Multiple sequence alignment - TraesCS5A01G223100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G223100 chr5A 100.000 9246 0 0 1 9246 438924043 438933288 0.000000e+00 17075.0
1 TraesCS5A01G223100 chr5A 91.532 1677 106 19 6453 8098 525152804 525154475 0.000000e+00 2278.0
2 TraesCS5A01G223100 chr5A 89.438 1761 94 16 6397 8096 547814410 547816139 0.000000e+00 2137.0
3 TraesCS5A01G223100 chr5A 88.285 1767 125 26 6392 8099 535562397 535564140 0.000000e+00 2041.0
4 TraesCS5A01G223100 chr5A 90.498 884 80 2 8366 9246 81016640 81017522 0.000000e+00 1164.0
5 TraesCS5A01G223100 chr5A 87.694 967 79 20 7154 8096 509987218 509986268 0.000000e+00 1090.0
6 TraesCS5A01G223100 chr5A 92.440 291 19 3 6107 6397 438927063 438927350 6.680000e-111 412.0
7 TraesCS5A01G223100 chr5A 92.440 291 19 3 3021 3308 438930149 438930439 6.680000e-111 412.0
8 TraesCS5A01G223100 chr5A 93.548 186 6 3 8088 8272 438927339 438927519 1.180000e-68 272.0
9 TraesCS5A01G223100 chr5A 93.548 186 6 3 3297 3477 438932130 438932314 1.180000e-68 272.0
10 TraesCS5A01G223100 chr5A 93.496 123 8 0 1601 1723 439182661 439182783 5.700000e-42 183.0
11 TraesCS5A01G223100 chr5A 80.952 126 20 2 2341 2462 439183392 439183517 7.640000e-16 97.1
12 TraesCS5A01G223100 chr5D 95.284 1548 57 6 2248 3789 337710770 337712307 0.000000e+00 2440.0
13 TraesCS5A01G223100 chr5D 89.449 1507 75 26 583 2054 337704815 337706272 0.000000e+00 1825.0
14 TraesCS5A01G223100 chr5D 97.034 236 7 0 3969 4204 337712289 337712524 1.870000e-106 398.0
15 TraesCS5A01G223100 chr5D 89.761 293 23 2 6107 6397 337711544 337711831 1.470000e-97 368.0
16 TraesCS5A01G223100 chr5D 97.436 195 4 1 2041 2234 337710591 337710785 1.920000e-86 331.0
17 TraesCS5A01G223100 chr5D 98.370 184 3 0 3787 3970 548322842 548323025 3.220000e-84 324.0
18 TraesCS5A01G223100 chr5D 97.849 186 4 0 3786 3971 385791247 385791062 1.160000e-83 322.0
19 TraesCS5A01G223100 chr5D 93.011 186 12 1 8088 8272 337711820 337712005 4.250000e-68 270.0
20 TraesCS5A01G223100 chr5D 90.164 122 10 1 1604 1725 338231495 338231614 3.460000e-34 158.0
21 TraesCS5A01G223100 chr5D 87.597 129 16 0 1595 1723 338239698 338239826 5.780000e-32 150.0
22 TraesCS5A01G223100 chr5D 93.548 62 4 0 2401 2462 338240499 338240560 9.890000e-15 93.5
23 TraesCS5A01G223100 chr3B 87.861 1903 223 7 4208 6107 452542816 452540919 0.000000e+00 2228.0
24 TraesCS5A01G223100 chr3B 88.006 1901 207 6 4208 6105 768749944 768748062 0.000000e+00 2228.0
25 TraesCS5A01G223100 chr3B 79.376 1891 375 14 4221 6107 14530076 14528197 0.000000e+00 1317.0
26 TraesCS5A01G223100 chr4A 89.143 1750 108 24 6407 8098 604015644 604017369 0.000000e+00 2104.0
27 TraesCS5A01G223100 chr4A 97.906 191 3 1 3782 3971 477497848 477497658 6.920000e-86 329.0
28 TraesCS5A01G223100 chr4A 97.895 190 3 1 3786 3975 710743713 710743525 2.490000e-85 327.0
29 TraesCS5A01G223100 chr5B 92.605 1474 63 16 2248 3713 396629186 396630621 0.000000e+00 2076.0
30 TraesCS5A01G223100 chr5B 87.719 798 60 21 463 1238 396627616 396628397 0.000000e+00 896.0
31 TraesCS5A01G223100 chr5B 88.186 601 46 12 1413 1991 396628396 396628993 0.000000e+00 693.0
32 TraesCS5A01G223100 chr5B 84.483 580 37 15 699 1238 396835902 396836468 2.960000e-144 523.0
33 TraesCS5A01G223100 chr5B 93.266 297 13 3 1 293 396835162 396835455 1.840000e-116 431.0
34 TraesCS5A01G223100 chr5B 92.759 290 18 3 6107 6396 396629953 396630239 5.160000e-112 416.0
35 TraesCS5A01G223100 chr5B 91.497 294 18 3 1 290 396627312 396627602 1.870000e-106 398.0
36 TraesCS5A01G223100 chr5B 98.925 186 2 0 3786 3971 214934736 214934921 5.350000e-87 333.0
37 TraesCS5A01G223100 chr5B 96.410 195 7 0 3775 3969 233689059 233689253 1.160000e-83 322.0
38 TraesCS5A01G223100 chr5B 93.925 214 12 1 327 539 396835683 396835896 1.160000e-83 322.0
39 TraesCS5A01G223100 chr5B 84.940 332 22 13 1413 1719 396836467 396836795 2.510000e-80 311.0
40 TraesCS5A01G223100 chr5B 84.940 332 22 13 1413 1719 396838832 396839160 2.510000e-80 311.0
41 TraesCS5A01G223100 chr5B 84.940 332 22 13 1413 1719 396841496 396841824 2.510000e-80 311.0
42 TraesCS5A01G223100 chr5B 84.940 332 22 13 1413 1719 396846664 396846992 2.510000e-80 311.0
43 TraesCS5A01G223100 chr5B 93.237 207 10 1 2032 2234 396628995 396629201 1.510000e-77 302.0
44 TraesCS5A01G223100 chr5B 93.011 186 12 1 8088 8272 396630229 396630414 4.250000e-68 270.0
45 TraesCS5A01G223100 chr5B 91.473 129 11 0 1595 1723 397427180 397427308 2.650000e-40 178.0
46 TraesCS5A01G223100 chr5B 86.897 145 18 1 1604 1747 397407760 397407904 2.670000e-35 161.0
47 TraesCS5A01G223100 chr5B 88.000 125 8 2 1120 1238 396838710 396838833 3.480000e-29 141.0
48 TraesCS5A01G223100 chr5B 88.000 125 8 2 1120 1238 396841374 396841497 3.480000e-29 141.0
49 TraesCS5A01G223100 chr5B 88.000 125 8 2 1120 1238 396846542 396846665 3.480000e-29 141.0
50 TraesCS5A01G223100 chr5B 93.548 62 4 0 2401 2462 397427975 397428036 9.890000e-15 93.5
51 TraesCS5A01G223100 chr6A 88.061 1759 126 26 6394 8099 577763593 577761866 0.000000e+00 2008.0
52 TraesCS5A01G223100 chr6A 98.919 185 2 0 3786 3970 7980476 7980292 1.920000e-86 331.0
53 TraesCS5A01G223100 chr6A 96.373 193 7 0 3787 3979 127185358 127185166 1.500000e-82 318.0
54 TraesCS5A01G223100 chr1A 88.065 1726 128 31 6397 8096 504742861 504741188 0.000000e+00 1975.0
55 TraesCS5A01G223100 chr1A 88.448 1160 81 5 6397 7530 505002477 505001345 0.000000e+00 1351.0
56 TraesCS5A01G223100 chr1A 98.404 188 3 0 3783 3970 583789320 583789133 1.920000e-86 331.0
57 TraesCS5A01G223100 chr1A 98.901 182 2 0 3786 3967 557921018 557920837 8.950000e-85 326.0
58 TraesCS5A01G223100 chr1A 98.895 181 2 0 3786 3966 269572295 269572475 3.220000e-84 324.0
59 TraesCS5A01G223100 chr1A 97.838 185 4 0 3786 3970 363424894 363424710 4.170000e-83 320.0
60 TraesCS5A01G223100 chr1A 97.354 189 4 1 3777 3965 582360195 582360008 4.170000e-83 320.0
61 TraesCS5A01G223100 chr7A 90.681 1395 72 13 6394 7733 703525284 703523893 0.000000e+00 1803.0
62 TraesCS5A01G223100 chr7A 90.643 1197 59 9 6397 7540 26037172 26038368 0.000000e+00 1541.0
63 TraesCS5A01G223100 chr7A 91.186 919 47 6 6395 7284 129867978 129868891 0.000000e+00 1218.0
64 TraesCS5A01G223100 chr7A 91.290 884 74 1 8366 9246 369296351 369295468 0.000000e+00 1203.0
