Multiple sequence alignment - TraesCS5A01G223300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G223300 chr5A 100.000 7093 0 0 1 7093 439181002 439188094 0.000000e+00 13099.0
1 TraesCS5A01G223300 chr5A 90.779 488 42 2 5059 5543 439183879 439184366 0.000000e+00 649.0
2 TraesCS5A01G223300 chr5A 90.779 488 42 2 2878 3365 439186060 439186544 0.000000e+00 649.0
3 TraesCS5A01G223300 chr5A 74.604 1390 257 51 4739 6050 439184603 439185974 2.270000e-144 523.0
4 TraesCS5A01G223300 chr5A 74.604 1390 257 51 3602 4973 439185740 439187051 2.270000e-144 523.0
5 TraesCS5A01G223300 chr5A 86.939 245 32 0 5807 6051 439184603 439184847 7.010000e-70 276.0
6 TraesCS5A01G223300 chr5A 86.939 245 32 0 3602 3846 439186808 439187052 7.010000e-70 276.0
7 TraesCS5A01G223300 chr5A 97.959 147 2 1 1099 1245 361454625 361454770 3.280000e-63 254.0
8 TraesCS5A01G223300 chr5A 93.496 123 8 0 1660 1782 438925643 438925765 4.370000e-42 183.0
9 TraesCS5A01G223300 chr5A 80.952 126 20 2 2391 2516 438926383 438926504 5.860000e-16 97.1
10 TraesCS5A01G223300 chr5D 91.956 4202 271 26 2918 7090 338240707 338244870 0.000000e+00 5825.0
11 TraesCS5A01G223300 chr5D 90.928 1444 86 22 1264 2676 338239282 338240711 0.000000e+00 1899.0
12 TraesCS5A01G223300 chr5D 90.040 502 47 1 2878 3379 338242848 338243346 0.000000e+00 647.0
13 TraesCS5A01G223300 chr5D 74.892 1390 253 55 4739 6050 338241391 338242762 4.840000e-151 545.0
14 TraesCS5A01G223300 chr5D 87.528 449 51 3 5099 5543 338240707 338241154 1.360000e-141 514.0
15 TraesCS5A01G223300 chr5D 85.714 245 35 0 5807 6051 338241391 338241635 7.060000e-65 259.0
16 TraesCS5A01G223300 chr5D 87.500 224 19 4 3379 3602 338243301 338243515 4.250000e-62 250.0
17 TraesCS5A01G223300 chr5D 94.203 138 3 4 970 1106 338239114 338239247 9.330000e-49 206.0
18 TraesCS5A01G223300 chr5D 100.000 36 0 0 919 954 338239078 338239113 4.590000e-07 67.6
19 TraesCS5A01G223300 chr5B 93.698 1809 111 3 3217 5025 397428449 397430254 0.000000e+00 2706.0
20 TraesCS5A01G223300 chr5B 90.953 1647 143 2 3379 5025 397430769 397432409 0.000000e+00 2211.0
21 TraesCS5A01G223300 chr5B 88.495 1043 68 15 5595 6613 397433042 397434056 0.000000e+00 1214.0
22 TraesCS5A01G223300 chr5B 91.568 676 38 10 1537 2199 397427067 397427736 0.000000e+00 915.0
23 TraesCS5A01G223300 chr5B 85.103 725 75 14 5015 5712 397430276 397430994 0.000000e+00 710.0
24 TraesCS5A01G223300 chr5B 90.858 536 39 5 2845 3379 397430288 397430814 0.000000e+00 710.0
25 TraesCS5A01G223300 chr5B 89.655 406 36 3 3197 3602 397432756 397433155 4.910000e-141 512.0
26 TraesCS5A01G223300 chr5B 74.333 1387 263 45 4739 6050 397430989 397432357 2.950000e-138 503.0
27 TraesCS5A01G223300 chr5B 74.212 1365 249 57 4764 6048 397428859 397430200 6.440000e-130 475.0
28 TraesCS5A01G223300 chr5B 89.091 330 35 1 5015 5343 397432431 397432760 6.620000e-110 409.0
29 TraesCS5A01G223300 chr5B 94.361 266 12 3 6830 7093 397434063 397434327 8.570000e-109 405.0
30 TraesCS5A01G223300 chr5B 88.589 333 30 4 2832 3160 397432427 397432755 1.430000e-106 398.0
31 TraesCS5A01G223300 chr5B 90.291 309 18 2 2371 2676 397427888 397428187 1.850000e-105 394.0
32 TraesCS5A01G223300 chr5B 93.725 255 16 0 2918 3172 397428192 397428446 4.010000e-102 383.0
33 TraesCS5A01G223300 chr5B 82.972 323 30 18 766 1083 397426403 397426705 1.170000e-67 268.0
34 TraesCS5A01G223300 chr5B 85.306 245 36 0 3602 3846 397433254 397433498 3.280000e-63 254.0
35 TraesCS5A01G223300 chr5B 84.615 273 17 11 1259 1518 397426737 397426997 1.530000e-61 248.0
36 TraesCS5A01G223300 chr5B 92.308 169 13 0 5375 5543 397432756 397432924 2.560000e-59 241.0
37 TraesCS5A01G223300 chr5B 84.082 245 39 0 5807 6051 397428834 397429078 3.310000e-58 237.0
38 TraesCS5A01G223300 chr5B 93.289 149 10 0 5395 5543 397428449 397428597 3.330000e-53 220.0
39 TraesCS5A01G223300 chr5B 94.872 117 6 0 1661 1777 396836678 396836794 4.370000e-42 183.0
40 TraesCS5A01G223300 chr5B 94.872 117 6 0 1661 1777 396839043 396839159 4.370000e-42 183.0
41 TraesCS5A01G223300 chr5B 94.872 117 6 0 1661 1777 396841707 396841823 4.370000e-42 183.0
42 TraesCS5A01G223300 chr5B 94.872 117 6 0 1661 1777 396846875 396846991 4.370000e-42 183.0
43 TraesCS5A01G223300 chr5B 82.979 188 29 2 3392 3579 397432375 397432559 4.400000e-37 167.0
44 TraesCS5A01G223300 chr5B 93.443 61 4 0 2455 2515 396629339 396629399 2.720000e-14 91.6
45 TraesCS5A01G223300 chr6D 95.170 766 30 5 1 763 379093180 379092419 0.000000e+00 1203.0
46 TraesCS5A01G223300 chr3D 93.068 779 47 5 2 773 31867110 31867888 0.000000e+00 1133.0
47 TraesCS5A01G223300 chr3D 92.876 772 48 7 1 767 115036473 115035704 0.000000e+00 1114.0
48 TraesCS5A01G223300 chr2D 93.005 772 51 3 3 772 505640657 505639887 0.000000e+00 1123.0
49 TraesCS5A01G223300 chr7D 92.446 781 47 12 1 773 177122474 177121698 0.000000e+00 1105.0
50 TraesCS5A01G223300 chr1D 92.727 770 48 8 1 763 469382158 469382926 0.000000e+00 1105.0
51 TraesCS5A01G223300 chr7A 92.258 775 53 5 1 769 663598769 663597996 0.000000e+00 1092.0
52 TraesCS5A01G223300 chr7A 91.775 766 59 4 1 763 245934888 245935652 0.000000e+00 1062.0
53 TraesCS5A01G223300 chr7A 97.959 147 3 0 1099 1245 493942131 493942277 9.130000e-64 255.0
54 TraesCS5A01G223300 chr7A 96.667 150 5 0 1096 1245 47626291 47626440 4.250000e-62 250.0
55 TraesCS5A01G223300 chr6B 91.923 780 56 7 1 773 63260838 63261617 0.000000e+00 1085.0
56 TraesCS5A01G223300 chr6B 97.945 146 3 0 1100 1245 52153979 52154124 3.280000e-63 254.0
57 TraesCS5A01G223300 chr3B 99.301 143 1 0 1103 1245 651427888 651427746 7.060000e-65 259.0
58 TraesCS5A01G223300 chr4B 98.621 145 2 0 1101 1245 658178330 658178186 2.540000e-64 257.0
59 TraesCS5A01G223300 chr3A 99.296 142 1 0 1104 1245 710866861 710866720 2.540000e-64 257.0
60 TraesCS5A01G223300 chr2B 99.296 142 1 0 1104 1245 357152495 357152354 2.540000e-64 257.0
61 TraesCS5A01G223300 chr2B 99.291 141 1 0 1105 1245 710833393 710833253 9.130000e-64 255.0
62 TraesCS5A01G223300 chr2B 90.625 64 6 0 6581 6644 224586530 224586467 1.270000e-12 86.1
63 TraesCS5A01G223300 chrUn 94.872 117 6 0 1661 1777 371429219 371429103 4.370000e-42 183.0
64 TraesCS5A01G223300 chr4A 91.228 57 3 2 6581 6637 614871662 614871716 7.630000e-10 76.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G223300 chr5A 439181002 439188094 7092 False 13099.000000 13099 100.000000 1 7093 1 chr5A.!!$F2 7092
1 TraesCS5A01G223300 chr5A 439183879 439187052 3173 False 482.666667 649 84.107333 2878 6051 6 chr5A.!!$F4 3173
2 TraesCS5A01G223300 chr5D 338239078 338244870 5792 False 1999.400000 5825 94.271750 919 7090 4 chr5D.!!$F1 6171
3 TraesCS5A01G223300 chr5D 338240707 338243515 2808 False 443.000000 647 85.134800 2878 6051 5 chr5D.!!$F2 3173
4 TraesCS5A01G223300 chr5B 397426403 397434327 7924 False 646.666667 2706 87.642048 766 7093 21 chr5B.!!$F4 6327
5 TraesCS5A01G223300 chr6D 379092419 379093180 761 True 1203.000000 1203 95.170000 1 763 1 chr6D.!!$R1 762
6 TraesCS5A01G223300 chr3D 31867110 31867888 778 False 1133.000000 1133 93.068000 2 773 1 chr3D.!!$F1 771
7 TraesCS5A01G223300 chr3D 115035704 115036473 769 True 1114.000000 1114 92.876000 1 767 1 chr3D.!!$R1 766
8 TraesCS5A01G223300 chr2D 505639887 505640657 770 True 1123.000000 1123 93.005000 3 772 1 chr2D.!!$R1 769
