Multiple sequence alignment - TraesCS5A01G222700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G222700 chr5A 100.000 6059 0 0 1 6059 438785789 438791847 0.000000e+00 11189.0
1 TraesCS5A01G222700 chr5A 90.728 151 12 1 1 149 662726140 662725990 3.700000e-47 200.0
2 TraesCS5A01G222700 chr5D 89.978 2295 104 51 3100 5361 337527759 337529960 0.000000e+00 2848.0
3 TraesCS5A01G222700 chr5D 83.922 1275 63 56 840 2073 337525042 337526215 0.000000e+00 1088.0
4 TraesCS5A01G222700 chr5D 88.618 492 25 12 2477 2959 337527034 337527503 2.450000e-158 569.0
5 TraesCS5A01G222700 chr5D 93.277 238 11 2 218 455 337524507 337524739 4.500000e-91 346.0
6 TraesCS5A01G222700 chr5D 85.714 308 23 14 495 794 337524744 337525038 7.630000e-79 305.0
7 TraesCS5A01G222700 chr5D 92.202 218 14 3 2085 2300 337526263 337526479 7.630000e-79 305.0
8 TraesCS5A01G222700 chr5B 91.012 2036 71 34 3078 5067 396162592 396164561 0.000000e+00 2643.0
9 TraesCS5A01G222700 chr5B 86.387 1168 81 28 925 2073 396160192 396161300 0.000000e+00 1205.0
10 TraesCS5A01G222700 chr5B 96.439 702 24 1 5359 6059 586793173 586793874 0.000000e+00 1157.0
11 TraesCS5A01G222700 chr5B 85.626 487 31 18 2492 2957 396161896 396162364 5.500000e-130 475.0
12 TraesCS5A01G222700 chr5B 90.685 365 16 12 2120 2479 396161482 396161833 2.560000e-128 470.0
13 TraesCS5A01G222700 chr5B 85.151 431 31 14 497 914 396154374 396154784 1.570000e-110 411.0
14 TraesCS5A01G222700 chr5B 87.654 324 25 7 138 461 396154066 396154374 4.460000e-96 363.0
15 TraesCS5A01G222700 chr5B 85.795 176 9 10 5186 5361 396164644 396164803 8.070000e-39 172.0
16 TraesCS5A01G222700 chr5B 88.489 139 14 1 1 137 239702776 239702914 3.760000e-37 167.0
17 TraesCS5A01G222700 chr5B 91.346 104 7 1 2975 3078 396162460 396162561 2.280000e-29 141.0
18 TraesCS5A01G222700 chr1A 98.281 698 9 1 5362 6059 381103371 381104065 0.000000e+00 1219.0
19 TraesCS5A01G222700 chr1A 95.522 201 9 0 4368 4568 26844268 26844468 7.580000e-84 322.0
20 TraesCS5A01G222700 chr2A 97.851 698 12 1 5362 6059 58993041 58992347 0.000000e+00 1203.0
21 TraesCS5A01G222700 chr2A 87.143 140 16 2 1 138 700529979 700529840 2.260000e-34 158.0
22 TraesCS5A01G222700 chr2A 77.876 113 23 2 1302 1413 16617361 16617250 1.090000e-07 69.4
23 TraesCS5A01G222700 chr2A 76.991 113 24 2 1302 1413 16630310 16630199 5.070000e-06 63.9
24 TraesCS5A01G222700 chr6A 97.278 698 19 0 5362 6059 715664 714967 0.000000e+00 1184.0
25 TraesCS5A01G222700 chr6A 95.025 201 10 0 4368 4568 610327820 610328020 3.520000e-82 316.0
26 TraesCS5A01G222700 chr6A 84.286 70 10 1 4630 4698 439295612 439295543 3.920000e-07 67.6