65 TraesCS5A01G223100 chr7A 88.235 969 76 10 7154 8098 63408443 63409397 0.000000e+00 1123.0
66 TraesCS5A01G223100 chr3A 91.155 1221 70 7 6395 7579 30175514 30174296 0.000000e+00 1622.0
67 TraesCS5A01G223100 chr3A 91.525 885 69 4 8366 9246 377385575 377384693 0.000000e+00 1214.0
68 TraesCS5A01G223100 chr3A 92.032 866 65 2 8384 9246 642104703 642103839 0.000000e+00 1214.0
69 TraesCS5A01G223100 chr3A 91.073 885 74 4 8366 9246 369048013 369048896 0.000000e+00 1192.0
70 TraesCS5A01G223100 chr3A 90.827 883 76 4 8366 9246 472727781 472728660 0.000000e+00 1177.0
71 TraesCS5A01G223100 chr3A 90.951 873 75 2 8378 9246 642057254 642056382 0.000000e+00 1171.0
72 TraesCS5A01G223100 chr3A 85.685 971 95 20 7154 8099 340258177 340259128 0.000000e+00 983.0
73 TraesCS5A01G223100 chr3A 98.413 189 3 0 3782 3970 642038748 642038936 5.350000e-87 333.0
74 TraesCS5A01G223100 chr3A 90.909 231 17 3 3741 3969 550111101 550110873 3.240000e-79 307.0
75 TraesCS5A01G223100 chr2A 91.179 1077 67 4 6397 7446 773849816 773848741 0.000000e+00 1437.0
76 TraesCS5A01G223100 chr2A 91.403 884 73 1 8366 9246 310644376 310645259 0.000000e+00 1208.0
77 TraesCS5A01G223100 chr2A 90.171 936 66 8 6590 7499 81720165 81719230 0.000000e+00 1195.0
78 TraesCS5A01G223100 chr2A 87.010 970 83 20 7154 8096 28153349 28152396 0.000000e+00 1053.0
79 TraesCS5A01G223100 chr2A 86.818 971 90 19 7154 8100 214423316 214422360 0.000000e+00 1050.0
80 TraesCS5A01G223100 chr2A 89.392 839 55 8 6397 7205 156465655 156464821 0.000000e+00 1026.0
81 TraesCS5A01G223100 chr7D 90.847 885 75 4 8366 9246 508905991 508905109 0.000000e+00 1181.0
82 TraesCS5A01G223100 chr2B 83.107 663 106 3 5451 6107 11222518 11223180 4.780000e-167 599.0
83 TraesCS5A01G223100 chr4D 97.449 196 5 0 3775 3970 478512380 478512185 1.490000e-87 335.0
84 TraesCS5A01G223100 chr4D 98.889 180 2 0 3787 3966 405455305 405455126 1.160000e-83 322.0
85 TraesCS5A01G223100 chr4D 96.392 194 7 0 3778 3971 331632375 331632568 4.170000e-83 320.0
86 TraesCS5A01G223100 chr1B 98.919 185 2 0 3786 3970 33923246 33923062 1.920000e-86 331.0
87 TraesCS5A01G223100 chr1B 98.919 185 2 0 3786 3970 110623000 110622816 1.920000e-86 331.0
88 TraesCS5A01G223100 chr1B 98.907 183 2 0 3786 3968 681774406 681774588 2.490000e-85 327.0
89 TraesCS5A01G223100 chrUn 97.895 190 4 0 3782 3971 395339967 395339778 6.920000e-86 329.0
90 TraesCS5A01G223100 chrUn 98.352 182 3 0 3787 3968 284001739 284001558 4.170000e-83 320.0
91 TraesCS5A01G223100 chrUn 84.940 332 22 13 1413 1719 371429430 371429102 2.510000e-80 311.0
92 TraesCS5A01G223100 chrUn 97.778 180 3 1 3793 3971 12801784 12801963 9.020000e-80 309.0
93 TraesCS5A01G223100 chrUn 95.789 190 6 2 3782 3970 277314236 277314048 1.170000e-78 305.0
94 TraesCS5A01G223100 chrUn 96.175 183 7 0 3787 3969 314724232 314724050 5.430000e-77 300.0
95 TraesCS5A01G223100 chrUn 96.175 183 6 1 3787 3969 379898108 379897927 1.950000e-76 298.0
96 TraesCS5A01G223100 chrUn 95.109 184 7 2 3787 3970 15978145 15977964 1.170000e-73 289.0
97 TraesCS5A01G223100 chrUn 95.082 183 8 1 3787 3969 379839434 379839253 4.220000e-73 287.0
98 TraesCS5A01G223100 chrUn 94.595 185 9 1 3786 3970 40706916 40706733 1.520000e-72 285.0
99 TraesCS5A01G223100 chrUn 88.000 125 8 2 1120 1238 371429552 371429429 3.480000e-29 141.0
100 TraesCS5A01G223100 chr7B 97.895 190 4 0 3782 3971 331021455 331021266 6.920000e-86 329.0
101 TraesCS5A01G223100 chr6B 98.913 184 2 0 3787 3970 475722868 475722685 6.920000e-86 329.0
102 TraesCS5A01G223100 chr4B 98.913 184 2 0 3787 3970 455621631 455621448 6.920000e-86 329.0
103 TraesCS5A01G223100 chr4B 98.370 184 3 0 3787 3970 193970678 193970495 3.220000e-84 324.0
104 TraesCS5A01G223100 chr4B 97.826 184 4 0 3787 3970 304887897 304888080 1.500000e-82 318.0
105 TraesCS5A01G223100 chr6D 98.895 181 2 0 3786 3966 128903061 128903241 3.220000e-84 324.0
106 TraesCS5A01G223100 chr6D 96.296 189 5 2 3787 3975 95293872 95293686 9.020000e-80 309.0
107 TraesCS5A01G223100 chr1D 98.324 179 3 0 3787 3965 159912202 159912380 1.940000e-81 315.0
108 TraesCS5A01G223100 chr1D 97.268 183 5 0 3786 3968 20212521 20212339 2.510000e-80 311.0
109 TraesCS5A01G223100 chr1D 97.222 180 5 0 3786 3965 221932712 221932891 1.170000e-78 305.0
110 TraesCS5A01G223100 chr1D 97.222 180 4 1 3786 3965 211684752 211684930 4.200000e-78 303.0
111 TraesCS5A01G223100 chr1D 96.196 184 6 1 3787 3970 166827296 166827478 5.430000e-77 300.0
112 TraesCS5A01G223100 chr1D 94.792 192 8 2 3779 3969 86918496 86918686 1.950000e-76 298.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G223100 chr5A 438924043 438933288 9245 False 17075.000000 17075 100.000000 1 9246 1 chr5A.!!$F2 9245
1 TraesCS5A01G223100 chr5A 525152804 525154475 1671 False 2278.000000 2278 91.532000 6453 8098 1 chr5A.!!$F3 1645
2 TraesCS5A01G223100 chr5A 547814410 547816139 1729 False 2137.000000 2137 89.438000 6397 8096 1 chr5A.!!$F5 1699
3 TraesCS5A01G223100 chr5A 535562397 535564140 1743 False 2041.000000 2041 88.285000 6392 8099 1 chr5A.!!$F4 1707
4 TraesCS5A01G223100 chr5A 81016640 81017522 882 False 1164.000000 1164 90.498000 8366 9246 1 chr5A.!!$F1 880
5 TraesCS5A01G223100 chr5A 509986268 509987218 950 True 1090.000000 1090 87.694000 7154 8096 1 chr5A.!!$R1 942
6 TraesCS5A01G223100 chr5A 438927063 438932314 5251 False 342.000000 412 92.994000 3021 8272 4 chr5A.!!$F6 5251
7 TraesCS5A01G223100 chr5D 337704815 337706272 1457 False 1825.000000 1825 89.449000 583 2054 1 chr5D.!!$F1 1471
8 TraesCS5A01G223100 chr5D 337710591 337712524 1933 False 761.400000 2440 94.505200 2041 8272 5 chr5D.!!$F4 6231
9 TraesCS5A01G223100 chr3B 452540919 452542816 1897 True 2228.000000 2228 87.861000 4208 6107 1 chr3B.!!$R2 1899
10 TraesCS5A01G223100 chr3B 768748062 768749944 1882 True 2228.000000 2228 88.006000 4208 6105 1 chr3B.!!$R3 1897
11 TraesCS5A01G223100 chr3B 14528197 14530076 1879 True 1317.000000 1317 79.376000 4221 6107 1 chr3B.!!$R1 1886
12 TraesCS5A01G223100 chr4A 604015644 604017369 1725 False 2104.000000 2104 89.143000 6407 8098 1 chr4A.!!$F1 1691
13 TraesCS5A01G223100 chr5B 396627312 396630621 3309 False 721.571429 2076 91.287714 1 8272 7 chr5B.!!$F4 8271
14 TraesCS5A01G223100 chr5B 396835162 396841824 6662 False 311.375000 523 87.811750 1 1719 8 chr5B.!!$F5 1718
