Multiple sequence alignment - TraesCS5A01G222900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G222900 chr5A 100.000 1718 0 0 1 1718 438917332 438919049 0.000000e+00 3173
1 TraesCS5A01G222900 chr5A 100.000 1456 0 0 2042 3497 438919373 438920828 0.000000e+00 2689
2 TraesCS5A01G222900 chr5A 93.137 102 5 2 147 247 211613226 211613326 7.820000e-32 148
3 TraesCS5A01G222900 chr5D 95.498 733 24 3 366 1090 337697901 337698632 0.000000e+00 1162
4 TraesCS5A01G222900 chr5D 88.689 946 56 17 2584 3494 337700011 337700940 0.000000e+00 1107
5 TraesCS5A01G222900 chr5D 95.438 548 19 3 2042 2583 337699418 337699965 0.000000e+00 869
6 TraesCS5A01G222900 chr5D 95.216 439 16 2 1282 1718 337698929 337699364 0.000000e+00 689
7 TraesCS5A01G222900 chr5B 93.232 724 34 8 425 1141 396621183 396621898 0.000000e+00 1051
8 TraesCS5A01G222900 chr5B 95.872 533 17 4 2042 2569 396622620 396623152 0.000000e+00 857
9 TraesCS5A01G222900 chr5B 94.524 420 20 1 1299 1718 396622150 396622566 0.000000e+00 645
10 TraesCS5A01G222900 chr5B 89.279 513 22 6 2808 3315 396623305 396623789 2.310000e-171 612
11 TraesCS5A01G222900 chr5B 91.954 174 12 1 3258 3429 396623784 396623957 3.490000e-60 243
12 TraesCS5A01G222900 chr5B 90.441 136 3 4 2654 2779 396623176 396623311 1.670000e-38 171
13 TraesCS5A01G222900 chr5B 95.098 102 5 0 146 247 659822278 659822379 1.000000e-35 161
14 TraesCS5A01G222900 chr5B 91.743 109 7 2 150 258 704989368 704989262 2.170000e-32 150
15 TraesCS5A01G222900 chr5B 96.341 82 3 0 3416 3497 396623985 396624066 6.090000e-28 135
16 TraesCS5A01G222900 chr6D 94.059 101 6 0 148 248 309588508 309588608 1.680000e-33 154
17 TraesCS5A01G222900 chr7B 77.622 286 41 19 677 948 715996631 715996907 6.050000e-33 152
18 TraesCS5A01G222900 chr7A 94.845 97 5 0 150 246 68887671 68887575 6.050000e-33 152
19 TraesCS5A01G222900 chr7A 90.826 109 9 1 144 252 663553539 663553646 1.010000e-30 145
20 TraesCS5A01G222900 chr3B 92.523 107 7 1 150 256 99666552 99666447 6.050000e-33 152
21 TraesCS5A01G222900 chr6B 91.589 107 8 1 143 249 38619699 38619594 2.810000e-31 147
22 TraesCS5A01G222900 chr3A 91.589 107 8 1 150 256 638744409 638744304 2.810000e-31 147


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G222900 chr5A 438917332 438920828 3496 False 2931.000000 3173 100.000000 1 3497 2 chr5A.!!$F2 3496
1 TraesCS5A01G222900 chr5D 337697901 337700940 3039 False 956.750000 1162 93.710250 366 3494 4 chr5D.!!$F1 3128
2 TraesCS5A01G222900 chr5B 396621183 396624066 2883 False 530.571429 1051 93.091857 425 3497 7 chr5B.!!$F2 3072

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
71 72 0.035439 CCGGGATTTGTAGCACACCT 60.035 55.0 0.0 0.0 0.0 4.00 F
571 573 0.036875 CCCCTCACCAAACTCACCTC 59.963 60.0 0.0 0.0 0.0 3.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1047 1056 0.034767 CCTGAAGCATGAGCAAGGGA 60.035 55.0 0.00 0.00 45.49 4.20 R
2507 2705 0.028902 TGGACGTAGCACGATCATCG 59.971 55.0 5.22 5.22 46.05 3.84 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 5.924475 ACGGTTGTGATCTACTTCAAAAG 57.076 39.130 0.00 0.00 0.00 2.27
25 26 5.607477 ACGGTTGTGATCTACTTCAAAAGA 58.393 37.500 0.00 0.00 0.00 2.52
26 27 5.696724 ACGGTTGTGATCTACTTCAAAAGAG 59.303 40.000 0.00 0.00 0.00 2.85
27 28 5.120830 CGGTTGTGATCTACTTCAAAAGAGG 59.879 44.000 0.00 0.00 0.00 3.69
28 29 5.106515 GGTTGTGATCTACTTCAAAAGAGGC 60.107 44.000 0.00 0.00 0.00 4.70
29 30 4.579869 TGTGATCTACTTCAAAAGAGGCC 58.420 43.478 0.00 0.00 0.00 5.19
30 31 4.287067 TGTGATCTACTTCAAAAGAGGCCT 59.713 41.667 3.86 3.86 0.00 5.19
31 32 5.483937 TGTGATCTACTTCAAAAGAGGCCTA 59.516 40.000 4.42 0.00 0.00 3.93
32 33 5.813157 GTGATCTACTTCAAAAGAGGCCTAC 59.187 44.000 4.42 0.00 0.00 3.18
33 34 5.721960 TGATCTACTTCAAAAGAGGCCTACT 59.278 40.000 4.42 1.25 0.00 2.57
34 35 6.895756 TGATCTACTTCAAAAGAGGCCTACTA 59.104 38.462 4.42 0.00 0.00 1.82
35 36 6.777213 TCTACTTCAAAAGAGGCCTACTAG 57.223 41.667 4.42 1.47 0.00 2.57
36 37 6.491383 TCTACTTCAAAAGAGGCCTACTAGA 58.509 40.000 4.42 0.00 0.00 2.43
37 38 6.952358 TCTACTTCAAAAGAGGCCTACTAGAA 59.048 38.462 4.42 6.10 0.00 2.10
38 39 6.628644 ACTTCAAAAGAGGCCTACTAGAAT 57.371 37.500 4.42 0.00 0.00 2.40
39 40 6.410540 ACTTCAAAAGAGGCCTACTAGAATG 58.589 40.000 4.42 0.00 0.00 2.67
40 41 6.013293 ACTTCAAAAGAGGCCTACTAGAATGT 60.013 38.462 4.42 4.80 0.00 2.71
41 42 6.374417 TCAAAAGAGGCCTACTAGAATGTT 57.626 37.500 4.42 0.00 0.00 2.71
42 43 6.779860 TCAAAAGAGGCCTACTAGAATGTTT 58.220 36.000 4.42 0.00 0.00 2.83
43 44 7.231467 TCAAAAGAGGCCTACTAGAATGTTTT 58.769 34.615 4.42 0.00 0.00 2.43
44 45 7.174946 TCAAAAGAGGCCTACTAGAATGTTTTG 59.825 37.037 4.42 9.23 34.16 2.44
45 46 5.763876 AGAGGCCTACTAGAATGTTTTGT 57.236 39.130 4.42 0.00 0.00 2.83
46 47 6.128138 AGAGGCCTACTAGAATGTTTTGTT 57.872 37.500 4.42 0.00 0.00 2.83
47 48 6.543735 AGAGGCCTACTAGAATGTTTTGTTT 58.456 36.000 4.42 0.00 0.00 2.83
48 49 6.655425 AGAGGCCTACTAGAATGTTTTGTTTC 59.345 38.462 4.42 0.00 0.00 2.78
49 50 6.543735 AGGCCTACTAGAATGTTTTGTTTCT 58.456 36.000 1.29 0.00 36.26 2.52
50 51 7.004691 AGGCCTACTAGAATGTTTTGTTTCTT 58.995 34.615 1.29 0.00 34.22 2.52
51 52 7.040409 AGGCCTACTAGAATGTTTTGTTTCTTG 60.040 37.037 1.29 0.00 34.22 3.02
52 53 6.582672 GCCTACTAGAATGTTTTGTTTCTTGC 59.417 38.462 0.00 0.00 34.22 4.01
53 54 7.084486 CCTACTAGAATGTTTTGTTTCTTGCC 58.916 38.462 0.00 0.00 34.22 4.52
54 55 5.519722 ACTAGAATGTTTTGTTTCTTGCCG 58.480 37.500 0.00 0.00 34.22 5.69
55 56 3.716601 AGAATGTTTTGTTTCTTGCCGG 58.283 40.909 0.00 0.00 0.00 6.13
56 57 2.524569 ATGTTTTGTTTCTTGCCGGG 57.475 45.000 2.18 0.00 0.00 5.73
57 58 1.475403 TGTTTTGTTTCTTGCCGGGA 58.525 45.000 2.18 0.00 0.00 5.14
58 59 2.035632 TGTTTTGTTTCTTGCCGGGAT 58.964 42.857 2.18 0.00 0.00 3.85
59 60 2.432510 TGTTTTGTTTCTTGCCGGGATT 59.567 40.909 2.18 0.00 0.00 3.01
60 61 3.118592 TGTTTTGTTTCTTGCCGGGATTT 60.119 39.130 2.18 0.00 0.00 2.17
61 62 2.810439 TTGTTTCTTGCCGGGATTTG 57.190 45.000 2.18 0.00 0.00 2.32
62 63 1.698506 TGTTTCTTGCCGGGATTTGT 58.301 45.000 2.18 0.00 0.00 2.83
63 64 2.865079 TGTTTCTTGCCGGGATTTGTA 58.135 42.857 2.18 0.00 0.00 2.41
64 65 2.817258 TGTTTCTTGCCGGGATTTGTAG 59.183 45.455 2.18 0.00 0.00 2.74
65 66 1.459450 TTCTTGCCGGGATTTGTAGC 58.541 50.000 2.18 0.00 0.00 3.58
66 67 0.326595 TCTTGCCGGGATTTGTAGCA 59.673 50.000 2.18 0.00 0.00 3.49
67 68 0.451783 CTTGCCGGGATTTGTAGCAC 59.548 55.000 2.18 0.00 32.18 4.40
68 69 0.250945 TTGCCGGGATTTGTAGCACA 60.251 50.000 2.18 0.00 32.18 4.57
69 70 0.958382 TGCCGGGATTTGTAGCACAC 60.958 55.000 2.18 0.00 0.00 3.82
70 71 1.654023 GCCGGGATTTGTAGCACACC 61.654 60.000 2.18 0.00 0.00 4.16
71 72 0.035439 CCGGGATTTGTAGCACACCT 60.035 55.000 0.00 0.00 0.00 4.00
72 73 1.369625 CGGGATTTGTAGCACACCTC 58.630 55.000 0.00 0.00 0.00 3.85
73 74 1.066143 CGGGATTTGTAGCACACCTCT 60.066 52.381 0.00 0.00 0.00 3.69
74 75 2.615493 CGGGATTTGTAGCACACCTCTT 60.615 50.000 0.00 0.00 0.00 2.85
75 76 3.421844 GGGATTTGTAGCACACCTCTTT 58.578 45.455 0.00 0.00 0.00 2.52
76 77 4.585879 GGGATTTGTAGCACACCTCTTTA 58.414 43.478 0.00 0.00 0.00 1.85
77 78 5.007682 GGGATTTGTAGCACACCTCTTTAA 58.992 41.667 0.00 0.00 0.00 1.52