9 TraesCS5A01G223300 chr7D 177121698 177122474 776 True 1105.000000 1105 92.446000 1 773 1 chr7D.!!$R1 772
10 TraesCS5A01G223300 chr1D 469382158 469382926 768 False 1105.000000 1105 92.727000 1 763 1 chr1D.!!$F1 762
11 TraesCS5A01G223300 chr7A 663597996 663598769 773 True 1092.000000 1092 92.258000 1 769 1 chr7A.!!$R1 768
12 TraesCS5A01G223300 chr7A 245934888 245935652 764 False 1062.000000 1062 91.775000 1 763 1 chr7A.!!$F2 762
13 TraesCS5A01G223300 chr6B 63260838 63261617 779 False 1085.000000 1085 91.923000 1 773 1 chr6B.!!$F2 772

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
124 131 0.108585 ACCCGAACATGTCAGTTGCT 59.891 50.0 0.0 0.0 0.00 3.91 F
1119 1171 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.0 0.0 0.0 0.00 3.62 F
2581 2838 0.035317 TGCCAGGTACAAGCAGACTG 59.965 55.0 0.0 0.0 33.78 3.51 F
2793 3050 0.036858 GTCAGACTTGGAGGAGCACC 60.037 60.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1421 1516 0.036294 GGCAGAACAGTCCCAGTACC 60.036 60.000 0.00 0.00 0.00 3.34 R
2594 2851 0.034574 TCCCGGCACAATGCTTATGT 60.035 50.000 0.00 0.00 44.28 2.29 R
6058 8538 1.078918 CTGGCGAGCATCACCTGAA 60.079 57.895 0.00 0.00 38.38 3.02 R
6233 8727 0.376152 CCGATGTTGCACTGCAGATC 59.624 55.000 23.35 10.69 40.61 2.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
94 96 3.508402 TGTGATTGCAAGCAGATGACAAT 59.492 39.130 19.34 0.00 33.11 2.71
124 131 0.108585 ACCCGAACATGTCAGTTGCT 59.891 50.000 0.00 0.00 0.00 3.91
207 215 6.581712 TCTTTCTTTTTAAATGGCAACTGCT 58.418 32.000 1.06 0.00 41.70 4.24
250 258 2.683362 GGCAATTCTCTCTTTTACCCGG 59.317 50.000 0.00 0.00 0.00 5.73
385 397 1.308047 TGGCAACAGCTGTAGTTGTG 58.692 50.000 22.01 15.40 46.09 3.33
476 489 1.499056 CGACATGGCAACTGCACTC 59.501 57.895 0.00 0.00 44.36 3.51
495 508 1.341852 TCAAACGAACATGGACGAGGA 59.658 47.619 17.79 10.17 0.00 3.71
707 725 1.627297 CCTGGTCCTCTTAGGCACCC 61.627 65.000 10.27 2.28 35.81 4.61
716 734 0.400213 CTTAGGCACCCCACAGAACA 59.600 55.000 0.00 0.00 0.00 3.18
743 761 2.026262 ACAGATTCCTTAACGCCCACAT 60.026 45.455 0.00 0.00 0.00 3.21
773 791 5.503520 GCAGTTAGCGGCGTTCTATAAAAAT 60.504 40.000 9.37 0.00 0.00 1.82
834 852 1.084370 CAGCAGTACTACCGCAAGCC 61.084 60.000 6.47 0.00 0.00 4.35
838 856 4.151582 TACTACCGCAAGCCGCCC 62.152 66.667 0.00 0.00 37.30 6.13
873 891 3.680786 GGCACCCCAAAACGGAGC 61.681 66.667 0.00 0.00 36.56 4.70
874 892 2.909965 GCACCCCAAAACGGAGCA 60.910 61.111 0.00 0.00 36.56 4.26
875 893 3.039134 CACCCCAAAACGGAGCAC 58.961 61.111 0.00 0.00 36.56 4.40
876 894 1.528309 CACCCCAAAACGGAGCACT 60.528 57.895 0.00 0.00 36.56 4.40
877 895 1.228154 ACCCCAAAACGGAGCACTC 60.228 57.895 0.00 0.00 36.56 3.51
878 896 2.325082 CCCCAAAACGGAGCACTCG 61.325 63.158 0.00 0.00 36.56 4.18
879 897 1.301401 CCCAAAACGGAGCACTCGA 60.301 57.895 0.64 0.00 36.56 4.04
880 898 0.882927 CCCAAAACGGAGCACTCGAA 60.883 55.000 0.64 0.00 36.56 3.71
881 899 0.512952 CCAAAACGGAGCACTCGAAG 59.487 55.000 0.64 0.00 36.56 3.79
882 900 1.217882 CAAAACGGAGCACTCGAAGT 58.782 50.000 0.64 0.00 0.00 3.01
883 901 1.597663 CAAAACGGAGCACTCGAAGTT 59.402 47.619 0.64 0.00 0.00 2.66
884 902 1.499049 AAACGGAGCACTCGAAGTTC 58.501 50.000 0.00 0.00 0.00 3.01
885 903 0.319641 AACGGAGCACTCGAAGTTCC 60.320 55.000 9.52 9.52 0.00 3.62
886 904 1.446272 CGGAGCACTCGAAGTTCCC 60.446 63.158 12.71 0.10 0.00 3.97
887 905 1.079057 GGAGCACTCGAAGTTCCCC 60.079 63.158 8.65 0.00 0.00 4.81
888 906 1.446272 GAGCACTCGAAGTTCCCCG 60.446 63.158 0.00 0.00 0.00 5.73
889 907 2.156051 GAGCACTCGAAGTTCCCCGT 62.156 60.000 0.00 0.00 0.00 5.28
893 911 1.079336 CTCGAAGTTCCCCGTTCCC 60.079 63.158 0.00 0.00 0.00 3.97
898 916 4.772687 GTTCCCCGTTCCCCTCGC 62.773 72.222 0.00 0.00 0.00 5.03
901 919 3.158648 CCCCGTTCCCCTCGCATA 61.159 66.667 0.00 0.00 0.00 3.14
1092 1144 2.046314 GCCTCCGCTGCCTTTGTA 60.046 61.111 0.00 0.00 0.00 2.41
1093 1145 2.399356 GCCTCCGCTGCCTTTGTAC 61.399 63.158 0.00 0.00 0.00 2.90
1105 1157 2.863809 CCTTTGTACCAGGAAGCAACT 58.136 47.619 0.00 0.00 32.41 3.16
1106 1158 3.809324 GCCTTTGTACCAGGAAGCAACTA 60.809 47.826 11.61 0.00 32.41 2.24
1107 1159 3.751698 CCTTTGTACCAGGAAGCAACTAC 59.248 47.826 0.00 0.00 32.41 2.73
1108 1160 4.505039 CCTTTGTACCAGGAAGCAACTACT 60.505 45.833 0.00 0.00 32.41 2.57
1109 1161 3.955650 TGTACCAGGAAGCAACTACTC 57.044 47.619 0.00 0.00 0.00 2.59
1110 1162 2.565834 TGTACCAGGAAGCAACTACTCC 59.434 50.000 0.00 0.00 0.00 3.85
1111 1163 0.984995 ACCAGGAAGCAACTACTCCC 59.015 55.000 0.00 0.00 0.00 4.30
1112 1164 1.280457 CCAGGAAGCAACTACTCCCT 58.720 55.000 0.00 0.00 0.00 4.20
1113 1165 1.208293 CCAGGAAGCAACTACTCCCTC 59.792 57.143 0.00 0.00 0.00 4.30
1114 1166 1.208293 CAGGAAGCAACTACTCCCTCC 59.792 57.143 0.00 0.00 0.00 4.30
1115 1167 0.175989 GGAAGCAACTACTCCCTCCG 59.824 60.000 0.00 0.00 0.00 4.63
1116 1168 0.896226 GAAGCAACTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
1117 1169 1.275573 GAAGCAACTACTCCCTCCGTT 59.724 52.381 0.00 0.00 0.00 4.44
1118 1170 0.896226 AGCAACTACTCCCTCCGTTC 59.104 55.000 0.00 0.00 0.00 3.95
1119 1171 0.108281 GCAACTACTCCCTCCGTTCC 60.108 60.000 0.00 0.00 0.00 3.62
1120 1172 1.558233 CAACTACTCCCTCCGTTCCT 58.442 55.000 0.00 0.00 0.00 3.36
1121 1173 2.731572 CAACTACTCCCTCCGTTCCTA 58.268 52.381 0.00 0.00 0.00 2.94
1122 1174 3.094572 CAACTACTCCCTCCGTTCCTAA 58.905 50.000 0.00 0.00 0.00 2.69
1123 1175 3.463048 ACTACTCCCTCCGTTCCTAAA 57.537 47.619 0.00 0.00 0.00 1.85
1124 1176 3.991683 ACTACTCCCTCCGTTCCTAAAT 58.008 45.455 0.00 0.00 0.00 1.40
1125 1177 5.134725 ACTACTCCCTCCGTTCCTAAATA 57.865 43.478 0.00 0.00 0.00 1.40
1126 1178 5.713807 ACTACTCCCTCCGTTCCTAAATAT 58.286 41.667 0.00 0.00 0.00 1.28
1127 1179 6.141790 ACTACTCCCTCCGTTCCTAAATATT 58.858 40.000 0.00 0.00 0.00 1.28
1128 1180 5.970501 ACTCCCTCCGTTCCTAAATATTT 57.029 39.130 5.89 5.89 0.00 1.40
1129 1181 5.681639 ACTCCCTCCGTTCCTAAATATTTG 58.318 41.667 11.05 1.40 0.00 2.32
1130 1182 5.191124 ACTCCCTCCGTTCCTAAATATTTGT 59.809 40.000 11.05 0.00 0.00 2.83
1131 1183 5.677567 TCCCTCCGTTCCTAAATATTTGTC 58.322 41.667 11.05 0.00 0.00 3.18
1132 1184 5.427481 TCCCTCCGTTCCTAAATATTTGTCT 59.573 40.000 11.05 0.00 0.00 3.41
1133 1185 6.069847 TCCCTCCGTTCCTAAATATTTGTCTT 60.070 38.462 11.05 0.00 0.00 3.01
1134 1186 6.602009 CCCTCCGTTCCTAAATATTTGTCTTT 59.398 38.462 11.05 0.00 0.00 2.52
1135 1187 7.201705 CCCTCCGTTCCTAAATATTTGTCTTTC 60.202 40.741 11.05 0.00 0.00 2.62
1136 1188 7.553044 CCTCCGTTCCTAAATATTTGTCTTTCT 59.447 37.037 11.05 0.00 0.00 2.52
1137 1189 9.595823 CTCCGTTCCTAAATATTTGTCTTTCTA 57.404 33.333 11.05 0.00 0.00 2.10
1138 1190 9.595823 TCCGTTCCTAAATATTTGTCTTTCTAG 57.404 33.333 11.05 0.00 0.00 2.43
1139 1191 9.595823 CCGTTCCTAAATATTTGTCTTTCTAGA 57.404 33.333 11.05 0.00 0.00 2.43
1210 1262 7.138692 AGTGTAGATTCACTCATTTTGCTTC 57.861 36.000 0.00 0.00 44.07 3.86
1211 1263 6.017933 GTGTAGATTCACTCATTTTGCTTCG 58.982 40.000 0.00 0.00 35.68 3.79
1212 1264 5.700832 TGTAGATTCACTCATTTTGCTTCGT 59.299 36.000 0.00 0.00 0.00 3.85
1213 1265 6.871492 TGTAGATTCACTCATTTTGCTTCGTA 59.129 34.615 0.00 0.00 0.00 3.43
1214 1266 6.992063 AGATTCACTCATTTTGCTTCGTAT 57.008 33.333 0.00 0.00 0.00 3.06
1215 1267 6.779117 AGATTCACTCATTTTGCTTCGTATG 58.221 36.000 0.00 0.00 0.00 2.39
1216 1268 5.940192 TTCACTCATTTTGCTTCGTATGT 57.060 34.783 0.00 0.00 0.00 2.29