27 TraesCS5A01G222700 chr4A 97.139 699 19 1 5362 6059 676503367 676502669 0.000000e+00 1179.0
28 TraesCS5A01G222700 chr2B 96.853 699 21 1 5362 6059 692617355 692618053 0.000000e+00 1168.0
29 TraesCS5A01G222700 chr2B 100.000 28 0 0 1231 1258 9131605 9131578 1.100000e-02 52.8
30 TraesCS5A01G222700 chr3D 96.710 699 22 1 5362 6059 4836131 4836829 0.000000e+00 1162.0
31 TraesCS5A01G222700 chr3D 95.455 198 9 0 4371 4568 18639031 18638834 3.520000e-82 316.0
32 TraesCS5A01G222700 chr4B 96.576 701 21 2 5362 6059 639146037 639146737 0.000000e+00 1158.0
33 TraesCS5A01G222700 chr4B 94.286 35 1 1 1231 1265 86073163 86073196 1.100000e-02 52.8
34 TraesCS5A01G222700 chr7A 96.562 698 20 2 5362 6059 172222305 172222998 0.000000e+00 1153.0
35 TraesCS5A01G222700 chr7A 83.107 882 132 16 3954 4825 714673654 714672780 0.000000e+00 787.0
36 TraesCS5A01G222700 chr7A 80.837 454 61 16 1090 1533 714677913 714677476 3.500000e-87 333.0
37 TraesCS5A01G222700 chr7A 85.616 146 19 1 1 144 669403262 669403117 1.050000e-32 152.0
38 TraesCS5A01G222700 chr7D 83.710 884 123 20 3954 4825 620251693 620252567 0.000000e+00 815.0
39 TraesCS5A01G222700 chr7D 79.560 455 68 17 1090 1533 620248524 620248964 9.870000e-78 302.0
40 TraesCS5A01G222700 chr7D 87.770 139 15 2 1 137 33061473 33061611 1.750000e-35 161.0
41 TraesCS5A01G222700 chr7B 82.426 882 138 15 3954 4825 715999141 716000015 0.000000e+00 754.0
42 TraesCS5A01G222700 chr7B 79.956 454 56 23 1090 1533 715996608 715997036 9.870000e-78 302.0
43 TraesCS5A01G222700 chr2D 95.025 201 10 0 4368 4568 133790543 133790743 3.520000e-82 316.0
44 TraesCS5A01G222700 chr2D 86.667 150 17 2 1 147 154390343 154390194 4.860000e-36 163.0
45 TraesCS5A01G222700 chr2D 76.923 104 22 2 1302 1404 14373555 14373657 2.360000e-04 58.4
46 TraesCS5A01G222700 chr3A 92.857 140 8 1 1 138 464234827 464234688 1.030000e-47 202.0
47 TraesCS5A01G222700 chr3B 88.489 139 14 1 2 138 657786293 657786431 3.760000e-37 167.0
48 TraesCS5A01G222700 chr1B 86.957 138 16 2 2 137 6792557 6792420 2.920000e-33 154.0
49 TraesCS5A01G222700 chr4D 94.286 35 1 1 1231 1265 57489200 57489233 1.100000e-02 52.8


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G222700 chr5A 438785789 438791847 6058 False 11189.000000 11189 100.000000 1 6059 1 chr5A.!!$F1 6058
1 TraesCS5A01G222700 chr5D 337524507 337529960 5453 False 910.166667 2848 88.951833 218 5361 6 chr5D.!!$F1 5143
2 TraesCS5A01G222700 chr5B 586793173 586793874 701 False 1157.000000 1157 96.439000 5359 6059 1 chr5B.!!$F2 700
3 TraesCS5A01G222700 chr5B 396160192 396164803 4611 False 851.000000 2643 88.475167 925 5361 6 chr5B.!!$F4 4436