78 79 5.652452 GGGATTTGTAGCACACCTCTTTAAT 59.348 40.000 0.00 0.00 0.00 1.40
79 80 6.152831 GGGATTTGTAGCACACCTCTTTAATT 59.847 38.462 0.00 0.00 0.00 1.40
80 81 7.309805 GGGATTTGTAGCACACCTCTTTAATTT 60.310 37.037 0.00 0.00 0.00 1.82
81 82 8.088365 GGATTTGTAGCACACCTCTTTAATTTT 58.912 33.333 0.00 0.00 0.00 1.82
82 83 9.476202 GATTTGTAGCACACCTCTTTAATTTTT 57.524 29.630 0.00 0.00 0.00 1.94
112 113 9.601810 TCATATACACCCTCTATTCACTAATGT 57.398 33.333 0.00 0.00 0.00 2.71
116 117 7.973048 ACACCCTCTATTCACTAATGTAGAA 57.027 36.000 0.00 0.00 0.00 2.10
117 118 8.375493 ACACCCTCTATTCACTAATGTAGAAA 57.625 34.615 0.00 0.00 0.00 2.52
118 119 8.822805 ACACCCTCTATTCACTAATGTAGAAAA 58.177 33.333 0.00 0.00 0.00 2.29
119 120 9.319143 CACCCTCTATTCACTAATGTAGAAAAG 57.681 37.037 0.00 0.00 0.00 2.27
120 121 9.047947 ACCCTCTATTCACTAATGTAGAAAAGT 57.952 33.333 0.00 0.00 0.00 2.66
121 122 9.319143 CCCTCTATTCACTAATGTAGAAAAGTG 57.681 37.037 0.00 0.00 40.54 3.16
122 123 8.821894 CCTCTATTCACTAATGTAGAAAAGTGC 58.178 37.037 0.00 0.00 39.33 4.40
123 124 8.718102 TCTATTCACTAATGTAGAAAAGTGCC 57.282 34.615 0.00 0.00 39.33 5.01
124 125 8.318412 TCTATTCACTAATGTAGAAAAGTGCCA 58.682 33.333 0.00 0.00 39.33 4.92
125 126 7.759489 ATTCACTAATGTAGAAAAGTGCCAA 57.241 32.000 0.00 0.00 39.33 4.52
126 127 7.575414 TTCACTAATGTAGAAAAGTGCCAAA 57.425 32.000 0.00 0.00 39.33 3.28
127 128 7.575414 TCACTAATGTAGAAAAGTGCCAAAA 57.425 32.000 0.00 0.00 39.33 2.44
128 129 8.177119 TCACTAATGTAGAAAAGTGCCAAAAT 57.823 30.769 0.00 0.00 39.33 1.82
129 130 8.081633 TCACTAATGTAGAAAAGTGCCAAAATG 58.918 33.333 0.00 0.00 39.33 2.32
130 131 7.867403 CACTAATGTAGAAAAGTGCCAAAATGT 59.133 33.333 0.00 0.00 33.59 2.71
131 132 8.082242 ACTAATGTAGAAAAGTGCCAAAATGTC 58.918 33.333 0.00 0.00 0.00 3.06
132 133 6.655078 ATGTAGAAAAGTGCCAAAATGTCT 57.345 33.333 0.00 0.00 0.00 3.41
133 134 7.759489 ATGTAGAAAAGTGCCAAAATGTCTA 57.241 32.000 0.00 0.00 0.00 2.59
134 135 6.966021 TGTAGAAAAGTGCCAAAATGTCTAC 58.034 36.000 0.00 0.00 37.69 2.59
135 136 6.544197 TGTAGAAAAGTGCCAAAATGTCTACA 59.456 34.615 6.19 6.19 42.22 2.74
136 137 6.655078 AGAAAAGTGCCAAAATGTCTACAT 57.345 33.333 0.00 0.00 38.41 2.29
138 139 8.177119 AGAAAAGTGCCAAAATGTCTACATTA 57.823 30.769 8.67 0.00 45.06 1.90
139 140 8.299570 AGAAAAGTGCCAAAATGTCTACATTAG 58.700 33.333 8.67 5.29 45.06 1.73
140 141 7.524717 AAAGTGCCAAAATGTCTACATTAGT 57.475 32.000 8.67 0.00 45.06 2.24
141 142 6.500684 AGTGCCAAAATGTCTACATTAGTG 57.499 37.500 8.67 9.70 45.06 2.74
142 143 6.237901 AGTGCCAAAATGTCTACATTAGTGA 58.762 36.000 8.67 0.00 45.06 3.41
143 144 6.372659 AGTGCCAAAATGTCTACATTAGTGAG 59.627 38.462 8.67 6.30 45.06 3.51
144 145 5.123820 TGCCAAAATGTCTACATTAGTGAGC 59.876 40.000 8.67 13.56 45.06 4.26
145 146 5.123820 GCCAAAATGTCTACATTAGTGAGCA 59.876 40.000 8.67 0.00 45.06 4.26
146 147 6.349280 GCCAAAATGTCTACATTAGTGAGCAA 60.349 38.462 8.67 0.00 45.06 3.91
147 148 7.592938 CCAAAATGTCTACATTAGTGAGCAAA 58.407 34.615 8.67 0.00 45.06 3.68
148 149 7.752239 CCAAAATGTCTACATTAGTGAGCAAAG 59.248 37.037 8.67 0.00 45.06 2.77
149 150 7.986085 AAATGTCTACATTAGTGAGCAAAGT 57.014 32.000 8.67 0.00 45.06 2.66
150 151 9.502091 AAAATGTCTACATTAGTGAGCAAAGTA 57.498 29.630 8.67 0.00 45.06 2.24
151 152 8.480643 AATGTCTACATTAGTGAGCAAAGTAC 57.519 34.615 6.55 0.00 44.09 2.73
152 153 7.228314 TGTCTACATTAGTGAGCAAAGTACT 57.772 36.000 0.00 0.00 0.00 2.73
153 154 7.313646 TGTCTACATTAGTGAGCAAAGTACTC 58.686 38.462 0.00 0.00 34.62 2.59
154 155 6.752815 GTCTACATTAGTGAGCAAAGTACTCC 59.247 42.308 0.00 0.00 32.98 3.85
155 156 4.833390 ACATTAGTGAGCAAAGTACTCCC 58.167 43.478 0.00 0.00 32.98 4.30
156 157 4.532521 ACATTAGTGAGCAAAGTACTCCCT 59.467 41.667 0.00 0.00 32.98 4.20
157 158 4.803098 TTAGTGAGCAAAGTACTCCCTC 57.197 45.455 0.00 3.26 32.98 4.30
158 159 1.903183 AGTGAGCAAAGTACTCCCTCC 59.097 52.381 0.00 0.00 32.98 4.30
159 160 0.895530 TGAGCAAAGTACTCCCTCCG 59.104 55.000 0.00 0.00 32.98 4.63
160 161 0.896226 GAGCAAAGTACTCCCTCCGT 59.104 55.000 0.00 0.00 0.00 4.69
161 162 1.275573 GAGCAAAGTACTCCCTCCGTT 59.724 52.381 0.00 0.00 0.00 4.44
162 163 1.275573 AGCAAAGTACTCCCTCCGTTC 59.724 52.381 0.00 0.00 0.00 3.95
163 164 1.275573 GCAAAGTACTCCCTCCGTTCT 59.724 52.381 0.00 0.00 0.00 3.01
164 165 2.494870 GCAAAGTACTCCCTCCGTTCTA 59.505 50.000 0.00 0.00 0.00 2.10
165 166 3.056322 GCAAAGTACTCCCTCCGTTCTAA 60.056 47.826 0.00 0.00 0.00 2.10
166 167 4.562143 GCAAAGTACTCCCTCCGTTCTAAA 60.562 45.833 0.00 0.00 0.00 1.85
167 168 5.544650 CAAAGTACTCCCTCCGTTCTAAAA 58.455 41.667 0.00 0.00 0.00 1.52
168 169 6.171213 CAAAGTACTCCCTCCGTTCTAAAAT 58.829 40.000 0.00 0.00 0.00 1.82
169 170 7.325694 CAAAGTACTCCCTCCGTTCTAAAATA 58.674 38.462 0.00 0.00 0.00 1.40
170 171 6.712179 AGTACTCCCTCCGTTCTAAAATAG 57.288 41.667 0.00 0.00 0.00 1.73
171 172 6.430007 AGTACTCCCTCCGTTCTAAAATAGA 58.570 40.000 0.00 0.00 0.00 1.98
172 173 7.068061 AGTACTCCCTCCGTTCTAAAATAGAT 58.932 38.462 0.00 0.00 34.22 1.98
173 174 6.163135 ACTCCCTCCGTTCTAAAATAGATG 57.837 41.667 0.00 0.00 34.22 2.90
174 175 5.897824 ACTCCCTCCGTTCTAAAATAGATGA 59.102 40.000 0.00 0.00 34.22 2.92
175 176 6.158023 TCCCTCCGTTCTAAAATAGATGAC 57.842 41.667 0.00 0.00 34.22 3.06
176 177 5.897824 TCCCTCCGTTCTAAAATAGATGACT 59.102 40.000 0.00 0.00 34.22 3.41
177 178 6.383147 TCCCTCCGTTCTAAAATAGATGACTT 59.617 38.462 0.00 0.00 34.22 3.01
178 179 7.562454 TCCCTCCGTTCTAAAATAGATGACTTA 59.438 37.037 0.00 0.00 34.22 2.24
179 180 8.202137 CCCTCCGTTCTAAAATAGATGACTTAA 58.798 37.037 0.00 0.00 34.22 1.85
180 181 9.032420 CCTCCGTTCTAAAATAGATGACTTAAC 57.968 37.037 0.00 0.00 34.22 2.01
181 182 9.804758 CTCCGTTCTAAAATAGATGACTTAACT 57.195 33.333 0.00 0.00 34.22 2.24
236 237 6.683974 ATTTGGGTCATCTATTTCAGAACG 57.316 37.500 0.00 0.00 36.67 3.95
237 238 4.137116 TGGGTCATCTATTTCAGAACGG 57.863 45.455 0.00 0.00 36.67 4.44
238 239 3.772572 TGGGTCATCTATTTCAGAACGGA 59.227 43.478 0.00 0.00 36.67 4.69
239 240 4.141937 TGGGTCATCTATTTCAGAACGGAG 60.142 45.833 0.00 0.00 36.67 4.63
240 241 4.372656 GGTCATCTATTTCAGAACGGAGG 58.627 47.826 0.00 0.00 36.67 4.30
241 242 4.372656 GTCATCTATTTCAGAACGGAGGG 58.627 47.826 0.00 0.00 36.67 4.30
242 243 4.099573 GTCATCTATTTCAGAACGGAGGGA 59.900 45.833 0.00 0.00 36.67 4.20
243 244 4.342378 TCATCTATTTCAGAACGGAGGGAG 59.658 45.833 0.00 0.00 36.67 4.30
244 245 3.709587 TCTATTTCAGAACGGAGGGAGT 58.290 45.455 0.00 0.00 0.00 3.85
245 246 4.863548 TCTATTTCAGAACGGAGGGAGTA 58.136 43.478 0.00 0.00 0.00 2.59
246 247 4.888239 TCTATTTCAGAACGGAGGGAGTAG 59.112 45.833 0.00 0.00 0.00 2.57
247 248 2.599408 TTCAGAACGGAGGGAGTAGT 57.401 50.000 0.00 0.00 0.00 2.73
248 249 3.726557 TTCAGAACGGAGGGAGTAGTA 57.273 47.619 0.00 0.00 0.00 1.82
249 250 3.947612 TCAGAACGGAGGGAGTAGTAT 57.052 47.619 0.00 0.00 0.00 2.12
250 251 4.246712 TCAGAACGGAGGGAGTAGTATT 57.753 45.455 0.00 0.00 0.00 1.89
251 252 4.607239 TCAGAACGGAGGGAGTAGTATTT 58.393 43.478 0.00 0.00 0.00 1.40
252 253 5.021458 TCAGAACGGAGGGAGTAGTATTTT 58.979 41.667 0.00 0.00 0.00 1.82
253 254 5.482878 TCAGAACGGAGGGAGTAGTATTTTT 59.517 40.000 0.00 0.00 0.00 1.94