15 TraesCS5A01G223100 chr6A 577761866 577763593 1727 True 2008.000000 2008 88.061000 6394 8099 1 chr6A.!!$R3 1705
16 TraesCS5A01G223100 chr1A 504741188 504742861 1673 True 1975.000000 1975 88.065000 6397 8096 1 chr1A.!!$R2 1699
17 TraesCS5A01G223100 chr1A 505001345 505002477 1132 True 1351.000000 1351 88.448000 6397 7530 1 chr1A.!!$R3 1133
18 TraesCS5A01G223100 chr7A 703523893 703525284 1391 True 1803.000000 1803 90.681000 6394 7733 1 chr7A.!!$R2 1339
19 TraesCS5A01G223100 chr7A 26037172 26038368 1196 False 1541.000000 1541 90.643000 6397 7540 1 chr7A.!!$F1 1143
20 TraesCS5A01G223100 chr7A 129867978 129868891 913 False 1218.000000 1218 91.186000 6395 7284 1 chr7A.!!$F3 889
21 TraesCS5A01G223100 chr7A 369295468 369296351 883 True 1203.000000 1203 91.290000 8366 9246 1 chr7A.!!$R1 880
22 TraesCS5A01G223100 chr7A 63408443 63409397 954 False 1123.000000 1123 88.235000 7154 8098 1 chr7A.!!$F2 944
23 TraesCS5A01G223100 chr3A 30174296 30175514 1218 True 1622.000000 1622 91.155000 6395 7579 1 chr3A.!!$R1 1184
24 TraesCS5A01G223100 chr3A 377384693 377385575 882 True 1214.000000 1214 91.525000 8366 9246 1 chr3A.!!$R2 880
25 TraesCS5A01G223100 chr3A 642103839 642104703 864 True 1214.000000 1214 92.032000 8384 9246 1 chr3A.!!$R5 862
26 TraesCS5A01G223100 chr3A 369048013 369048896 883 False 1192.000000 1192 91.073000 8366 9246 1 chr3A.!!$F2 880
27 TraesCS5A01G223100 chr3A 472727781 472728660 879 False 1177.000000 1177 90.827000 8366 9246 1 chr3A.!!$F3 880
28 TraesCS5A01G223100 chr3A 642056382 642057254 872 True 1171.000000 1171 90.951000 8378 9246 1 chr3A.!!$R4 868
29 TraesCS5A01G223100 chr3A 340258177 340259128 951 False 983.000000 983 85.685000 7154 8099 1 chr3A.!!$F1 945
30 TraesCS5A01G223100 chr2A 773848741 773849816 1075 True 1437.000000 1437 91.179000 6397 7446 1 chr2A.!!$R5 1049
31 TraesCS5A01G223100 chr2A 310644376 310645259 883 False 1208.000000 1208 91.403000 8366 9246 1 chr2A.!!$F1 880
32 TraesCS5A01G223100 chr2A 81719230 81720165 935 True 1195.000000 1195 90.171000 6590 7499 1 chr2A.!!$R2 909
33 TraesCS5A01G223100 chr2A 28152396 28153349 953 True 1053.000000 1053 87.010000 7154 8096 1 chr2A.!!$R1 942
34 TraesCS5A01G223100 chr2A 214422360 214423316 956 True 1050.000000 1050 86.818000 7154 8100 1 chr2A.!!$R4 946
35 TraesCS5A01G223100 chr2A 156464821 156465655 834 True 1026.000000 1026 89.392000 6397 7205 1 chr2A.!!$R3 808
36 TraesCS5A01G223100 chr7D 508905109 508905991 882 True 1181.000000 1181 90.847000 8366 9246 1 chr7D.!!$R1 880
37 TraesCS5A01G223100 chr2B 11222518 11223180 662 False 599.000000 599 83.107000 5451 6107 1 chr2B.!!$F1 656

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
382 581 0.539438 AGCCCTTTGAACAATCGCCA 60.539 50.0 0.0 0.0 0.0 5.69 F
1259 1527 0.039180 GTGGGGTCTTTACAAGGGGG 59.961 60.0 0.0 0.0 0.0 5.40 F
1260 1528 0.103823 TGGGGTCTTTACAAGGGGGA 60.104 55.0 0.0 0.0 0.0 4.81 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1347 1615 0.321671 ACGCCTGATGCTACAACAGT 59.678 50.0 4.47 0.00 33.37 3.55 R
2906 3220 0.040067 GCAAGGACTGAACCTTTGCG 60.040 55.0 0.00 0.00 46.61 4.85 R
8275 11179 4.884744 TGCCATATGTTTAACATAACGCCT 59.115 37.5 24.15 8.89 43.50 5.52 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 7.756272 TGATTAACATGTCAATCTGCAAATGTC 59.244 33.333 20.09 0.00 33.26 3.06
37 38 5.456548 AACATGTCAATCTGCAAATGTCA 57.543 34.783 0.00 0.00 0.00 3.58
38 39 5.654603 ACATGTCAATCTGCAAATGTCAT 57.345 34.783 0.00 0.00 0.00 3.06
92 93 1.615392 GGCTGCACTGGAGTTCATTTT 59.385 47.619 0.50 0.00 0.00 1.82
105 106 8.690203 TGGAGTTCATTTTGTGAAGAATCTAA 57.310 30.769 0.00 0.00 46.99 2.10
147 148 2.205022 ACATGTTCCATCCAGGTGTG 57.795 50.000 0.00 0.00 39.02 3.82
156 157 3.716353 TCCATCCAGGTGTGCATATTAGT 59.284 43.478 0.00 0.00 39.02 2.24
167 168 9.686683 AGGTGTGCATATTAGTTTTTCTAGATT 57.313 29.630 0.00 0.00 0.00 2.40
168 169 9.937175 GGTGTGCATATTAGTTTTTCTAGATTC 57.063 33.333 0.00 0.00 0.00 2.52
224 229 1.996191 CCTCCTTTTCGAAAGAGAGCG 59.004 52.381 22.18 15.66 43.69 5.03
265 270 2.223618 GCTGATCGACTGAGGGTTCTAC 60.224 54.545 0.00 0.00 0.00 2.59
293 298 7.992754 AGTCATTGTAATTGAAGAAGAGCTT 57.007 32.000 0.00 0.00 40.25 3.74
294 299 8.401490 AGTCATTGTAATTGAAGAAGAGCTTT 57.599 30.769 0.00 0.00 36.83 3.51
295 300 8.295288 AGTCATTGTAATTGAAGAAGAGCTTTG 58.705 33.333 0.00 0.00 36.83 2.77
296 301 7.061557 GTCATTGTAATTGAAGAAGAGCTTTGC 59.938 37.037 0.00 0.00 36.83 3.68
298 303 7.744087 TTGTAATTGAAGAAGAGCTTTGCTA 57.256 32.000 0.00 0.00 39.88 3.49
299 304 7.744087 TGTAATTGAAGAAGAGCTTTGCTAA 57.256 32.000 0.00 0.00 39.88 3.09
302 307 7.986085 AATTGAAGAAGAGCTTTGCTAAGTA 57.014 32.000 9.64 0.00 39.88 2.24
303 308 6.787085 TTGAAGAAGAGCTTTGCTAAGTAC 57.213 37.500 9.64 4.46 39.88 2.73
304 309 5.238583 TGAAGAAGAGCTTTGCTAAGTACC 58.761 41.667 9.64 0.03 39.88 3.34
305 310 4.891992 AGAAGAGCTTTGCTAAGTACCA 57.108 40.909 9.64 0.00 39.88 3.25
306 311 4.826556 AGAAGAGCTTTGCTAAGTACCAG 58.173 43.478 9.64 0.00 39.88 4.00
307 312 3.618690 AGAGCTTTGCTAAGTACCAGG 57.381 47.619 9.64 0.00 39.88 4.45
308 313 2.010497 GAGCTTTGCTAAGTACCAGGC 58.990 52.381 9.64 0.00 39.88 4.85
310 315 2.010497 GCTTTGCTAAGTACCAGGCTC 58.990 52.381 9.64 0.00 33.74 4.70
311 316 2.355209 GCTTTGCTAAGTACCAGGCTCT 60.355 50.000 9.64 0.00 33.74 4.09
312 317 3.265791 CTTTGCTAAGTACCAGGCTCTG 58.734 50.000 0.00 0.00 0.00 3.35
314 319 2.536066 TGCTAAGTACCAGGCTCTGAA 58.464 47.619 4.00 0.00 32.44 3.02
316 321 2.761208 GCTAAGTACCAGGCTCTGAAGA 59.239 50.000 4.00 0.00 32.44 2.87
317 322 3.386402 GCTAAGTACCAGGCTCTGAAGAT 59.614 47.826 4.00 0.00 32.44 2.40
318 323 3.902881 AAGTACCAGGCTCTGAAGATG 57.097 47.619 4.00 0.00 32.44 2.90
319 324 3.107402 AGTACCAGGCTCTGAAGATGA 57.893 47.619 4.00 0.00 32.44 2.92
320 325 3.445008 AGTACCAGGCTCTGAAGATGAA 58.555 45.455 4.00 0.00 32.44 2.57
322 327 4.472833 AGTACCAGGCTCTGAAGATGAATT 59.527 41.667 4.00 0.00 32.44 2.17
323 328 3.883669 ACCAGGCTCTGAAGATGAATTC 58.116 45.455 0.00 0.00 32.44 2.17
324 329 3.522750 ACCAGGCTCTGAAGATGAATTCT 59.477 43.478 7.05 0.00 35.70 2.40
325 330 4.718774 ACCAGGCTCTGAAGATGAATTCTA 59.281 41.667 7.05 0.00 33.05 2.10
344 543 6.798427 TTCTATTACAATCTCACCTGCTCT 57.202 37.500 0.00 0.00 0.00 4.09
345 544 6.154203 TCTATTACAATCTCACCTGCTCTG 57.846 41.667 0.00 0.00 0.00 3.35
362 561 1.003580 TCTGTGATTTGAGTGAGCCCC 59.996 52.381 0.00 0.00 0.00 5.80