4 TraesCS5A01G222700 chr5B 396154066 396154784 718 False 387.000000 411 86.402500 138 914 2 chr5B.!!$F3 776
5 TraesCS5A01G222700 chr1A 381103371 381104065 694 False 1219.000000 1219 98.281000 5362 6059 1 chr1A.!!$F2 697
6 TraesCS5A01G222700 chr2A 58992347 58993041 694 True 1203.000000 1203 97.851000 5362 6059 1 chr2A.!!$R3 697
7 TraesCS5A01G222700 chr6A 714967 715664 697 True 1184.000000 1184 97.278000 5362 6059 1 chr6A.!!$R1 697
8 TraesCS5A01G222700 chr4A 676502669 676503367 698 True 1179.000000 1179 97.139000 5362 6059 1 chr4A.!!$R1 697
9 TraesCS5A01G222700 chr2B 692617355 692618053 698 False 1168.000000 1168 96.853000 5362 6059 1 chr2B.!!$F1 697
10 TraesCS5A01G222700 chr3D 4836131 4836829 698 False 1162.000000 1162 96.710000 5362 6059 1 chr3D.!!$F1 697
11 TraesCS5A01G222700 chr4B 639146037 639146737 700 False 1158.000000 1158 96.576000 5362 6059 1 chr4B.!!$F2 697
12 TraesCS5A01G222700 chr7A 172222305 172222998 693 False 1153.000000 1153 96.562000 5362 6059 1 chr7A.!!$F1 697
13 TraesCS5A01G222700 chr7A 714672780 714677913 5133 True 560.000000 787 81.972000 1090 4825 2 chr7A.!!$R2 3735
14 TraesCS5A01G222700 chr7D 620248524 620252567 4043 False 558.500000 815 81.635000 1090 4825 2 chr7D.!!$F2 3735
15 TraesCS5A01G222700 chr7B 715996608 716000015 3407 False 528.000000 754 81.191000 1090 4825 2 chr7B.!!$F1 3735

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
804 818 0.031994 CCCAAAGTTTCAACGGGCAG 59.968 55.0 0.00 0.0 0.00 4.85 F
2750 4290 0.109086 CTGATCTTGACTGTCGCGGT 60.109 55.0 6.13 0.0 0.00 5.68 F
2796 4336 0.036022 AAGCACTCCAGTCCAGAAGC 59.964 55.0 0.00 0.0 0.00 3.86 F
3541 5249 0.249073 CGGATAGGGACTGCAACGAG 60.249 60.0 0.00 0.0 41.52 4.18 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2760 4300 0.232303 CTTGGCAAGACAACGACGAC 59.768 55.0 22.64 0.00 0.00 4.34 R
3656 5375 0.032815 TTGTCAACAGCGACGATGGA 59.967 50.0 18.40 2.86 38.84 3.41 R
3924 7899 0.109504 CCCACGGGTTACATTTTGCG 60.110 55.0 0.00 0.00 0.00 4.85 R
5472 10210 0.037975 TCTTAACCGTTCGGCCACTC 60.038 55.0 11.32 0.00 0.00 3.51 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
32 33 8.785329 TGTACACACTAGATTATCAATTTGCA 57.215 30.769 0.00 0.00 0.00 4.08
33 34 9.225436 TGTACACACTAGATTATCAATTTGCAA 57.775 29.630 0.00 0.00 0.00 4.08
55 56 8.917655 TGCAAATTAATTTAAGTCGTTTTAGGC 58.082 29.630 12.98 8.23 0.00 3.93
56 57 9.135843 GCAAATTAATTTAAGTCGTTTTAGGCT 57.864 29.630 12.98 0.00 0.00 4.58
60 61 9.836076 ATTAATTTAAGTCGTTTTAGGCTCAAC 57.164 29.630 0.00 0.00 0.00 3.18
61 62 5.678132 TTTAAGTCGTTTTAGGCTCAACC 57.322 39.130 0.00 0.00 39.61 3.77
62 63 2.922740 AGTCGTTTTAGGCTCAACCA 57.077 45.000 0.00 0.00 43.14 3.67