254 255 6.664816 TCAGAACGGAGGGAGTAGTATTTTTA 59.335 38.462 0.00 0.00 0.00 1.52
255 256 6.979238 CAGAACGGAGGGAGTAGTATTTTTAG 59.021 42.308 0.00 0.00 0.00 1.85
256 257 5.273674 ACGGAGGGAGTAGTATTTTTAGC 57.726 43.478 0.00 0.00 0.00 3.09
257 258 4.713321 ACGGAGGGAGTAGTATTTTTAGCA 59.287 41.667 0.00 0.00 0.00 3.49
258 259 5.048507 CGGAGGGAGTAGTATTTTTAGCAC 58.951 45.833 0.00 0.00 0.00 4.40
259 260 5.163437 CGGAGGGAGTAGTATTTTTAGCACT 60.163 44.000 0.00 0.00 0.00 4.40
260 261 6.040166 CGGAGGGAGTAGTATTTTTAGCACTA 59.960 42.308 0.00 0.00 0.00 2.74
261 262 7.255871 CGGAGGGAGTAGTATTTTTAGCACTAT 60.256 40.741 0.00 0.00 0.00 2.12
262 263 9.086758 GGAGGGAGTAGTATTTTTAGCACTATA 57.913 37.037 0.00 0.00 0.00 1.31
264 265 9.657728 AGGGAGTAGTATTTTTAGCACTATAGT 57.342 33.333 0.00 0.00 0.00 2.12
294 295 7.548196 GGATAGATAGACCGAGATAGAACTG 57.452 44.000 0.00 0.00 0.00 3.16
295 296 7.107542 GGATAGATAGACCGAGATAGAACTGT 58.892 42.308 0.00 0.00 0.00 3.55
296 297 7.279313 GGATAGATAGACCGAGATAGAACTGTC 59.721 44.444 0.00 0.00 0.00 3.51
297 298 5.310451 AGATAGACCGAGATAGAACTGTCC 58.690 45.833 0.00 0.00 0.00 4.02
298 299 2.657143 AGACCGAGATAGAACTGTCCC 58.343 52.381 0.00 0.00 0.00 4.46
299 300 2.242708 AGACCGAGATAGAACTGTCCCT 59.757 50.000 0.00 0.00 0.00 4.20
300 301 3.458857 AGACCGAGATAGAACTGTCCCTA 59.541 47.826 0.00 0.00 0.00 3.53
301 302 4.079901 AGACCGAGATAGAACTGTCCCTAA 60.080 45.833 0.00 0.00 0.00 2.69
302 303 4.607239 ACCGAGATAGAACTGTCCCTAAA 58.393 43.478 0.00 0.00 0.00 1.85
303 304 5.209659 ACCGAGATAGAACTGTCCCTAAAT 58.790 41.667 0.00 0.00 0.00 1.40
304 305 5.661759 ACCGAGATAGAACTGTCCCTAAATT 59.338 40.000 0.00 0.00 0.00 1.82
305 306 5.986135 CCGAGATAGAACTGTCCCTAAATTG 59.014 44.000 0.00 0.00 0.00 2.32
306 307 6.407074 CCGAGATAGAACTGTCCCTAAATTGT 60.407 42.308 0.00 0.00 0.00 2.71
307 308 6.477033 CGAGATAGAACTGTCCCTAAATTGTG 59.523 42.308 0.00 0.00 0.00 3.33
308 309 7.259088 AGATAGAACTGTCCCTAAATTGTGT 57.741 36.000 0.00 0.00 0.00 3.72
309 310 7.106239 AGATAGAACTGTCCCTAAATTGTGTG 58.894 38.462 0.00 0.00 0.00 3.82
310 311 5.304686 AGAACTGTCCCTAAATTGTGTGA 57.695 39.130 0.00 0.00 0.00 3.58
311 312 5.308825 AGAACTGTCCCTAAATTGTGTGAG 58.691 41.667 0.00 0.00 0.00 3.51
312 313 3.412386 ACTGTCCCTAAATTGTGTGAGC 58.588 45.455 0.00 0.00 0.00 4.26
313 314 3.073062 ACTGTCCCTAAATTGTGTGAGCT 59.927 43.478 0.00 0.00 0.00 4.09
314 315 4.286032 ACTGTCCCTAAATTGTGTGAGCTA 59.714 41.667 0.00 0.00 0.00 3.32
315 316 5.045578 ACTGTCCCTAAATTGTGTGAGCTAT 60.046 40.000 0.00 0.00 0.00 2.97
316 317 5.815581 TGTCCCTAAATTGTGTGAGCTATT 58.184 37.500 0.00 0.00 0.00 1.73
317 318 5.647658 TGTCCCTAAATTGTGTGAGCTATTG 59.352 40.000 0.00 0.00 0.00 1.90
318 319 5.648092 GTCCCTAAATTGTGTGAGCTATTGT 59.352 40.000 0.00 0.00 0.00 2.71
319 320 5.880332 TCCCTAAATTGTGTGAGCTATTGTC 59.120 40.000 0.00 0.00 0.00 3.18
320 321 5.647658 CCCTAAATTGTGTGAGCTATTGTCA 59.352 40.000 0.00 0.00 0.00 3.58
321 322 6.403636 CCCTAAATTGTGTGAGCTATTGTCAC 60.404 42.308 0.00 0.00 43.97 3.67
322 323 6.372659 CCTAAATTGTGTGAGCTATTGTCACT 59.627 38.462 4.86 0.00 44.02 3.41
323 324 5.869753 AATTGTGTGAGCTATTGTCACTC 57.130 39.130 4.86 2.22 44.02 3.51
324 325 2.946564 TGTGTGAGCTATTGTCACTCG 58.053 47.619 4.86 0.00 44.02 4.18
325 326 1.656095 GTGTGAGCTATTGTCACTCGC 59.344 52.381 4.86 0.00 44.02 5.03
326 327 1.272212 TGTGAGCTATTGTCACTCGCA 59.728 47.619 1.62 1.62 45.81 5.10
327 328 1.923204 GTGAGCTATTGTCACTCGCAG 59.077 52.381 0.00 0.00 41.05 5.18
328 329 0.926846 GAGCTATTGTCACTCGCAGC 59.073 55.000 0.00 0.00 0.00 5.25
329 330 0.534412 AGCTATTGTCACTCGCAGCT 59.466 50.000 0.00 0.00 34.63 4.24
330 331 0.926846 GCTATTGTCACTCGCAGCTC 59.073 55.000 0.00 0.00 0.00 4.09
331 332 1.470632 GCTATTGTCACTCGCAGCTCT 60.471 52.381 0.00 0.00 0.00 4.09
332 333 2.458951 CTATTGTCACTCGCAGCTCTC 58.541 52.381 0.00 0.00 0.00 3.20
333 334 0.457509 ATTGTCACTCGCAGCTCTCG 60.458 55.000 0.00 0.00 0.00 4.04
334 335 1.796190 TTGTCACTCGCAGCTCTCGT 61.796 55.000 5.01 0.00 0.00 4.18
335 336 0.953960 TGTCACTCGCAGCTCTCGTA 60.954 55.000 5.01 0.00 0.00 3.43
336 337 0.247894 GTCACTCGCAGCTCTCGTAG 60.248 60.000 5.01 4.53 0.00 3.51
337 338 0.391263 TCACTCGCAGCTCTCGTAGA 60.391 55.000 5.01 0.50 0.00 2.59
338 339 0.247894 CACTCGCAGCTCTCGTAGAC 60.248 60.000 5.01 0.00 0.00 2.59
339 340 0.673956 ACTCGCAGCTCTCGTAGACA 60.674 55.000 5.01 0.00 0.00 3.41
340 341 0.247894 CTCGCAGCTCTCGTAGACAC 60.248 60.000 5.01 0.00 0.00 3.67
341 342 0.953960 TCGCAGCTCTCGTAGACACA 60.954 55.000 5.01 0.00 0.00 3.72
342 343 0.109735 CGCAGCTCTCGTAGACACAA 60.110 55.000 0.00 0.00 0.00 3.33
343 344 1.666023 CGCAGCTCTCGTAGACACAAA 60.666 52.381 0.00 0.00 0.00 2.83
344 345 1.989165 GCAGCTCTCGTAGACACAAAG 59.011 52.381 0.00 0.00 0.00 2.77
345 346 1.989165 CAGCTCTCGTAGACACAAAGC 59.011 52.381 0.00 0.00 0.00 3.51
346 347 0.985549 GCTCTCGTAGACACAAAGCG 59.014 55.000 0.00 0.00 0.00 4.68
347 348 1.401148 GCTCTCGTAGACACAAAGCGA 60.401 52.381 0.00 0.00 0.00 4.93
348 349 2.921069 GCTCTCGTAGACACAAAGCGAA 60.921 50.000 0.00 0.00 0.00 4.70
349 350 2.657372 CTCTCGTAGACACAAAGCGAAC 59.343 50.000 0.00 0.00 0.00 3.95
350 351 1.719780 CTCGTAGACACAAAGCGAACC 59.280 52.381 0.00 0.00 0.00 3.62
351 352 0.788391 CGTAGACACAAAGCGAACCC 59.212 55.000 0.00 0.00 0.00 4.11
352 353 1.870580 CGTAGACACAAAGCGAACCCA 60.871 52.381 0.00 0.00 0.00 4.51
353 354 2.215196 GTAGACACAAAGCGAACCCAA 58.785 47.619 0.00 0.00 0.00 4.12
354 355 1.021968 AGACACAAAGCGAACCCAAC 58.978 50.000 0.00 0.00 0.00 3.77
355 356 0.736053 GACACAAAGCGAACCCAACA 59.264 50.000 0.00 0.00 0.00 3.33
356 357 0.454196 ACACAAAGCGAACCCAACAC 59.546 50.000 0.00 0.00 0.00 3.32
357 358 0.591236 CACAAAGCGAACCCAACACG 60.591 55.000 0.00 0.00 0.00 4.49
361 362 3.641986 GCGAACCCAACACGCGAA 61.642 61.111 15.93 0.00 42.65 4.70
362 363 2.961669 GCGAACCCAACACGCGAAT 61.962 57.895 15.93 0.00 42.65 3.34
363 364 1.154488 CGAACCCAACACGCGAATG 60.154 57.895 15.93 3.50 0.00 2.67
364 365 1.209127 GAACCCAACACGCGAATGG 59.791 57.895 15.93 17.45 0.00 3.16
367 368 1.743623 CCCAACACGCGAATGGCTA 60.744 57.895 15.93 0.00 40.44 3.93
395 396 8.506140 GCAATTGCAATATATAATGACGTGTT 57.494 30.769 25.36 0.00 41.59 3.32
396 397 8.967218 GCAATTGCAATATATAATGACGTGTTT 58.033 29.630 25.36 0.00 41.59 2.83
402 403 7.803189 GCAATATATAATGACGTGTTTTCCCAG 59.197 37.037 0.00 0.00 0.00 4.45
403 404 9.051679 CAATATATAATGACGTGTTTTCCCAGA 57.948 33.333 0.00 0.00 0.00 3.86
475 476 2.440501 CATGCGCCACGATTTTACTTC 58.559 47.619 4.18 0.00 0.00 3.01
520 522 4.521146 TGGATGATGAGAAGCTCCTTTTC 58.479 43.478 0.00 0.00 0.00 2.29
529 531 0.398318 AGCTCCTTTTCCGCAAGAGT 59.602 50.000 0.00 0.00 43.02 3.24
571 573 0.036875 CCCCTCACCAAACTCACCTC 59.963 60.000 0.00 0.00 0.00 3.85
1096 1124 7.968956 GCTGCATGGATCATCTTCTAATTAATG 59.031 37.037 0.00 0.00 0.00 1.90
1121 1149 0.670706 TTTTGCTTACGTGCATGGCA 59.329 45.000 11.36 7.56 42.96 4.92
1124 1152 1.965935 TGCTTACGTGCATGGCATAT 58.034 45.000 11.36 0.00 41.91 1.78
1128 1156 3.620761 CTTACGTGCATGGCATATTGTG 58.379 45.455 11.36 0.00 41.91 3.33
1134 1162 4.601019 GTGCATGGCATATTGTGTTAGTC 58.399 43.478 0.00 0.00 41.91 2.59