368 567 4.664267 TGAGTGAGCCCCAGCCCT 62.664 66.667 0.00 0.00 41.25 5.19
382 581 0.539438 AGCCCTTTGAACAATCGCCA 60.539 50.000 0.00 0.00 0.00 5.69
399 598 2.802774 CGCCACACCATTTGCTTCTTTT 60.803 45.455 0.00 0.00 0.00 2.27
550 750 5.738619 TTGGTCTGTACAGATACATGTGT 57.261 39.130 27.54 0.10 40.57 3.72
551 751 6.844097 TTGGTCTGTACAGATACATGTGTA 57.156 37.500 27.54 11.97 40.57 2.90
644 844 7.361286 GGGATGCTTATTTATTAGTACTGCAGC 60.361 40.741 15.27 5.71 34.22 5.25
645 845 6.861065 TGCTTATTTATTAGTACTGCAGCC 57.139 37.500 15.27 4.53 0.00 4.85
646 846 6.591935 TGCTTATTTATTAGTACTGCAGCCT 58.408 36.000 15.27 12.69 0.00 4.58
647 847 6.483307 TGCTTATTTATTAGTACTGCAGCCTG 59.517 38.462 15.27 0.00 0.00 4.85
648 848 6.566753 GCTTATTTATTAGTACTGCAGCCTGC 60.567 42.308 15.27 10.45 45.29 4.85
785 986 0.949105 AACTCGCTTCGGCATTTCGT 60.949 50.000 0.00 0.00 41.88 3.85
841 1042 3.692367 CCGCCGCGATCGATCAAC 61.692 66.667 24.40 14.68 38.10 3.18
1099 1343 0.818296 TCTTACCTTCTCCTCGCTGC 59.182 55.000 0.00 0.00 0.00 5.25
1188 1439 0.884704 TTCCGTGCCAAGAACTCAGC 60.885 55.000 0.00 0.00 0.00 4.26
1194 1445 1.419762 TGCCAAGAACTCAGCAACCTA 59.580 47.619 0.00 0.00 30.97 3.08
1245 1513 7.521871 ACTAGAGAACTATATTTACGTGGGG 57.478 40.000 0.00 0.00 0.00 4.96
1246 1514 7.065504 ACTAGAGAACTATATTTACGTGGGGT 58.934 38.462 0.00 0.00 0.00 4.95
1247 1515 6.402456 AGAGAACTATATTTACGTGGGGTC 57.598 41.667 0.00 0.00 0.00 4.46
1248 1516 6.134754 AGAGAACTATATTTACGTGGGGTCT 58.865 40.000 0.00 0.00 0.00 3.85
1249 1517 6.610425 AGAGAACTATATTTACGTGGGGTCTT 59.390 38.462 0.00 0.00 0.00 3.01
1250 1518 7.125356 AGAGAACTATATTTACGTGGGGTCTTT 59.875 37.037 0.00 0.00 0.00 2.52
1251 1519 8.310122 AGAACTATATTTACGTGGGGTCTTTA 57.690 34.615 0.00 0.00 0.00 1.85
1252 1520 8.200120 AGAACTATATTTACGTGGGGTCTTTAC 58.800 37.037 0.00 0.00 0.00 2.01
1253 1521 7.422465 ACTATATTTACGTGGGGTCTTTACA 57.578 36.000 0.00 0.00 0.00 2.41
1254 1522 7.850193 ACTATATTTACGTGGGGTCTTTACAA 58.150 34.615 0.00 0.00 0.00 2.41
1255 1523 7.983484 ACTATATTTACGTGGGGTCTTTACAAG 59.017 37.037 0.00 0.00 0.00 3.16
1256 1524 3.405823 TTACGTGGGGTCTTTACAAGG 57.594 47.619 0.00 0.00 0.00 3.61
1257 1525 0.399075 ACGTGGGGTCTTTACAAGGG 59.601 55.000 0.00 0.00 0.00 3.95
1258 1526 0.322187 CGTGGGGTCTTTACAAGGGG 60.322 60.000 0.00 0.00 0.00 4.79
1259 1527 0.039180 GTGGGGTCTTTACAAGGGGG 59.961 60.000 0.00 0.00 0.00 5.40
1260 1528 0.103823 TGGGGTCTTTACAAGGGGGA 60.104 55.000 0.00 0.00 0.00 4.81
1261 1529 1.078115 GGGGTCTTTACAAGGGGGAA 58.922 55.000 0.00 0.00 0.00 3.97
1262 1530 1.644337 GGGGTCTTTACAAGGGGGAAT 59.356 52.381 0.00 0.00 0.00 3.01
1263 1531 2.623239 GGGGTCTTTACAAGGGGGAATG 60.623 54.545 0.00 0.00 0.00 2.67
1267 1535 4.263771 GGTCTTTACAAGGGGGAATGAGAA 60.264 45.833 0.00 0.00 0.00 2.87
1269 1537 5.952347 GTCTTTACAAGGGGGAATGAGAAAT 59.048 40.000 0.00 0.00 0.00 2.17
1273 1541 8.909423 TTTACAAGGGGGAATGAGAAATAAAT 57.091 30.769 0.00 0.00 0.00 1.40
1275 1543 9.998752 TTACAAGGGGGAATGAGAAATAAATAA 57.001 29.630 0.00 0.00 0.00 1.40
1281 1549 7.073208 GGGGAATGAGAAATAAATAAGGGGAA 58.927 38.462 0.00 0.00 0.00 3.97
1301 1569 5.985530 GGGAAACTCAAACCTCAATTTTCAG 59.014 40.000 0.00 0.00 0.00 3.02
1304 1572 5.596836 ACTCAAACCTCAATTTTCAGCAA 57.403 34.783 0.00 0.00 0.00 3.91
1333 1601 1.599542 GTTCCAGCCTGCGTCATAATC 59.400 52.381 0.00 0.00 0.00 1.75
1334 1602 1.123077 TCCAGCCTGCGTCATAATCT 58.877 50.000 0.00 0.00 0.00 2.40
1335 1603 1.069204 TCCAGCCTGCGTCATAATCTC 59.931 52.381 0.00 0.00 0.00 2.75
1336 1604 1.506493 CAGCCTGCGTCATAATCTCC 58.494 55.000 0.00 0.00 0.00 3.71
1337 1605 1.123077 AGCCTGCGTCATAATCTCCA 58.877 50.000 0.00 0.00 0.00 3.86
1338 1606 1.202580 AGCCTGCGTCATAATCTCCAC 60.203 52.381 0.00 0.00 0.00 4.02
1339 1607 1.871080 CCTGCGTCATAATCTCCACC 58.129 55.000 0.00 0.00 0.00 4.61
1340 1608 1.414181 CCTGCGTCATAATCTCCACCT 59.586 52.381 0.00 0.00 0.00 4.00
1341 1609 2.158900 CCTGCGTCATAATCTCCACCTT 60.159 50.000 0.00 0.00 0.00 3.50
1342 1610 3.126831 CTGCGTCATAATCTCCACCTTC 58.873 50.000 0.00 0.00 0.00 3.46
1343 1611 2.766263 TGCGTCATAATCTCCACCTTCT 59.234 45.455 0.00 0.00 0.00 2.85
1344 1612 3.958147 TGCGTCATAATCTCCACCTTCTA 59.042 43.478 0.00 0.00 0.00 2.10
1345 1613 4.038042 TGCGTCATAATCTCCACCTTCTAG 59.962 45.833 0.00 0.00 0.00 2.43
1346 1614 4.278669 GCGTCATAATCTCCACCTTCTAGA 59.721 45.833 0.00 0.00 0.00 2.43
1347 1615 5.221263 GCGTCATAATCTCCACCTTCTAGAA 60.221 44.000 4.81 4.81 0.00 2.10
1348 1616 6.210078 CGTCATAATCTCCACCTTCTAGAAC 58.790 44.000 0.00 0.00 0.00 3.01
1349 1617 6.039941 CGTCATAATCTCCACCTTCTAGAACT 59.960 42.308 0.00 0.00 0.00 3.01
1350 1618 7.206687 GTCATAATCTCCACCTTCTAGAACTG 58.793 42.308 0.00 0.00 0.00 3.16
1351 1619 6.897966 TCATAATCTCCACCTTCTAGAACTGT 59.102 38.462 0.00 0.00 0.00 3.55
1357 1625 4.021368 TCCACCTTCTAGAACTGTTGTAGC 60.021 45.833 17.25 0.00 0.00 3.58
1379 1647 4.446051 GCATCAGGCGTAGAAAAGTAGATC 59.554 45.833 0.00 0.00 0.00 2.75
1380 1648 5.592054 CATCAGGCGTAGAAAAGTAGATCA 58.408 41.667 0.00 0.00 0.00 2.92
1385 1653 3.552294 GCGTAGAAAAGTAGATCAGGTGC 59.448 47.826 0.00 0.00 0.00 5.01
1389 1657 5.091261 AGAAAAGTAGATCAGGTGCGATT 57.909 39.130 0.00 0.00 0.00 3.34
1390 1658 5.112686 AGAAAAGTAGATCAGGTGCGATTC 58.887 41.667 0.00 0.00 0.00 2.52
1392 1660 1.338337 AGTAGATCAGGTGCGATTCGG 59.662 52.381 8.34 0.00 0.00 4.30
1393 1661 1.337071 GTAGATCAGGTGCGATTCGGA 59.663 52.381 8.34 1.30 0.00 4.55
1396 1664 2.158900 AGATCAGGTGCGATTCGGATTT 60.159 45.455 8.34 0.00 0.00 2.17
1403 1671 3.417185 GTGCGATTCGGATTTGTTCTTC 58.583 45.455 8.34 0.00 0.00 2.87
1404 1672 2.418628 TGCGATTCGGATTTGTTCTTCC 59.581 45.455 8.34 0.00 0.00 3.46
1408 1676 4.201822 CGATTCGGATTTGTTCTTCCCTTC 60.202 45.833 0.00 0.00 0.00 3.46
1411 1679 4.324267 TCGGATTTGTTCTTCCCTTCTTC 58.676 43.478 0.00 0.00 0.00 2.87
1450 1718 4.450053 AGGCACAAGATAGAAGAATCAGC 58.550 43.478 0.00 0.00 0.00 4.26
1777 2085 2.379634 CGGCGAATGCTTGACGACA 61.380 57.895 0.00 0.00 42.25 4.35
1780 2088 0.443869 GCGAATGCTTGACGACATGT 59.556 50.000 0.00 0.00 38.39 3.21
1783 2091 2.222663 CGAATGCTTGACGACATGTGAG 60.223 50.000 1.15 0.00 0.00 3.51
1801 2109 2.263540 GGTAAGGCGGCTCGACAA 59.736 61.111 13.70 0.00 37.34 3.18
1813 2121 0.179215 CTCGACAAAATGCAGCGTCC 60.179 55.000 0.00 0.00 0.00 4.79
1839 2147 4.154347 GAGGCTGCCGGACTCCAG 62.154 72.222 13.96 3.56 44.14 3.86