1217 1269 7.549134 AGATTCACTCATTTTGCTTCGTATGTA 59.451 33.333 0.00 0.00 0.00 2.29
1218 1270 6.647212 TCACTCATTTTGCTTCGTATGTAG 57.353 37.500 0.00 0.00 0.00 2.74
1219 1271 6.163476 TCACTCATTTTGCTTCGTATGTAGT 58.837 36.000 0.00 0.00 0.00 2.73
1220 1272 6.310467 TCACTCATTTTGCTTCGTATGTAGTC 59.690 38.462 0.00 0.00 0.00 2.59
1221 1273 6.090763 CACTCATTTTGCTTCGTATGTAGTCA 59.909 38.462 0.00 0.00 0.00 3.41
1222 1274 6.090898 ACTCATTTTGCTTCGTATGTAGTCAC 59.909 38.462 0.00 0.00 0.00 3.67
1223 1275 6.163476 TCATTTTGCTTCGTATGTAGTCACT 58.837 36.000 0.00 0.00 0.00 3.41
1224 1276 6.649141 TCATTTTGCTTCGTATGTAGTCACTT 59.351 34.615 0.00 0.00 0.00 3.16
1225 1277 5.839262 TTTGCTTCGTATGTAGTCACTTG 57.161 39.130 0.00 0.00 0.00 3.16
1226 1278 4.514781 TGCTTCGTATGTAGTCACTTGT 57.485 40.909 0.00 0.00 0.00 3.16
1227 1279 4.878439 TGCTTCGTATGTAGTCACTTGTT 58.122 39.130 0.00 0.00 0.00 2.83
1228 1280 4.684242 TGCTTCGTATGTAGTCACTTGTTG 59.316 41.667 0.00 0.00 0.00 3.33
1229 1281 4.921515 GCTTCGTATGTAGTCACTTGTTGA 59.078 41.667 0.00 0.00 0.00 3.18
1230 1282 5.404366 GCTTCGTATGTAGTCACTTGTTGAA 59.596 40.000 0.00 0.00 35.39 2.69
1231 1283 6.073980 GCTTCGTATGTAGTCACTTGTTGAAA 60.074 38.462 0.00 0.00 35.39 2.69
1232 1284 7.360101 GCTTCGTATGTAGTCACTTGTTGAAAT 60.360 37.037 0.00 0.00 35.39 2.17
1233 1285 7.346208 TCGTATGTAGTCACTTGTTGAAATG 57.654 36.000 0.00 0.00 35.39 2.32
1234 1286 6.015504 CGTATGTAGTCACTTGTTGAAATGC 58.984 40.000 0.00 0.00 35.39 3.56
1235 1287 4.829064 TGTAGTCACTTGTTGAAATGCC 57.171 40.909 0.00 0.00 35.39 4.40
1236 1288 4.460263 TGTAGTCACTTGTTGAAATGCCT 58.540 39.130 0.00 0.00 35.39 4.75
1237 1289 5.616270 TGTAGTCACTTGTTGAAATGCCTA 58.384 37.500 0.00 0.00 35.39 3.93
1238 1290 5.700832 TGTAGTCACTTGTTGAAATGCCTAG 59.299 40.000 0.00 0.00 35.39 3.02
1239 1291 4.973168 AGTCACTTGTTGAAATGCCTAGA 58.027 39.130 0.00 0.00 35.39 2.43
1240 1292 5.376625 AGTCACTTGTTGAAATGCCTAGAA 58.623 37.500 0.00 0.00 35.39 2.10
1241 1293 5.827797 AGTCACTTGTTGAAATGCCTAGAAA 59.172 36.000 0.00 0.00 35.39 2.52
1242 1294 6.016777 AGTCACTTGTTGAAATGCCTAGAAAG 60.017 38.462 0.00 0.00 35.39 2.62
1243 1295 6.017109 GTCACTTGTTGAAATGCCTAGAAAGA 60.017 38.462 0.00 0.00 35.39 2.52
1244 1296 6.017109 TCACTTGTTGAAATGCCTAGAAAGAC 60.017 38.462 0.00 0.00 0.00 3.01
1245 1297 5.049405 ACTTGTTGAAATGCCTAGAAAGACG 60.049 40.000 0.00 0.00 0.00 4.18
1246 1298 3.751175 TGTTGAAATGCCTAGAAAGACGG 59.249 43.478 0.00 0.00 0.00 4.79
1247 1299 3.973206 TGAAATGCCTAGAAAGACGGA 57.027 42.857 0.00 0.00 0.00 4.69
1248 1300 4.280436 TGAAATGCCTAGAAAGACGGAA 57.720 40.909 0.00 0.00 0.00 4.30
1249 1301 4.000988 TGAAATGCCTAGAAAGACGGAAC 58.999 43.478 0.00 0.00 0.00 3.62
1314 1396 5.368256 AGAATCTGCATCTGTTGTTTCAC 57.632 39.130 0.00 0.00 0.00 3.18
1328 1411 0.538977 TTTCACGGAGGACTCGAGGT 60.539 55.000 18.41 1.94 0.00 3.85
1332 1415 0.602060 ACGGAGGACTCGAGGTTTTC 59.398 55.000 18.41 4.71 0.00 2.29
1342 1425 2.160063 GAGGTTTTCGAAGCCGGTC 58.840 57.895 1.90 0.00 36.79 4.79
1343 1426 0.601841 GAGGTTTTCGAAGCCGGTCA 60.602 55.000 1.90 0.00 36.79 4.02
1366 1449 8.585018 GTCATTCCCTGATTTCCTTTTTCTTTA 58.415 33.333 0.00 0.00 35.97 1.85
1421 1516 0.877649 CGAGACCGAGGCAATCCATG 60.878 60.000 0.00 0.00 38.22 3.66
1438 1533 2.355108 CCATGGTACTGGGACTGTTCTG 60.355 54.545 2.57 0.00 41.74 3.02
1469 1564 0.249322 TCCGCGGCTTACAGAATAGC 60.249 55.000 23.51 0.00 36.66 2.97
1483 1578 4.582656 ACAGAATAGCAGTAGCAGACTAGG 59.417 45.833 0.00 0.00 45.49 3.02
1611 1765 1.484038 TCAAGCAAACAAGGGCAAGT 58.516 45.000 0.00 0.00 0.00 3.16
1718 1873 2.596851 GGCAGCTCCAGAAGGACCA 61.597 63.158 0.00 0.00 39.61 4.02
1762 1917 0.599728 CGAGCTGGCCAAGATAGAGC 60.600 60.000 7.01 4.54 0.00 4.09
1764 1919 1.144936 GCTGGCCAAGATAGAGCGT 59.855 57.895 7.01 0.00 0.00 5.07
1802 1957 2.347490 GTCCGGTCACCACAGCAT 59.653 61.111 0.00 0.00 0.00 3.79
1890 2045 2.420022 CGTGGGTGAGGAAAATGATGTC 59.580 50.000 0.00 0.00 0.00 3.06
1893 2048 4.280677 GTGGGTGAGGAAAATGATGTCAAA 59.719 41.667 0.00 0.00 0.00 2.69
1934 2089 0.179078 CAGAGTGCAGAGCCCAGATC 60.179 60.000 0.00 0.00 0.00 2.75
2081 2236 5.574443 GCAGCTTGTCCATTTTGTTATCTTC 59.426 40.000 0.00 0.00 0.00 2.87
2229 2396 8.097038 TCGGTATACTTATTACCTCGTAGTCAT 58.903 37.037 2.25 0.00 0.00 3.06
2317 2484 4.686972 CTCGGCTTGTTCTCAGAATCATA 58.313 43.478 0.00 0.00 0.00 2.15
2560 2817 1.987807 ATGAGATGGAGTTGCCCGGG 61.988 60.000 19.09 19.09 34.97 5.73
2577 2834 1.675641 GGGTGCCAGGTACAAGCAG 60.676 63.158 10.22 0.00 39.21 4.24
2581 2838 0.035317 TGCCAGGTACAAGCAGACTG 59.965 55.000 0.00 0.00 33.78 3.51
2609 2866 2.031683 GGACGTACATAAGCATTGTGCC 59.968 50.000 0.00 0.00 46.52 5.01
2623 2880 4.697756 TGCCGGGAAGAAGCACCG 62.698 66.667 2.18 0.00 46.79 4.94
2638 2895 3.206150 AGCACCGGTCAAATATAGCAAG 58.794 45.455 2.59 0.00 0.00 4.01
2640 2897 3.002348 GCACCGGTCAAATATAGCAAGAC 59.998 47.826 2.59 0.00 0.00 3.01
2649 2906 7.041508 GGTCAAATATAGCAAGACTGGAATCAG 60.042 40.741 0.00 0.00 46.10 2.90
2650 2907 6.994496 TCAAATATAGCAAGACTGGAATCAGG 59.006 38.462 0.00 0.00 44.99 3.86
2667 2924 3.827634 GCATTAAGGCCCTCGGTG 58.172 61.111 0.00 0.00 0.00 4.94
2668 2925 1.823899 GCATTAAGGCCCTCGGTGG 60.824 63.158 0.00 0.00 0.00 4.61
2676 2933 2.982130 CCCTCGGTGGTCAGAAGG 59.018 66.667 0.00 0.00 0.00 3.46
2677 2934 2.266055 CCTCGGTGGTCAGAAGGC 59.734 66.667 0.00 0.00 0.00 4.35
2678 2935 2.583441 CCTCGGTGGTCAGAAGGCA 61.583 63.158 0.00 0.00 0.00 4.75
2679 2936 1.371183 CTCGGTGGTCAGAAGGCAA 59.629 57.895 0.00 0.00 0.00 4.52
2680 2937 0.250295 CTCGGTGGTCAGAAGGCAAA 60.250 55.000 0.00 0.00 0.00 3.68
2681 2938 0.181587 TCGGTGGTCAGAAGGCAAAA 59.818 50.000 0.00 0.00 0.00 2.44
2682 2939 1.028905 CGGTGGTCAGAAGGCAAAAA 58.971 50.000 0.00 0.00 0.00 1.94
2700 2957 3.998099 AAAAAGCAGCAGAACCTTCTC 57.002 42.857 0.00 0.00 34.74 2.87
2701 2958 2.947127 AAAGCAGCAGAACCTTCTCT 57.053 45.000 0.00 0.00 34.74 3.10
2702 2959 2.947127 AAGCAGCAGAACCTTCTCTT 57.053 45.000 0.00 0.00 34.74 2.85
2703 2960 2.181954 AGCAGCAGAACCTTCTCTTG 57.818 50.000 0.00 0.00 34.74 3.02
2704 2961 1.163554 GCAGCAGAACCTTCTCTTGG 58.836 55.000 0.00 0.00 34.74 3.61
2705 2962 1.544314 GCAGCAGAACCTTCTCTTGGT 60.544 52.381 0.00 0.00 39.91 3.67
2706 2963 2.289694 GCAGCAGAACCTTCTCTTGGTA 60.290 50.000 0.00 0.00 36.69 3.25
2707 2964 3.330267 CAGCAGAACCTTCTCTTGGTAC 58.670 50.000 0.00 0.00 36.69 3.34
2708 2965 2.972713 AGCAGAACCTTCTCTTGGTACA 59.027 45.455 0.00 0.00 36.69 2.90
2709 2966 3.584848 AGCAGAACCTTCTCTTGGTACAT 59.415 43.478 0.00 0.00 36.69 2.29
2710 2967 4.777896 AGCAGAACCTTCTCTTGGTACATA 59.222 41.667 0.00 0.00 36.69 2.29
2711 2968 5.426833 AGCAGAACCTTCTCTTGGTACATAT 59.573 40.000 0.00 0.00 36.69 1.78
2712 2969 5.755861 GCAGAACCTTCTCTTGGTACATATC 59.244 44.000 0.00 0.00 36.69 1.63
2713 2970 6.630413 GCAGAACCTTCTCTTGGTACATATCA 60.630 42.308 0.00 0.00 36.69 2.15
2714 2971 6.983307 CAGAACCTTCTCTTGGTACATATCAG 59.017 42.308 0.00 0.00 36.69 2.90
2715 2972 6.897966 AGAACCTTCTCTTGGTACATATCAGA 59.102 38.462 0.00 0.00 36.69 3.27
2716 2973 7.566879 AGAACCTTCTCTTGGTACATATCAGAT 59.433 37.037 0.00 0.00 36.69 2.90
2717 2974 7.060383 ACCTTCTCTTGGTACATATCAGATG 57.940 40.000 0.00 0.00 39.30 2.90
2718 2975 6.841229 ACCTTCTCTTGGTACATATCAGATGA 59.159 38.462 0.00 0.00 39.30 2.92