1141 1169 6.477253 TGGCATATTGTGTTAGTCCAACTAA 58.523 36.000 0.00 0.00 38.28 2.24
1142 1170 7.116075 TGGCATATTGTGTTAGTCCAACTAAT 58.884 34.615 3.11 0.00 42.06 1.73
1143 1171 7.282224 TGGCATATTGTGTTAGTCCAACTAATC 59.718 37.037 3.11 1.90 42.06 1.75
1144 1172 7.255139 GGCATATTGTGTTAGTCCAACTAATCC 60.255 40.741 3.11 0.00 42.06 3.01
1145 1173 7.499232 GCATATTGTGTTAGTCCAACTAATCCT 59.501 37.037 3.11 0.00 42.06 3.24
1157 1185 8.880244 AGTCCAACTAATCCTATATATGCAACA 58.120 33.333 0.00 0.00 0.00 3.33
1158 1186 9.672673 GTCCAACTAATCCTATATATGCAACAT 57.327 33.333 0.00 0.00 0.00 2.71
1159 1187 9.671279 TCCAACTAATCCTATATATGCAACATG 57.329 33.333 0.00 0.00 0.00 3.21
1160 1188 8.896744 CCAACTAATCCTATATATGCAACATGG 58.103 37.037 0.00 0.00 0.00 3.66
1161 1189 8.400947 CAACTAATCCTATATATGCAACATGGC 58.599 37.037 0.00 0.00 0.00 4.40
1162 1190 7.865820 ACTAATCCTATATATGCAACATGGCT 58.134 34.615 0.00 0.00 34.04 4.75
1163 1191 8.992349 ACTAATCCTATATATGCAACATGGCTA 58.008 33.333 0.00 0.00 34.04 3.93
1164 1192 9.836864 CTAATCCTATATATGCAACATGGCTAA 57.163 33.333 0.00 0.00 34.04 3.09
1166 1194 7.921786 TCCTATATATGCAACATGGCTAAAC 57.078 36.000 0.00 0.00 34.04 2.01
1167 1195 7.689299 TCCTATATATGCAACATGGCTAAACT 58.311 34.615 0.00 0.00 34.04 2.66
1168 1196 8.821817 TCCTATATATGCAACATGGCTAAACTA 58.178 33.333 0.00 0.00 34.04 2.24
1169 1197 9.448438 CCTATATATGCAACATGGCTAAACTAA 57.552 33.333 0.00 0.00 34.04 2.24
1204 1232 8.637196 AAGGAAGACTTTTATCTTTCCGATTT 57.363 30.769 0.00 0.00 39.08 2.17
1205 1233 8.045176 AGGAAGACTTTTATCTTTCCGATTTG 57.955 34.615 0.00 0.00 39.08 2.32
1206 1234 7.665974 AGGAAGACTTTTATCTTTCCGATTTGT 59.334 33.333 0.00 0.00 39.08 2.83
1207 1235 7.750903 GGAAGACTTTTATCTTTCCGATTTGTG 59.249 37.037 0.00 0.00 39.08 3.33
1208 1236 7.979444 AGACTTTTATCTTTCCGATTTGTGA 57.021 32.000 0.00 0.00 33.48 3.58
1209 1237 8.034058 AGACTTTTATCTTTCCGATTTGTGAG 57.966 34.615 0.00 0.00 33.48 3.51
1210 1238 7.119846 AGACTTTTATCTTTCCGATTTGTGAGG 59.880 37.037 0.00 0.00 33.48 3.86
1211 1239 6.940298 ACTTTTATCTTTCCGATTTGTGAGGA 59.060 34.615 0.00 0.00 33.48 3.71
1212 1240 7.447238 ACTTTTATCTTTCCGATTTGTGAGGAA 59.553 33.333 0.00 0.00 41.76 3.36
1213 1241 7.938140 TTTATCTTTCCGATTTGTGAGGAAT 57.062 32.000 0.00 0.00 42.81 3.01
1214 1242 5.824904 ATCTTTCCGATTTGTGAGGAATG 57.175 39.130 0.00 0.66 42.81 2.67
1215 1243 4.905429 TCTTTCCGATTTGTGAGGAATGA 58.095 39.130 7.62 7.62 42.81 2.57
1216 1244 5.312895 TCTTTCCGATTTGTGAGGAATGAA 58.687 37.500 8.84 0.00 42.81 2.57
1217 1245 5.767665 TCTTTCCGATTTGTGAGGAATGAAA 59.232 36.000 8.84 0.00 42.81 2.69
1218 1246 5.371115 TTCCGATTTGTGAGGAATGAAAC 57.629 39.130 0.00 0.00 38.94 2.78
1219 1247 3.435327 TCCGATTTGTGAGGAATGAAACG 59.565 43.478 0.00 0.00 0.00 3.60
1220 1248 3.435327 CCGATTTGTGAGGAATGAAACGA 59.565 43.478 0.00 0.00 0.00 3.85
1221 1249 4.436050 CCGATTTGTGAGGAATGAAACGAG 60.436 45.833 0.00 0.00 0.00 4.18
1222 1250 4.388773 CGATTTGTGAGGAATGAAACGAGA 59.611 41.667 0.00 0.00 0.00 4.04
1223 1251 5.107104 CGATTTGTGAGGAATGAAACGAGAA 60.107 40.000 0.00 0.00 0.00 2.87
1224 1252 6.565811 CGATTTGTGAGGAATGAAACGAGAAA 60.566 38.462 0.00 0.00 0.00 2.52
1225 1253 5.673337 TTGTGAGGAATGAAACGAGAAAG 57.327 39.130 0.00 0.00 0.00 2.62
1226 1254 4.956085 TGTGAGGAATGAAACGAGAAAGA 58.044 39.130 0.00 0.00 0.00 2.52
1227 1255 5.551233 TGTGAGGAATGAAACGAGAAAGAT 58.449 37.500 0.00 0.00 0.00 2.40
1245 1273 9.301153 GAGAAAGATGAAGATTAGAAGACTGAC 57.699 37.037 0.00 0.00 0.00 3.51
1283 1313 4.103153 TGAGAAAGATGGTCAAGGTCAAGT 59.897 41.667 0.00 0.00 0.00 3.16
1288 1318 0.254462 TGGTCAAGGTCAAGTGCACA 59.746 50.000 21.04 0.00 0.00 4.57
1289 1319 1.133823 TGGTCAAGGTCAAGTGCACAT 60.134 47.619 21.04 3.48 0.00 3.21
1291 1321 2.744202 GGTCAAGGTCAAGTGCACATAG 59.256 50.000 21.04 8.26 0.00 2.23
1292 1322 3.557054 GGTCAAGGTCAAGTGCACATAGA 60.557 47.826 21.04 10.67 0.00 1.98
1293 1323 3.433615 GTCAAGGTCAAGTGCACATAGAC 59.566 47.826 21.04 21.07 0.00 2.59
1294 1324 3.324846 TCAAGGTCAAGTGCACATAGACT 59.675 43.478 25.28 14.20 0.00 3.24
1295 1325 3.325293 AGGTCAAGTGCACATAGACTG 57.675 47.619 25.28 12.15 0.00 3.51
1296 1326 2.899900 AGGTCAAGTGCACATAGACTGA 59.100 45.455 25.28 13.77 0.00 3.41
1344 1542 2.035442 GCAGGTCACCTTCTTCCGC 61.035 63.158 0.00 0.00 0.00 5.54
2502 2700 1.226802 CGCCATGGAGTGAGACTCG 60.227 63.158 18.40 1.52 45.96 4.18
2507 2705 1.658686 ATGGAGTGAGACTCGCCGTC 61.659 60.000 12.42 4.71 45.96 4.79
2508 2706 3.384014 GGAGTGAGACTCGCCGTCG 62.384 68.421 12.42 0.00 45.96 5.12
2564 2767 4.568359 GTGTATTGTGCAGGTGAGAGTATG 59.432 45.833 0.00 0.00 0.00 2.39
2585 2836 9.547753 AGTATGTAGTAATAACTGGCAGAATTG 57.452 33.333 23.66 0.00 36.36 2.32
2602 2853 5.047802 CAGAATTGTGCTTGTACCCTTGAAT 60.048 40.000 0.00 0.00 0.00 2.57
2610 2861 4.261994 GCTTGTACCCTTGAATTGAAGCAA 60.262 41.667 0.00 0.00 35.68 3.91
2618 2869 7.452562 ACCCTTGAATTGAAGCAAAATTATGT 58.547 30.769 0.00 0.00 0.00 2.29
2628 2879 9.912634 TTGAAGCAAAATTATGTCTTTCTTAGG 57.087 29.630 0.00 0.00 0.00 2.69
2649 2900 5.488341 AGGCGAACTTCATACACAAATACT 58.512 37.500 0.00 0.00 0.00 2.12
2650 2901 5.581085 AGGCGAACTTCATACACAAATACTC 59.419 40.000 0.00 0.00 0.00 2.59
2651 2902 5.350365 GGCGAACTTCATACACAAATACTCA 59.650 40.000 0.00 0.00 0.00 3.41
2652 2903 6.037172 GGCGAACTTCATACACAAATACTCAT 59.963 38.462 0.00 0.00 0.00 2.90
2696 2948 6.709145 TTCATGCGAAAAAGGATCAAAATG 57.291 33.333 0.00 0.00 0.00 2.32
2716 2979 2.223782 TGACATGCAAAAGAACTGCCAC 60.224 45.455 0.00 0.00 39.13 5.01
2885 3167 3.912907 AACGCGCTATCGGAGGGG 61.913 66.667 5.73 0.00 38.55 4.79
2903 3185 3.839432 CGACTCCGCCTTCCCCTC 61.839 72.222 0.00 0.00 0.00 4.30
2904 3186 3.839432 GACTCCGCCTTCCCCTCG 61.839 72.222 0.00 0.00 0.00 4.63
3000 3287 0.523968 CATTGCAATGGAGTTCGCCG 60.524 55.000 28.34 1.76 32.78 6.46
3001 3288 2.270297 ATTGCAATGGAGTTCGCCGC 62.270 55.000 12.09 0.00 0.00 6.53
3002 3289 4.520846 GCAATGGAGTTCGCCGCG 62.521 66.667 6.39 6.39 0.00 6.46
3142 3429 4.763793 TGCCAAATCTCCTCTCTTTTCTTG 59.236 41.667 0.00 0.00 0.00 3.02
3149 3436 1.068954 CCTCTCTTTTCTTGCGGTTGC 60.069 52.381 0.00 0.00 43.20 4.17
3177 3464 1.539388 TCTATGCTTTGCGGTTTGTGG 59.461 47.619 0.00 0.00 0.00 4.17
3228 3515 1.878775 GTCCCTGACTGCACATTGC 59.121 57.895 0.00 0.00 45.29 3.56
3231 3518 1.065926 TCCCTGACTGCACATTGCTAG 60.066 52.381 0.00 0.00 45.31 3.42
3232 3519 1.339438 CCCTGACTGCACATTGCTAGT 60.339 52.381 0.00 1.85 45.31 2.57
3233 3520 2.430465 CCTGACTGCACATTGCTAGTT 58.570 47.619 0.00 0.00 45.31 2.24
3234 3521 2.417933 CCTGACTGCACATTGCTAGTTC 59.582 50.000 0.00 0.00 45.31 3.01
3235 3522 3.332919 CTGACTGCACATTGCTAGTTCT 58.667 45.455 0.00 0.00 45.31 3.01
3289 3628 3.312697 GGGGATTAGCGTGAGATTGTTTC 59.687 47.826 0.00 0.00 0.00 2.78
3292 3631 1.355971 TAGCGTGAGATTGTTTCGGC 58.644 50.000 0.00 0.00 0.00 5.54
3336 3675 5.782047 AGACAGATGATCATTCTCCGATTC 58.218 41.667 10.14 0.00 0.00 2.52
3341 3680 6.482641 CAGATGATCATTCTCCGATTCAGTTT 59.517 38.462 10.14 0.00 0.00 2.66
3449 3831 3.420893 TGGGCAAAAGAGGAATGTAGTG 58.579 45.455 0.00 0.00 0.00 2.74
3468 3850 6.978659 TGTAGTGTTTGTTCTCAGAGTTACAG 59.021 38.462 0.00 0.00 0.00 2.74