1842 2150 4.767255 GCTGCCGGACTCCAGTGG 62.767 72.222 5.05 1.40 0.00 4.00
1948 2256 0.771127 TCCCCTCAAACTCCAACTGG 59.229 55.000 0.00 0.00 0.00 4.00
2020 2328 9.338622 GTGCATACCTAAGATTTGGTAGTATTT 57.661 33.333 10.81 0.00 40.80 1.40
2072 2380 7.488150 GCCCAAGTACTTGATTTTAGTTTATGC 59.512 37.037 32.50 11.81 42.93 3.14
2182 2495 6.651225 AGTTTTCAAGATCACTTACTACTGGC 59.349 38.462 0.00 0.00 34.70 4.85
2228 2541 8.662781 TTGGTATAATAGCTTAACTGCTCTTG 57.337 34.615 0.00 0.00 42.97 3.02
2229 2542 6.706270 TGGTATAATAGCTTAACTGCTCTTGC 59.294 38.462 0.00 0.00 42.97 4.01
2243 2556 4.494350 GCTCTTGCAAGTTGATTCTCAA 57.506 40.909 25.19 1.75 39.41 3.02
2244 2557 4.863491 GCTCTTGCAAGTTGATTCTCAAA 58.137 39.130 25.19 1.23 37.34 2.69
2245 2558 5.284079 GCTCTTGCAAGTTGATTCTCAAAA 58.716 37.500 25.19 1.02 37.34 2.44
2246 2559 5.750067 GCTCTTGCAAGTTGATTCTCAAAAA 59.250 36.000 25.19 0.58 37.34 1.94
2347 2660 7.962964 TTTCATAGGTTCAGTTCACTTACTG 57.037 36.000 0.00 0.00 45.46 2.74
2358 2672 6.326375 CAGTTCACTTACTGATGGTCTAGTC 58.674 44.000 0.00 0.00 46.72 2.59
2362 2676 7.297936 TCACTTACTGATGGTCTAGTCAAAA 57.702 36.000 0.00 0.00 0.00 2.44
2393 2707 2.416162 GGCTGTTCCAGAGACTAAGACG 60.416 54.545 0.00 0.00 32.44 4.18
2461 2775 1.273327 GAAGCCCAAAACACCCATGAG 59.727 52.381 0.00 0.00 0.00 2.90
2612 2926 1.600916 AACGGCAGCAGAACCTTCC 60.601 57.895 0.00 0.00 0.00 3.46
2627 2941 1.339151 CCTTCCCTTGGTACAGAGCAC 60.339 57.143 0.00 0.00 42.39 4.40
2711 3025 1.452145 GGTTGGAAGCGCACCTCAAA 61.452 55.000 20.82 7.40 0.00 2.69
2749 3063 2.012673 GAACATCTCAGCCACATCCAC 58.987 52.381 0.00 0.00 0.00 4.02
2801 3115 1.518302 GCATGCCATCAATGTGCCA 59.482 52.632 6.36 0.00 0.00 4.92
2826 3140 2.079925 GTTCAGAGAAGCCACCATCAC 58.920 52.381 0.00 0.00 0.00 3.06
2834 3148 2.606587 GCCACCATCACCCTGGAGT 61.607 63.158 0.00 0.00 39.73 3.85
2870 3184 4.098055 AGCTATATGTACCAGCGAATCG 57.902 45.455 0.00 0.00 40.29 3.34
2906 3220 0.618458 TGAGGGGCATAAGACACCAC 59.382 55.000 0.00 0.00 0.00 4.16
3015 3329 3.248602 CCAAGCTCACTGTACTTGTGAAC 59.751 47.826 18.01 15.00 42.85 3.18
8272 11176 1.339291 TCTGCCGATCTGTGCATCTAG 59.661 52.381 0.00 0.00 36.79 2.43
8273 11177 1.339291 CTGCCGATCTGTGCATCTAGA 59.661 52.381 0.00 0.00 36.79 2.43
8274 11178 1.756538 TGCCGATCTGTGCATCTAGAA 59.243 47.619 0.00 0.00 31.31 2.10
8275 11179 2.168313 TGCCGATCTGTGCATCTAGAAA 59.832 45.455 0.00 0.00 31.31 2.52
8276 11180 2.799412 GCCGATCTGTGCATCTAGAAAG 59.201 50.000 0.00 0.00 0.00 2.62
8277 11181 3.388308 CCGATCTGTGCATCTAGAAAGG 58.612 50.000 0.00 0.00 0.00 3.11
8278 11182 2.799412 CGATCTGTGCATCTAGAAAGGC 59.201 50.000 0.00 1.77 0.00 4.35
8279 11183 2.299993 TCTGTGCATCTAGAAAGGCG 57.700 50.000 0.00 0.00 0.00 5.52
8280 11184 1.550524 TCTGTGCATCTAGAAAGGCGT 59.449 47.619 0.00 0.00 0.00 5.68
8281 11185 2.028112 TCTGTGCATCTAGAAAGGCGTT 60.028 45.455 0.00 0.00 0.00 4.84
8282 11186 3.194755 TCTGTGCATCTAGAAAGGCGTTA 59.805 43.478 0.00 0.00 0.00 3.18
8283 11187 4.122776 CTGTGCATCTAGAAAGGCGTTAT 58.877 43.478 0.00 0.00 0.00 1.89
8284 11188 3.871006 TGTGCATCTAGAAAGGCGTTATG 59.129 43.478 0.00 0.00 0.00 1.90
8285 11189 3.871594 GTGCATCTAGAAAGGCGTTATGT 59.128 43.478 0.00 0.00 0.00 2.29
8286 11190 4.332819 GTGCATCTAGAAAGGCGTTATGTT 59.667 41.667 0.00 0.00 0.00 2.71
8287 11191 5.522460 GTGCATCTAGAAAGGCGTTATGTTA 59.478 40.000 0.00 0.00 0.00 2.41
8288 11192 6.036735 GTGCATCTAGAAAGGCGTTATGTTAA 59.963 38.462 0.00 0.00 0.00 2.01
8289 11193 6.596106 TGCATCTAGAAAGGCGTTATGTTAAA 59.404 34.615 0.00 0.00 0.00 1.52
8290 11194 6.905609 GCATCTAGAAAGGCGTTATGTTAAAC 59.094 38.462 0.00 0.00 0.00 2.01
8291 11195 7.413657 GCATCTAGAAAGGCGTTATGTTAAACA 60.414 37.037 0.00 0.00 0.00 2.83
8292 11196 8.612619 CATCTAGAAAGGCGTTATGTTAAACAT 58.387 33.333 0.00 0.00 42.35 2.71
8293 11197 9.826574 ATCTAGAAAGGCGTTATGTTAAACATA 57.173 29.630 0.00 0.00 39.88 2.29
8294 11198 9.826574 TCTAGAAAGGCGTTATGTTAAACATAT 57.173 29.630 0.00 0.00 40.41 1.78
8295 11199 9.864034 CTAGAAAGGCGTTATGTTAAACATATG 57.136 33.333 0.00 0.00 40.41 1.78
8296 11200 7.703328 AGAAAGGCGTTATGTTAAACATATGG 58.297 34.615 7.80 0.00 40.41 2.74
8297 11201 5.432885 AGGCGTTATGTTAAACATATGGC 57.567 39.130 7.80 0.92 40.41 4.40
8298 11202 4.884744 AGGCGTTATGTTAAACATATGGCA 59.115 37.500 7.80 0.00 40.41 4.92
8299 11203 5.008613 AGGCGTTATGTTAAACATATGGCAG 59.991 40.000 7.80 0.00 40.41 4.85
8300 11204 5.220970 GGCGTTATGTTAAACATATGGCAGT 60.221 40.000 7.80 0.00 40.41 4.40
8301 11205 6.017770 GGCGTTATGTTAAACATATGGCAGTA 60.018 38.462 7.80 0.00 40.41 2.74
8302 11206 6.849305 GCGTTATGTTAAACATATGGCAGTAC 59.151 38.462 7.80 0.00 40.41 2.73
8303 11207 7.254658 GCGTTATGTTAAACATATGGCAGTACT 60.255 37.037 7.80 0.00 40.41 2.73
8304 11208 9.251792 CGTTATGTTAAACATATGGCAGTACTA 57.748 33.333 7.80 0.00 40.41 1.82
8308 11212 8.850007 TGTTAAACATATGGCAGTACTACAAA 57.150 30.769 7.80 0.00 0.00 2.83
8309 11213 9.456147 TGTTAAACATATGGCAGTACTACAAAT 57.544 29.630 7.80 0.00 0.00 2.32
8315 11219 9.456147 ACATATGGCAGTACTACAAATAAAACA 57.544 29.630 7.80 0.00 0.00 2.83
8316 11220 9.716507 CATATGGCAGTACTACAAATAAAACAC 57.283 33.333 0.00 0.00 0.00 3.32
8317 11221 7.753309 ATGGCAGTACTACAAATAAAACACA 57.247 32.000 0.00 0.00 0.00 3.72
8318 11222 7.569639 TGGCAGTACTACAAATAAAACACAA 57.430 32.000 0.00 0.00 0.00 3.33
8319 11223 7.997482 TGGCAGTACTACAAATAAAACACAAA 58.003 30.769 0.00 0.00 0.00 2.83
8320 11224 8.467598 TGGCAGTACTACAAATAAAACACAAAA 58.532 29.630 0.00 0.00 0.00 2.44
8321 11225 8.748582 GGCAGTACTACAAATAAAACACAAAAC 58.251 33.333 0.00 0.00 0.00 2.43
8322 11226 9.291664 GCAGTACTACAAATAAAACACAAAACA 57.708 29.630 0.00 0.00 0.00 2.83
8331 11235 9.790433 CAAATAAAACACAAAACATGTAATCGG 57.210 29.630 0.00 0.00 41.46 4.18
8332 11236 9.751542 AAATAAAACACAAAACATGTAATCGGA 57.248 25.926 0.00 0.00 41.46 4.55
8333 11237 9.921637 AATAAAACACAAAACATGTAATCGGAT 57.078 25.926 0.00 0.00 41.46 4.18
8334 11238 7.636259 AAAACACAAAACATGTAATCGGATG 57.364 32.000 0.00 0.00 41.46 3.51
8335 11239 6.567687 AACACAAAACATGTAATCGGATGA 57.432 33.333 0.00 0.00 41.46 2.92
8336 11240 5.938322 ACACAAAACATGTAATCGGATGAC 58.062 37.500 0.00 0.00 41.46 3.06
8337 11241 5.106317 ACACAAAACATGTAATCGGATGACC 60.106 40.000 0.00 0.00 41.46 4.02
8348 11252 3.233355 GGATGACCGTGCTGAACTT 57.767 52.632 0.00 0.00 0.00 2.66
8349 11253 0.798776 GGATGACCGTGCTGAACTTG 59.201 55.000 0.00 0.00 0.00 3.16