63 64 3.418684 AGTCGTTTTAGGCTCAACCAT 57.581 42.857 0.00 0.00 43.14 3.55
64 65 4.546829 AGTCGTTTTAGGCTCAACCATA 57.453 40.909 0.00 0.00 43.14 2.74
65 66 5.099042 AGTCGTTTTAGGCTCAACCATAT 57.901 39.130 0.00 0.00 43.14 1.78
66 67 4.876107 AGTCGTTTTAGGCTCAACCATATG 59.124 41.667 0.00 0.00 43.14 1.78
67 68 4.873827 GTCGTTTTAGGCTCAACCATATGA 59.126 41.667 3.65 0.00 43.14 2.15
68 69 5.353123 GTCGTTTTAGGCTCAACCATATGAA 59.647 40.000 3.65 0.00 43.14 2.57
69 70 6.038271 GTCGTTTTAGGCTCAACCATATGAAT 59.962 38.462 3.65 0.00 43.14 2.57
70 71 7.225931 GTCGTTTTAGGCTCAACCATATGAATA 59.774 37.037 3.65 0.00 43.14 1.75
71 72 7.441157 TCGTTTTAGGCTCAACCATATGAATAG 59.559 37.037 3.65 0.00 43.14 1.73
72 73 7.441157 CGTTTTAGGCTCAACCATATGAATAGA 59.559 37.037 3.65 0.00 43.14 1.98
73 74 9.120538 GTTTTAGGCTCAACCATATGAATAGAA 57.879 33.333 3.65 0.00 43.14 2.10
74 75 9.693739 TTTTAGGCTCAACCATATGAATAGAAA 57.306 29.630 3.65 0.00 43.14 2.52
75 76 9.693739 TTTAGGCTCAACCATATGAATAGAAAA 57.306 29.630 3.65 0.00 43.14 2.29
76 77 9.693739 TTAGGCTCAACCATATGAATAGAAAAA 57.306 29.630 3.65 0.00 43.14 1.94
110 111 9.668497 AATGTATTGTAACTTCTCTAACTTCCC 57.332 33.333 0.00 0.00 0.00 3.97
111 112 8.431910 TGTATTGTAACTTCTCTAACTTCCCT 57.568 34.615 0.00 0.00 0.00 4.20
112 113 8.877195 TGTATTGTAACTTCTCTAACTTCCCTT 58.123 33.333 0.00 0.00 0.00 3.95
113 114 9.368674 GTATTGTAACTTCTCTAACTTCCCTTC 57.631 37.037 0.00 0.00 0.00 3.46
114 115 7.613551 TTGTAACTTCTCTAACTTCCCTTCT 57.386 36.000 0.00 0.00 0.00 2.85
115 116 7.229581 TGTAACTTCTCTAACTTCCCTTCTC 57.770 40.000 0.00 0.00 0.00 2.87
116 117 6.781014 TGTAACTTCTCTAACTTCCCTTCTCA 59.219 38.462 0.00 0.00 0.00 3.27
117 118 6.749036 AACTTCTCTAACTTCCCTTCTCAA 57.251 37.500 0.00 0.00 0.00 3.02
118 119 6.943899 ACTTCTCTAACTTCCCTTCTCAAT 57.056 37.500 0.00 0.00 0.00 2.57
119 120 6.706295 ACTTCTCTAACTTCCCTTCTCAATG 58.294 40.000 0.00 0.00 0.00 2.82
120 121 6.271159 ACTTCTCTAACTTCCCTTCTCAATGT 59.729 38.462 0.00 0.00 0.00 2.71
121 122 6.688073 TCTCTAACTTCCCTTCTCAATGTT 57.312 37.500 0.00 0.00 0.00 2.71
122 123 7.792364 TCTCTAACTTCCCTTCTCAATGTTA 57.208 36.000 0.00 0.00 0.00 2.41
123 124 7.841956 TCTCTAACTTCCCTTCTCAATGTTAG 58.158 38.462 0.00 0.00 37.67 2.34
124 125 7.674348 TCTCTAACTTCCCTTCTCAATGTTAGA 59.326 37.037 0.00 0.00 40.75 2.10
125 126 7.841956 TCTAACTTCCCTTCTCAATGTTAGAG 58.158 38.462 0.00 0.00 39.24 2.43
126 127 6.441088 AACTTCCCTTCTCAATGTTAGAGT 57.559 37.500 0.00 0.00 34.73 3.24
127 128 7.554959 AACTTCCCTTCTCAATGTTAGAGTA 57.445 36.000 0.00 0.00 34.73 2.59
128 129 7.741554 ACTTCCCTTCTCAATGTTAGAGTAT 57.258 36.000 0.00 0.00 34.73 2.12