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.211573 TCTTTTGAAGTAGATCACAACCGTTA 58.788 34.615 0.00 0.00 0.00 3.18
1 2 6.053005 TCTTTTGAAGTAGATCACAACCGTT 58.947 36.000 0.00 0.00 0.00 4.44
2 3 5.607477 TCTTTTGAAGTAGATCACAACCGT 58.393 37.500 0.00 0.00 0.00 4.83
3 4 5.120830 CCTCTTTTGAAGTAGATCACAACCG 59.879 44.000 0.00 0.00 0.00 4.44
4 5 5.106515 GCCTCTTTTGAAGTAGATCACAACC 60.107 44.000 0.00 0.00 0.00 3.77
5 6 5.106515 GGCCTCTTTTGAAGTAGATCACAAC 60.107 44.000 0.00 0.00 0.00 3.32
6 7 5.003804 GGCCTCTTTTGAAGTAGATCACAA 58.996 41.667 0.00 0.00 0.00 3.33
7 8 4.287067 AGGCCTCTTTTGAAGTAGATCACA 59.713 41.667 0.00 0.00 0.00 3.58
8 9 4.837972 AGGCCTCTTTTGAAGTAGATCAC 58.162 43.478 0.00 0.00 0.00 3.06
9 10 5.721960 AGTAGGCCTCTTTTGAAGTAGATCA 59.278 40.000 9.68 0.00 0.00 2.92
10 11 6.228616 AGTAGGCCTCTTTTGAAGTAGATC 57.771 41.667 9.68 0.00 0.00 2.75
11 12 7.126733 TCTAGTAGGCCTCTTTTGAAGTAGAT 58.873 38.462 9.68 0.00 0.00 1.98
12 13 6.491383 TCTAGTAGGCCTCTTTTGAAGTAGA 58.509 40.000 9.68 9.32 0.00 2.59
13 14 6.777213 TCTAGTAGGCCTCTTTTGAAGTAG 57.223 41.667 9.68 6.76 0.00 2.57
14 15 7.180408 ACATTCTAGTAGGCCTCTTTTGAAGTA 59.820 37.037 9.68 0.00 0.00 2.24
15 16 6.013293 ACATTCTAGTAGGCCTCTTTTGAAGT 60.013 38.462 9.68 0.00 0.00 3.01
16 17 6.410540 ACATTCTAGTAGGCCTCTTTTGAAG 58.589 40.000 9.68 0.59 0.00 3.02
17 18 6.374417 ACATTCTAGTAGGCCTCTTTTGAA 57.626 37.500 9.68 9.55 0.00 2.69
18 19 6.374417 AACATTCTAGTAGGCCTCTTTTGA 57.626 37.500 9.68 0.00 0.00 2.69
19 20 7.040409 ACAAAACATTCTAGTAGGCCTCTTTTG 60.040 37.037 9.68 13.50 33.26 2.44
20 21 7.004691 ACAAAACATTCTAGTAGGCCTCTTTT 58.995 34.615 9.68 0.22 0.00 2.27
21 22 6.543735 ACAAAACATTCTAGTAGGCCTCTTT 58.456 36.000 9.68 0.00 0.00 2.52
22 23 6.128138 ACAAAACATTCTAGTAGGCCTCTT 57.872 37.500 9.68 0.07 0.00 2.85
23 24 5.763876 ACAAAACATTCTAGTAGGCCTCT 57.236 39.130 9.68 9.43 0.00 3.69
24 25 6.655425 AGAAACAAAACATTCTAGTAGGCCTC 59.345 38.462 9.68 0.21 34.24 4.70
25 26 6.543735 AGAAACAAAACATTCTAGTAGGCCT 58.456 36.000 11.78 11.78 34.24 5.19
26 27 6.819397 AGAAACAAAACATTCTAGTAGGCC 57.181 37.500 0.00 0.00 34.24 5.19
27 28 6.582672 GCAAGAAACAAAACATTCTAGTAGGC 59.417 38.462 0.00 0.00 34.90 3.93
28 29 7.084486 GGCAAGAAACAAAACATTCTAGTAGG 58.916 38.462 0.00 0.00 34.90 3.18
29 30 6.797033 CGGCAAGAAACAAAACATTCTAGTAG 59.203 38.462 0.00 0.00 34.90 2.57
30 31 6.293735 CCGGCAAGAAACAAAACATTCTAGTA 60.294 38.462 0.00 0.00 34.90 1.82
31 32 5.507315 CCGGCAAGAAACAAAACATTCTAGT 60.507 40.000 0.00 0.00 34.90 2.57
32 33 4.917415 CCGGCAAGAAACAAAACATTCTAG 59.083 41.667 0.00 0.00 34.90 2.43
33 34 4.261825 CCCGGCAAGAAACAAAACATTCTA 60.262 41.667 0.00 0.00 34.90 2.10
34 35 3.492482 CCCGGCAAGAAACAAAACATTCT 60.492 43.478 0.00 0.00 37.49 2.40
35 36 2.799978 CCCGGCAAGAAACAAAACATTC 59.200 45.455 0.00 0.00 0.00 2.67
36 37 2.432510 TCCCGGCAAGAAACAAAACATT 59.567 40.909 0.00 0.00 0.00 2.71
37 38 2.035632 TCCCGGCAAGAAACAAAACAT 58.964 42.857 0.00 0.00 0.00 2.71
38 39 1.475403 TCCCGGCAAGAAACAAAACA 58.525 45.000 0.00 0.00 0.00 2.83
39 40 2.812358 ATCCCGGCAAGAAACAAAAC 57.188 45.000 0.00 0.00 0.00 2.43
40 41 3.118592 ACAAATCCCGGCAAGAAACAAAA 60.119 39.130 0.00 0.00 0.00 2.44
41 42 2.432510 ACAAATCCCGGCAAGAAACAAA 59.567 40.909 0.00 0.00 0.00 2.83
42 43 2.035632 ACAAATCCCGGCAAGAAACAA 58.964 42.857 0.00 0.00 0.00 2.83
43 44 1.698506 ACAAATCCCGGCAAGAAACA 58.301 45.000 0.00 0.00 0.00 2.83
44 45 2.415491 GCTACAAATCCCGGCAAGAAAC 60.415 50.000 0.00 0.00 0.00 2.78
45 46 1.816224 GCTACAAATCCCGGCAAGAAA 59.184 47.619 0.00 0.00 0.00 2.52
46 47 1.271652 TGCTACAAATCCCGGCAAGAA 60.272 47.619 0.00 0.00 0.00 2.52
47 48 0.326595 TGCTACAAATCCCGGCAAGA 59.673 50.000 0.00 0.00 0.00 3.02
48 49 0.451783 GTGCTACAAATCCCGGCAAG 59.548 55.000 0.00 0.00 34.65 4.01
49 50 0.250945 TGTGCTACAAATCCCGGCAA 60.251 50.000 0.00 0.00 34.65 4.52
50 51 0.958382 GTGTGCTACAAATCCCGGCA 60.958 55.000 0.00 0.00 0.00 5.69
51 52 1.654023 GGTGTGCTACAAATCCCGGC 61.654 60.000 0.00 0.00 0.00 6.13
52 53 0.035439 AGGTGTGCTACAAATCCCGG 60.035 55.000 0.00 0.00 0.00 5.73
53 54 1.066143 AGAGGTGTGCTACAAATCCCG 60.066 52.381 0.00 0.00 0.00 5.14
54 55 2.789409 AGAGGTGTGCTACAAATCCC 57.211 50.000 0.00 0.00 0.00 3.85
55 56 6.759497 ATTAAAGAGGTGTGCTACAAATCC 57.241 37.500 0.00 0.00 0.00 3.01
56 57 9.476202 AAAAATTAAAGAGGTGTGCTACAAATC 57.524 29.630 0.00 0.00 0.00 2.17
86 87 9.601810 ACATTAGTGAATAGAGGGTGTATATGA 57.398 33.333 0.00 0.00 0.00 2.15
90 91 9.656323 TTCTACATTAGTGAATAGAGGGTGTAT 57.344 33.333 0.00 0.00 0.00 2.29
91 92 9.483489 TTTCTACATTAGTGAATAGAGGGTGTA 57.517 33.333 0.00 0.00 0.00 2.90
92 93 7.973048 TTCTACATTAGTGAATAGAGGGTGT 57.027 36.000 0.00 0.00 0.00 4.16
93 94 9.319143 CTTTTCTACATTAGTGAATAGAGGGTG 57.681 37.037 0.00 0.00 0.00 4.61
94 95 9.047947 ACTTTTCTACATTAGTGAATAGAGGGT 57.952 33.333 0.00 0.00 0.00 4.34
95 96 9.319143 CACTTTTCTACATTAGTGAATAGAGGG 57.681 37.037 0.00 0.00 40.24 4.30
96 97 8.821894 GCACTTTTCTACATTAGTGAATAGAGG 58.178 37.037 0.00 0.00 40.24 3.69
97 98 8.821894 GGCACTTTTCTACATTAGTGAATAGAG 58.178 37.037 0.00 0.00 40.24 2.43
98 99 8.318412 TGGCACTTTTCTACATTAGTGAATAGA 58.682 33.333 0.00 0.00 40.24 1.98
99 100 8.492673 TGGCACTTTTCTACATTAGTGAATAG 57.507 34.615 0.00 0.00 40.24 1.73
100 101 8.856153 TTGGCACTTTTCTACATTAGTGAATA 57.144 30.769 0.00 0.00 40.24 1.75
101 102 7.759489 TTGGCACTTTTCTACATTAGTGAAT 57.241 32.000 0.00 0.00 40.24 2.57
102 103 7.575414 TTTGGCACTTTTCTACATTAGTGAA 57.425 32.000 0.00 0.00 40.24 3.18
103 104 7.575414 TTTTGGCACTTTTCTACATTAGTGA 57.425 32.000 0.00 0.00 40.24 3.41
104 105 7.867403 ACATTTTGGCACTTTTCTACATTAGTG 59.133 33.333 0.00 0.00 40.65 2.74
105 106 7.951591 ACATTTTGGCACTTTTCTACATTAGT 58.048 30.769 0.00 0.00 0.00 2.24
106 107 8.299570 AGACATTTTGGCACTTTTCTACATTAG 58.700 33.333 0.00 0.00 0.00 1.73
107 108 8.177119 AGACATTTTGGCACTTTTCTACATTA 57.823 30.769 0.00 0.00 0.00 1.90
108 109 7.054491 AGACATTTTGGCACTTTTCTACATT 57.946 32.000 0.00 0.00 0.00 2.71
109 110 6.655078 AGACATTTTGGCACTTTTCTACAT 57.345 33.333 0.00 0.00 0.00 2.29
110 111 6.544197 TGTAGACATTTTGGCACTTTTCTACA 59.456 34.615 15.72 15.72 41.01 2.74
111 112 6.966021 TGTAGACATTTTGGCACTTTTCTAC 58.034 36.000 12.31 12.31 36.36 2.59
112 113 7.759489 ATGTAGACATTTTGGCACTTTTCTA 57.241 32.000 0.00 0.00 31.37 2.10
113 114 6.655078 ATGTAGACATTTTGGCACTTTTCT 57.345 33.333 0.00 0.00 31.37 2.52
114 115 8.082242 ACTAATGTAGACATTTTGGCACTTTTC 58.918 33.333 12.85 0.00 43.48 2.29
115 116 7.867403 CACTAATGTAGACATTTTGGCACTTTT 59.133 33.333 12.85 0.00 43.48 2.27
116 117 7.230510 TCACTAATGTAGACATTTTGGCACTTT 59.769 33.333 12.85 0.00 43.48 2.66
117 118 6.714810 TCACTAATGTAGACATTTTGGCACTT 59.285 34.615 12.85 0.00 43.48 3.16
118 119 6.237901 TCACTAATGTAGACATTTTGGCACT 58.762 36.000 12.85 0.00 43.48 4.40
119 120 6.494893 TCACTAATGTAGACATTTTGGCAC 57.505 37.500 12.85 0.00 43.48 5.01
120 121 5.123820 GCTCACTAATGTAGACATTTTGGCA 59.876 40.000 12.85 0.00 43.48 4.92
121 122 5.123820 TGCTCACTAATGTAGACATTTTGGC 59.876 40.000 12.85 14.10 43.48 4.52
122 123 6.741992 TGCTCACTAATGTAGACATTTTGG 57.258 37.500 12.85 7.05 43.48 3.28