8350 11254 0.166814 GATGACCGTGCTGAACTTGC 59.833 55.000 0.00 0.00 0.00 4.01
8351 11255 0.534877 ATGACCGTGCTGAACTTGCA 60.535 50.000 0.00 0.00 38.19 4.08
8352 11256 0.746204 TGACCGTGCTGAACTTGCAA 60.746 50.000 0.00 0.00 42.41 4.08
8353 11257 0.380378 GACCGTGCTGAACTTGCAAA 59.620 50.000 0.00 0.00 42.41 3.68
8371 11275 6.048732 TGCAAAGTAGTTCATCATACCTGA 57.951 37.500 0.00 0.00 35.41 3.86
8376 11280 1.476891 AGTTCATCATACCTGACGCGT 59.523 47.619 13.85 13.85 33.22 6.01
8412 11316 2.368875 GGAACGACACCTATGGGATCAT 59.631 50.000 0.25 0.00 37.40 2.45
8460 11364 1.198713 GGGGTCATGAGAAGAGCAGA 58.801 55.000 0.00 0.00 35.30 4.26
8529 11433 3.116096 TGCATAAGACCCTAGTCCTGT 57.884 47.619 0.00 0.00 44.72 4.00
8533 11437 5.486063 TGCATAAGACCCTAGTCCTGTTTTA 59.514 40.000 0.00 0.00 44.72 1.52
8599 11504 3.874392 GCTGTGCCATACCAAAAATCT 57.126 42.857 0.00 0.00 0.00 2.40
8618 11523 0.041238 TGAATCCCTCTCCTGGTCGT 59.959 55.000 0.00 0.00 0.00 4.34
8655 11563 6.956102 TTATAGGAAAAAGGGGACACAGTA 57.044 37.500 0.00 0.00 0.00 2.74
8689 11597 4.760047 AAGGCCTACAGTGCGCGG 62.760 66.667 5.16 0.00 0.00 6.46
8709 11618 2.198406 GGCTTATCGCACGACATTACA 58.802 47.619 0.00 0.00 41.67 2.41
8756 11665 7.118390 GCTATGTAGGTGTCCATTAGCTTTATG 59.882 40.741 0.00 0.00 0.00 1.90
8894 11803 2.439507 GGTAGGGCCTTCATGAAGATCA 59.560 50.000 32.49 12.64 40.79 2.92
8903 11812 1.134310 TCATGAAGATCAGCATGCCGT 60.134 47.619 15.66 0.00 41.18 5.68
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
36 37 1.426621 CAGCTGCACCGTGCTAATG 59.573 57.895 23.52 14.70 45.31 1.90
37 38 2.401766 GCAGCTGCACCGTGCTAAT 61.402 57.895 33.36 7.04 45.31 1.73
38 39 3.049674 GCAGCTGCACCGTGCTAA 61.050 61.111 33.36 4.23 45.31 3.09
61 62 2.046988 TGCAGCCACCGACATGAG 60.047 61.111 0.00 0.00 0.00 2.90
92 93 7.606456 GGGACATAAACACTTAGATTCTTCACA 59.394 37.037 0.00 0.00 0.00 3.58
105 106 4.164981 TGACACCTAGGGACATAAACACT 58.835 43.478 14.81 0.00 0.00 3.55
204 209 1.996191 CGCTCTCTTTCGAAAAGGAGG 59.004 52.381 26.62 18.20 38.71 4.30
224 229 2.356069 GCACTGGAAATCGGAGAAATCC 59.644 50.000 0.00 0.00 43.58 3.01
265 270 8.272176 GCTCTTCTTCAATTACAATGACTATCG 58.728 37.037 0.00 0.00 0.00 2.92
272 277 7.088905 AGCAAAGCTCTTCTTCAATTACAATG 58.911 34.615 0.00 0.00 30.62 2.82
273 278 7.224522 AGCAAAGCTCTTCTTCAATTACAAT 57.775 32.000 0.00 0.00 30.62 2.71
293 298 2.536066 TCAGAGCCTGGTACTTAGCAA 58.464 47.619 0.00 0.00 32.78 3.91
294 299 2.231716 TCAGAGCCTGGTACTTAGCA 57.768 50.000 0.00 0.00 31.51 3.49
295 300 2.761208 TCTTCAGAGCCTGGTACTTAGC 59.239 50.000 0.00 0.00 31.51 3.09
296 301 4.646945 TCATCTTCAGAGCCTGGTACTTAG 59.353 45.833 0.00 0.00 31.51 2.18
298 303 3.445008 TCATCTTCAGAGCCTGGTACTT 58.555 45.455 0.00 0.00 31.51 2.24
299 304 3.107402 TCATCTTCAGAGCCTGGTACT 57.893 47.619 0.00 0.00 31.51 2.73
302 307 3.522750 AGAATTCATCTTCAGAGCCTGGT 59.477 43.478 8.44 0.00 33.39 4.00
303 308 4.153673 AGAATTCATCTTCAGAGCCTGG 57.846 45.455 8.44 0.00 33.39 4.45
304 309 7.930325 TGTAATAGAATTCATCTTCAGAGCCTG 59.070 37.037 8.44 0.00 39.71 4.85
305 310 8.027524 TGTAATAGAATTCATCTTCAGAGCCT 57.972 34.615 8.44 0.00 39.71 4.58
306 311 8.668510 TTGTAATAGAATTCATCTTCAGAGCC 57.331 34.615 8.44 0.00 39.71 4.70
314 319 9.775854 CAGGTGAGATTGTAATAGAATTCATCT 57.224 33.333 8.44 5.13 42.48 2.90
316 321 8.216423 AGCAGGTGAGATTGTAATAGAATTCAT 58.784 33.333 8.44 0.00 0.00 2.57
317 322 7.568349 AGCAGGTGAGATTGTAATAGAATTCA 58.432 34.615 8.44 0.00 0.00 2.57
318 323 7.930865 AGAGCAGGTGAGATTGTAATAGAATTC 59.069 37.037 0.00 0.00 0.00 2.17
319 324 7.714377 CAGAGCAGGTGAGATTGTAATAGAATT 59.286 37.037 0.00 0.00 0.00 2.17
320 325 7.147585 ACAGAGCAGGTGAGATTGTAATAGAAT 60.148 37.037 0.00 0.00 0.00 2.40
322 327 5.658634 ACAGAGCAGGTGAGATTGTAATAGA 59.341 40.000 0.00 0.00 0.00 1.98
323 328 5.752472 CACAGAGCAGGTGAGATTGTAATAG 59.248 44.000 0.00 0.00 38.54 1.73
324 329 5.422012 TCACAGAGCAGGTGAGATTGTAATA 59.578 40.000 1.56 0.00 40.16 0.98
325 330 4.223700 TCACAGAGCAGGTGAGATTGTAAT 59.776 41.667 1.56 0.00 40.16 1.89
344 543 0.770499 TGGGGCTCACTCAAATCACA 59.230 50.000 0.00 0.00 0.00 3.58
345 544 1.457346 CTGGGGCTCACTCAAATCAC 58.543 55.000 0.00 0.00 0.00 3.06
362 561 0.109132 GGCGATTGTTCAAAGGGCTG 60.109 55.000 0.00 0.00 0.00 4.85
368 567 1.393603 TGGTGTGGCGATTGTTCAAA 58.606 45.000 0.00 0.00 0.00 2.69
382 581 5.596836 TCTGAAAAAGAAGCAAATGGTGT 57.403 34.783 0.00 0.00 29.54 4.16
399 598 4.261572 CCAAAAGTTGGCGATTCTTCTGAA 60.262 41.667 0.00 0.00 45.17 3.02
460 660 8.795786 TTCAAACGAAATCGAAATCAAATTCT 57.204 26.923 10.16 0.00 43.02 2.40
550 750 4.868268 AGGAGTACTGCCTGTTCACTATA 58.132 43.478 11.20 0.00 33.59 1.31
551 751 3.714144 AGGAGTACTGCCTGTTCACTAT 58.286 45.455 11.20 0.00 33.59 2.12
644 844 4.378774 CAGTCAAAGATATCTCCTGCAGG 58.621 47.826 27.87 27.87 0.00 4.85
645 845 4.100653 TCCAGTCAAAGATATCTCCTGCAG 59.899 45.833 6.78 6.78 0.00 4.41
646 846 4.033009 TCCAGTCAAAGATATCTCCTGCA 58.967 43.478 5.51 0.00 0.00 4.41
647 847 4.502950 CCTCCAGTCAAAGATATCTCCTGC 60.503 50.000 5.51 3.99 0.00 4.85
648 848 4.898265 TCCTCCAGTCAAAGATATCTCCTG 59.102 45.833 5.51 7.04 0.00 3.86
732 933 0.317436 GCATGCGTCGGAAACAAACA 60.317 50.000 0.00 0.00 0.00 2.83
785 986 0.601841 GTCGCAAAGGAAACCGGAGA 60.602 55.000 9.46 0.00 0.00 3.71
841 1042 1.006832 GTCCCGATCACAACGAATGG 58.993 55.000 0.00 0.00 0.00 3.16
982 1191 4.394712 CGGTCTGGTCCCAGTGGC 62.395 72.222 12.88 5.28 43.96 5.01
1110 1354 0.385390 ACAAACAAAAGAGCGGCCAG 59.615 50.000 2.24 0.00 0.00 4.85
1116 1360 6.368791 AGGAAAACTGAAACAAACAAAAGAGC 59.631 34.615 0.00 0.00 0.00 4.09
1163 1414 1.533731 GTTCTTGGCACGGAATCGAAA 59.466 47.619 5.57 0.00 40.11 3.46
1173 1424 0.312102 GGTTGCTGAGTTCTTGGCAC 59.688 55.000 0.00 0.00 34.30 5.01
1174 1425 0.183492 AGGTTGCTGAGTTCTTGGCA 59.817 50.000 0.00 0.00 0.00 4.92
1188 1439 0.828022 TATCCCAGCGGTGTAGGTTG 59.172 55.000 14.40 0.00 0.00 3.77
1194 1445 0.828677 GTAAGGTATCCCAGCGGTGT 59.171 55.000 14.40 0.00 0.00 4.16
1247 1515 7.954666 TTATTTCTCATTCCCCCTTGTAAAG 57.045 36.000 0.00 0.00 45.69 1.85
1248 1516 8.909423 ATTTATTTCTCATTCCCCCTTGTAAA 57.091 30.769 0.00 0.00 0.00 2.01
1249 1517 9.998752 TTATTTATTTCTCATTCCCCCTTGTAA 57.001 29.630 0.00 0.00 0.00 2.41
1250 1518 9.640952 CTTATTTATTTCTCATTCCCCCTTGTA 57.359 33.333 0.00 0.00 0.00 2.41
1251 1519 7.565029 CCTTATTTATTTCTCATTCCCCCTTGT 59.435 37.037 0.00 0.00 0.00 3.16