2719 2976 7.345653 ACCTTCTCTTGGTACATATCAGATGAA 59.654 37.037 0.00 0.00 39.30 2.57
2720 2977 8.206867 CCTTCTCTTGGTACATATCAGATGAAA 58.793 37.037 0.00 0.00 39.30 2.69
2721 2978 9.605275 CTTCTCTTGGTACATATCAGATGAAAA 57.395 33.333 0.00 0.00 39.30 2.29
2722 2979 8.948631 TCTCTTGGTACATATCAGATGAAAAC 57.051 34.615 0.00 0.00 39.30 2.43
2723 2980 8.539544 TCTCTTGGTACATATCAGATGAAAACA 58.460 33.333 0.00 0.00 39.30 2.83
2724 2981 9.334947 CTCTTGGTACATATCAGATGAAAACAT 57.665 33.333 0.00 0.00 39.30 2.71
2725 2982 9.330063 TCTTGGTACATATCAGATGAAAACATC 57.670 33.333 0.00 0.00 39.30 3.06
2726 2983 8.450578 TTGGTACATATCAGATGAAAACATCC 57.549 34.615 0.00 0.00 39.30 3.51
2727 2984 7.805163 TGGTACATATCAGATGAAAACATCCT 58.195 34.615 0.00 0.00 32.22 3.24
2728 2985 8.274322 TGGTACATATCAGATGAAAACATCCTT 58.726 33.333 0.00 0.00 32.22 3.36
2729 2986 8.562892 GGTACATATCAGATGAAAACATCCTTG 58.437 37.037 0.00 0.00 32.22 3.61
2730 2987 9.330063 GTACATATCAGATGAAAACATCCTTGA 57.670 33.333 0.00 0.00 32.22 3.02
2731 2988 8.991783 ACATATCAGATGAAAACATCCTTGAT 57.008 30.769 14.53 14.53 33.72 2.57
2736 2993 9.863650 ATCAGATGAAAACATCCTTGATAAGAT 57.136 29.630 10.83 0.00 29.98 2.40
2737 2994 9.117183 TCAGATGAAAACATCCTTGATAAGATG 57.883 33.333 0.00 0.00 32.22 2.90
2738 2995 8.350722 CAGATGAAAACATCCTTGATAAGATGG 58.649 37.037 0.00 0.00 32.22 3.51
2739 2996 8.277197 AGATGAAAACATCCTTGATAAGATGGA 58.723 33.333 0.00 0.00 32.22 3.41
2740 2997 7.870509 TGAAAACATCCTTGATAAGATGGAG 57.129 36.000 5.12 0.00 31.59 3.86
2741 2998 6.319658 TGAAAACATCCTTGATAAGATGGAGC 59.680 38.462 5.12 0.00 31.59 4.70
2742 2999 5.643421 AACATCCTTGATAAGATGGAGCT 57.357 39.130 5.12 0.00 31.59 4.09
2743 3000 4.970711 ACATCCTTGATAAGATGGAGCTG 58.029 43.478 0.00 0.00 31.59 4.24
2744 3001 3.482156 TCCTTGATAAGATGGAGCTGC 57.518 47.619 0.00 0.00 0.00 5.25
2745 3002 2.773661 TCCTTGATAAGATGGAGCTGCA 59.226 45.455 11.44 11.44 0.00 4.41
2746 3003 3.139850 CCTTGATAAGATGGAGCTGCAG 58.860 50.000 14.98 10.11 0.00 4.41
2747 3004 2.251409 TGATAAGATGGAGCTGCAGC 57.749 50.000 31.53 31.53 42.49 5.25
2748 3005 1.487558 TGATAAGATGGAGCTGCAGCA 59.512 47.619 38.24 20.45 45.16 4.41
2749 3006 1.872313 GATAAGATGGAGCTGCAGCAC 59.128 52.381 38.24 32.03 45.16 4.40
2761 3018 4.980702 CAGCACCTGCCAGGCCAA 62.981 66.667 11.63 0.00 39.63 4.52
2762 3019 4.982701 AGCACCTGCCAGGCCAAC 62.983 66.667 11.63 0.00 39.63 3.77
2766 3023 4.028490 CCTGCCAGGCCAACGGTA 62.028 66.667 9.64 0.21 0.00 4.02
2767 3024 2.746277 CTGCCAGGCCAACGGTAC 60.746 66.667 9.64 0.00 0.00 3.34
2768 3025 3.545124 CTGCCAGGCCAACGGTACA 62.545 63.158 9.64 0.00 0.00 2.90
2769 3026 2.045340 GCCAGGCCAACGGTACAT 60.045 61.111 5.01 0.00 0.00 2.29
2770 3027 2.406616 GCCAGGCCAACGGTACATG 61.407 63.158 5.01 0.00 0.00 3.21
2771 3028 2.406616 CCAGGCCAACGGTACATGC 61.407 63.158 5.01 0.00 0.00 4.06
2772 3029 2.045340 AGGCCAACGGTACATGCC 60.045 61.111 5.01 0.00 42.48 4.40
2773 3030 2.360600 GGCCAACGGTACATGCCA 60.361 61.111 0.00 0.00 41.76 4.92
2774 3031 2.406616 GGCCAACGGTACATGCCAG 61.407 63.158 0.00 0.00 41.76 4.85
2775 3032 1.674322 GCCAACGGTACATGCCAGT 60.674 57.895 0.00 0.00 0.00 4.00
2776 3033 1.644786 GCCAACGGTACATGCCAGTC 61.645 60.000 0.00 0.00 0.00 3.51
2777 3034 0.321210 CCAACGGTACATGCCAGTCA 60.321 55.000 0.00 0.00 0.00 3.41
2778 3035 1.078709 CAACGGTACATGCCAGTCAG 58.921 55.000 0.00 0.00 0.00 3.51
2779 3036 0.973632 AACGGTACATGCCAGTCAGA 59.026 50.000 0.00 0.00 0.00 3.27
2780 3037 0.246635 ACGGTACATGCCAGTCAGAC 59.753 55.000 0.00 0.00 0.00 3.51
2781 3038 0.532573 CGGTACATGCCAGTCAGACT 59.467 55.000 0.00 0.00 0.00 3.24
2782 3039 1.066858 CGGTACATGCCAGTCAGACTT 60.067 52.381 0.00 0.00 0.00 3.01
2783 3040 2.350522 GGTACATGCCAGTCAGACTTG 58.649 52.381 0.00 0.00 0.00 3.16
2784 3041 2.350522 GTACATGCCAGTCAGACTTGG 58.649 52.381 0.00 7.45 0.00 3.61
2785 3042 1.059098 ACATGCCAGTCAGACTTGGA 58.941 50.000 18.30 10.13 0.00 3.53
2786 3043 1.002888 ACATGCCAGTCAGACTTGGAG 59.997 52.381 18.30 11.40 0.00 3.86
2787 3044 0.617413 ATGCCAGTCAGACTTGGAGG 59.383 55.000 18.30 10.67 0.00 4.30
2788 3045 0.471780 TGCCAGTCAGACTTGGAGGA 60.472 55.000 18.30 1.24 0.00 3.71
2789 3046 0.248843 GCCAGTCAGACTTGGAGGAG 59.751 60.000 18.30 0.20 0.00 3.69
2790 3047 0.248843 CCAGTCAGACTTGGAGGAGC 59.751 60.000 0.00 0.00 0.00 4.70
2791 3048 0.972134 CAGTCAGACTTGGAGGAGCA 59.028 55.000 0.00 0.00 0.00 4.26
2792 3049 0.972883 AGTCAGACTTGGAGGAGCAC 59.027 55.000 0.00 0.00 0.00 4.40
2793 3050 0.036858 GTCAGACTTGGAGGAGCACC 60.037 60.000 0.00 0.00 0.00 5.01
2802 3059 3.580084 AGGAGCACCTCAAAGGCA 58.420 55.556 0.00 0.00 44.13 4.75
2803 3060 1.073897 AGGAGCACCTCAAAGGCAC 59.926 57.895 0.00 0.00 44.13 5.01
2804 3061 1.228245 GGAGCACCTCAAAGGCACA 60.228 57.895 0.00 0.00 39.63 4.57
2805 3062 0.610232 GGAGCACCTCAAAGGCACAT 60.610 55.000 0.00 0.00 39.63 3.21
2806 3063 0.524862 GAGCACCTCAAAGGCACATG 59.475 55.000 0.00 0.00 39.63 3.21
2807 3064 0.896940 AGCACCTCAAAGGCACATGG 60.897 55.000 0.00 0.00 39.63 3.66
2808 3065 1.588082 CACCTCAAAGGCACATGGC 59.412 57.895 0.00 0.00 39.63 4.40
2819 3076 2.129823 GCACATGGCATCAGCATAAC 57.870 50.000 13.97 0.00 44.61 1.89
2820 3077 1.406180 GCACATGGCATCAGCATAACA 59.594 47.619 13.97 0.00 44.61 2.41
2821 3078 2.035449 GCACATGGCATCAGCATAACAT 59.965 45.455 13.97 0.00 44.61 2.71
2822 3079 3.855895 GCACATGGCATCAGCATAACATC 60.856 47.826 13.97 0.00 44.61 3.06
2823 3080 3.316868 CACATGGCATCAGCATAACATCA 59.683 43.478 0.00 0.00 44.61 3.07
2824 3081 3.955551 ACATGGCATCAGCATAACATCAA 59.044 39.130 0.00 0.00 44.61 2.57
2825 3082 4.587262 ACATGGCATCAGCATAACATCAAT 59.413 37.500 0.00 0.00 44.61 2.57
2826 3083 4.577834 TGGCATCAGCATAACATCAATG 57.422 40.909 0.00 0.00 44.61 2.82
2846 3103 2.947448 CCTTATGCAAAGGAGGCAAC 57.053 50.000 17.72 0.00 45.60 4.17
2847 3104 2.170166 CCTTATGCAAAGGAGGCAACA 58.830 47.619 17.72 0.00 45.60 3.33
2848 3105 2.562298 CCTTATGCAAAGGAGGCAACAA 59.438 45.455 17.72 0.00 45.60 2.83
2849 3106 3.578688 CTTATGCAAAGGAGGCAACAAC 58.421 45.455 0.00 0.00 45.60 3.32
2850 3107 0.314935 ATGCAAAGGAGGCAACAACG 59.685 50.000 0.00 0.00 45.60 4.10
2851 3108 0.749818 TGCAAAGGAGGCAACAACGA 60.750 50.000 0.00 0.00 38.54 3.85
2852 3109 0.598065 GCAAAGGAGGCAACAACGAT 59.402 50.000 0.00 0.00 41.41 3.73
2853 3110 1.810151 GCAAAGGAGGCAACAACGATA 59.190 47.619 0.00 0.00 41.41 2.92
2854 3111 2.423538 GCAAAGGAGGCAACAACGATAT 59.576 45.455 0.00 0.00 41.41 1.63
2855 3112 3.119495 GCAAAGGAGGCAACAACGATATT 60.119 43.478 0.00 0.00 41.41 1.28
2856 3113 4.414852 CAAAGGAGGCAACAACGATATTG 58.585 43.478 0.00 0.00 41.41 1.90
2857 3114 3.350219 AGGAGGCAACAACGATATTGT 57.650 42.857 0.00 0.00 41.41 2.71
2858 3115 3.009723 AGGAGGCAACAACGATATTGTG 58.990 45.455 0.00 0.00 41.41 3.33
2859 3116 2.097466 GGAGGCAACAACGATATTGTGG 59.903 50.000 0.00 0.00 41.41 4.17
2860 3117 3.006940 GAGGCAACAACGATATTGTGGA 58.993 45.455 4.33 0.00 41.41 4.02
2861 3118 3.009723 AGGCAACAACGATATTGTGGAG 58.990 45.455 4.33 0.00 41.41 3.86
2862 3119 3.006940 GGCAACAACGATATTGTGGAGA 58.993 45.455 4.33 0.00 32.22 3.71
2863 3120 3.438781 GGCAACAACGATATTGTGGAGAA 59.561 43.478 4.33 0.00 32.22 2.87
2864 3121 4.403453 GCAACAACGATATTGTGGAGAAC 58.597 43.478 4.33 0.00 32.22 3.01
2865 3122 4.083537 GCAACAACGATATTGTGGAGAACA 60.084 41.667 4.33 0.00 36.85 3.18
2866 3123 5.391950 GCAACAACGATATTGTGGAGAACAT 60.392 40.000 4.33 0.00 38.99 2.71
