGACGGA | 60.225 | 50.000 | 0.00 | 0.00 | 0.00 | 4.69 |
1080 | 1190 | 4.030216 | AGGATGAGAGAGGAAGGAAAGAC | 58.970 | 47.826 | 0.00 | 0.00 | 0.00 | 3.01 |
1086 | 1196 | 2.318908 | CAGGAGGATGAGAGAGGAAGG | 58.681 | 57.143 | 0.00 | 0.00 | 0.00 | 3.46 |
1090 | 1200 | 1.063341 | TGGACAGGAGGATGAGAGAGG | 60.063 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
1091 | 1201 | 2.450867 | TGGACAGGAGGATGAGAGAG | 57.549 | 55.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1097 | 1207 | 2.896685 | GGTAGAGATGGACAGGAGGATG | 59.103 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
1099 | 1209 | 1.133761 | CGGTAGAGATGGACAGGAGGA | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.71 |
1101 | 1211 | 2.060050 | ACGGTAGAGATGGACAGGAG | 57.940 | 55.000 | 0.00 | 0.00 | 0.00 | 3.69 |
1102 | 1212 | 2.100197 | CAACGGTAGAGATGGACAGGA | 58.900 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
1103 | 1213 | 1.471676 | GCAACGGTAGAGATGGACAGG | 60.472 | 57.143 | 0.00 | 0.00 | 0.00 | 4.00 |
1117 | 1235 | 3.431725 | GCGGGAAGGAAGCAACGG | 61.432 | 66.667 | 0.00 | 0.00 | 0.00 | 4.44 |
1146 | 1264 | 2.678934 | GGGGAAGGGAAAACCCGC | 60.679 | 66.667 | 0.00 | 0.00 | 44.09 | 6.13 |
1158 | 1276 | 4.704833 | GCAGACAGCGCAGGGGAA | 62.705 | 66.667 | 11.47 | 0.00 | 0.00 | 3.97 |
1172 | 1290 | 2.802816 | AGCAAGAAACGTAAGACAGCAG | 59.197 | 45.455 | 0.00 | 0.00 | 43.62 | 4.24 |
1175 | 1293 | 2.159960 | GCGAGCAAGAAACGTAAGACAG | 60.160 | 50.000 | 0.00 | 0.00 | 43.62 | 3.51 |
1236 | 1357 | 0.626382 | AGGACATGGACGAGAGGAGA | 59.374 | 55.000 | 0.00 | 0.00 | 0.00 | 3.71 |
1240 | 1361 | 1.395826 | GGGGAGGACATGGACGAGAG | 61.396 | 65.000 | 0.00 | 0.00 | 0.00 | 3.20 |
1251 | 1372 | 0.032017 | TAGAGCAAGAGGGGGAGGAC | 60.032 | 60.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1256 | 1377 | 1.258445 | ACGTGTAGAGCAAGAGGGGG | 61.258 | 60.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1258 | 1379 | 1.202313 | GCTACGTGTAGAGCAAGAGGG | 60.202 | 57.143 | 11.12 | 0.00 | 38.62 | 4.30 |
1266 | 1387 | 0.041135 | GCGCCTAGCTACGTGTAGAG | 60.041 | 60.000 | 11.12 | 0.62 | 44.04 | 2.43 |
1291 | 1412 | 1.153958 | GTGGCAAGAATCTTGCGGC | 60.154 | 57.895 | 33.18 | 25.68 | 45.78 | 6.53 |
1296 | 1417 | 2.107204 | AGGTGTCTGTGGCAAGAATCTT | 59.893 | 45.455 | 0.00 | 0.00 | 0.00 | 2.40 |
1317 | 1438 | 2.563179 | CAGAAGGAAGGGAGAAGACGAA | 59.437 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1323 | 1444 | 3.008049 | GCACTAACAGAAGGAAGGGAGAA | 59.992 | 47.826 | 0.00 | 0.00 | 0.00 | 2.87 |
1327 | 1448 | 2.355209 | GGAGCACTAACAGAAGGAAGGG | 60.355 | 54.545 | 0.00 | 0.00 | 0.00 | 3.95 |
1328 | 1449 | 2.355209 | GGGAGCACTAACAGAAGGAAGG | 60.355 | 54.545 | 0.00 | 0.00 | 0.00 | 3.46 |
1333 | 1454 | 0.608640 | ACCGGGAGCACTAACAGAAG | 59.391 | 55.000 | 6.32 | 0.00 | 0.00 | 2.85 |
1334 | 1455 | 0.320374 | CACCGGGAGCACTAACAGAA | 59.680 | 55.000 | 6.32 | 0.00 | 0.00 | 3.02 |
1335 | 1456 | 0.541063 | TCACCGGGAGCACTAACAGA | 60.541 | 55.000 | 6.32 | 0.00 | 0.00 | 3.41 |
1336 | 1457 | 0.108615 | CTCACCGGGAGCACTAACAG | 60.109 | 60.000 | 6.32 | 0.00 | 36.69 | 3.16 |
1337 | 1458 | 0.541063 | TCTCACCGGGAGCACTAACA | 60.541 | 55.000 | 6.32 | 0.00 | 43.70 | 2.41 |
1341 | 1462 | 0.616111 | AGAATCTCACCGGGAGCACT | 60.616 | 55.000 | 6.32 | 6.91 | 43.70 | 4.40 |
1368 | 1495 | 1.641677 | GGACGCACGGCATGAATAC | 59.358 | 57.895 | 0.00 | 0.00 | 0.00 | 1.89 |