123 124 8.292448 ACTTTGCTCACTAATGTAGACATTTTG 58.708 33.333 12.85 10.63 43.48 2.44
124 125 8.396272 ACTTTGCTCACTAATGTAGACATTTT 57.604 30.769 12.85 0.00 43.48 1.82
125 126 7.986085 ACTTTGCTCACTAATGTAGACATTT 57.014 32.000 12.85 0.00 43.48 2.32
127 128 7.841956 AGTACTTTGCTCACTAATGTAGACAT 58.158 34.615 0.00 0.00 38.41 3.06
128 129 7.228314 AGTACTTTGCTCACTAATGTAGACA 57.772 36.000 0.00 0.00 0.00 3.41
129 130 6.752815 GGAGTACTTTGCTCACTAATGTAGAC 59.247 42.308 0.00 0.00 34.83 2.59
130 131 6.127423 GGGAGTACTTTGCTCACTAATGTAGA 60.127 42.308 0.00 0.00 33.81 2.59
131 132 6.043411 GGGAGTACTTTGCTCACTAATGTAG 58.957 44.000 0.00 0.00 33.81 2.74
132 133 5.720041 AGGGAGTACTTTGCTCACTAATGTA 59.280 40.000 0.00 0.00 44.16 2.29
133 134 4.532521 AGGGAGTACTTTGCTCACTAATGT 59.467 41.667 0.00 0.00 44.16 2.71
134 135 5.091261 AGGGAGTACTTTGCTCACTAATG 57.909 43.478 0.00 0.00 44.16 1.90
135 136 4.162509 GGAGGGAGTACTTTGCTCACTAAT 59.837 45.833 0.00 0.00 45.78 1.73
136 137 3.514309 GGAGGGAGTACTTTGCTCACTAA 59.486 47.826 0.00 0.00 45.78 2.24
137 138 3.097614 GGAGGGAGTACTTTGCTCACTA 58.902 50.000 0.00 0.00 45.78 2.74
139 140 1.404315 CGGAGGGAGTACTTTGCTCAC 60.404 57.143 0.00 0.00 36.68 3.51
140 141 0.895530 CGGAGGGAGTACTTTGCTCA 59.104 55.000 0.00 0.00 34.83 4.26
141 142 0.896226 ACGGAGGGAGTACTTTGCTC 59.104 55.000 0.00 0.00 0.00 4.26
142 143 1.275573 GAACGGAGGGAGTACTTTGCT 59.724 52.381 0.00 0.00 0.00 3.91
143 144 1.275573 AGAACGGAGGGAGTACTTTGC 59.724 52.381 0.00 0.00 0.00 3.68
144 145 4.796038 TTAGAACGGAGGGAGTACTTTG 57.204 45.455 0.00 0.00 0.00 2.77
145 146 5.813513 TTTTAGAACGGAGGGAGTACTTT 57.186 39.130 0.00 0.00 0.00 2.66
146 147 6.894103 TCTATTTTAGAACGGAGGGAGTACTT 59.106 38.462 0.00 0.00 0.00 2.24
147 148 6.430007 TCTATTTTAGAACGGAGGGAGTACT 58.570 40.000 0.00 0.00 0.00 2.73
148 149 6.705863 TCTATTTTAGAACGGAGGGAGTAC 57.294 41.667 0.00 0.00 0.00 2.73
149 150 7.014038 GTCATCTATTTTAGAACGGAGGGAGTA 59.986 40.741 0.00 0.00 38.50 2.59
150 151 5.897824 TCATCTATTTTAGAACGGAGGGAGT 59.102 40.000 0.00 0.00 38.50 3.85
151 152 6.041069 AGTCATCTATTTTAGAACGGAGGGAG 59.959 42.308 0.00 0.00 38.50 4.30
152 153 5.897824 AGTCATCTATTTTAGAACGGAGGGA 59.102 40.000 0.00 0.00 38.50 4.20
153 154 6.163135 AGTCATCTATTTTAGAACGGAGGG 57.837 41.667 0.00 0.00 38.50 4.30
154 155 9.032420 GTTAAGTCATCTATTTTAGAACGGAGG 57.968 37.037 0.00 0.00 38.50 4.30
155 156 9.804758 AGTTAAGTCATCTATTTTAGAACGGAG 57.195 33.333 0.00 0.00 38.50 4.63
210 211 8.673711 CGTTCTGAAATAGATGACCCAAATTTA 58.326 33.333 0.00 0.00 34.80 1.40
211 212 7.362920 CCGTTCTGAAATAGATGACCCAAATTT 60.363 37.037 0.00 0.00 34.80 1.82
212 213 6.095440 CCGTTCTGAAATAGATGACCCAAATT 59.905 38.462 0.00 0.00 34.80 1.82
213 214 5.590259 CCGTTCTGAAATAGATGACCCAAAT 59.410 40.000 0.00 0.00 34.80 2.32
214 215 4.941263 CCGTTCTGAAATAGATGACCCAAA 59.059 41.667 0.00 0.00 34.80 3.28
215 216 4.224147 TCCGTTCTGAAATAGATGACCCAA 59.776 41.667 0.00 0.00 34.80 4.12
216 217 3.772572 TCCGTTCTGAAATAGATGACCCA 59.227 43.478 0.00 0.00 34.80 4.51
217 218 4.372656 CTCCGTTCTGAAATAGATGACCC 58.627 47.826 0.00 0.00 34.80 4.46
218 219 4.372656 CCTCCGTTCTGAAATAGATGACC 58.627 47.826 0.00 0.00 34.80 4.02
219 220 4.099573 TCCCTCCGTTCTGAAATAGATGAC 59.900 45.833 0.00 0.00 34.80 3.06
220 221 4.286707 TCCCTCCGTTCTGAAATAGATGA 58.713 43.478 0.00 0.00 34.80 2.92
221 222 4.100189 ACTCCCTCCGTTCTGAAATAGATG 59.900 45.833 0.00 0.00 34.80 2.90
222 223 4.290942 ACTCCCTCCGTTCTGAAATAGAT 58.709 43.478 0.00 0.00 34.80 1.98
223 224 3.709587 ACTCCCTCCGTTCTGAAATAGA 58.290 45.455 0.00 0.00 0.00 1.98
224 225 4.645588 ACTACTCCCTCCGTTCTGAAATAG 59.354 45.833 0.00 0.00 0.00 1.73
225 226 4.607239 ACTACTCCCTCCGTTCTGAAATA 58.393 43.478 0.00 0.00 0.00 1.40
226 227 3.442076 ACTACTCCCTCCGTTCTGAAAT 58.558 45.455 0.00 0.00 0.00 2.17
227 228 2.885616 ACTACTCCCTCCGTTCTGAAA 58.114 47.619 0.00 0.00 0.00 2.69
228 229 2.599408 ACTACTCCCTCCGTTCTGAA 57.401 50.000 0.00 0.00 0.00 3.02
229 230 3.947612 ATACTACTCCCTCCGTTCTGA 57.052 47.619 0.00 0.00 0.00 3.27
230 231 5.340439 AAAATACTACTCCCTCCGTTCTG 57.660 43.478 0.00 0.00 0.00 3.02
231 232 6.406737 GCTAAAAATACTACTCCCTCCGTTCT 60.407 42.308 0.00 0.00 0.00 3.01
232 233 5.752472 GCTAAAAATACTACTCCCTCCGTTC 59.248 44.000 0.00 0.00 0.00 3.95
233 234 5.188359 TGCTAAAAATACTACTCCCTCCGTT 59.812 40.000 0.00 0.00 0.00 4.44
234 235 4.713321 TGCTAAAAATACTACTCCCTCCGT 59.287 41.667 0.00 0.00 0.00 4.69
235 236 5.048507 GTGCTAAAAATACTACTCCCTCCG 58.951 45.833 0.00 0.00 0.00 4.63
236 237 6.236558 AGTGCTAAAAATACTACTCCCTCC 57.763 41.667 0.00 0.00 0.00 4.30
238 239 9.657728 ACTATAGTGCTAAAAATACTACTCCCT 57.342 33.333 4.10 0.00 30.47 4.20
257 258 9.979578 CGGTCTATCTATCCGTTATACTATAGT 57.020 37.037 10.87 10.87 39.51 2.12
260 261 8.922237 TCTCGGTCTATCTATCCGTTATACTAT 58.078 37.037 0.00 0.00 43.94 2.12
261 262 8.298729 TCTCGGTCTATCTATCCGTTATACTA 57.701 38.462 0.00 0.00 43.94 1.82
262 263 7.180322 TCTCGGTCTATCTATCCGTTATACT 57.820 40.000 0.00 0.00 43.94 2.12
263 264 9.195411 CTATCTCGGTCTATCTATCCGTTATAC 57.805 40.741 0.00 0.00 43.94 1.47
264 265 9.140874 TCTATCTCGGTCTATCTATCCGTTATA 57.859 37.037 0.00 0.00 43.94 0.98
265 266 8.020777 TCTATCTCGGTCTATCTATCCGTTAT 57.979 38.462 0.00 0.00 43.94 1.89
266 267 7.415592 TCTATCTCGGTCTATCTATCCGTTA 57.584 40.000 0.00 0.00 43.94 3.18
267 268 6.297080 TCTATCTCGGTCTATCTATCCGTT 57.703 41.667 0.00 0.00 43.94 4.44
268 269 5.936187 TCTATCTCGGTCTATCTATCCGT 57.064 43.478 0.00 0.00 43.94 4.69
269 270 6.256975 CAGTTCTATCTCGGTCTATCTATCCG 59.743 46.154 0.00 0.00 44.76 4.18
270 271 7.107542 ACAGTTCTATCTCGGTCTATCTATCC 58.892 42.308 0.00 0.00 0.00 2.59
271 272 7.279313 GGACAGTTCTATCTCGGTCTATCTATC 59.721 44.444 0.00 0.00 0.00 2.08
272 273 7.107542 GGACAGTTCTATCTCGGTCTATCTAT 58.892 42.308 0.00 0.00 0.00 1.98
273 274 6.465948 GGACAGTTCTATCTCGGTCTATCTA 58.534 44.000 0.00 0.00 0.00 1.98
274 275 5.310451 GGACAGTTCTATCTCGGTCTATCT 58.690 45.833 0.00 0.00 0.00 1.98
275 276 4.456566 GGGACAGTTCTATCTCGGTCTATC 59.543 50.000 0.00 0.00 0.00 2.08
276 277 4.105057 AGGGACAGTTCTATCTCGGTCTAT 59.895 45.833 0.00 0.00 0.00 1.98
277 278 3.458857 AGGGACAGTTCTATCTCGGTCTA 59.541 47.826 0.00 0.00 0.00 2.59
278 279 2.242708 AGGGACAGTTCTATCTCGGTCT 59.757 50.000 0.00 0.00 0.00 3.85
279 280 2.657143 AGGGACAGTTCTATCTCGGTC 58.343 52.381 0.00 0.00 0.00 4.79
280 281 2.830651 AGGGACAGTTCTATCTCGGT 57.169 50.000 0.00 0.00 0.00 4.69
281 282 5.793030 ATTTAGGGACAGTTCTATCTCGG 57.207 43.478 0.00 0.00 0.00 4.63
282 283 6.477033 CACAATTTAGGGACAGTTCTATCTCG 59.523 42.308 0.00 0.00 0.00 4.04
283 284 7.278868 CACACAATTTAGGGACAGTTCTATCTC 59.721 40.741 0.00 0.00 0.00 2.75
284 285 7.038302 TCACACAATTTAGGGACAGTTCTATCT 60.038 37.037 0.00 0.00 0.00 1.98
285 286 7.103641 TCACACAATTTAGGGACAGTTCTATC 58.896 38.462 0.00 0.00 0.00 2.08
286 287 7.016153 TCACACAATTTAGGGACAGTTCTAT 57.984 36.000 0.00 0.00 0.00 1.98
287 288 6.428083 TCACACAATTTAGGGACAGTTCTA 57.572 37.500 0.00 0.00 0.00 2.10
288 289 5.304686 TCACACAATTTAGGGACAGTTCT 57.695 39.130 0.00 0.00 0.00 3.01
289 290 4.083271 GCTCACACAATTTAGGGACAGTTC 60.083 45.833 0.00 0.00 0.00 3.01