2867 3124 6.611381 CAACAACGATATTGTGGAGAACATT 58.389 36.000 4.33 0.00 38.99 2.71
2868 3125 6.817765 ACAACGATATTGTGGAGAACATTT 57.182 33.333 4.33 0.00 38.99 2.32
2869 3126 6.842163 ACAACGATATTGTGGAGAACATTTC 58.158 36.000 4.33 0.00 38.99 2.17
2870 3127 6.429692 ACAACGATATTGTGGAGAACATTTCA 59.570 34.615 4.33 0.00 38.99 2.69
2871 3128 6.422776 ACGATATTGTGGAGAACATTTCAC 57.577 37.500 0.00 0.00 38.99 3.18
2872 3129 6.173339 ACGATATTGTGGAGAACATTTCACT 58.827 36.000 0.00 0.00 38.99 3.41
2873 3130 6.092670 ACGATATTGTGGAGAACATTTCACTG 59.907 38.462 0.00 0.00 38.99 3.66
2874 3131 3.988379 TTGTGGAGAACATTTCACTGC 57.012 42.857 0.00 0.00 38.99 4.40
2875 3132 2.929641 TGTGGAGAACATTTCACTGCA 58.070 42.857 0.00 0.00 32.36 4.41
2876 3133 3.489355 TGTGGAGAACATTTCACTGCAT 58.511 40.909 0.00 0.00 34.87 3.96
6058 8538 2.560105 GCAGAAAGCATCAAAGGAAGGT 59.440 45.455 0.00 0.00 44.79 3.50
6059 8539 3.006217 GCAGAAAGCATCAAAGGAAGGTT 59.994 43.478 0.00 0.00 44.79 3.50
6071 8551 1.280421 AGGAAGGTTCAGGTGATGCTC 59.720 52.381 0.00 0.00 0.00 4.26
6094 8574 2.739913 CCAGAGGCGATTTGTCGTAAAA 59.260 45.455 0.00 0.00 35.26 1.52
6113 8593 0.892358 AAGGTAGTGTCGAGACCGCA 60.892 55.000 9.40 0.00 38.35 5.69
6123 8603 1.671328 TCGAGACCGCAGATGAACTAG 59.329 52.381 0.00 0.00 35.37 2.57
6251 8745 0.025898 CGATCTGCAGTGCAACATCG 59.974 55.000 30.08 30.08 41.53 3.84
6254 8748 1.208358 CTGCAGTGCAACATCGGTG 59.792 57.895 20.22 0.34 41.43 4.94
6259 8753 0.179032 AGTGCAACATCGGTGGAACA 60.179 50.000 0.00 0.00 41.43 3.18
6432 8936 5.527582 ACTGCTGACTGGTTTACTGTTTTAG 59.472 40.000 0.00 0.00 0.00 1.85
6433 8937 4.819630 TGCTGACTGGTTTACTGTTTTAGG 59.180 41.667 0.00 0.00 0.00 2.69
6434 8938 5.061179 GCTGACTGGTTTACTGTTTTAGGA 58.939 41.667 0.00 0.00 0.00 2.94
6435 8939 5.179555 GCTGACTGGTTTACTGTTTTAGGAG 59.820 44.000 0.00 0.00 0.00 3.69
6436 8940 6.243216 TGACTGGTTTACTGTTTTAGGAGT 57.757 37.500 0.00 0.00 0.00 3.85
6437 8941 7.364149 TGACTGGTTTACTGTTTTAGGAGTA 57.636 36.000 0.00 0.00 0.00 2.59
6464 8968 6.963083 TTCAATGATTCATGCCATGTGATA 57.037 33.333 4.31 0.00 0.00 2.15
6536 9041 5.841783 AGATTAGAAGATTACCCAGGACCTC 59.158 44.000 0.00 0.00 0.00 3.85
6585 9090 5.716094 TCTGCACGTCTAAAATGCTACTAA 58.284 37.500 0.00 0.00 40.13 2.24
6658 9165 5.317733 AGACGTCTAGGAACAGAAGATTG 57.682 43.478 18.46 0.00 0.00 2.67
6666 9173 4.837972 AGGAACAGAAGATTGTAAGGCTC 58.162 43.478 0.00 0.00 0.00 4.70
6710 9217 5.404096 TCATTAACATGCACTGCAATGAAG 58.596 37.500 8.03 0.00 43.62 3.02
6711 9218 2.736144 AACATGCACTGCAATGAAGG 57.264 45.000 8.03 0.00 43.62 3.46
6712 9219 1.913778 ACATGCACTGCAATGAAGGA 58.086 45.000 8.03 0.00 43.62 3.36
6732 9239 3.663176 CACCTGGCAGTTGGCACG 61.663 66.667 14.43 3.89 46.12 5.34
6759 9266 9.217278 CTCCTGAATATTCACAGAAATATGAGG 57.783 37.037 14.23 9.36 35.59 3.86
6888 9398 8.408601 ACATTGCTTCTAAATCATCCATAACAC 58.591 33.333 0.00 0.00 0.00 3.32
6891 9401 5.007626 GCTTCTAAATCATCCATAACACGCA 59.992 40.000 0.00 0.00 0.00 5.24
6902 9412 6.078202 TCCATAACACGCATCAAAAGAAAA 57.922 33.333 0.00 0.00 0.00 2.29
6919 9429 5.139435 AGAAAAAGCATAGGCAAAGAACC 57.861 39.130 0.67 0.00 44.61 3.62
6922 9432 3.343941 AAGCATAGGCAAAGAACCGTA 57.656 42.857 0.67 0.00 44.61 4.02
7013 9524 2.024941 TCTCAGTCCATGCCTCTACAGA 60.025 50.000 0.00 0.00 0.00 3.41
7074 9585 6.012658 TCAATTGTTCATTTACAGAGCACC 57.987 37.500 5.13 0.00 0.00 5.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
67 69 3.683365 TCTGCTTGCAATCACACTAGA 57.317 42.857 0.00 0.00 0.00 2.43
124 131 4.522405 GCCATGTACCATGCCAAACATATA 59.478 41.667 0.00 0.00 36.64 0.86
234 242 3.581332 ACATGTCCGGGTAAAAGAGAGAA 59.419 43.478 0.00 0.00 0.00 2.87
275 286 2.482336 CAGTTGCCATGTAACGCTACAA 59.518 45.455 2.28 0.00 41.36 2.41
395 407 4.039245 TCTCAGGTCAAAGTTCGAGATTGT 59.961 41.667 6.75 0.00 0.00 2.71
402 414 1.734465 GCCATCTCAGGTCAAAGTTCG 59.266 52.381 0.00 0.00 0.00 3.95
434 446 1.216977 CTACGGTTGCCATGTCGGA 59.783 57.895 0.00 0.00 36.56 4.55
435 447 0.672401 AACTACGGTTGCCATGTCGG 60.672 55.000 0.00 0.00 33.96 4.79
476 489 1.790755 TCCTCGTCCATGTTCGTTTG 58.209 50.000 6.65 0.88 0.00 2.93
548 562 1.378250 CCTCGTACCTCGTGGTCCT 60.378 63.158 13.38 0.00 44.78 3.85
688 706 1.627297 GGGTGCCTAAGAGGACCAGG 61.627 65.000 4.58 0.00 37.67 4.45
743 761 2.668212 GCCGCTAACTGCCACACA 60.668 61.111 0.00 0.00 38.78 3.72
803 821 8.179615 GCGGTAGTACTGCTGTTTATTTATTTT 58.820 33.333 24.15 0.00 46.62 1.82
804 822 7.691158 GCGGTAGTACTGCTGTTTATTTATTT 58.309 34.615 24.15 0.00 46.62 1.40
818 836 2.165301 GCGGCTTGCGGTAGTACTG 61.165 63.158 5.39 4.63 0.00 2.74
819 837 2.183555 GCGGCTTGCGGTAGTACT 59.816 61.111 0.00 0.00 0.00 2.73
838 856 3.849951 CCGGTCGAGATGGTGGGG 61.850 72.222 0.00 0.00 0.00 4.96
861 879 0.882927 TTCGAGTGCTCCGTTTTGGG 60.883 55.000 0.00 0.00 38.76 4.12
862 880 0.512952 CTTCGAGTGCTCCGTTTTGG 59.487 55.000 0.00 0.00 40.09 3.28
863 881 1.217882 ACTTCGAGTGCTCCGTTTTG 58.782 50.000 0.00 0.00 0.00 2.44
866 884 0.319641 GGAACTTCGAGTGCTCCGTT 60.320 55.000 0.00 0.00 0.00 4.44
867 885 1.289380 GGAACTTCGAGTGCTCCGT 59.711 57.895 0.00 0.00 0.00 4.69
868 886 1.446272 GGGAACTTCGAGTGCTCCG 60.446 63.158 4.58 0.00 28.10 4.63
869 887 1.079057 GGGGAACTTCGAGTGCTCC 60.079 63.158 0.00 0.00 37.20 4.70
870 888 1.446272 CGGGGAACTTCGAGTGCTC 60.446 63.158 0.00 0.00 0.00 4.26
871 889 1.755393 AACGGGGAACTTCGAGTGCT 61.755 55.000 0.00 0.00 0.00 4.40
872 890 1.289800 GAACGGGGAACTTCGAGTGC 61.290 60.000 0.00 0.00 0.00 4.40
873 891 0.669625 GGAACGGGGAACTTCGAGTG 60.670 60.000 0.00 0.00 0.00 3.51
874 892 1.670015 GGAACGGGGAACTTCGAGT 59.330 57.895 0.00 0.00 0.00 4.18
875 893 1.079336 GGGAACGGGGAACTTCGAG 60.079 63.158 0.00 0.00 0.00 4.04
876 894 2.586293 GGGGAACGGGGAACTTCGA 61.586 63.158 0.00 0.00 0.00 3.71
877 895 2.046604 GGGGAACGGGGAACTTCG 60.047 66.667 0.00 0.00 0.00 3.79
878 896 1.298993 GAGGGGAACGGGGAACTTC 59.701 63.158 0.00 0.00 0.00 3.01
879 897 2.590114 CGAGGGGAACGGGGAACTT 61.590 63.158 0.00 0.00 0.00 2.66
880 898 3.001406 CGAGGGGAACGGGGAACT 61.001 66.667 0.00 0.00 0.00 3.01
881 899 4.772687 GCGAGGGGAACGGGGAAC 62.773 72.222 0.00 0.00 0.00 3.62
883 901 2.957902 ATATGCGAGGGGAACGGGGA 62.958 60.000 0.00 0.00 0.00 4.81
884 902 2.052047 AATATGCGAGGGGAACGGGG 62.052 60.000 0.00 0.00 0.00 5.73
885 903 0.179029 AAATATGCGAGGGGAACGGG 60.179 55.000 0.00 0.00 0.00 5.28
886 904 0.944386 CAAATATGCGAGGGGAACGG 59.056 55.000 0.00 0.00 0.00 4.44
887 905 0.307760 GCAAATATGCGAGGGGAACG 59.692 55.000 0.00 0.00 43.83 3.95
961 996 2.125350 GGCGACAGGAAGCAGAGG 60.125 66.667 0.00 0.00 34.54 3.69
962 997 2.507992 CGGCGACAGGAAGCAGAG 60.508 66.667 0.00 0.00 34.54 3.35
1091 1143 2.185387 GGGAGTAGTTGCTTCCTGGTA 58.815 52.381 0.00 0.00 31.30 3.25
1092 1144 0.984995 GGGAGTAGTTGCTTCCTGGT 59.015 55.000 0.00 0.00 31.30 4.00
1093 1145 1.208293 GAGGGAGTAGTTGCTTCCTGG 59.792 57.143 1.36 0.00 44.34 4.45
1105 1157 6.384886 ACAAATATTTAGGAACGGAGGGAGTA 59.615 38.462 0.00 0.00 0.00 2.59
1106 1158 5.191124 ACAAATATTTAGGAACGGAGGGAGT 59.809 40.000 0.00 0.00 0.00 3.85
1107 1159 5.681639 ACAAATATTTAGGAACGGAGGGAG 58.318 41.667 0.00 0.00 0.00 4.30
1108 1160 5.427481 AGACAAATATTTAGGAACGGAGGGA 59.573 40.000 0.00 0.00 0.00 4.20
1109 1161 5.681639 AGACAAATATTTAGGAACGGAGGG 58.318 41.667 0.00 0.00 0.00 4.30