1374 | 1501 | 3.055719 | CAAAGGGACGCACGGCAT | 61.056 | 61.111 | 0.00 | 0.00 | 0.00 | 4.40 |
1395 | 1524 | 2.735663 | CGCCATTCTATAAGCTCTGCTG | 59.264 | 50.000 | 0.00 | 0.00 | 39.62 | 4.41 |
1406 | 1535 | 1.594293 | CGAACGGCCGCCATTCTAT | 60.594 | 57.895 | 28.58 | 0.00 | 0.00 | 1.98 |
1437 | 1566 | 2.501723 | AGTAAGAAGGTGGTGATGCGAT | 59.498 | 45.455 | 0.00 | 0.00 | 0.00 | 4.58 |
1439 | 1568 | 2.271800 | GAGTAAGAAGGTGGTGATGCG | 58.728 | 52.381 | 0.00 | 0.00 | 0.00 | 4.73 |
1541 | 1695 | 1.221840 | CAATCGGACAGGGGGTGAG | 59.778 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
1543 | 1697 | 1.622607 | TAGCAATCGGACAGGGGGTG | 61.623 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1544 | 1698 | 0.912487 | TTAGCAATCGGACAGGGGGT | 60.912 | 55.000 | 0.00 | 0.00 | 0.00 | 4.95 |
1545 | 1699 | 0.474184 | ATTAGCAATCGGACAGGGGG | 59.526 | 55.000 | 0.00 | 0.00 | 0.00 | 5.40 |
1553 | 1707 | 1.155889 | TATGGCGCATTAGCAATCGG | 58.844 | 50.000 | 10.83 | 0.00 | 42.27 | 4.18 |
1578 | 1732 | 2.986479 | GCCGTATTTTGGAGCAAAACTG | 59.014 | 45.455 | 0.00 | 0.00 | 44.40 | 3.16 |
1580 | 1734 | 2.986479 | CAGCCGTATTTTGGAGCAAAAC | 59.014 | 45.455 | 0.00 | 0.00 | 44.40 | 2.43 |
1581 | 1735 | 2.625790 | ACAGCCGTATTTTGGAGCAAAA | 59.374 | 40.909 | 0.00 | 0.00 | 45.41 | 2.44 |
1582 | 1736 | 2.235016 | ACAGCCGTATTTTGGAGCAAA | 58.765 | 42.857 | 0.00 | 0.00 | 0.00 | 3.68 |
1614 | 1768 | 0.108804 | ATAGTCAACTCACGCCGTGG | 60.109 | 55.000 | 18.32 | 10.62 | 33.87 | 4.94 |
1651 | 1805 | 1.743252 | GCACACAGCCTAGCACTCC | 60.743 | 63.158 | 0.00 | 0.00 | 37.23 | 3.85 |
1678 | 1832 | 9.456147 | GCAGAAACTGGTAGAGATAGATAGATA | 57.544 | 37.037 | 0.00 | 0.00 | 31.21 | 1.98 |
1679 | 1833 | 7.396055 | GGCAGAAACTGGTAGAGATAGATAGAT | 59.604 | 40.741 | 0.00 | 0.00 | 31.21 | 1.98 |
1725 | 1879 | 3.920412 | GGAAGCATAAACAAAAGAAGGCG | 59.080 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
1774 | 1928 | 4.944619 | TCATAGTGCTAGATCCAGTTGG | 57.055 | 45.455 | 0.00 | 0.00 | 0.00 | 3.77 |
1909 | 2066 | 3.303495 | CGCTGTGAACTGAACCGTATAAG | 59.697 | 47.826 | 0.00 | 0.00 | 0.00 | 1.73 |
1930 | 2087 | 2.886862 | AATCAGAGGACTGCTCATCG | 57.113 | 50.000 | 0.00 | 0.00 | 43.17 | 3.84 |
1956 | 2113 | 5.856455 | ACAAGAAGAGTGTTTTTCGTTGTTG | 59.144 | 36.000 | 0.00 | 0.00 | 29.09 | 3.33 |
1958 | 2115 | 5.622770 | ACAAGAAGAGTGTTTTTCGTTGT | 57.377 | 34.783 | 0.00 | 0.00 | 0.00 | 3.32 |
1959 | 2116 | 7.696453 | ACATTACAAGAAGAGTGTTTTTCGTTG | 59.304 | 33.333 | 0.00 | 0.00 | 0.00 | 4.10 |
1960 | 2117 | 7.696453 | CACATTACAAGAAGAGTGTTTTTCGTT | 59.304 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1961 | 2118 | 7.148306 | ACACATTACAAGAAGAGTGTTTTTCGT | 60.148 | 33.333 | 0.00 | 0.00 | 36.91 | 3.85 |
1962 | 2119 | 7.186804 | ACACATTACAAGAAGAGTGTTTTTCG | 58.813 | 34.615 | 0.00 | 0.00 | 36.91 | 3.46 |
1963 | 2120 | 9.434559 | GTACACATTACAAGAAGAGTGTTTTTC | 57.565 | 33.333 | 0.00 | 0.00 | 40.33 | 2.29 |
1964 | 2121 | 9.174166 | AGTACACATTACAAGAAGAGTGTTTTT | 57.826 | 29.630 | 0.00 | 0.00 | 40.33 | 1.94 |
1965 | 2122 | 8.612619 | CAGTACACATTACAAGAAGAGTGTTTT | 58.387 | 33.333 | 0.00 | 0.00 | 40.33 | 2.43 |
1966 | 2123 | 7.769044 | ACAGTACACATTACAAGAAGAGTGTTT | 59.231 | 33.333 | 0.00 | 0.00 | 40.33 | 2.83 |
1967 | 2124 | 7.272978 | ACAGTACACATTACAAGAAGAGTGTT | 58.727 | 34.615 | 0.00 | 0.00 | 40.33 | 3.32 |
1968 | 2125 | 6.817184 | ACAGTACACATTACAAGAAGAGTGT | 58.183 | 36.000 | 0.00 | 0.00 | 42.25 | 3.55 |