129 130 7.787028 ACTTCCCTTCTCAATGTTAGAGTATC 58.213 38.462 0.00 0.00 34.73 2.24
130 131 6.732896 TCCCTTCTCAATGTTAGAGTATCC 57.267 41.667 0.00 0.00 33.66 2.59
131 132 5.302059 TCCCTTCTCAATGTTAGAGTATCCG 59.698 44.000 0.00 0.00 33.66 4.18
132 133 5.509840 CCCTTCTCAATGTTAGAGTATCCGG 60.510 48.000 0.00 0.00 33.66 5.14
133 134 5.069251 CCTTCTCAATGTTAGAGTATCCGGT 59.931 44.000 0.00 0.00 33.66 5.28
134 135 6.407074 CCTTCTCAATGTTAGAGTATCCGGTT 60.407 42.308 0.00 0.00 33.66 4.44
135 136 6.145338 TCTCAATGTTAGAGTATCCGGTTC 57.855 41.667 0.00 0.00 33.66 3.62
136 137 5.068723 TCTCAATGTTAGAGTATCCGGTTCC 59.931 44.000 0.00 0.00 33.66 3.62
137 138 4.712829 TCAATGTTAGAGTATCCGGTTCCA 59.287 41.667 0.00 0.00 33.66 3.53
138 139 5.365605 TCAATGTTAGAGTATCCGGTTCCAT 59.634 40.000 0.00 0.00 33.66 3.41
139 140 6.551975 TCAATGTTAGAGTATCCGGTTCCATA 59.448 38.462 0.00 0.00 33.66 2.74
140 141 6.591750 ATGTTAGAGTATCCGGTTCCATAG 57.408 41.667 0.00 0.00 33.66 2.23
151 152 2.525368 GGTTCCATAGCCAAGGTGTTT 58.475 47.619 0.00 0.00 0.00 2.83
155 156 2.375174 TCCATAGCCAAGGTGTTTGTCT 59.625 45.455 0.00 0.00 34.87 3.41
161 162 2.413837 CCAAGGTGTTTGTCTACTCCG 58.586 52.381 0.00 0.00 36.91 4.63
164 165 0.320697 GGTGTTTGTCTACTCCGGCT 59.679 55.000 0.00 0.00 0.00 5.52
173 174 3.733344 TACTCCGGCTGCGCATTCC 62.733 63.158 12.24 14.86 0.00 3.01
223 224 1.702886 ACGCATGTTTCTCTCGTGAG 58.297 50.000 8.20 8.20 41.51 3.51
233 234 2.049433 CTCGTGAGGCGACGGTTT 60.049 61.111 11.37 0.00 45.68 3.27
236 237 2.943653 GTGAGGCGACGGTTTTGG 59.056 61.111 0.00 0.00 0.00 3.28
387 388 4.219846 GCTCGCTCTGCATGCACG 62.220 66.667 18.46 19.24 0.00 5.34
388 389 3.561213 CTCGCTCTGCATGCACGG 61.561 66.667 23.70 17.00 0.00 4.94
461 462 1.204856 GCGCCTCACGTCGGTAATAC 61.205 60.000 0.00 0.00 46.11 1.89
463 464 1.596464 CGCCTCACGTCGGTAATACTC 60.596 57.143 0.00 0.00 36.87 2.59
464 465 1.674962 GCCTCACGTCGGTAATACTCT 59.325 52.381 0.00 0.00 0.00 3.24
465 466 2.541178 GCCTCACGTCGGTAATACTCTG 60.541 54.545 0.00 0.00 0.00 3.35
466 467 2.681848 CCTCACGTCGGTAATACTCTGT 59.318 50.000 0.00 0.00 0.00 3.41
467 468 3.128242 CCTCACGTCGGTAATACTCTGTT 59.872 47.826 0.00 0.00 0.00 3.16
468 469 4.341099 CTCACGTCGGTAATACTCTGTTC 58.659 47.826 0.00 0.00 0.00 3.18
469 470 3.096461 CACGTCGGTAATACTCTGTTCG 58.904 50.000 0.00 0.00 0.00 3.95
470 471 2.096496 ACGTCGGTAATACTCTGTTCGG 59.904 50.000 0.00 0.00 0.00 4.30
471 472 2.352651 CGTCGGTAATACTCTGTTCGGA 59.647 50.000 0.00 0.00 0.00 4.55
472 473 3.689346 GTCGGTAATACTCTGTTCGGAC 58.311 50.000 0.00 0.00 0.00 4.79
473 474 2.352651 TCGGTAATACTCTGTTCGGACG 59.647 50.000 0.00 0.00 0.00 4.79
474 475 2.540361 CGGTAATACTCTGTTCGGACGG 60.540 54.545 0.00 0.00 0.00 4.79