1252 1520 7.015584 CCCTTATTTATTTCTCATTCCCCCTTG 59.984 40.741 0.00 0.00 0.00 3.61
1253 1521 7.075797 CCCTTATTTATTTCTCATTCCCCCTT 58.924 38.462 0.00 0.00 0.00 3.95
1254 1522 6.413207 CCCCTTATTTATTTCTCATTCCCCCT 60.413 42.308 0.00 0.00 0.00 4.79
1255 1523 5.780282 CCCCTTATTTATTTCTCATTCCCCC 59.220 44.000 0.00 0.00 0.00 5.40
1256 1524 6.620429 TCCCCTTATTTATTTCTCATTCCCC 58.380 40.000 0.00 0.00 0.00 4.81
1257 1525 8.421784 GTTTCCCCTTATTTATTTCTCATTCCC 58.578 37.037 0.00 0.00 0.00 3.97
1258 1526 9.201989 AGTTTCCCCTTATTTATTTCTCATTCC 57.798 33.333 0.00 0.00 0.00 3.01
1260 1528 9.768215 TGAGTTTCCCCTTATTTATTTCTCATT 57.232 29.630 0.00 0.00 0.00 2.57
1261 1529 9.768215 TTGAGTTTCCCCTTATTTATTTCTCAT 57.232 29.630 0.00 0.00 0.00 2.90
1262 1530 9.594936 TTTGAGTTTCCCCTTATTTATTTCTCA 57.405 29.630 0.00 0.00 0.00 3.27
1263 1531 9.856488 GTTTGAGTTTCCCCTTATTTATTTCTC 57.144 33.333 0.00 0.00 0.00 2.87
1267 1535 7.953493 TGAGGTTTGAGTTTCCCCTTATTTATT 59.047 33.333 0.00 0.00 0.00 1.40
1269 1537 6.854578 TGAGGTTTGAGTTTCCCCTTATTTA 58.145 36.000 0.00 0.00 0.00 1.40
1273 1541 4.799715 TTGAGGTTTGAGTTTCCCCTTA 57.200 40.909 0.00 0.00 0.00 2.69
1275 1543 3.903530 ATTGAGGTTTGAGTTTCCCCT 57.096 42.857 0.00 0.00 0.00 4.79
1281 1549 5.596836 TGCTGAAAATTGAGGTTTGAGTT 57.403 34.783 0.00 0.00 0.00 3.01
1320 1588 1.414181 AGGTGGAGATTATGACGCAGG 59.586 52.381 0.00 0.00 0.00 4.85
1333 1601 4.608948 ACAACAGTTCTAGAAGGTGGAG 57.391 45.455 15.31 10.81 0.00 3.86
1334 1602 4.021368 GCTACAACAGTTCTAGAAGGTGGA 60.021 45.833 15.31 6.57 0.00 4.02
1335 1603 4.246458 GCTACAACAGTTCTAGAAGGTGG 58.754 47.826 5.12 7.66 0.00 4.61
1336 1604 4.883083 TGCTACAACAGTTCTAGAAGGTG 58.117 43.478 5.12 6.82 0.00 4.00
1337 1605 5.246203 TGATGCTACAACAGTTCTAGAAGGT 59.754 40.000 5.12 4.64 0.00 3.50
1338 1606 5.724328 TGATGCTACAACAGTTCTAGAAGG 58.276 41.667 5.12 3.96 0.00 3.46
1339 1607 5.809562 CCTGATGCTACAACAGTTCTAGAAG 59.190 44.000 5.12 0.00 33.37 2.85
1340 1608 5.724328 CCTGATGCTACAACAGTTCTAGAA 58.276 41.667 0.00 0.00 33.37 2.10
1341 1609 4.382040 GCCTGATGCTACAACAGTTCTAGA 60.382 45.833 0.00 0.00 33.37 2.43
1342 1610 3.868077 GCCTGATGCTACAACAGTTCTAG 59.132 47.826 4.47 0.00 33.37 2.43
1343 1611 3.676049 CGCCTGATGCTACAACAGTTCTA 60.676 47.826 4.47 0.00 33.37 2.10
1344 1612 2.704572 GCCTGATGCTACAACAGTTCT 58.295 47.619 4.47 0.00 33.37 3.01
1345 1613 1.394917 CGCCTGATGCTACAACAGTTC 59.605 52.381 4.47 0.00 33.37 3.01
1346 1614 1.270839 ACGCCTGATGCTACAACAGTT 60.271 47.619 4.47 0.00 33.37 3.16
1347 1615 0.321671 ACGCCTGATGCTACAACAGT 59.678 50.000 4.47 0.00 33.37 3.55
1348 1616 2.159240 TCTACGCCTGATGCTACAACAG 60.159 50.000 0.00 0.00 38.05 3.16
1349 1617 1.822371 TCTACGCCTGATGCTACAACA 59.178 47.619 0.00 0.00 38.05 3.33
1350 1618 2.579207 TCTACGCCTGATGCTACAAC 57.421 50.000 0.00 0.00 38.05 3.32
1351 1619 3.603158 TTTCTACGCCTGATGCTACAA 57.397 42.857 0.00 0.00 38.05 2.41
1357 1625 5.592054 TGATCTACTTTTCTACGCCTGATG 58.408 41.667 0.00 0.00 0.00 3.07
1371 1639 2.223829 CCGAATCGCACCTGATCTACTT 60.224 50.000 0.00 0.00 0.00 2.24
1379 1647 1.086696 ACAAATCCGAATCGCACCTG 58.913 50.000 0.00 0.00 0.00 4.00
1380 1648 1.737793 GAACAAATCCGAATCGCACCT 59.262 47.619 0.00 0.00 0.00 4.00
1385 1653 3.270877 AGGGAAGAACAAATCCGAATCG 58.729 45.455 0.00 0.00 36.54 3.34
1389 1657 4.041691 AGAAGAAGGGAAGAACAAATCCGA 59.958 41.667 0.00 0.00 36.54 4.55
1390 1658 4.327680 AGAAGAAGGGAAGAACAAATCCG 58.672 43.478 0.00 0.00 36.54 4.18
1392 1660 5.106515 CCGAAGAAGAAGGGAAGAACAAATC 60.107 44.000 0.00 0.00 0.00 2.17
1393 1661 4.762251 CCGAAGAAGAAGGGAAGAACAAAT 59.238 41.667 0.00 0.00 0.00 2.32
1396 1664 2.969950 TCCGAAGAAGAAGGGAAGAACA 59.030 45.455 0.00 0.00 0.00 3.18
1403 1671 3.618690 AACAGATCCGAAGAAGAAGGG 57.381 47.619 0.00 0.00 0.00 3.95
1404 1672 4.153117 CACAAACAGATCCGAAGAAGAAGG 59.847 45.833 0.00 0.00 0.00 3.46
1408 1676 3.681897 CCTCACAAACAGATCCGAAGAAG 59.318 47.826 0.00 0.00 0.00 2.85
1411 1679 1.734465 GCCTCACAAACAGATCCGAAG 59.266 52.381 0.00 0.00 0.00 3.79
1493 1761 4.016444 TGAAGAGGAACAGTTTTGCAAGT 58.984 39.130 0.00 0.00 0.00 3.16
1494 1762 4.637483 TGAAGAGGAACAGTTTTGCAAG 57.363 40.909 0.00 0.00 0.00 4.01
1502 1770 3.326006 TCTGCTGATTGAAGAGGAACAGT 59.674 43.478 0.00 0.00 0.00 3.55
1549 1823 1.940883 CTACACCAGCGCGTCCCTTA 61.941 60.000 8.43 0.00 0.00 2.69
1777 2085 1.972660 GAGCCGCCTTACCCTCACAT 61.973 60.000 0.00 0.00 0.00 3.21
1780 2088 3.458163 CGAGCCGCCTTACCCTCA 61.458 66.667 0.00 0.00 0.00 3.86
1783 2091 2.791501 TTTGTCGAGCCGCCTTACCC 62.792 60.000 0.00 0.00 0.00 3.69
1801 2109 1.709147 GCTCATCGGACGCTGCATTT 61.709 55.000 0.00 0.00 0.00 2.32
1833 2141 2.203998 CCCTCACCCCACTGGAGT 60.204 66.667 0.00 0.00 38.00 3.85
1839 2147 1.678970 GACAATGCCCTCACCCCAC 60.679 63.158 0.00 0.00 0.00 4.61
1842 2150 0.324645 AATGGACAATGCCCTCACCC 60.325 55.000 0.00 0.00 0.00 4.61
2020 2328 8.465999 CAGTAAACTTGCCATGTTCCATATTTA 58.534 33.333 0.00 0.00 0.00 1.40
2072 2380 8.466086 AAAACTAAGCAAAACAGAAAGAACAG 57.534 30.769 0.00 0.00 0.00 3.16
2157 2470 6.651225 GCCAGTAGTAAGTGATCTTGAAAACT 59.349 38.462 0.00 0.00 35.36 2.66
2182 2495 5.278463 CCAAGTTACATGAAGTTTGGTCAGG 60.278 44.000 0.00 0.00 32.15 3.86
2244 2557 6.759497 AGTTGACTTGTAAGAGCAGTTTTT 57.241 33.333 0.00 0.00 0.00 1.94
2245 2558 6.555315 CAAGTTGACTTGTAAGAGCAGTTTT 58.445 36.000 14.23 0.00 46.11 2.43
2246 2559 6.124088 CAAGTTGACTTGTAAGAGCAGTTT 57.876 37.500 14.23 0.00 46.11 2.66
2247 2560 5.741388 CAAGTTGACTTGTAAGAGCAGTT 57.259 39.130 14.23 0.00 46.11 3.16
2347 2660 8.616076 CCTGTTTGATATTTTGACTAGACCATC 58.384 37.037 0.00 0.00 0.00 3.51
2351 2664 7.119846 ACAGCCTGTTTGATATTTTGACTAGAC 59.880 37.037 0.00 0.00 0.00 2.59
2358 2672 5.782047 TGGAACAGCCTGTTTGATATTTTG 58.218 37.500 12.09 0.00 41.28 2.44
2393 2707 2.504244 CACTTCTCCGCGACCGAC 60.504 66.667 8.23 0.00 36.29 4.79
2461 2775 1.131126 CACAGACGGTGCAATTCCATC 59.869 52.381 0.00 0.00 41.36 3.51
2612 2926 2.839486 TCTTGTGCTCTGTACCAAGG 57.161 50.000 7.24 0.00 0.00 3.61
2627 2941 7.895759 TCCATTTTATTGAGGAGGTTTTCTTG 58.104 34.615 0.00 0.00 0.00 3.02
2711 3025 0.183492 TCTGCTGGTGTCTTTTGCCT 59.817 50.000 0.00 0.00 0.00 4.75
2801 3115 1.230324 GTGGCTTCTCTGAACGCTTT 58.770 50.000 0.00 0.00 0.00 3.51
2826 3140 1.474077 GCAAATGCTACAACTCCAGGG 59.526 52.381 0.00 0.00 38.21 4.45
2834 3148 5.593909 ACATATAGCTTGGCAAATGCTACAA 59.406 36.000 19.60 13.03 41.29 2.41