1969 | 2126 | 8.082852 | ACTACAGTACACATTACAAGAAGAGTG | 58.917 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1976 | 2133 | 9.203421 | TGAATGAACTACAGTACACATTACAAG | 57.797 | 33.333 | 0.00 | 0.00 | 31.79 | 3.16 |
1983 | 2140 | 6.605471 | AGGATGAATGAACTACAGTACACA | 57.395 | 37.500 | 0.00 | 0.00 | 0.00 | 3.72 |
1984 | 2141 | 7.148407 | CCAAAGGATGAATGAACTACAGTACAC | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 2.90 |
2008 | 2169 | 5.836024 | AGTAAGTAAATGAGACCCAACCA | 57.164 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
2012 | 2173 | 7.942341 | ACATTTCAAGTAAGTAAATGAGACCCA | 59.058 | 33.333 | 12.51 | 0.00 | 41.14 | 4.51 |
2013 | 2174 | 8.336801 | ACATTTCAAGTAAGTAAATGAGACCC | 57.663 | 34.615 | 12.51 | 0.00 | 41.14 | 4.46 |
2014 | 2175 | 9.827411 | GAACATTTCAAGTAAGTAAATGAGACC | 57.173 | 33.333 | 12.51 | 0.00 | 41.14 | 3.85 |
2018 | 2179 | 9.677567 | GCAAGAACATTTCAAGTAAGTAAATGA | 57.322 | 29.630 | 12.51 | 0.00 | 41.14 | 2.57 |
2019 | 2180 | 9.462174 | TGCAAGAACATTTCAAGTAAGTAAATG | 57.538 | 29.630 | 0.00 | 0.00 | 43.18 | 2.32 |
2021 | 2182 | 9.677567 | GATGCAAGAACATTTCAAGTAAGTAAA | 57.322 | 29.630 | 0.00 | 0.00 | 0.00 | 2.01 |
2022 | 2183 | 9.066892 | AGATGCAAGAACATTTCAAGTAAGTAA | 57.933 | 29.630 | 0.00 | 0.00 | 0.00 | 2.24 |
2023 | 2184 | 8.621532 | AGATGCAAGAACATTTCAAGTAAGTA | 57.378 | 30.769 | 0.00 | 0.00 | 0.00 | 2.24 |
2024 | 2185 | 7.516198 | AGATGCAAGAACATTTCAAGTAAGT | 57.484 | 32.000 | 0.00 | 0.00 | 0.00 | 2.24 |
2025 | 2186 | 8.807667 | AAAGATGCAAGAACATTTCAAGTAAG | 57.192 | 30.769 | 0.00 | 0.00 | 0.00 | 2.34 |
2156 | 2344 | 3.117663 | AGGGGAGAAAACAAGTGCTACAA | 60.118 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
2157 | 2345 | 2.441750 | AGGGGAGAAAACAAGTGCTACA | 59.558 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
2158 | 2346 | 3.075148 | GAGGGGAGAAAACAAGTGCTAC | 58.925 | 50.000 | 0.00 | 0.00 | 0.00 | 3.58 |
2159 | 2347 | 2.979678 | AGAGGGGAGAAAACAAGTGCTA | 59.020 | 45.455 | 0.00 | 0.00 | 0.00 | 3.49 |
2239 | 2429 | 1.528586 | GCGTAGTGGCATCTGCATTAG | 59.471 | 52.381 | 4.33 | 0.00 | 44.36 | 1.73 |
2243 | 2433 | 2.125147 | GGCGTAGTGGCATCTGCA | 60.125 | 61.111 | 4.33 | 0.00 | 44.36 | 4.41 |
2276 | 2466 | 3.385193 | ACTTTAACCAAGTTGCCATGC | 57.615 | 42.857 | 0.00 | 0.00 | 43.89 | 4.06 |
2400 | 2590 | 2.821969 | GACCATCAACTTGCAGTGGATT | 59.178 | 45.455 | 12.09 | 0.00 | 36.77 | 3.01 |
2401 | 2591 | 2.040813 | AGACCATCAACTTGCAGTGGAT | 59.959 | 45.455 | 12.09 | 4.48 | 39.42 | 3.41 |
2402 | 2592 | 1.421268 | AGACCATCAACTTGCAGTGGA | 59.579 | 47.619 | 12.09 | 2.57 | 31.69 | 4.02 |
2403 | 2593 | 1.808945 | GAGACCATCAACTTGCAGTGG | 59.191 | 52.381 | 0.00 | 6.28 | 36.06 | 4.00 |
2404 | 2594 | 2.740981 | GAGAGACCATCAACTTGCAGTG | 59.259 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
2405 | 2595 | 2.289945 | GGAGAGACCATCAACTTGCAGT | 60.290 | 50.000 | 0.00 | 0.00 | 38.79 | 4.40 |
2406 | 2596 | 2.289882 | TGGAGAGACCATCAACTTGCAG | 60.290 | 50.000 | 0.00 | 0.00 | 44.64 | 4.41 |
2407 | 2597 | 1.699083 | TGGAGAGACCATCAACTTGCA | 59.301 | 47.619 | 0.00 | 0.00 | 44.64 | 4.08 |
2408 | 2598 | 2.479566 | TGGAGAGACCATCAACTTGC | 57.520 | 50.000 | 0.00 | 0.00 | 44.64 | 4.01 |
2418 | 2608 | 2.016096 | GCTGGATTGCTTGGAGAGACC | 61.016 | 57.143 | 0.00 | 0.00 | 39.54 | 3.85 |
2419 | 2609 | 1.339438 | TGCTGGATTGCTTGGAGAGAC | 60.339 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