290 291 3.821033 GCTCACACAATTTAGGGACAGTT 59.179 43.478 0.00 0.00 0.00 3.16
291 292 3.073062 AGCTCACACAATTTAGGGACAGT 59.927 43.478 0.00 0.00 0.00 3.55
292 293 3.679389 AGCTCACACAATTTAGGGACAG 58.321 45.455 0.00 0.00 0.00 3.51
293 294 3.788227 AGCTCACACAATTTAGGGACA 57.212 42.857 0.00 0.00 0.00 4.02
294 295 5.648092 ACAATAGCTCACACAATTTAGGGAC 59.352 40.000 0.00 0.00 0.00 4.46
295 296 5.815581 ACAATAGCTCACACAATTTAGGGA 58.184 37.500 0.00 0.00 0.00 4.20
296 297 5.647658 TGACAATAGCTCACACAATTTAGGG 59.352 40.000 0.00 0.00 0.00 3.53
297 298 6.372659 AGTGACAATAGCTCACACAATTTAGG 59.627 38.462 5.90 0.00 40.56 2.69
298 299 7.369803 AGTGACAATAGCTCACACAATTTAG 57.630 36.000 5.90 0.00 40.56 1.85
299 300 6.090763 CGAGTGACAATAGCTCACACAATTTA 59.909 38.462 5.90 0.00 40.56 1.40
300 301 5.106948 CGAGTGACAATAGCTCACACAATTT 60.107 40.000 5.90 0.00 40.56 1.82
301 302 4.389992 CGAGTGACAATAGCTCACACAATT 59.610 41.667 5.90 0.00 40.56 2.32
302 303 3.928992 CGAGTGACAATAGCTCACACAAT 59.071 43.478 5.90 0.00 40.56 2.71
303 304 3.317150 CGAGTGACAATAGCTCACACAA 58.683 45.455 5.90 0.00 40.56 3.33
304 305 2.926586 GCGAGTGACAATAGCTCACACA 60.927 50.000 0.48 0.00 40.56 3.72
305 306 1.656095 GCGAGTGACAATAGCTCACAC 59.344 52.381 0.48 0.00 40.56 3.82
306 307 1.272212 TGCGAGTGACAATAGCTCACA 59.728 47.619 9.35 0.00 40.56 3.58
307 308 1.923204 CTGCGAGTGACAATAGCTCAC 59.077 52.381 9.35 0.00 38.70 3.51
308 309 1.737029 GCTGCGAGTGACAATAGCTCA 60.737 52.381 9.35 0.00 0.00 4.26
309 310 0.926846 GCTGCGAGTGACAATAGCTC 59.073 55.000 9.35 0.00 0.00 4.09
310 311 0.534412 AGCTGCGAGTGACAATAGCT 59.466 50.000 9.35 1.39 36.74 3.32
311 312 0.926846 GAGCTGCGAGTGACAATAGC 59.073 55.000 0.73 0.73 0.00 2.97
312 313 2.458951 GAGAGCTGCGAGTGACAATAG 58.541 52.381 0.00 0.00 0.00 1.73
313 314 1.202188 CGAGAGCTGCGAGTGACAATA 60.202 52.381 0.00 0.00 0.00 1.90
314 315 0.457509 CGAGAGCTGCGAGTGACAAT 60.458 55.000 0.00 0.00 0.00 2.71
315 316 1.081175 CGAGAGCTGCGAGTGACAA 60.081 57.895 0.00 0.00 0.00 3.18
316 317 0.953960 TACGAGAGCTGCGAGTGACA 60.954 55.000 12.04 0.00 0.00 3.58
317 318 0.247894 CTACGAGAGCTGCGAGTGAC 60.248 60.000 12.04 0.00 0.00 3.67
318 319 0.391263 TCTACGAGAGCTGCGAGTGA 60.391 55.000 12.04 4.77 0.00 3.41
319 320 0.247894 GTCTACGAGAGCTGCGAGTG 60.248 60.000 12.04 2.82 0.00 3.51
320 321 0.673956 TGTCTACGAGAGCTGCGAGT 60.674 55.000 12.04 0.00 0.00 4.18
321 322 0.247894 GTGTCTACGAGAGCTGCGAG 60.248 60.000 12.04 5.86 0.00 5.03
322 323 0.953960 TGTGTCTACGAGAGCTGCGA 60.954 55.000 12.04 0.00 0.00 5.10
323 324 0.109735 TTGTGTCTACGAGAGCTGCG 60.110 55.000 0.00 0.00 0.00 5.18
324 325 1.989165 CTTTGTGTCTACGAGAGCTGC 59.011 52.381 0.00 0.00 0.00 5.25
325 326 1.989165 GCTTTGTGTCTACGAGAGCTG 59.011 52.381 0.00 0.00 0.00 4.24
326 327 1.401670 CGCTTTGTGTCTACGAGAGCT 60.402 52.381 0.00 0.00 0.00 4.09
327 328 0.985549 CGCTTTGTGTCTACGAGAGC 59.014 55.000 0.00 0.00 0.00 4.09
328 329 2.613730 TCGCTTTGTGTCTACGAGAG 57.386 50.000 0.00 0.00 0.00 3.20
329 330 2.606308 GGTTCGCTTTGTGTCTACGAGA 60.606 50.000 0.00 0.00 33.84 4.04
330 331 1.719780 GGTTCGCTTTGTGTCTACGAG 59.280 52.381 0.00 0.00 33.84 4.18
331 332 1.603678 GGGTTCGCTTTGTGTCTACGA 60.604 52.381 0.00 0.00 0.00 3.43
332 333 0.788391 GGGTTCGCTTTGTGTCTACG 59.212 55.000 0.00 0.00 0.00 3.51
333 334 1.873698 TGGGTTCGCTTTGTGTCTAC 58.126 50.000 0.00 0.00 0.00 2.59
334 335 2.215196 GTTGGGTTCGCTTTGTGTCTA 58.785 47.619 0.00 0.00 0.00 2.59
335 336 1.021968 GTTGGGTTCGCTTTGTGTCT 58.978 50.000 0.00 0.00 0.00 3.41
336 337 0.736053 TGTTGGGTTCGCTTTGTGTC 59.264 50.000 0.00 0.00 0.00 3.67
337 338 0.454196 GTGTTGGGTTCGCTTTGTGT 59.546 50.000 0.00 0.00 0.00 3.72
338 339 0.591236 CGTGTTGGGTTCGCTTTGTG 60.591 55.000 0.00 0.00 0.00 3.33
339 340 1.725066 CGTGTTGGGTTCGCTTTGT 59.275 52.632 0.00 0.00 0.00 2.83
340 341 1.657181 GCGTGTTGGGTTCGCTTTG 60.657 57.895 0.00 0.00 45.29 2.77
341 342 2.719354 GCGTGTTGGGTTCGCTTT 59.281 55.556 0.00 0.00 45.29 3.51
342 343 3.645975 CGCGTGTTGGGTTCGCTT 61.646 61.111 0.00 0.00 46.31 4.68
343 344 4.595538 TCGCGTGTTGGGTTCGCT 62.596 61.111 5.77 0.00 46.31 4.93
344 345 2.961669 ATTCGCGTGTTGGGTTCGC 61.962 57.895 5.77 0.00 45.28 4.70
345 346 1.154488 CATTCGCGTGTTGGGTTCG 60.154 57.895 5.77 0.00 0.00 3.95
346 347 1.209127 CCATTCGCGTGTTGGGTTC 59.791 57.895 5.77 0.00 0.00 3.62
347 348 2.914908 GCCATTCGCGTGTTGGGTT 61.915 57.895 20.45 0.00 0.00 4.11
348 349 2.457743 TAGCCATTCGCGTGTTGGGT 62.458 55.000 24.36 24.36 44.76 4.51
349 350 1.705337 CTAGCCATTCGCGTGTTGGG 61.705 60.000 20.45 11.93 44.76 4.12
350 351 1.019278 ACTAGCCATTCGCGTGTTGG 61.019 55.000 16.66 16.66 44.76 3.77
351 352 0.095245 CACTAGCCATTCGCGTGTTG 59.905 55.000 5.77 2.15 44.76 3.33
352 353 1.635663 GCACTAGCCATTCGCGTGTT 61.636 55.000 5.77 0.00 44.76 3.32
353 354 2.100631 GCACTAGCCATTCGCGTGT 61.101 57.895 5.77 0.00 44.76 4.49
354 355 1.634757 TTGCACTAGCCATTCGCGTG 61.635 55.000 5.77 0.00 44.76 5.34
355 356 0.744414 ATTGCACTAGCCATTCGCGT 60.744 50.000 5.77 0.00 44.76 6.01
356 357 0.378257 AATTGCACTAGCCATTCGCG 59.622 50.000 0.00 0.00 44.76 5.87
357 358 1.831343 CAATTGCACTAGCCATTCGC 58.169 50.000 0.00 0.00 41.13 4.70
358 359 1.831343 GCAATTGCACTAGCCATTCG 58.169 50.000 25.36 0.00 41.13 3.34
383 384 3.682858 CGTCTGGGAAAACACGTCATTAT 59.317 43.478 0.00 0.00 0.00 1.28
395 396 1.067846 CGTGATCTGACGTCTGGGAAA 60.068 52.381 20.57 3.53 34.56 3.13
396 397 0.526211 CGTGATCTGACGTCTGGGAA 59.474 55.000 20.57 3.88 34.56 3.97
475 476 2.125673 GGATCACGGTGTGGACGG 60.126 66.667 8.17 0.00 33.87 4.79
520 522 4.963276 TTCCATGATTAAACTCTTGCGG 57.037 40.909 0.00 0.00 0.00 5.69
529 531 6.239743 GGGGTTTCCAACTTTCCATGATTAAA 60.240 38.462 0.00 0.00 35.00 1.52
571 573 2.470821 CTGGGTTTTATAGGCGTCTCG 58.529 52.381 0.00 0.00 0.00 4.04
810 812 2.184579 CGGCCGAGAAGAAGGACC 59.815 66.667 24.07 0.00 29.70 4.46
1047 1056 0.034767 CCTGAAGCATGAGCAAGGGA 60.035 55.000 0.00 0.00 45.49 4.20
1050 1059 2.925306 GCAAACCTGAAGCATGAGCAAG 60.925 50.000 0.00 0.00 45.49 4.01
1096 1124 3.485947 TGCACGTAAGCAAAATGATCC 57.514 42.857 0.00 0.00 42.46 3.36
1106 1134 2.033299 ACAATATGCCATGCACGTAAGC 59.967 45.455 0.00 0.00 43.04 3.09
1134 1162 8.896744 CCATGTTGCATATATAGGATTAGTTGG 58.103 37.037 0.00 0.00 0.00 3.77
1141 1169 8.331740 AGTTTAGCCATGTTGCATATATAGGAT 58.668 33.333 0.00 0.00 0.00 3.24
1142 1170 7.689299 AGTTTAGCCATGTTGCATATATAGGA 58.311 34.615 0.00 0.00 0.00 2.94
1143 1171 7.928307 AGTTTAGCCATGTTGCATATATAGG 57.072 36.000 0.00 0.00 0.00 2.57
1174 1202 8.515414 CGGAAAGATAAAAGTCTTCCTTTCATT 58.485 33.333 19.72 4.79 42.62 2.57
1175 1203 7.883311 TCGGAAAGATAAAAGTCTTCCTTTCAT 59.117 33.333 19.72 0.00 42.62 2.57
1176 1204 7.221450 TCGGAAAGATAAAAGTCTTCCTTTCA 58.779 34.615 19.72 7.85 42.62 2.69
1177 1205 7.668525 TCGGAAAGATAAAAGTCTTCCTTTC 57.331 36.000 14.69 14.69 42.62 2.62
1178 1206 8.637196 AATCGGAAAGATAAAAGTCTTCCTTT 57.363 30.769 0.00 0.00 41.01 3.11
1179 1207 8.515414 CAAATCGGAAAGATAAAAGTCTTCCTT 58.485 33.333 0.00 0.00 38.98 3.36
1180 1208 7.665974 ACAAATCGGAAAGATAAAAGTCTTCCT 59.334 33.333 0.00 0.00 38.98 3.36