2870 3184 0.108585 TCAGGTGGCTGTTCAAGTCC 59.891 55.000 0.00 0.00 0.00 3.85
2906 3220 0.040067 GCAAGGACTGAACCTTTGCG 60.040 55.000 0.00 0.00 46.61 4.85
8272 11176 6.416750 GCCATATGTTTAACATAACGCCTTTC 59.583 38.462 19.78 3.00 43.50 2.62
8273 11177 6.127591 TGCCATATGTTTAACATAACGCCTTT 60.128 34.615 24.15 7.81 43.50 3.11
8274 11178 5.358442 TGCCATATGTTTAACATAACGCCTT 59.642 36.000 24.15 8.35 43.50 4.35
8275 11179 4.884744 TGCCATATGTTTAACATAACGCCT 59.115 37.500 24.15 8.89 43.50 5.52
8276 11180 5.176407 TGCCATATGTTTAACATAACGCC 57.824 39.130 24.15 14.34 43.50 5.68
8277 11181 5.816919 ACTGCCATATGTTTAACATAACGC 58.183 37.500 19.78 21.18 43.50 4.84
8278 11182 8.138365 AGTACTGCCATATGTTTAACATAACG 57.862 34.615 19.78 14.06 43.50 3.18
8282 11186 9.456147 TTTGTAGTACTGCCATATGTTTAACAT 57.544 29.630 15.22 15.22 42.35 2.71
8283 11187 8.850007 TTTGTAGTACTGCCATATGTTTAACA 57.150 30.769 5.39 0.00 0.00 2.41
8289 11193 9.456147 TGTTTTATTTGTAGTACTGCCATATGT 57.544 29.630 5.39 0.00 0.00 2.29
8290 11194 9.716507 GTGTTTTATTTGTAGTACTGCCATATG 57.283 33.333 5.39 0.00 0.00 1.78
8291 11195 9.456147 TGTGTTTTATTTGTAGTACTGCCATAT 57.544 29.630 5.39 5.73 0.00 1.78
8292 11196 8.850007 TGTGTTTTATTTGTAGTACTGCCATA 57.150 30.769 5.39 0.90 0.00 2.74
8293 11197 7.753309 TGTGTTTTATTTGTAGTACTGCCAT 57.247 32.000 5.39 1.89 0.00 4.40
8294 11198 7.569639 TTGTGTTTTATTTGTAGTACTGCCA 57.430 32.000 5.39 0.00 0.00 4.92
8295 11199 8.748582 GTTTTGTGTTTTATTTGTAGTACTGCC 58.251 33.333 5.39 0.00 0.00 4.85
8296 11200 9.291664 TGTTTTGTGTTTTATTTGTAGTACTGC 57.708 29.630 5.39 4.49 0.00 4.40
8305 11209 9.790433 CCGATTACATGTTTTGTGTTTTATTTG 57.210 29.630 2.30 0.00 39.48 2.32
8306 11210 9.751542 TCCGATTACATGTTTTGTGTTTTATTT 57.248 25.926 2.30 0.00 39.48 1.40
8307 11211 9.921637 ATCCGATTACATGTTTTGTGTTTTATT 57.078 25.926 2.30 0.00 39.48 1.40
8308 11212 9.352784 CATCCGATTACATGTTTTGTGTTTTAT 57.647 29.630 2.30 0.00 39.48 1.40
8309 11213 8.568794 TCATCCGATTACATGTTTTGTGTTTTA 58.431 29.630 2.30 0.00 39.48 1.52
8310 11214 7.381139 GTCATCCGATTACATGTTTTGTGTTTT 59.619 33.333 2.30 0.00 39.48 2.43
8311 11215 6.861055 GTCATCCGATTACATGTTTTGTGTTT 59.139 34.615 2.30 0.00 39.48 2.83
8312 11216 6.378582 GTCATCCGATTACATGTTTTGTGTT 58.621 36.000 2.30 0.00 39.48 3.32
8313 11217 5.106317 GGTCATCCGATTACATGTTTTGTGT 60.106 40.000 2.30 0.00 39.48 3.72
8314 11218 5.331902 GGTCATCCGATTACATGTTTTGTG 58.668 41.667 2.30 0.00 39.48 3.33
8315 11219 5.560966 GGTCATCCGATTACATGTTTTGT 57.439 39.130 2.30 0.00 42.62 2.83
8330 11234 0.798776 CAAGTTCAGCACGGTCATCC 59.201 55.000 0.00 0.00 0.00 3.51
8331 11235 0.166814 GCAAGTTCAGCACGGTCATC 59.833 55.000 0.00 0.00 0.00 2.92
8332 11236 0.534877 TGCAAGTTCAGCACGGTCAT 60.535 50.000 0.00 0.00 37.02 3.06
8333 11237 0.746204 TTGCAAGTTCAGCACGGTCA 60.746 50.000 0.00 0.00 42.54 4.02
8334 11238 0.380378 TTTGCAAGTTCAGCACGGTC 59.620 50.000 0.00 0.00 42.54 4.79
8335 11239 0.381801 CTTTGCAAGTTCAGCACGGT 59.618 50.000 0.00 0.00 42.54 4.83
8336 11240 0.381801 ACTTTGCAAGTTCAGCACGG 59.618 50.000 0.00 0.00 42.54 4.94
8337 11241 2.287915 ACTACTTTGCAAGTTCAGCACG 59.712 45.455 0.00 0.00 42.54 5.34
8338 11242 3.971032 ACTACTTTGCAAGTTCAGCAC 57.029 42.857 0.00 0.00 42.54 4.40
8344 11248 6.942576 AGGTATGATGAACTACTTTGCAAGTT 59.057 34.615 0.00 0.00 42.81 2.66
8345 11249 6.372659 CAGGTATGATGAACTACTTTGCAAGT 59.627 38.462 0.00 3.02 45.40 3.16
8346 11250 6.595326 TCAGGTATGATGAACTACTTTGCAAG 59.405 38.462 0.00 0.00 0.00 4.01
8347 11251 6.371548 GTCAGGTATGATGAACTACTTTGCAA 59.628 38.462 0.00 0.00 37.87 4.08
8348 11252 5.874810 GTCAGGTATGATGAACTACTTTGCA 59.125 40.000 0.00 0.00 37.87 4.08
8349 11253 5.005779 CGTCAGGTATGATGAACTACTTTGC 59.994 44.000 0.00 0.00 43.98 3.68
8350 11254 5.005779 GCGTCAGGTATGATGAACTACTTTG 59.994 44.000 1.71 0.00 43.98 2.77
8351 11255 5.109903 GCGTCAGGTATGATGAACTACTTT 58.890 41.667 1.71 0.00 43.98 2.66
8352 11256 4.683832 GCGTCAGGTATGATGAACTACTT 58.316 43.478 1.71 0.00 43.98 2.24
8353 11257 3.243101 CGCGTCAGGTATGATGAACTACT 60.243 47.826 0.00 0.00 43.98 2.57
8354 11258 3.043586 CGCGTCAGGTATGATGAACTAC 58.956 50.000 0.00 0.00 43.98 2.73
8355 11259 2.686405 ACGCGTCAGGTATGATGAACTA 59.314 45.455 5.58 0.00 43.98 2.24
8356 11260 1.476891 ACGCGTCAGGTATGATGAACT 59.523 47.619 5.58 0.00 43.98 3.01
8357 11261 1.852895 GACGCGTCAGGTATGATGAAC 59.147 52.381 33.09 1.28 43.98 3.18
8358 11262 1.474879 TGACGCGTCAGGTATGATGAA 59.525 47.619 36.40 10.69 43.98 2.57
8359 11263 1.099689 TGACGCGTCAGGTATGATGA 58.900 50.000 36.40 11.25 43.98 2.92
8360 11264 1.921243 TTGACGCGTCAGGTATGATG 58.079 50.000 37.06 0.00 44.06 3.07
8361 11265 2.165641 TCTTTGACGCGTCAGGTATGAT 59.834 45.455 37.06 0.00 41.13 2.45
8362 11266 1.542472 TCTTTGACGCGTCAGGTATGA 59.458 47.619 37.06 26.81 41.13 2.15
8363 11267 1.990799 TCTTTGACGCGTCAGGTATG 58.009 50.000 37.06 25.23 41.13 2.39
8364 11268 2.094182 ACATCTTTGACGCGTCAGGTAT 60.094 45.455 37.06 27.53 41.13 2.73
8371 11275 1.006571 ACCGACATCTTTGACGCGT 60.007 52.632 13.85 13.85 39.23 6.01
8376 11280 1.606994 CGTTCCCACCGACATCTTTGA 60.607 52.381 0.00 0.00 0.00 2.69
8412 11316 1.492764 GACCGTAGAAGGGATCCCAA 58.507 55.000 32.69 12.12 38.92 4.12
8460 11364 2.108168 TCCGTGTGCTAGCTCCTAAAT 58.892 47.619 17.23 0.00 0.00 1.40
8512 11416 6.156429 CCACTAAAACAGGACTAGGGTCTTAT 59.844 42.308 0.00 0.00 41.82 1.73
8529 11433 8.918202 AAGAACACTCAATACATCCACTAAAA 57.082 30.769 0.00 0.00 0.00 1.52
8533 11437 6.595716 GCTTAAGAACACTCAATACATCCACT 59.404 38.462 6.67 0.00 0.00 4.00
8555 11459 4.213482 CACCGTAGCTAGTTCAAAAAGCTT 59.787 41.667 0.90 0.00 43.97 3.74
8589 11493 4.293368 AGGAGAGGGATTCAGATTTTTGGT 59.707 41.667 0.00 0.00 0.00 3.67
8597 11501 1.686428 CGACCAGGAGAGGGATTCAGA 60.686 57.143 0.00 0.00 0.00 3.27
8599 11504 0.041238 ACGACCAGGAGAGGGATTCA 59.959 55.000 0.00 0.00 0.00 2.57
8648 11553 0.681733 CCTCCTGTGTGCTACTGTGT 59.318 55.000 0.00 0.00 0.00 3.72
8655 11563 0.109342 CTTTCCACCTCCTGTGTGCT 59.891 55.000 0.00 0.00 43.85 4.40
8689 11597 3.362986 CATGTAATGTCGTGCGATAAGCC 60.363 47.826 0.00 0.00 42.17 4.35
8756 11665 2.490685 GCCTCGTTCTCGTCCCTC 59.509 66.667 0.00 0.00 38.33 4.30
8903 11812 2.825075 ATCAGCAAGCACCCGCATGA 62.825 55.000 0.00 0.00 39.19 3.07
8963 11872 1.682005 GCTGCCAGCCCAACCAATA 60.682 57.895 5.06 0.00 34.48 1.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.