2420 | 2610 | 0.986527 | TGCTGGATTGCTTGGAGAGA | 59.013 | 50.000 | 0.00 | 0.00 | 0.00 | 3.10 |
2421 | 2611 | 2.054232 | ATGCTGGATTGCTTGGAGAG | 57.946 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
2422 | 2612 | 2.025605 | AGAATGCTGGATTGCTTGGAGA | 60.026 | 45.455 | 0.00 | 0.00 | 0.00 | 3.71 |
2423 | 2613 | 2.376109 | AGAATGCTGGATTGCTTGGAG | 58.624 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
2424 | 2614 | 2.519771 | AGAATGCTGGATTGCTTGGA | 57.480 | 45.000 | 0.00 | 0.00 | 0.00 | 3.53 |
2425 | 2615 | 3.604875 | AAAGAATGCTGGATTGCTTGG | 57.395 | 42.857 | 0.00 | 0.00 | 0.00 | 3.61 |
2426 | 2616 | 4.817517 | AGAAAAGAATGCTGGATTGCTTG | 58.182 | 39.130 | 0.00 | 0.00 | 0.00 | 4.01 |
2427 | 2617 | 4.771054 | AGAGAAAAGAATGCTGGATTGCTT | 59.229 | 37.500 | 0.00 | 0.55 | 0.00 | 3.91 |
2428 | 2618 | 4.158025 | CAGAGAAAAGAATGCTGGATTGCT | 59.842 | 41.667 | 0.00 | 0.00 | 0.00 | 3.91 |
2429 | 2619 | 4.157289 | TCAGAGAAAAGAATGCTGGATTGC | 59.843 | 41.667 | 0.00 | 0.00 | 0.00 | 3.56 |
2430 | 2620 | 5.892160 | TCAGAGAAAAGAATGCTGGATTG | 57.108 | 39.130 | 0.00 | 0.00 | 0.00 | 2.67 |
2494 | 2684 | 1.767289 | CTCTGCTTTGTGCTGCTTTG | 58.233 | 50.000 | 0.00 | 0.00 | 43.37 | 2.77 |
2495 | 2685 | 0.031721 | GCTCTGCTTTGTGCTGCTTT | 59.968 | 50.000 | 0.00 | 0.00 | 43.37 | 3.51 |
2496 | 2686 | 0.822532 | AGCTCTGCTTTGTGCTGCTT | 60.823 | 50.000 | 0.00 | 0.00 | 43.37 | 3.91 |
2497 | 2687 | 1.228184 | AGCTCTGCTTTGTGCTGCT | 60.228 | 52.632 | 0.00 | 0.00 | 43.37 | 4.24 |
2498 | 2688 | 3.352524 | AGCTCTGCTTTGTGCTGC | 58.647 | 55.556 | 0.00 | 0.00 | 43.37 | 5.25 |
2507 | 2697 | 1.296068 | GTCAGGCTCAAGCTCTGCT | 59.704 | 57.895 | 12.76 | 0.00 | 42.56 | 4.24 |
2508 | 2698 | 0.392729 | ATGTCAGGCTCAAGCTCTGC | 60.393 | 55.000 | 12.76 | 9.80 | 41.70 | 4.26 |
2509 | 2699 | 2.975732 | TATGTCAGGCTCAAGCTCTG | 57.024 | 50.000 | 11.84 | 11.84 | 41.70 | 3.35 |
2510 | 2700 | 2.770802 | ACATATGTCAGGCTCAAGCTCT | 59.229 | 45.455 | 1.41 | 0.00 | 41.70 | 4.09 |
2642 | 2834 | 7.520614 | GCTGGCCACTAATCATTAGTTCATTAC | 60.521 | 40.741 | 7.38 | 0.00 | 43.70 | 1.89 |
2644 | 2836 | 5.300286 | GCTGGCCACTAATCATTAGTTCATT | 59.700 | 40.000 | 7.38 | 0.00 | 43.70 | 2.57 |
2645 | 2837 | 4.823989 | GCTGGCCACTAATCATTAGTTCAT | 59.176 | 41.667 | 7.38 | 0.00 | 43.70 | 2.57 |
2646 | 2838 | 4.199310 | GCTGGCCACTAATCATTAGTTCA | 58.801 | 43.478 | 7.38 | 6.17 | 43.70 | 3.18 |
2647 | 2839 | 3.565902 | GGCTGGCCACTAATCATTAGTTC | 59.434 | 47.826 | 7.38 | 3.08 | 43.70 | 3.01 |
2648 | 2840 | 3.555966 | GGCTGGCCACTAATCATTAGTT | 58.444 | 45.455 | 7.38 | 0.00 | 43.70 | 2.24 |
2649 | 2841 | 2.485479 | CGGCTGGCCACTAATCATTAGT | 60.485 | 50.000 | 0.00 | 4.03 | 46.96 | 2.24 |
2650 | 2842 | 2.146342 | CGGCTGGCCACTAATCATTAG | 58.854 | 52.381 | 0.00 | 2.58 | 39.18 | 1.73 |
2652 | 2844 | 0.546122 | TCGGCTGGCCACTAATCATT | 59.454 | 50.000 | 0.00 | 0.00 | 35.37 | 2.57 |
2655 | 2955 | 0.886490 | CCATCGGCTGGCCACTAATC | 60.886 | 60.000 | 0.00 | 0.00 | 38.47 | 1.75 |
2669 | 2969 | 0.233074 | GACACGTATGCATGCCATCG | 59.767 | 55.000 | 16.68 | 17.96 | 35.34 | 3.84 |
2673 | 2973 | 0.744414 | ACAGGACACGTATGCATGCC | 60.744 | 55.000 | 16.68 | 0.00 | 0.00 | 4.40 |
2765 | 3065 | 5.303589 | AGTGGCAGTTAAACTAGACTGTGTA | 59.696 | 40.000 | 10.13 | 0.00 | 43.94 | 2.90 |
2766 | 3066 | 4.101119 | AGTGGCAGTTAAACTAGACTGTGT | 59.899 | 41.667 | 10.13 | 0.00 | 43.94 | 3.72 |