475 476 2.424956 GGTAATACTCTGTTCGGACGGT 59.575 50.000 1.73 0.00 33.69 4.83
476 477 3.627577 GGTAATACTCTGTTCGGACGGTA 59.372 47.826 1.73 0.00 33.69 4.02
477 478 4.096382 GGTAATACTCTGTTCGGACGGTAA 59.904 45.833 1.73 0.00 33.69 2.85
478 479 4.996788 AATACTCTGTTCGGACGGTAAT 57.003 40.909 1.73 0.00 33.69 1.89
479 480 6.017109 GGTAATACTCTGTTCGGACGGTAATA 60.017 42.308 1.73 0.00 33.69 0.98
480 481 6.455360 AATACTCTGTTCGGACGGTAATAA 57.545 37.500 1.73 0.00 33.69 1.40
481 482 4.996788 ACTCTGTTCGGACGGTAATAAT 57.003 40.909 1.73 0.00 33.69 1.28
482 483 4.679662 ACTCTGTTCGGACGGTAATAATG 58.320 43.478 1.73 0.00 33.69 1.90
483 484 3.450578 TCTGTTCGGACGGTAATAATGC 58.549 45.455 1.73 0.00 33.69 3.56
484 485 3.119065 TCTGTTCGGACGGTAATAATGCA 60.119 43.478 1.73 0.00 33.69 3.96
485 486 3.191669 TGTTCGGACGGTAATAATGCAG 58.808 45.455 0.00 0.00 0.00 4.41
486 487 3.119065 TGTTCGGACGGTAATAATGCAGA 60.119 43.478 0.00 0.00 0.00 4.26
487 488 3.364889 TCGGACGGTAATAATGCAGAG 57.635 47.619 0.00 0.00 0.00 3.35
488 489 2.953648 TCGGACGGTAATAATGCAGAGA 59.046 45.455 0.00 0.00 0.00 3.10
489 490 3.050619 CGGACGGTAATAATGCAGAGAC 58.949 50.000 0.00 0.00 0.00 3.36
490 491 3.050619 GGACGGTAATAATGCAGAGACG 58.949 50.000 0.00 0.00 0.00 4.18
491 492 3.050619 GACGGTAATAATGCAGAGACGG 58.949 50.000 0.00 0.00 0.00 4.79
492 493 2.429610 ACGGTAATAATGCAGAGACGGT 59.570 45.455 0.00 0.00 0.00 4.83
493 494 3.118884 ACGGTAATAATGCAGAGACGGTT 60.119 43.478 0.00 0.00 0.00 4.44
494 495 3.869246 CGGTAATAATGCAGAGACGGTTT 59.131 43.478 0.00 0.00 0.00 3.27
495 496 5.045215 CGGTAATAATGCAGAGACGGTTTA 58.955 41.667 0.00 0.00 0.00 2.01
496 497 5.521010 CGGTAATAATGCAGAGACGGTTTAA 59.479 40.000 0.00 0.00 0.00 1.52
514 515 0.602905 AAAAAGAGCGGACAGGACGG 60.603 55.000 0.00 0.00 0.00 4.79
515 516 1.469335 AAAAGAGCGGACAGGACGGA 61.469 55.000 0.00 0.00 0.00 4.69
519 520 3.063084 GCGGACAGGACGGAGAGT 61.063 66.667 0.00 0.00 0.00 3.24
520 521 1.748122 GCGGACAGGACGGAGAGTA 60.748 63.158 0.00 0.00 0.00 2.59
535 541 2.682352 GAGAGTACTACCCTGTTCGGAC 59.318 54.545 0.00 0.00 33.16 4.79
573 579 1.400494 GTGCCCGATTTACACATGACC 59.600 52.381 0.00 0.00 34.43 4.02
585 591 0.991920 ACATGACCCCACCGAGAATT 59.008 50.000 0.00 0.00 0.00 2.17
586 592 2.093181 CACATGACCCCACCGAGAATTA 60.093 50.000 0.00 0.00 0.00 1.40
587 593 2.170607 ACATGACCCCACCGAGAATTAG 59.829 50.000 0.00 0.00 0.00 1.73
622 628 3.647771 GCCCCCGGTCTGTTTCCT 61.648 66.667 0.00 0.00 0.00 3.36
625 631 2.742372 CCCGGTCTGTTTCCTGCG 60.742 66.667 0.00 0.00 0.00 5.18
633 639 4.662145 GGTCTGTTTCCTGCGAAATAATG 58.338 43.478 0.00 0.00 40.08 1.90