1181 1209 7.750903 CACAAATCGGAAAGATAAAAGTCTTCC 59.249 37.037 0.00 0.00 38.98 3.46
1182 1210 8.504005 TCACAAATCGGAAAGATAAAAGTCTTC 58.496 33.333 0.00 0.00 38.98 2.87
1183 1211 8.391075 TCACAAATCGGAAAGATAAAAGTCTT 57.609 30.769 0.00 0.00 38.98 3.01
1184 1212 7.119846 CCTCACAAATCGGAAAGATAAAAGTCT 59.880 37.037 0.00 0.00 38.98 3.24
1185 1213 7.119262 TCCTCACAAATCGGAAAGATAAAAGTC 59.881 37.037 0.00 0.00 38.98 3.01
1186 1214 6.940298 TCCTCACAAATCGGAAAGATAAAAGT 59.060 34.615 0.00 0.00 38.98 2.66
1187 1215 7.377766 TCCTCACAAATCGGAAAGATAAAAG 57.622 36.000 0.00 0.00 38.98 2.27
1188 1216 7.753309 TTCCTCACAAATCGGAAAGATAAAA 57.247 32.000 0.00 0.00 38.98 1.52
1189 1217 7.609918 TCATTCCTCACAAATCGGAAAGATAAA 59.390 33.333 0.00 0.00 39.97 1.40
1190 1218 7.109501 TCATTCCTCACAAATCGGAAAGATAA 58.890 34.615 0.00 0.00 39.97 1.75
1191 1219 6.649155 TCATTCCTCACAAATCGGAAAGATA 58.351 36.000 0.00 0.00 39.97 1.98
1192 1220 5.500234 TCATTCCTCACAAATCGGAAAGAT 58.500 37.500 0.00 0.00 39.97 2.40
1193 1221 4.905429 TCATTCCTCACAAATCGGAAAGA 58.095 39.130 0.00 0.00 39.97 2.52
1194 1222 5.627499 TTCATTCCTCACAAATCGGAAAG 57.373 39.130 0.00 0.00 39.97 2.62
1195 1223 5.561919 CGTTTCATTCCTCACAAATCGGAAA 60.562 40.000 0.00 0.00 39.97 3.13
1196 1224 4.083537 CGTTTCATTCCTCACAAATCGGAA 60.084 41.667 0.00 0.00 40.75 4.30
1197 1225 3.435327 CGTTTCATTCCTCACAAATCGGA 59.565 43.478 0.00 0.00 0.00 4.55
1198 1226 3.435327 TCGTTTCATTCCTCACAAATCGG 59.565 43.478 0.00 0.00 0.00 4.18
1199 1227 4.388773 TCTCGTTTCATTCCTCACAAATCG 59.611 41.667 0.00 0.00 0.00 3.34
1200 1228 5.862924 TCTCGTTTCATTCCTCACAAATC 57.137 39.130 0.00 0.00 0.00 2.17
1201 1229 6.486657 TCTTTCTCGTTTCATTCCTCACAAAT 59.513 34.615 0.00 0.00 0.00 2.32
1202 1230 5.820423 TCTTTCTCGTTTCATTCCTCACAAA 59.180 36.000 0.00 0.00 0.00 2.83
1203 1231 5.364778 TCTTTCTCGTTTCATTCCTCACAA 58.635 37.500 0.00 0.00 0.00 3.33
1204 1232 4.956085 TCTTTCTCGTTTCATTCCTCACA 58.044 39.130 0.00 0.00 0.00 3.58
1205 1233 5.639506 TCATCTTTCTCGTTTCATTCCTCAC 59.360 40.000 0.00 0.00 0.00 3.51
1206 1234 5.793817 TCATCTTTCTCGTTTCATTCCTCA 58.206 37.500 0.00 0.00 0.00 3.86
1207 1235 6.591834 TCTTCATCTTTCTCGTTTCATTCCTC 59.408 38.462 0.00 0.00 0.00 3.71
1208 1236 6.467677 TCTTCATCTTTCTCGTTTCATTCCT 58.532 36.000 0.00 0.00 0.00 3.36
1209 1237 6.727824 TCTTCATCTTTCTCGTTTCATTCC 57.272 37.500 0.00 0.00 0.00 3.01
1210 1238 9.913451 CTAATCTTCATCTTTCTCGTTTCATTC 57.087 33.333 0.00 0.00 0.00 2.67
1211 1239 9.658799 TCTAATCTTCATCTTTCTCGTTTCATT 57.341 29.630 0.00 0.00 0.00 2.57
1212 1240 9.658799 TTCTAATCTTCATCTTTCTCGTTTCAT 57.341 29.630 0.00 0.00 0.00 2.57
1213 1241 9.144747 CTTCTAATCTTCATCTTTCTCGTTTCA 57.855 33.333 0.00 0.00 0.00 2.69
1214 1242 9.360093 TCTTCTAATCTTCATCTTTCTCGTTTC 57.640 33.333 0.00 0.00 0.00 2.78
1215 1243 9.145865 GTCTTCTAATCTTCATCTTTCTCGTTT 57.854 33.333 0.00 0.00 0.00 3.60
1216 1244 8.527810 AGTCTTCTAATCTTCATCTTTCTCGTT 58.472 33.333 0.00 0.00 0.00 3.85
1217 1245 7.973388 CAGTCTTCTAATCTTCATCTTTCTCGT 59.027 37.037 0.00 0.00 0.00 4.18
1218 1246 8.187480 TCAGTCTTCTAATCTTCATCTTTCTCG 58.813 37.037 0.00 0.00 0.00 4.04
1219 1247 9.301153 GTCAGTCTTCTAATCTTCATCTTTCTC 57.699 37.037 0.00 0.00 0.00 2.87
1220 1248 9.034800 AGTCAGTCTTCTAATCTTCATCTTTCT 57.965 33.333 0.00 0.00 0.00 2.52
1223 1251 9.693739 TCTAGTCAGTCTTCTAATCTTCATCTT 57.306 33.333 0.00 0.00 0.00 2.40
1224 1252 9.866655 ATCTAGTCAGTCTTCTAATCTTCATCT 57.133 33.333 0.00 0.00 0.00 2.90
1227 1255 9.693739 AGAATCTAGTCAGTCTTCTAATCTTCA 57.306 33.333 0.00 0.00 0.00 3.02
1245 1273 9.263538 CCATCTTTCTCATCTCAAAGAATCTAG 57.736 37.037 0.00 0.00 40.99 2.43
1283 1313 5.102313 CGTCTGTTAATCAGTCTATGTGCA 58.898 41.667 0.00 0.00 43.97 4.57
1288 1318 5.123502 ACACGTCGTCTGTTAATCAGTCTAT 59.876 40.000 0.00 0.00 43.97 1.98
1289 1319 4.453478 ACACGTCGTCTGTTAATCAGTCTA 59.547 41.667 0.00 0.00 43.97 2.59
1291 1321 3.562505 ACACGTCGTCTGTTAATCAGTC 58.437 45.455 0.00 0.78 43.97 3.51
1292 1322 3.562505 GACACGTCGTCTGTTAATCAGT 58.437 45.455 0.00 0.00 43.97 3.41
1293 1323 2.588539 CGACACGTCGTCTGTTAATCAG 59.411 50.000 11.35 0.00 46.99 2.90
1294 1324 2.577450 CGACACGTCGTCTGTTAATCA 58.423 47.619 11.35 0.00 46.99 2.57
1318 1516 4.722700 GGTGACCTGCATGCCGGT 62.723 66.667 31.12 31.12 35.90 5.28
1319 1517 3.925630 AAGGTGACCTGCATGCCGG 62.926 63.158 24.93 24.93 32.13 6.13
1320 1518 2.360350 AAGGTGACCTGCATGCCG 60.360 61.111 16.68 9.00 32.13 5.69
1321 1519 0.610232 AAGAAGGTGACCTGCATGCC 60.610 55.000 16.68 0.00 29.53 4.40
1322 1520 0.807496 GAAGAAGGTGACCTGCATGC 59.193 55.000 13.18 11.82 29.53 4.06
1323 1521 1.457346 GGAAGAAGGTGACCTGCATG 58.543 55.000 13.18 0.00 29.53 4.06
1324 1522 0.036010 CGGAAGAAGGTGACCTGCAT 60.036 55.000 13.18 0.00 29.53 3.96
1325 1523 1.371183 CGGAAGAAGGTGACCTGCA 59.629 57.895 13.18 0.00 29.53 4.41
2355 2553 0.981277 ACCCCGGGTAGAACATGAGG 60.981 60.000 21.85 0.95 32.11 3.86
2459 2657 0.744281 CTCCTCGAAGAAGAGCTCCC 59.256 60.000 10.93 2.49 38.34 4.30
2502 2700 1.008881 TAGCACGATCATCGACGGC 60.009 57.895 15.60 13.92 43.74 5.68
2507 2705 0.028902 TGGACGTAGCACGATCATCG 59.971 55.000 5.22 5.22 46.05 3.84
2508 2706 1.478137 GTGGACGTAGCACGATCATC 58.522 55.000 14.18 3.05 46.05 2.92
2544 2747 5.656859 ACTACATACTCTCACCTGCACAATA 59.343 40.000 0.00 0.00 0.00 1.90
2546 2749 3.832490 ACTACATACTCTCACCTGCACAA 59.168 43.478 0.00 0.00 0.00 3.33
2564 2767 6.316390 AGCACAATTCTGCCAGTTATTACTAC 59.684 38.462 1.69 0.00 37.96 2.73
2585 2836 4.798574 CTTCAATTCAAGGGTACAAGCAC 58.201 43.478 0.00 0.00 0.00 4.40
2602 2853 9.912634 CCTAAGAAAGACATAATTTTGCTTCAA 57.087 29.630 0.00 0.00 0.00 2.69
2610 2861 7.923414 AGTTCGCCTAAGAAAGACATAATTT 57.077 32.000 0.00 0.00 0.00 1.82
2618 2869 5.867716 GTGTATGAAGTTCGCCTAAGAAAGA 59.132 40.000 0.00 0.00 0.00 2.52
2623 2874 5.856126 TTTGTGTATGAAGTTCGCCTAAG 57.144 39.130 0.00 0.00 0.00 2.18
2625 2876 6.636705 AGTATTTGTGTATGAAGTTCGCCTA 58.363 36.000 0.00 0.00 0.00 3.93
2628 2879 6.403333 TGAGTATTTGTGTATGAAGTTCGC 57.597 37.500 0.00 0.00 0.00 4.70
2696 2948 2.223782 TGTGGCAGTTCTTTTGCATGTC 60.224 45.455 0.00 0.00 43.28 3.06
2735 2998 7.429636 AATTCGGATCACGTTTTCTCTAAAA 57.570 32.000 0.00 0.00 44.69 1.52
3111 3398 1.452108 GAGATTTGGCAGTCCCGGG 60.452 63.158 16.85 16.85 35.87 5.73
3142 3429 1.331756 CATAGACATTGGAGCAACCGC 59.668 52.381 0.00 0.00 42.61 5.68
3149 3436 2.032550 CCGCAAAGCATAGACATTGGAG 59.967 50.000 0.00 0.00 0.00 3.86
3177 3464 8.382875 CAACACAAGAAAAATTCACTTTCTTCC 58.617 33.333 11.64 0.00 45.58 3.46
3256 3543 1.341852 GCTAATCCCCGAACCTCTCTC 59.658 57.143 0.00 0.00 0.00 3.20
3289 3628 4.744570 TCTTAGATTTGTACACTCTGCCG 58.255 43.478 14.59 5.76 0.00 5.69
3292 3631 7.821652 TGTCTCTCTTAGATTTGTACACTCTG 58.178 38.462 14.59 2.81 36.36 3.35
3336 3675 7.038154 TGAGAATTAGGGTGAACAAAAACTG 57.962 36.000 0.00 0.00 0.00 3.16
3341 3680 6.361433 TCAACTGAGAATTAGGGTGAACAAA 58.639 36.000 0.00 0.00 0.00 2.83
3413 3754 3.017048 TGCCCAGGATGAACCAATTAG 57.983 47.619 0.00 0.00 39.69 1.73
3468 3850 8.474577 CGCTATGTGCAAGATTTCATAATTTTC 58.525 33.333 0.00 0.00 43.06 2.29


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.