2767 | 3067 | 4.449068 | CAGTGGCAGTTAAACTAGACTGTG | 59.551 | 45.833 | 10.13 | 0.00 | 43.94 | 3.66 |
2768 | 3068 | 4.632153 | CAGTGGCAGTTAAACTAGACTGT | 58.368 | 43.478 | 10.13 | 0.00 | 43.94 | 3.55 |
2812 | 3112 | 4.021368 | ACCTCCACTACATCTACAACACAC | 60.021 | 45.833 | 0.00 | 0.00 | 0.00 | 3.82 |
2821 | 3121 | 4.160626 | GCTGTAAAGACCTCCACTACATCT | 59.839 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
2884 | 3184 | 2.286713 | CCATTGACTAGTCGCTCTCTCG | 60.287 | 54.545 | 17.85 | 0.99 | 0.00 | 4.04 |
2907 | 3207 | 2.071844 | ATATCGACCGTCACCCGCAG | 62.072 | 60.000 | 0.00 | 0.00 | 34.38 | 5.18 |
2909 | 3209 | 1.660575 | CATATCGACCGTCACCCGC | 60.661 | 63.158 | 0.00 | 0.00 | 34.38 | 6.13 |
2910 | 3210 | 0.101759 | AACATATCGACCGTCACCCG | 59.898 | 55.000 | 0.00 | 0.00 | 0.00 | 5.28 |
2933 | 3233 | 3.280295 | TGTTAACAGTCTCCCGCAAAAA | 58.720 | 40.909 | 3.59 | 0.00 | 0.00 | 1.94 |
2934 | 3234 | 2.920524 | TGTTAACAGTCTCCCGCAAAA | 58.079 | 42.857 | 3.59 | 0.00 | 0.00 | 2.44 |
2935 | 3235 | 2.623878 | TGTTAACAGTCTCCCGCAAA | 57.376 | 45.000 | 3.59 | 0.00 | 0.00 | 3.68 |
2936 | 3236 | 2.851263 | ATGTTAACAGTCTCCCGCAA | 57.149 | 45.000 | 14.65 | 0.00 | 0.00 | 4.85 |
2937 | 3237 | 3.965379 | TTATGTTAACAGTCTCCCGCA | 57.035 | 42.857 | 14.65 | 0.00 | 0.00 | 5.69 |
2938 | 3238 | 4.694339 | AGATTATGTTAACAGTCTCCCGC | 58.306 | 43.478 | 14.65 | 0.00 | 0.00 | 6.13 |
2939 | 3239 | 5.902681 | TGAGATTATGTTAACAGTCTCCCG | 58.097 | 41.667 | 27.80 | 0.00 | 34.61 | 5.14 |
2941 | 3241 | 8.200792 | ACATCTGAGATTATGTTAACAGTCTCC | 58.799 | 37.037 | 27.80 | 18.22 | 32.43 | 3.71 |
2943 | 3243 | 9.950496 | AAACATCTGAGATTATGTTAACAGTCT | 57.050 | 29.630 | 14.65 | 15.67 | 43.66 | 3.24 |
2944 | 3244 | 9.979270 | CAAACATCTGAGATTATGTTAACAGTC | 57.021 | 33.333 | 14.65 | 11.50 | 43.66 | 3.51 |
2974 | 3281 | 9.350357 | CAGGAAAATGTCAAAACTATCAGAATG | 57.650 | 33.333 | 0.00 | 0.00 | 37.54 | 2.67 |
2979 | 3287 | 6.716628 | AGCTCAGGAAAATGTCAAAACTATCA | 59.283 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
3032 | 3364 | 2.437413 | CTCCTACAAAGCTTTCACCCC | 58.563 | 52.381 | 9.23 | 0.00 | 0.00 | 4.95 |
3035 | 3367 | 2.143925 | ACGCTCCTACAAAGCTTTCAC | 58.856 | 47.619 | 9.23 | 0.00 | 37.62 | 3.18 |
3036 | 3368 | 2.543777 | ACGCTCCTACAAAGCTTTCA | 57.456 | 45.000 | 9.23 | 0.00 | 37.62 | 2.69 |
3037 | 3369 | 3.371285 | CCTAACGCTCCTACAAAGCTTTC | 59.629 | 47.826 | 9.23 | 0.00 | 37.62 | 2.62 |
3041 | 3373 | 1.007580 | GCCTAACGCTCCTACAAAGC | 58.992 | 55.000 | 0.00 | 0.00 | 36.38 | 3.51 |
3108 | 3451 | 9.173021 | CACTCTTTGGTAACCATGATAATGTTA | 57.827 | 33.333 | 0.00 | 0.00 | 31.53 | 2.41 |
3109 | 3452 | 7.669722 | ACACTCTTTGGTAACCATGATAATGTT | 59.330 | 33.333 | 0.00 | 0.00 | 31.53 | 2.71 |
3110 | 3453 | 7.175104 | ACACTCTTTGGTAACCATGATAATGT | 58.825 | 34.615 | 0.00 | 0.00 | 31.53 | 2.71 |
3111 | 3454 | 7.630242 | ACACTCTTTGGTAACCATGATAATG | 57.370 | 36.000 | 0.00 | 0.00 | 31.53 | 1.90 |
3112 | 3455 | 8.522830 | CAAACACTCTTTGGTAACCATGATAAT | 58.477 | 33.333 | 0.00 | 0.00 | 31.53 | 1.28 |
3116 | 3460 | 5.067153 | CACAAACACTCTTTGGTAACCATGA | 59.933 | 40.000 | 0.00 | 0.00 | 31.53 | 3.07 |
3122 | 3466 | 5.708230 | AGAACACACAAACACTCTTTGGTAA | 59.292 | 36.000 | 0.00 | 0.00 | 33.92 | 2.85 |
3179 | 3523 | 2.138320 | GACCACCGATCTGTGCATATG | 58.862 | 52.381 | 11.47 | 0.00 | 34.85 | 1.78 |
3186 | 3530 | 1.178276 | GTCAGAGACCACCGATCTGT | 58.822 | 55.000 | 1.75 | 0.00 | 41.01 | 3.41 |