1110 1162 7.553044 AGAAAGACAAATATTTAGGAACGGAGG 59.447 37.037 0.00 0.00 0.00 4.30
1111 1163 8.494016 AGAAAGACAAATATTTAGGAACGGAG 57.506 34.615 0.00 0.00 0.00 4.63
1112 1164 9.595823 CTAGAAAGACAAATATTTAGGAACGGA 57.404 33.333 0.00 0.00 0.00 4.69
1113 1165 9.595823 TCTAGAAAGACAAATATTTAGGAACGG 57.404 33.333 0.00 0.00 0.00 4.44
1187 1239 6.017933 CGAAGCAAAATGAGTGAATCTACAC 58.982 40.000 0.00 0.00 40.60 2.90
1188 1240 5.700832 ACGAAGCAAAATGAGTGAATCTACA 59.299 36.000 0.00 0.00 0.00 2.74
1189 1241 6.170675 ACGAAGCAAAATGAGTGAATCTAC 57.829 37.500 0.00 0.00 0.00 2.59
1190 1242 7.549134 ACATACGAAGCAAAATGAGTGAATCTA 59.451 33.333 0.00 0.00 0.00 1.98
1191 1243 6.372659 ACATACGAAGCAAAATGAGTGAATCT 59.627 34.615 0.00 0.00 0.00 2.40
1192 1244 6.546395 ACATACGAAGCAAAATGAGTGAATC 58.454 36.000 0.00 0.00 0.00 2.52
1193 1245 6.500684 ACATACGAAGCAAAATGAGTGAAT 57.499 33.333 0.00 0.00 0.00 2.57
1194 1246 5.940192 ACATACGAAGCAAAATGAGTGAA 57.060 34.783 0.00 0.00 0.00 3.18
1195 1247 6.163476 ACTACATACGAAGCAAAATGAGTGA 58.837 36.000 0.00 0.00 0.00 3.41
1196 1248 6.090763 TGACTACATACGAAGCAAAATGAGTG 59.909 38.462 0.00 0.00 0.00 3.51
1197 1249 6.090898 GTGACTACATACGAAGCAAAATGAGT 59.909 38.462 0.00 0.00 0.00 3.41
1198 1250 6.311445 AGTGACTACATACGAAGCAAAATGAG 59.689 38.462 0.00 0.00 0.00 2.90
1199 1251 6.163476 AGTGACTACATACGAAGCAAAATGA 58.837 36.000 0.00 0.00 0.00 2.57
1200 1252 6.408858 AGTGACTACATACGAAGCAAAATG 57.591 37.500 0.00 0.00 0.00 2.32
1201 1253 6.426937 ACAAGTGACTACATACGAAGCAAAAT 59.573 34.615 0.00 0.00 0.00 1.82
1202 1254 5.756347 ACAAGTGACTACATACGAAGCAAAA 59.244 36.000 0.00 0.00 0.00 2.44
1203 1255 5.294356 ACAAGTGACTACATACGAAGCAAA 58.706 37.500 0.00 0.00 0.00 3.68
1204 1256 4.878439 ACAAGTGACTACATACGAAGCAA 58.122 39.130 0.00 0.00 0.00 3.91
1205 1257 4.514781 ACAAGTGACTACATACGAAGCA 57.485 40.909 0.00 0.00 0.00 3.91
1206 1258 4.921515 TCAACAAGTGACTACATACGAAGC 59.078 41.667 0.00 0.00 0.00 3.86
1207 1259 7.402811 TTTCAACAAGTGACTACATACGAAG 57.597 36.000 0.00 0.00 35.39 3.79
1208 1260 7.570507 GCATTTCAACAAGTGACTACATACGAA 60.571 37.037 0.00 0.00 35.39 3.85
1209 1261 6.128661 GCATTTCAACAAGTGACTACATACGA 60.129 38.462 0.00 0.00 35.39 3.43
1210 1262 6.015504 GCATTTCAACAAGTGACTACATACG 58.984 40.000 0.00 0.00 35.39 3.06
1211 1263 6.149474 AGGCATTTCAACAAGTGACTACATAC 59.851 38.462 0.00 0.00 35.84 2.39
1212 1264 6.237901 AGGCATTTCAACAAGTGACTACATA 58.762 36.000 0.00 0.00 35.84 2.29
1213 1265 5.072741 AGGCATTTCAACAAGTGACTACAT 58.927 37.500 0.00 0.00 35.84 2.29
1214 1266 4.460263 AGGCATTTCAACAAGTGACTACA 58.540 39.130 0.00 0.00 35.84 2.74
1215 1267 5.932303 TCTAGGCATTTCAACAAGTGACTAC 59.068 40.000 0.00 0.00 38.51 2.73
1216 1268 6.109156 TCTAGGCATTTCAACAAGTGACTA 57.891 37.500 0.00 0.00 38.51 2.59
1217 1269 4.973168 TCTAGGCATTTCAACAAGTGACT 58.027 39.130 0.00 0.00 40.60 3.41
1218 1270 5.689383 TTCTAGGCATTTCAACAAGTGAC 57.311 39.130 0.00 0.00 35.39 3.67
1219 1271 6.017109 GTCTTTCTAGGCATTTCAACAAGTGA 60.017 38.462 0.00 0.00 0.00 3.41
1220 1272 6.145535 GTCTTTCTAGGCATTTCAACAAGTG 58.854 40.000 0.00 0.00 0.00 3.16
1221 1273 5.049405 CGTCTTTCTAGGCATTTCAACAAGT 60.049 40.000 0.00 0.00 0.00 3.16
1222 1274 5.385617 CGTCTTTCTAGGCATTTCAACAAG 58.614 41.667 0.00 0.00 0.00 3.16
1223 1275 4.215399 CCGTCTTTCTAGGCATTTCAACAA 59.785 41.667 0.00 0.00 0.00 2.83
1224 1276 3.751175 CCGTCTTTCTAGGCATTTCAACA 59.249 43.478 0.00 0.00 0.00 3.33
1225 1277 4.000988 TCCGTCTTTCTAGGCATTTCAAC 58.999 43.478 0.00 0.00 0.00 3.18
1226 1278 4.280436 TCCGTCTTTCTAGGCATTTCAA 57.720 40.909 0.00 0.00 0.00 2.69
1227 1279 3.973206 TCCGTCTTTCTAGGCATTTCA 57.027 42.857 0.00 0.00 0.00 2.69
1228 1280 3.062234 CGTTCCGTCTTTCTAGGCATTTC 59.938 47.826 0.00 0.00 0.00 2.17
1229 1281 3.000727 CGTTCCGTCTTTCTAGGCATTT 58.999 45.455 0.00 0.00 0.00 2.32
1230 1282 2.618053 CGTTCCGTCTTTCTAGGCATT 58.382 47.619 0.00 0.00 0.00 3.56
1231 1283 1.134788 CCGTTCCGTCTTTCTAGGCAT 60.135 52.381 0.00 0.00 0.00 4.40
1232 1284 0.245539 CCGTTCCGTCTTTCTAGGCA 59.754 55.000 0.00 0.00 0.00 4.75
1233 1285 0.529378 TCCGTTCCGTCTTTCTAGGC 59.471 55.000 0.00 0.00 0.00 3.93
1234 1286 1.134560 CCTCCGTTCCGTCTTTCTAGG 59.865 57.143 0.00 0.00 0.00 3.02
1235 1287 1.134560 CCCTCCGTTCCGTCTTTCTAG 59.865 57.143 0.00 0.00 0.00 2.43
1236 1288 1.180029 CCCTCCGTTCCGTCTTTCTA 58.820 55.000 0.00 0.00 0.00 2.10
1237 1289 0.541296 TCCCTCCGTTCCGTCTTTCT 60.541 55.000 0.00 0.00 0.00 2.52
1238 1290 0.108756 CTCCCTCCGTTCCGTCTTTC 60.109 60.000 0.00 0.00 0.00 2.62
1239 1291 0.830866 ACTCCCTCCGTTCCGTCTTT 60.831 55.000 0.00 0.00 0.00 2.52
1240 1292 0.038744 TACTCCCTCCGTTCCGTCTT 59.961 55.000 0.00 0.00 0.00 3.01
1241 1293 0.394080 CTACTCCCTCCGTTCCGTCT 60.394 60.000 0.00 0.00 0.00 4.18
1242 1294 0.393537 TCTACTCCCTCCGTTCCGTC 60.394 60.000 0.00 0.00 0.00 4.79
1243 1295 0.038744 TTCTACTCCCTCCGTTCCGT 59.961 55.000 0.00 0.00 0.00 4.69
1244 1296 1.337387 GATTCTACTCCCTCCGTTCCG 59.663 57.143 0.00 0.00 0.00 4.30
1245 1297 2.362717 CAGATTCTACTCCCTCCGTTCC 59.637 54.545 0.00 0.00 0.00 3.62
1246 1298 3.067040 GTCAGATTCTACTCCCTCCGTTC 59.933 52.174 0.00 0.00 0.00 3.95
1247 1299 3.025262 GTCAGATTCTACTCCCTCCGTT 58.975 50.000 0.00 0.00 0.00 4.44
1248 1300 2.242708 AGTCAGATTCTACTCCCTCCGT 59.757 50.000 0.00 0.00 0.00 4.69
1249 1301 2.621055 CAGTCAGATTCTACTCCCTCCG 59.379 54.545 0.00 0.00 0.00 4.63
1250 1302 2.364002 GCAGTCAGATTCTACTCCCTCC 59.636 54.545 0.00 0.00 0.00 4.30
1251 1303 2.034053 CGCAGTCAGATTCTACTCCCTC 59.966 54.545 0.00 0.00 0.00 4.30
1252 1304 2.028130 CGCAGTCAGATTCTACTCCCT 58.972 52.381 0.00 0.00 0.00 4.20
1253 1305 2.025155 TCGCAGTCAGATTCTACTCCC 58.975 52.381 0.00 0.00 0.00 4.30
1254 1306 4.047822 CAATCGCAGTCAGATTCTACTCC 58.952 47.826 0.00 0.00 36.30 3.85
1255 1307 3.489047 GCAATCGCAGTCAGATTCTACTC 59.511 47.826 0.00 0.00 36.30 2.59
1256 1308 3.118992 TGCAATCGCAGTCAGATTCTACT 60.119 43.478 0.00 0.00 45.36 2.57
1257 1309 3.190079 TGCAATCGCAGTCAGATTCTAC 58.810 45.455 0.00 0.00 45.36 2.59
1284 1366 2.475864 CAGATGCAGATTCTAGCGCTTC 59.524 50.000 18.68 7.05 0.00 3.86
1314 1396 3.420397 GAAAACCTCGAGTCCTCCG 57.580 57.895 12.31 0.00 0.00 4.63
1328 1411 1.161843 GGAATGACCGGCTTCGAAAA 58.838 50.000 0.00 0.00 35.61 2.29
1332 1415 1.815421 CAGGGAATGACCGGCTTCG 60.815 63.158 0.00 0.00 40.11 3.79
1421 1516 0.036294 GGCAGAACAGTCCCAGTACC 60.036 60.000 0.00 0.00 0.00 3.34
1438 1533 0.458716 GCCGCGGATTAGATAGAGGC 60.459 60.000 33.48 3.97 41.84 4.70
1469 1564 2.171840 ACCACACCTAGTCTGCTACTG 58.828 52.381 2.92 0.00 39.39 2.74
1483 1578 2.482864 CCCAAGCAAATCAAACCACAC 58.517 47.619 0.00 0.00 0.00 3.82
1611 1765 6.566079 AGGATCAGAATTCTACACCATTGA 57.434 37.500 7.86 0.00 0.00 2.57
1640 1795 3.670625 GCACCGGCAATATAGGAACATA 58.329 45.455 0.00 0.00 40.72 2.29
1641 1796 2.504367 GCACCGGCAATATAGGAACAT 58.496 47.619 0.00 0.00 40.72 2.71
1656 1811 2.110967 CATTGCCTCTCCTGCACCG 61.111 63.158 0.00 0.00 38.72 4.94
1665 1820 0.622136 TCATCACCAGCATTGCCTCT 59.378 50.000 4.70 0.00 0.00 3.69
1784 1939 3.589654 ATGCTGTGGTGACCGGACG 62.590 63.158 9.46 0.00 0.00 4.79
1890 2045 5.106157 CCTTCCATAGTTGCTTGGTAGTTTG 60.106 44.000 0.00 0.00 34.48 2.93
1893 2048 3.622455 GCCTTCCATAGTTGCTTGGTAGT 60.622 47.826 0.00 0.00 34.48 2.73
1996 2151 2.470821 CGAGTTATGTTCACCCGGATC 58.529 52.381 0.73 0.00 0.00 3.36