645 651 3.120854 GCGAAATAATGCAGAGACGATCC 60.121 47.826 0.00 0.00 0.00 3.36
660 666 1.474478 CGATCCATCACGAGGGGATAG 59.526 57.143 6.88 4.32 41.39 2.08
708 719 3.907894 AGCGGACGAGATAAAGAGATC 57.092 47.619 0.00 0.00 0.00 2.75
712 723 3.560503 GGACGAGATAAAGAGATCGCAG 58.439 50.000 0.00 0.00 38.71 5.18
713 724 3.003897 GGACGAGATAAAGAGATCGCAGT 59.996 47.826 0.00 0.00 38.71 4.40
729 742 3.119291 CGCAGTAGAATCCAGTAGCTTG 58.881 50.000 0.00 0.00 0.00 4.01
732 745 2.101582 AGTAGAATCCAGTAGCTTGGCG 59.898 50.000 0.00 0.00 38.16 5.69
750 763 0.179171 CGACGAGACACTTACGCCAT 60.179 55.000 0.00 0.00 0.00 4.40
759 772 3.853475 ACACTTACGCCATTACAGTACC 58.147 45.455 0.00 0.00 0.00 3.34
768 781 3.555956 GCCATTACAGTACCACAAGATCG 59.444 47.826 0.00 0.00 0.00 3.69
804 818 0.031994 CCCAAAGTTTCAACGGGCAG 59.968 55.000 0.00 0.00 0.00 4.85
838 852 1.961277 GAGCACAGGGGAACACGTG 60.961 63.158 15.48 15.48 37.16 4.49
839 853 2.110213 GCACAGGGGAACACGTGA 59.890 61.111 25.01 0.00 36.44 4.35
840 854 2.251642 GCACAGGGGAACACGTGAC 61.252 63.158 25.01 15.20 36.44 3.67
841 855 1.954146 CACAGGGGAACACGTGACG 60.954 63.158 25.01 2.24 36.44 4.35
842 856 2.420043 CAGGGGAACACGTGACGT 59.580 61.111 25.01 4.10 42.36 4.34
888 902 4.256090 GCCAATTAGCGCGGCCAG 62.256 66.667 8.83 0.00 40.07 4.85
914 928 6.868864 CCTCCGTTGATTAATCGACTAATCAT 59.131 38.462 25.01 0.00 44.07 2.45
915 929 8.027189 CCTCCGTTGATTAATCGACTAATCATA 58.973 37.037 25.01 15.28 44.07 2.15
916 930 9.406828 CTCCGTTGATTAATCGACTAATCATAA 57.593 33.333 25.01 12.21 44.07 1.90
917 931 9.923143 TCCGTTGATTAATCGACTAATCATAAT 57.077 29.630 25.01 5.92 44.07 1.28
941 955 2.582687 CGTCTCGTCAGACTGTAAACC 58.417 52.381 1.59 0.00 46.31 3.27
943 957 3.549423 CGTCTCGTCAGACTGTAAACCAA 60.549 47.826 1.59 0.00 46.31 3.67
969 987 4.296690 CTCCGGTAAAATATCCTCGTGTC 58.703 47.826 0.00 0.00 0.00 3.67
979 997 0.178944 TCCTCGTGTCCTTCCCTCAA 60.179 55.000 0.00 0.00 0.00 3.02
980 998 0.247736 CCTCGTGTCCTTCCCTCAAG 59.752 60.000 0.00 0.00 0.00 3.02
1002 1038 4.070009 GCCCCTATTAATAAACCCTCACG 58.930 47.826 0.00 0.00 0.00 4.35
1048 1084 4.707840 CGCACGCACACGCAAGAG 62.708 66.667 0.00 0.00 45.53 2.85
1055 1091 3.923864 ACACGCAAGAGACCGCCA 61.924 61.111 0.00 0.00 43.62 5.69
1056 1092 3.114616 CACGCAAGAGACCGCCAG 61.115 66.667 0.00 0.00 43.62 4.85
1542 1623 3.376078 GTCCAGGTACGGACGGCA 61.376 66.667 4.43 0.00 45.77 5.69
1564 1645 1.037493 GGACCCAATTTAATCGCCCC 58.963 55.000 0.00 0.00 0.00 5.80
1565 1646 0.666374 GACCCAATTTAATCGCCCCG 59.334 55.000 0.00 0.00 0.00 5.73
1566 1647 1.362355 CCCAATTTAATCGCCCCGC 59.638 57.895 0.00 0.00 0.00 6.13
1567 1648 1.388065 CCCAATTTAATCGCCCCGCA 61.388 55.000 0.00 0.00 0.00 5.69