3232 | 3576 | 5.008613 | GTGCAAGTAGAATTTGACTTCACCA | 59.991 | 40.000 | 15.59 | 8.08 | 33.60 | 4.17 |
3243 | 3587 | 4.516698 | CACTGACCTTGTGCAAGTAGAATT | 59.483 | 41.667 | 10.56 | 0.00 | 36.72 | 2.17 |
3365 | 3710 | 4.639310 | TCTGAAGAACTACGTATCCAGGAC | 59.361 | 45.833 | 0.00 | 0.00 | 0.00 | 3.85 |
3392 | 3738 | 0.796312 | CCCCGACAGTTGAACATTCG | 59.204 | 55.000 | 10.51 | 10.51 | 0.00 | 3.34 |
3591 | 3938 | 5.957842 | TCGATTTGTTTGGTTAGATTGCT | 57.042 | 34.783 | 0.00 | 0.00 | 0.00 | 3.91 |
3826 | 4181 | 9.681062 | AGGCAAGTTTTAAATAGCTAACTGATA | 57.319 | 29.630 | 0.00 | 0.00 | 31.64 | 2.15 |
3867 | 4222 | 6.825213 | TGAATTATTGTCATGGGAGTCTGAAG | 59.175 | 38.462 | 0.00 | 0.00 | 0.00 | 3.02 |
3896 | 4251 | 4.637483 | TCTTTCCTTCAGCAGTGTTTTG | 57.363 | 40.909 | 0.00 | 0.00 | 0.00 | 2.44 |
3969 | 4324 | 5.591099 | ACACTGAAGTAACAAAATGCCAAG | 58.409 | 37.500 | 0.00 | 0.00 | 0.00 | 3.61 |
3982 | 4337 | 6.816640 | GCACTGGTGATTATAACACTGAAGTA | 59.183 | 38.462 | 4.79 | 0.00 | 38.20 | 2.24 |
3985 | 4340 | 5.643348 | CAGCACTGGTGATTATAACACTGAA | 59.357 | 40.000 | 1.74 | 4.64 | 38.20 | 3.02 |
3986 | 4341 | 5.178061 | CAGCACTGGTGATTATAACACTGA | 58.822 | 41.667 | 1.74 | 5.13 | 38.20 | 3.41 |
3987 | 4342 | 4.201851 | GCAGCACTGGTGATTATAACACTG | 60.202 | 45.833 | 12.50 | 10.98 | 38.20 | 3.66 |
4072 | 4427 | 9.297586 | CAGACATAAATTTTCAGTCATGATTGG | 57.702 | 33.333 | 17.19 | 1.97 | 34.73 | 3.16 |
4075 | 4430 | 9.017509 | ACACAGACATAAATTTTCAGTCATGAT | 57.982 | 29.630 | 18.00 | 0.00 | 34.73 | 2.45 |
4144 | 4499 | 4.081365 | GCCTTAAGGACTAGCTTCTGAAGT | 60.081 | 45.833 | 26.21 | 8.18 | 37.39 | 3.01 |
4190 | 4545 | 4.019321 | CCCGGGTAAATCATCTATGTGGAT | 60.019 | 45.833 | 14.18 | 0.00 | 0.00 | 3.41 |
4210 | 4565 | 1.533033 | AAACCCTTTTGCTCCCCCG | 60.533 | 57.895 | 0.00 | 0.00 | 0.00 | 5.73 |
4219 | 4574 | 7.872113 | TTTTGCACATATTTCAAACCCTTTT | 57.128 | 28.000 | 0.00 | 0.00 | 30.45 | 2.27 |
4311 | 4666 | 4.202357 | CCATATCTTCGGTCATTCCAAGGA | 60.202 | 45.833 | 0.00 | 0.00 | 35.57 | 3.36 |
4324 | 4679 | 4.770795 | AGTTCCCTTTGTCCATATCTTCG | 58.229 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
4402 | 4757 | 3.122297 | GCTCTGGAGAACAATGATCGAG | 58.878 | 50.000 | 1.35 | 0.00 | 0.00 | 4.04 |
4435 | 4790 | 1.903183 | AGCTCCTCAGACCAAGGTAAC | 59.097 | 52.381 | 0.00 | 0.00 | 35.29 | 2.50 |
4492 | 4847 | 3.027412 | TGCAGGATCTACAGAGGTCTTC | 58.973 | 50.000 | 0.00 | 0.00 | 32.85 | 2.87 |
4498 | 4853 | 5.931146 | GGATACATTTGCAGGATCTACAGAG | 59.069 | 44.000 | 0.00 | 0.00 | 0.00 | 3.35 |
4504 | 4859 | 3.461085 | ACCAGGATACATTTGCAGGATCT | 59.539 | 43.478 | 0.00 | 0.00 | 41.41 | 2.75 |
4588 | 4943 | 0.252103 | AGTCCTTGGGAGCTACCGAA | 60.252 | 55.000 | 11.35 | 5.07 | 40.11 | 4.30 |
4657 | 5012 | 5.139727 | CCCTTGGATTTGATAGCAACCATA | 58.860 | 41.667 | 4.11 | 0.00 | 32.25 | 2.74 |
4867 | 5222 | 8.281212 | ACCCAACTAATATAGCAACTTTCAAG | 57.719 | 34.615 | 0.00 | 0.00 | 0.00 | 3.02 |
5010 | 5365 | 7.405292 | TCTCTGAACAAGATTATGGACCAAAT | 58.595 | 34.615 | 0.00 | 0.00 | 33.29 | 2.32 |
5011 | 5366 | 6.778821 | TCTCTGAACAAGATTATGGACCAAA | 58.221 | 36.000 | 0.00 | 0.00 | 33.29 | 3.28 |
5414 | 5771 | 4.019792 | TCAAGTCTGCTTCCATGCTTAA | 57.980 | 40.909 | 0.00 | 0.00 | 31.49 | 1.85 |
5442 | 5799 | 2.409948 | AGGTGAGATAGCAAACAGGC | 57.590 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
5448 | 5805 | 7.857456 | TGGTCTTATAAAAGGTGAGATAGCAA | 58.143 | 34.615 | 0.00 | 0.00 | 33.22 | 3.91 |