1999 2154 1.087771 GCCGAGTTATGTTCACCCGG 61.088 60.000 0.00 0.00 38.58 5.73
2109 2276 4.943705 GCTCACCTCATTCCAATGAAGTAA 59.056 41.667 3.70 0.00 44.20 2.24
2204 2371 7.658179 TGACTACGAGGTAATAAGTATACCG 57.342 40.000 0.00 0.00 38.81 4.02
2229 2396 5.487488 ACCAAGGTCCAGATATTGTGAACTA 59.513 40.000 0.00 0.00 0.00 2.24
2317 2484 9.474313 TTTAAAGTTTGGCCAGATCATTAGTAT 57.526 29.630 5.11 0.00 0.00 2.12
2560 2817 0.955919 GTCTGCTTGTACCTGGCACC 60.956 60.000 0.00 0.00 32.33 5.01
2577 2834 2.087009 GTACGTCCTGCGCACAGTC 61.087 63.158 5.66 0.00 46.11 3.51
2581 2838 0.921347 CTTATGTACGTCCTGCGCAC 59.079 55.000 5.66 0.00 46.11 5.34
2589 2846 2.285602 CGGCACAATGCTTATGTACGTC 60.286 50.000 0.00 0.00 44.28 4.34
2590 2847 1.663643 CGGCACAATGCTTATGTACGT 59.336 47.619 0.13 0.00 44.28 3.57
2591 2848 1.003972 CCGGCACAATGCTTATGTACG 60.004 52.381 0.13 0.00 44.28 3.67
2592 2849 1.333619 CCCGGCACAATGCTTATGTAC 59.666 52.381 0.00 0.00 44.28 2.90
2593 2850 1.210722 TCCCGGCACAATGCTTATGTA 59.789 47.619 0.00 0.00 44.28 2.29
2594 2851 0.034574 TCCCGGCACAATGCTTATGT 60.035 50.000 0.00 0.00 44.28 2.29
2595 2852 1.066002 CTTCCCGGCACAATGCTTATG 59.934 52.381 0.00 0.00 44.28 1.90
2596 2853 1.064758 TCTTCCCGGCACAATGCTTAT 60.065 47.619 0.00 0.00 44.28 1.73
2609 2866 2.434359 GACCGGTGCTTCTTCCCG 60.434 66.667 14.63 0.00 41.37 5.14
2623 2880 6.767902 TGATTCCAGTCTTGCTATATTTGACC 59.232 38.462 0.00 0.00 0.00 4.02
2638 2895 2.620585 GCCTTAATGCCTGATTCCAGTC 59.379 50.000 0.00 0.00 38.74 3.51
2650 2907 1.823899 CCACCGAGGGCCTTAATGC 60.824 63.158 7.89 0.00 0.00 3.56
2661 2918 0.250295 TTTGCCTTCTGACCACCGAG 60.250 55.000 0.00 0.00 0.00 4.63
2680 2937 3.560105 AGAGAAGGTTCTGCTGCTTTTT 58.440 40.909 0.00 0.00 37.73 1.94
2681 2938 3.220674 AGAGAAGGTTCTGCTGCTTTT 57.779 42.857 0.00 0.00 37.73 2.27
2682 2939 2.883386 CAAGAGAAGGTTCTGCTGCTTT 59.117 45.455 0.00 0.00 37.73 3.51
2683 2940 2.502295 CAAGAGAAGGTTCTGCTGCTT 58.498 47.619 0.00 0.00 37.73 3.91
2684 2941 1.271271 CCAAGAGAAGGTTCTGCTGCT 60.271 52.381 0.00 0.00 37.73 4.24
2685 2942 1.163554 CCAAGAGAAGGTTCTGCTGC 58.836 55.000 0.00 0.00 37.73 5.25
2686 2943 2.557920 ACCAAGAGAAGGTTCTGCTG 57.442 50.000 0.00 0.00 37.73 4.41
2687 2944 2.972713 TGTACCAAGAGAAGGTTCTGCT 59.027 45.455 0.00 0.00 40.54 4.24
2688 2945 3.402628 TGTACCAAGAGAAGGTTCTGC 57.597 47.619 0.00 0.00 40.54 4.26
2689 2946 6.878317 TGATATGTACCAAGAGAAGGTTCTG 58.122 40.000 0.00 0.00 40.54 3.02
2690 2947 6.897966 TCTGATATGTACCAAGAGAAGGTTCT 59.102 38.462 0.00 0.00 40.54 3.01
2691 2948 7.113658 TCTGATATGTACCAAGAGAAGGTTC 57.886 40.000 0.00 0.00 40.54 3.62
2692 2949 7.345653 TCATCTGATATGTACCAAGAGAAGGTT 59.654 37.037 0.00 0.00 40.54 3.50
2693 2950 6.841229 TCATCTGATATGTACCAAGAGAAGGT 59.159 38.462 0.00 0.00 43.14 3.50
2694 2951 7.295322 TCATCTGATATGTACCAAGAGAAGG 57.705 40.000 0.00 0.00 0.00 3.46
2695 2952 9.605275 TTTTCATCTGATATGTACCAAGAGAAG 57.395 33.333 0.00 0.00 0.00 2.85
2696 2953 9.383519 GTTTTCATCTGATATGTACCAAGAGAA 57.616 33.333 0.00 0.00 0.00 2.87
2697 2954 8.539544 TGTTTTCATCTGATATGTACCAAGAGA 58.460 33.333 0.00 0.00 0.00 3.10
2698 2955 8.722480 TGTTTTCATCTGATATGTACCAAGAG 57.278 34.615 0.00 0.00 0.00 2.85
2715 2972 7.014038 GCTCCATCTTATCAAGGATGTTTTCAT 59.986 37.037 0.00 0.00 43.99 2.57
2716 2973 6.319658 GCTCCATCTTATCAAGGATGTTTTCA 59.680 38.462 0.00 0.00 38.02 2.69
2717 2974 6.545298 AGCTCCATCTTATCAAGGATGTTTTC 59.455 38.462 0.00 0.00 38.02 2.29
2718 2975 6.320672 CAGCTCCATCTTATCAAGGATGTTTT 59.679 38.462 0.00 0.00 38.02 2.43
2719 2976 5.826737 CAGCTCCATCTTATCAAGGATGTTT 59.173 40.000 0.00 0.00 38.02 2.83
2720 2977 5.374921 CAGCTCCATCTTATCAAGGATGTT 58.625 41.667 0.00 0.00 38.02 2.71
2721 2978 4.746089 GCAGCTCCATCTTATCAAGGATGT 60.746 45.833 0.00 0.00 38.02 3.06
2722 2979 3.752222 GCAGCTCCATCTTATCAAGGATG 59.248 47.826 0.00 0.00 39.04 3.51
2723 2980 3.393609 TGCAGCTCCATCTTATCAAGGAT 59.606 43.478 0.00 0.00 0.00 3.24
2724 2981 2.773661 TGCAGCTCCATCTTATCAAGGA 59.226 45.455 0.00 0.00 0.00 3.36
2725 2982 3.139850 CTGCAGCTCCATCTTATCAAGG 58.860 50.000 0.00 0.00 0.00 3.61
2726 2983 2.548904 GCTGCAGCTCCATCTTATCAAG 59.451 50.000 31.33 0.00 38.21 3.02
2727 2984 2.092807 TGCTGCAGCTCCATCTTATCAA 60.093 45.455 36.61 11.32 42.66 2.57
2728 2985 1.487558 TGCTGCAGCTCCATCTTATCA 59.512 47.619 36.61 11.53 42.66 2.15
2729 2986 1.872313 GTGCTGCAGCTCCATCTTATC 59.128 52.381 36.61 6.43 42.66 1.75
2730 2987 1.964552 GTGCTGCAGCTCCATCTTAT 58.035 50.000 36.61 0.00 42.66 1.73
2731 2988 3.465990 GTGCTGCAGCTCCATCTTA 57.534 52.632 36.61 13.65 42.66 2.10
2732 2989 4.315588 GTGCTGCAGCTCCATCTT 57.684 55.556 36.61 0.00 42.66 2.40
2744 3001 4.980702 TTGGCCTGGCAGGTGCTG 62.981 66.667 32.80 9.36 41.70 4.41
2745 3002 4.982701 GTTGGCCTGGCAGGTGCT 62.983 66.667 32.80 0.00 41.70 4.40
2749 3006 4.028490 TACCGTTGGCCTGGCAGG 62.028 66.667 29.44 29.44 38.80 4.85
2750 3007 2.746277 GTACCGTTGGCCTGGCAG 60.746 66.667 22.05 7.75 0.00 4.85
2751 3008 2.901281 ATGTACCGTTGGCCTGGCA 61.901 57.895 22.05 1.21 0.00 4.92
2752 3009 2.045340 ATGTACCGTTGGCCTGGC 60.045 61.111 11.05 11.05 0.00 4.85
2753 3010 2.406616 GCATGTACCGTTGGCCTGG 61.407 63.158 3.32 5.94 0.00 4.45
2754 3011 2.406616 GGCATGTACCGTTGGCCTG 61.407 63.158 3.32 0.00 41.39 4.85
2755 3012 2.045340 GGCATGTACCGTTGGCCT 60.045 61.111 3.32 0.00 41.39 5.19
2756 3013 2.360600 TGGCATGTACCGTTGGCC 60.361 61.111 0.00 0.00 44.82 5.36
2757 3014 1.644786 GACTGGCATGTACCGTTGGC 61.645 60.000 0.00 7.04 38.77 4.52
2758 3015 0.321210 TGACTGGCATGTACCGTTGG 60.321 55.000 0.00 0.00 0.00 3.77
2759 3016 1.078709 CTGACTGGCATGTACCGTTG 58.921 55.000 0.00 0.00 0.00 4.10
2760 3017 0.973632 TCTGACTGGCATGTACCGTT 59.026 50.000 0.00 0.00 0.00 4.44
2761 3018 0.246635 GTCTGACTGGCATGTACCGT 59.753 55.000 0.00 0.00 0.00 4.83
2762 3019 0.532573 AGTCTGACTGGCATGTACCG 59.467 55.000 10.00 0.00 0.00 4.02
2763 3020 2.350522 CAAGTCTGACTGGCATGTACC 58.649 52.381 11.71 0.00 0.00 3.34
2764 3021 2.028112 TCCAAGTCTGACTGGCATGTAC 60.028 50.000 11.71 0.00 0.00 2.90
2765 3022 2.234661 CTCCAAGTCTGACTGGCATGTA 59.765 50.000 11.71 0.00 0.00 2.29
2766 3023 1.002888 CTCCAAGTCTGACTGGCATGT 59.997 52.381 11.71 0.00 0.00 3.21
2767 3024 1.678123 CCTCCAAGTCTGACTGGCATG 60.678 57.143 11.71 5.68 0.00 4.06
2768 3025 0.617413 CCTCCAAGTCTGACTGGCAT 59.383 55.000 11.71 0.00 0.00 4.40
2769 3026 0.471780 TCCTCCAAGTCTGACTGGCA 60.472 55.000 11.71 0.00 0.00 4.92
2770 3027 0.248843 CTCCTCCAAGTCTGACTGGC 59.751 60.000 11.71 0.00 0.00 4.85
2771 3028 0.248843 GCTCCTCCAAGTCTGACTGG 59.751 60.000 11.71 14.23 0.00 4.00
2772 3029 0.972134 TGCTCCTCCAAGTCTGACTG 59.028 55.000 11.71 5.75 0.00 3.51
2773 3030 0.972883 GTGCTCCTCCAAGTCTGACT 59.027 55.000 4.06 4.06 0.00 3.41
2774 3031 0.036858 GGTGCTCCTCCAAGTCTGAC 60.037 60.000 0.00 0.00 0.00 3.51
2775 3032 0.178921 AGGTGCTCCTCCAAGTCTGA 60.179 55.000 0.18 0.00 40.58 3.27
2776 3033 2.370718 AGGTGCTCCTCCAAGTCTG 58.629 57.895 0.18 0.00 40.58 3.51
2777 3034 4.987122 AGGTGCTCCTCCAAGTCT 57.013 55.556 0.18 0.00 40.58 3.24
2786 3043 0.610232 ATGTGCCTTTGAGGTGCTCC 60.610 55.000 0.00 0.00 37.80 4.70
2787 3044 0.524862 CATGTGCCTTTGAGGTGCTC 59.475 55.000 0.00 0.00 37.80 4.26
2788 3045 0.896940 CCATGTGCCTTTGAGGTGCT 60.897 55.000 0.00 0.00 37.80 4.40
2789 3046 1.588082 CCATGTGCCTTTGAGGTGC 59.412 57.895 0.00 0.00 37.80 5.01