5461 | 5818 | 7.691213 | TCAGGTGTGGTTATGGTCTTATAAAA | 58.309 | 34.615 | 0.00 | 0.00 | 0.00 | 1.52 |
5466 | 5823 | 4.780554 | TGATCAGGTGTGGTTATGGTCTTA | 59.219 | 41.667 | 0.00 | 0.00 | 0.00 | 2.10 |
5479 | 5836 | 4.660168 | AGAAGAAGCAAATGATCAGGTGT | 58.340 | 39.130 | 0.09 | 0.00 | 0.00 | 4.16 |
5546 | 5904 | 2.904697 | TGACATCTATCAGGCTGCAG | 57.095 | 50.000 | 10.11 | 10.11 | 0.00 | 4.41 |
5550 | 5908 | 3.710677 | AGCTTCTTGACATCTATCAGGCT | 59.289 | 43.478 | 0.00 | 0.00 | 0.00 | 4.58 |
5594 | 5952 | 3.102985 | CGGTCGTTTTGTGTGGCA | 58.897 | 55.556 | 0.00 | 0.00 | 0.00 | 4.92 |
5684 | 6042 | 3.649277 | CTCTCCGCCGTCAGTTGGG | 62.649 | 68.421 | 0.00 | 0.00 | 0.00 | 4.12 |
5759 | 6117 | 1.662044 | CAGCTTGTTTGGGTGCCTC | 59.338 | 57.895 | 0.00 | 0.00 | 0.00 | 4.70 |
5851 | 6209 | 2.555757 | ACAACTTGATCCTTGAAGCTGC | 59.444 | 45.455 | 0.00 | 0.00 | 0.00 | 5.25 |
5891 | 6249 | 2.887152 | GTTCCTGCCAACAACTTGATCT | 59.113 | 45.455 | 0.00 | 0.00 | 0.00 | 2.75 |
5894 | 6252 | 2.023673 | CTGTTCCTGCCAACAACTTGA | 58.976 | 47.619 | 0.00 | 0.00 | 35.83 | 3.02 |
5897 | 6255 | 0.106519 | AGCTGTTCCTGCCAACAACT | 60.107 | 50.000 | 0.00 | 0.00 | 35.83 | 3.16 |
5909 | 6267 | 2.550180 | GAGTTGGTCCTTGAAGCTGTTC | 59.450 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
5978 | 6336 | 3.951769 | ATGCCCCTTGCTGCTCCAC | 62.952 | 63.158 | 0.00 | 0.00 | 42.00 | 4.02 |
6056 | 6414 | 1.578206 | GCTTCACTTCCGTGGGCTTC | 61.578 | 60.000 | 0.00 | 0.00 | 41.53 | 3.86 |
6259 | 6617 | 0.324943 | GCTGCTTACAGTCCTCCCAA | 59.675 | 55.000 | 0.00 | 0.00 | 46.30 | 4.12 |
6260 | 6618 | 0.545309 | AGCTGCTTACAGTCCTCCCA | 60.545 | 55.000 | 0.00 | 0.00 | 46.30 | 4.37 |
6314 | 6675 | 1.328430 | ACTGGTAAGCTACGGGCCTC | 61.328 | 60.000 | 0.84 | 0.00 | 43.05 | 4.70 |
6345 | 6706 | 5.902431 | ACCAAGCATACTAGATCTTTCCTCT | 59.098 | 40.000 | 0.00 | 0.00 | 0.00 | 3.69 |
6359 | 6720 | 6.150140 | ACATTTCAGAGAAGAACCAAGCATAC | 59.850 | 38.462 | 0.00 | 0.00 | 0.00 | 2.39 |
6362 | 6724 | 4.464008 | ACATTTCAGAGAAGAACCAAGCA | 58.536 | 39.130 | 0.00 | 0.00 | 0.00 | 3.91 |
6364 | 6726 | 8.786898 | TCATAAACATTTCAGAGAAGAACCAAG | 58.213 | 33.333 | 0.00 | 0.00 | 0.00 | 3.61 |
6395 | 6757 | 5.299782 | TGTTCGCACATACCCTTTTAACTTT | 59.700 | 36.000 | 0.00 | 0.00 | 0.00 | 2.66 |
6399 | 6761 | 4.752661 | GTGTTCGCACATACCCTTTTAA | 57.247 | 40.909 | 0.00 | 0.00 | 46.85 | 1.52 |
6422 | 6784 | 1.143305 | CTGCTCTGGACACAAGAACG | 58.857 | 55.000 | 0.00 | 0.00 | 0.00 | 3.95 |
6428 | 6790 | 2.936919 | AACATTCTGCTCTGGACACA | 57.063 | 45.000 | 0.00 | 0.00 | 0.00 | 3.72 |
6438 | 7068 | 3.762779 | CCGAATCCTGAAAACATTCTGC | 58.237 | 45.455 | 0.00 | 0.00 | 0.00 | 4.26 |
6485 | 7115 | 9.119418 | TGCAGAAAGATTGATCGGAAAATATAA | 57.881 | 29.630 | 0.00 | 0.00 | 0.00 | 0.98 |
6486 | 7116 | 8.675705 | TGCAGAAAGATTGATCGGAAAATATA | 57.324 | 30.769 | 0.00 | 0.00 | 0.00 | 0.86 |
6487 | 7117 | 7.572523 | TGCAGAAAGATTGATCGGAAAATAT | 57.427 | 32.000 | 0.00 | 0.00 | 0.00 | 1.28 |
6496 | 7126 | 5.301298 | AGGGCTAAATGCAGAAAGATTGATC | 59.699 | 40.000 | 0.00 | 0.00 | 45.15 | 2.92 |
6522 | 7152 | 7.594015 | CACTCTTTCCTGAATTCAAGTTTGATG | 59.406 | 37.037 | 9.88 | 0.00 | 37.00 | 3.07 |
6524 | 7154 | 6.039717 | CCACTCTTTCCTGAATTCAAGTTTGA | 59.960 | 38.462 | 9.88 | 5.03 | 34.92 | 2.69 |
6528 | 7167 | 3.823304 | GCCACTCTTTCCTGAATTCAAGT | 59.177 | 43.478 | 9.88 | 6.02 | 0.00 | 3.16 |