2790 3047 1.180456 TGCCATGTGCCTTTGAGGTG 61.180 55.000 4.07 0.00 37.80 4.00
2791 3048 0.251922 ATGCCATGTGCCTTTGAGGT 60.252 50.000 4.07 0.00 37.80 3.85
2792 3049 0.458669 GATGCCATGTGCCTTTGAGG 59.541 55.000 4.07 0.00 40.16 3.86
2793 3050 1.134367 CTGATGCCATGTGCCTTTGAG 59.866 52.381 4.07 0.00 40.16 3.02
2794 3051 1.179152 CTGATGCCATGTGCCTTTGA 58.821 50.000 4.07 0.00 40.16 2.69
2795 3052 0.459585 GCTGATGCCATGTGCCTTTG 60.460 55.000 4.07 0.00 40.16 2.77
2796 3053 0.901114 TGCTGATGCCATGTGCCTTT 60.901 50.000 4.07 0.00 40.16 3.11
2797 3054 0.686441 ATGCTGATGCCATGTGCCTT 60.686 50.000 4.07 0.00 40.16 4.35
2798 3055 0.184211 TATGCTGATGCCATGTGCCT 59.816 50.000 4.07 0.00 40.16 4.75
2799 3056 1.034356 TTATGCTGATGCCATGTGCC 58.966 50.000 4.07 0.00 40.16 5.01
2800 3057 1.406180 TGTTATGCTGATGCCATGTGC 59.594 47.619 0.00 0.00 38.71 4.57
2801 3058 3.316868 TGATGTTATGCTGATGCCATGTG 59.683 43.478 0.00 0.00 38.71 3.21
2802 3059 3.558033 TGATGTTATGCTGATGCCATGT 58.442 40.909 0.00 0.00 38.71 3.21
2803 3060 4.577834 TTGATGTTATGCTGATGCCATG 57.422 40.909 0.00 0.00 38.71 3.66
2804 3061 4.560716 GCATTGATGTTATGCTGATGCCAT 60.561 41.667 0.00 0.00 43.86 4.40
2805 3062 3.243602 GCATTGATGTTATGCTGATGCCA 60.244 43.478 0.00 0.00 43.86 4.92
2806 3063 3.314553 GCATTGATGTTATGCTGATGCC 58.685 45.455 0.00 0.00 43.86 4.40
2807 3064 3.005472 AGGCATTGATGTTATGCTGATGC 59.995 43.478 7.64 0.00 45.91 3.91
2808 3065 4.848562 AGGCATTGATGTTATGCTGATG 57.151 40.909 7.64 0.00 45.91 3.07
2809 3066 6.920817 CATAAGGCATTGATGTTATGCTGAT 58.079 36.000 7.64 0.00 45.91 2.90
2810 3067 6.321848 CATAAGGCATTGATGTTATGCTGA 57.678 37.500 7.64 0.00 45.91 4.26
2827 3084 2.170166 TGTTGCCTCCTTTGCATAAGG 58.830 47.619 16.92 16.92 38.76 2.69
2828 3085 3.578688 GTTGTTGCCTCCTTTGCATAAG 58.421 45.455 0.00 0.00 38.76 1.73
2829 3086 2.030363 CGTTGTTGCCTCCTTTGCATAA 60.030 45.455 0.00 0.00 38.76 1.90
2830 3087 1.539388 CGTTGTTGCCTCCTTTGCATA 59.461 47.619 0.00 0.00 38.76 3.14
2831 3088 0.314935 CGTTGTTGCCTCCTTTGCAT 59.685 50.000 0.00 0.00 38.76 3.96
2832 3089 0.749818 TCGTTGTTGCCTCCTTTGCA 60.750 50.000 0.00 0.00 36.84 4.08
2833 3090 0.598065 ATCGTTGTTGCCTCCTTTGC 59.402 50.000 0.00 0.00 0.00 3.68
2834 3091 4.082787 ACAATATCGTTGTTGCCTCCTTTG 60.083 41.667 3.19 0.00 0.00 2.77
2835 3092 4.079253 ACAATATCGTTGTTGCCTCCTTT 58.921 39.130 3.19 0.00 0.00 3.11
2836 3093 3.440173 CACAATATCGTTGTTGCCTCCTT 59.560 43.478 3.19 0.00 0.00 3.36
2837 3094 3.009723 CACAATATCGTTGTTGCCTCCT 58.990 45.455 3.19 0.00 0.00 3.69
2838 3095 2.097466 CCACAATATCGTTGTTGCCTCC 59.903 50.000 3.19 0.00 0.00 4.30
2839 3096 3.006940 TCCACAATATCGTTGTTGCCTC 58.993 45.455 3.19 0.00 0.00 4.70
2840 3097 3.009723 CTCCACAATATCGTTGTTGCCT 58.990 45.455 3.19 0.00 0.00 4.75
2841 3098 3.006940 TCTCCACAATATCGTTGTTGCC 58.993 45.455 3.19 0.00 0.00 4.52
2842 3099 4.083537 TGTTCTCCACAATATCGTTGTTGC 60.084 41.667 3.19 0.00 29.87 4.17
2843 3100 5.605564 TGTTCTCCACAATATCGTTGTTG 57.394 39.130 1.85 1.85 29.87 3.33
2844 3101 6.817765 AATGTTCTCCACAATATCGTTGTT 57.182 33.333 0.00 0.00 39.50 2.83
2845 3102 6.429692 TGAAATGTTCTCCACAATATCGTTGT 59.570 34.615 0.00 0.00 39.50 3.32
2846 3103 6.742718 GTGAAATGTTCTCCACAATATCGTTG 59.257 38.462 0.00 0.00 39.50 4.10
2847 3104 6.655003 AGTGAAATGTTCTCCACAATATCGTT 59.345 34.615 0.00 0.00 39.50 3.85
2848 3105 6.092670 CAGTGAAATGTTCTCCACAATATCGT 59.907 38.462 0.00 0.00 39.50 3.73
2849 3106 6.481134 CAGTGAAATGTTCTCCACAATATCG 58.519 40.000 0.00 0.00 39.50 2.92
2850 3107 6.127925 TGCAGTGAAATGTTCTCCACAATATC 60.128 38.462 0.00 0.00 39.50 1.63
2851 3108 5.711506 TGCAGTGAAATGTTCTCCACAATAT 59.288 36.000 0.00 0.00 39.50 1.28
2852 3109 5.069318 TGCAGTGAAATGTTCTCCACAATA 58.931 37.500 0.00 0.00 39.50 1.90
2853 3110 3.890756 TGCAGTGAAATGTTCTCCACAAT 59.109 39.130 0.00 0.00 39.50 2.71
2854 3111 3.286353 TGCAGTGAAATGTTCTCCACAA 58.714 40.909 0.00 0.00 39.50 3.33
2855 3112 2.929641 TGCAGTGAAATGTTCTCCACA 58.070 42.857 0.00 0.00 40.71 4.17
2856 3113 3.503363 TCATGCAGTGAAATGTTCTCCAC 59.497 43.478 0.00 0.00 32.78 4.02
2857 3114 3.753815 TCATGCAGTGAAATGTTCTCCA 58.246 40.909 0.00 0.00 32.78 3.86
2858 3115 4.730657 CTTCATGCAGTGAAATGTTCTCC 58.269 43.478 11.14 0.00 45.74 3.71
2859 3116 4.164294 GCTTCATGCAGTGAAATGTTCTC 58.836 43.478 11.14 0.00 45.74 2.87
2860 3117 4.170292 GCTTCATGCAGTGAAATGTTCT 57.830 40.909 11.14 0.00 45.74 3.01
2873 3130 1.627424 GCGCGATTTTGCTTCATGC 59.373 52.632 12.10 0.00 43.25 4.06
2874 3131 0.521034 TCGCGCGATTTTGCTTCATG 60.521 50.000 31.40 0.00 0.00 3.07
2875 3132 0.247814 CTCGCGCGATTTTGCTTCAT 60.248 50.000 34.86 0.00 0.00 2.57
2876 3133 1.132436 CTCGCGCGATTTTGCTTCA 59.868 52.632 34.86 6.65 0.00 3.02
6058 8538 1.078918 CTGGCGAGCATCACCTGAA 60.079 57.895 0.00 0.00 38.38 3.02
6059 8539 1.953231 CTCTGGCGAGCATCACCTGA 61.953 60.000 0.00 0.00 42.01 3.86
6094 8574 0.892358 TGCGGTCTCGACACTACCTT 60.892 55.000 0.00 0.00 39.00 3.50
6113 8593 6.239373 CCATCTGATCTGAAGCTAGTTCATCT 60.239 42.308 6.37 1.07 44.44 2.90
6123 8603 1.068281 TCGAGCCATCTGATCTGAAGC 59.932 52.381 15.80 15.80 0.00 3.86
6233 8727 0.376152 CCGATGTTGCACTGCAGATC 59.624 55.000 23.35 10.69 40.61 2.75
6251 8745 1.156736 CGATGTTCCAGTGTTCCACC 58.843 55.000 0.00 0.00 34.49 4.61
6254 8748 1.635663 CGGCGATGTTCCAGTGTTCC 61.636 60.000 0.00 0.00 0.00 3.62
6259 8753 1.374252 GACACGGCGATGTTCCAGT 60.374 57.895 16.62 0.00 31.24 4.00
6349 8853 7.742556 TGCCATCACATAATTCGAATGAATA 57.257 32.000 12.25 0.59 44.02 1.75
6432 8936 7.267128 TGGCATGAATCATTGAAAATTACTCC 58.733 34.615 0.00 0.00 0.00 3.85
6433 8937 8.761497 CATGGCATGAATCATTGAAAATTACTC 58.239 33.333 22.91 0.00 0.00 2.59
6434 8938 8.262227 ACATGGCATGAATCATTGAAAATTACT 58.738 29.630 32.74 1.55 0.00 2.24
6435 8939 8.332464 CACATGGCATGAATCATTGAAAATTAC 58.668 33.333 32.74 0.00 0.00 1.89
6436 8940 8.258708 TCACATGGCATGAATCATTGAAAATTA 58.741 29.630 32.74 0.87 0.00 1.40
6437 8941 7.106890 TCACATGGCATGAATCATTGAAAATT 58.893 30.769 32.74 3.01 0.00 1.82
6536 9041 6.350194 GCAAATAAACCTTTCTTCCTACTGGG 60.350 42.308 0.00 0.00 0.00 4.45
6637 9144 5.061920 ACAATCTTCTGTTCCTAGACGTC 57.938 43.478 7.70 7.70 0.00 4.34
6666 9173 2.230508 AGCAGATCCACATTTGCTTGTG 59.769 45.455 0.00 7.70 45.95 3.33
6675 9182 4.277672 GCATGTTAATGAGCAGATCCACAT 59.722 41.667 0.00 0.00 35.67 3.21
6710 9217 1.032114 GCCAACTGCCAGGTGTATCC 61.032 60.000 9.27 0.00 28.73 2.59
6711 9218 0.322456 TGCCAACTGCCAGGTGTATC 60.322 55.000 9.27 0.00 40.16 2.24
6712 9219 0.609131 GTGCCAACTGCCAGGTGTAT 60.609 55.000 9.27 0.00 40.16 2.29
6732 9239 8.613060 TCATATTTCTGTGAATATTCAGGAGC 57.387 34.615 18.47 7.53 37.98 4.70
6826 9336 6.672147 AGTTCAGATCAATTGTGTAGTTTGC 58.328 36.000 5.13 0.00 0.00 3.68
6888 9398 4.032104 GCCTATGCTTTTTCTTTTGATGCG 59.968 41.667 0.00 0.00 33.53 4.73
6891 9401 7.444299 TCTTTGCCTATGCTTTTTCTTTTGAT 58.556 30.769 0.00 0.00 38.71 2.57
6902 9412 2.200373 ACGGTTCTTTGCCTATGCTT 57.800 45.000 0.00 0.00 38.71 3.91
6919 9429 1.927174 CAGCCTGGATTTCGAGTTACG 59.073 52.381 0.00 0.00 44.09 3.18
6922 9432 0.984230 TCCAGCCTGGATTTCGAGTT 59.016 50.000 10.05 0.00 42.67 3.01
6948 9459 9.095065 ACAAGTTCGATCCTATTACAATGTTAC 57.905 33.333 0.00 0.00 0.00 2.50
7013 9524 4.520111 TGCTTCATGTTTACAGTTCATGCT 59.480 37.500 0.00 0.00 38.82 3.79


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.