6549 | 7188 | 4.744631 | ACCTGAATTTTGATTGTGTTTCGC | 59.255 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
6571 | 7212 | 6.693545 | GCTGCGTAGTAAGATCCATATATCAC | 59.306 | 42.308 | 1.53 | 0.00 | 0.00 | 3.06 |
6622 | 7263 | 5.507077 | TGATTTGACAAAACTAGTCGCAAC | 58.493 | 37.500 | 4.41 | 0.00 | 38.83 | 4.17 |
6629 | 7270 | 9.330063 | TCTGCCTATATGATTTGACAAAACTAG | 57.670 | 33.333 | 4.41 | 1.15 | 0.00 | 2.57 |
6713 | 7360 | 2.031120 | CATGGAACCTGTGTTGGTGTT | 58.969 | 47.619 | 0.00 | 0.00 | 40.73 | 3.32 |
6714 | 7361 | 1.691196 | CATGGAACCTGTGTTGGTGT | 58.309 | 50.000 | 0.00 | 0.00 | 40.73 | 4.16 |
6715 | 7362 | 0.314935 | GCATGGAACCTGTGTTGGTG | 59.685 | 55.000 | 0.00 | 0.00 | 40.73 | 4.17 |
6716 | 7363 | 0.827507 | GGCATGGAACCTGTGTTGGT | 60.828 | 55.000 | 0.00 | 0.00 | 43.11 | 3.67 |
6717 | 7364 | 0.827089 | TGGCATGGAACCTGTGTTGG | 60.827 | 55.000 | 0.00 | 0.00 | 33.97 | 3.77 |
6718 | 7365 | 0.314935 | GTGGCATGGAACCTGTGTTG | 59.685 | 55.000 | 0.00 | 0.00 | 33.97 | 3.33 |
6883 | 7534 | 2.086869 | TCTGCTTGCAGGCTGATTTAC | 58.913 | 47.619 | 23.46 | 0.00 | 35.75 | 2.01 |
6915 | 7566 | 1.146263 | GGATGGCCCAGACTAACGG | 59.854 | 63.158 | 0.00 | 0.00 | 34.14 | 4.44 |
6938 | 7589 | 4.961099 | GGGGGACACTTTGTAGTATCTAGT | 59.039 | 45.833 | 0.00 | 0.00 | 31.96 | 2.57 |
6944 | 7595 | 0.609662 | GCGGGGGACACTTTGTAGTA | 59.390 | 55.000 | 0.00 | 0.00 | 31.96 | 1.82 |
6955 | 7607 | 2.743538 | GTAACAACGGCGGGGGAC | 60.744 | 66.667 | 13.24 | 1.86 | 0.00 | 4.46 |
6965 | 7617 | 7.548097 | TCTCTGTTCCTCATATCTGTAACAAC | 58.452 | 38.462 | 0.00 | 0.00 | 0.00 | 3.32 |
6978 | 7630 | 5.305386 | TCAAATGAACTCTCTCTGTTCCTCA | 59.695 | 40.000 | 0.00 | 0.00 | 42.04 | 3.86 |
7000 | 7656 | 6.084326 | TCTACGTGCATTATATTCTGCTCA | 57.916 | 37.500 | 0.00 | 0.00 | 39.16 | 4.26 |
7037 | 7716 | 9.780186 | AGGTAATAACAAAGCCTGATATTACTC | 57.220 | 33.333 | 22.35 | 16.80 | 46.01 | 2.59 |
7042 | 7721 | 7.561356 | AGCAAAGGTAATAACAAAGCCTGATAT | 59.439 | 33.333 | 0.00 | 0.00 | 0.00 | 1.63 |
7043 | 7722 | 6.889722 | AGCAAAGGTAATAACAAAGCCTGATA | 59.110 | 34.615 | 0.00 | 0.00 | 0.00 | 2.15 |
7044 | 7723 | 5.716703 | AGCAAAGGTAATAACAAAGCCTGAT | 59.283 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
7047 | 7726 | 4.321974 | GCAGCAAAGGTAATAACAAAGCCT | 60.322 | 41.667 | 0.00 | 0.00 | 0.00 | 4.58 |
7049 | 7728 | 4.385748 | GTGCAGCAAAGGTAATAACAAAGC | 59.614 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
7050 | 7729 | 5.527951 | TGTGCAGCAAAGGTAATAACAAAG | 58.472 | 37.500 | 0.00 | 0.00 | 0.00 | 2.77 |
7051 | 7730 | 5.508825 | CCTGTGCAGCAAAGGTAATAACAAA | 60.509 | 40.000 | 22.54 | 0.00 | 34.30 | 2.83 |
7052 | 7731 | 4.022416 | CCTGTGCAGCAAAGGTAATAACAA | 60.022 | 41.667 | 22.54 | 0.00 | 34.30 | 2.83 |
7053 | 7732 | 3.505680 | CCTGTGCAGCAAAGGTAATAACA | 59.494 | 43.478 | 22.54 | 0.00 | 34.30 | 2.41 |
7054 | 7733 | 3.756434 | TCCTGTGCAGCAAAGGTAATAAC | 59.244 | 43.478 | 28.27 | 0.00 | 39.74 | 1.89 |
7055 | 7734 | 4.009675 | CTCCTGTGCAGCAAAGGTAATAA | 58.990 | 43.478 | 28.27 | 10.30 | 39.74 | 1.40 |
7056 | 7735 | 3.609853 | CTCCTGTGCAGCAAAGGTAATA | 58.390 | 45.455 | 28.27 | 10.67 | 39.74 | 0.98 |
7057 | 7736 | 2.440409 | CTCCTGTGCAGCAAAGGTAAT | 58.560 | 47.619 | 28.27 | 0.00 | 39.74 | 1.89 |
7058 | 7737 | 1.545428 | CCTCCTGTGCAGCAAAGGTAA | 60.545 | 52.381 | 28.27 | 11.73 | 39.74 | 2.85 |
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.