1570 1651 1.944024 CAATTTAATCGCCCCGCAGTA 59.056 47.619 0.00 0.00 0.00 2.74
1572 1653 2.335316 TTTAATCGCCCCGCAGTATT 57.665 45.000 0.00 0.00 0.00 1.89
1575 1656 1.021968 AATCGCCCCGCAGTATTTTC 58.978 50.000 0.00 0.00 0.00 2.29
1576 1657 0.180406 ATCGCCCCGCAGTATTTTCT 59.820 50.000 0.00 0.00 0.00 2.52
1579 1660 1.300481 GCCCCGCAGTATTTTCTCTC 58.700 55.000 0.00 0.00 0.00 3.20
1581 1662 1.475213 CCCCGCAGTATTTTCTCTCCC 60.475 57.143 0.00 0.00 0.00 4.30
1598 1679 2.543806 CCGTTTATTTTCGCGCGCG 61.544 57.895 44.84 44.84 41.35 6.86
1640 1722 1.582168 GCTCTGTACGTACGCCGAC 60.582 63.158 20.18 11.69 40.70 4.79
1714 2588 1.473278 ACAGTGAGGCGTACTAAGCTC 59.527 52.381 0.00 0.00 34.52 4.09
1758 2632 1.014352 CCGGATGTTGGATCGAAACC 58.986 55.000 0.00 5.25 0.00 3.27
1759 2633 1.677518 CCGGATGTTGGATCGAAACCA 60.678 52.381 10.05 10.05 35.47 3.67
1762 2636 3.874543 CGGATGTTGGATCGAAACCATAA 59.125 43.478 13.95 7.33 37.26 1.90
1785 2741 3.762823 TCTTTCTTCTTCCGAGGACCTAC 59.237 47.826 0.00 0.00 0.00 3.18
1850 2810 8.783093 CGTGGAATCTATCTATCTATCTCCATC 58.217 40.741 0.00 0.00 33.29 3.51
1975 2939 0.459585 GTACGCGAGCATCCTTGGAA 60.460 55.000 15.93 0.00 0.00 3.53
1992 2956 2.884012 TGGAAATCTTTGCATGACGTGT 59.116 40.909 0.00 0.00 33.44 4.49
1994 2958 2.336554 AATCTTTGCATGACGTGTGC 57.663 45.000 13.94 13.94 42.81 4.57
2007 2971 2.525750 CGTGTGCGTGCATCTTATTT 57.474 45.000 0.00 0.00 0.00 1.40
2073 3040 5.395768 AAAGATTACTTGAGCTCGTGGCTAT 60.396 40.000 9.64 0.00 42.76 2.97
2074 3041 7.397287 AAAGATTACTTGAGCTCGTGGCTATG 61.397 42.308 9.64 0.00 42.76 2.23
2080 3047 2.184322 CTCGTGGCTATGGCGTGT 59.816 61.111 0.00 0.00 39.81 4.49
2081 3048 2.125713 TCGTGGCTATGGCGTGTG 60.126 61.111 0.00 0.00 39.81 3.82
2092 3095 0.884259 TGGCGTGTGATTCACTGTGG 60.884 55.000 17.26 5.68 44.16 4.17
2094 3097 1.230635 GCGTGTGATTCACTGTGGCT 61.231 55.000 17.26 0.00 44.16 4.75
2095 3098 1.229428 CGTGTGATTCACTGTGGCTT 58.771 50.000 17.26 0.00 44.16 4.35
2097 3100 1.949525 GTGTGATTCACTGTGGCTTGT 59.050 47.619 17.26 0.00 43.13 3.16
2098 3101 3.138304 GTGTGATTCACTGTGGCTTGTA 58.862 45.455 17.26 0.00 43.13 2.41
2099 3102 3.058914 GTGTGATTCACTGTGGCTTGTAC 60.059 47.826 17.26 0.29 43.13 2.90
2103 3106 3.678056 TTCACTGTGGCTTGTACTAGG 57.322 47.619 8.11 0.00 0.00 3.02
2117 3120 6.751888 GCTTGTACTAGGTGCCAATAATTTTG 59.248 38.462 6.46 0.00 0.00 2.44
2306 3408 2.849966 CGCGCGACTTTGGATCGAG 61.850 63.158 28.94 0.00 42.25 4.04
2389 3496 1.938577 CATCTCATCTCGCTTGGTTGG 59.061 52.381 0.00 0.00 0.00 3.77
2391 3498 1.205655 TCTCATCTCGCTTGGTTGGAG 59.794 52.381 0.00 0.00 0.00 3.86
2392 3499 0.976641 TCATCTCGCTTGGTTGGAGT 59.023 50.000 0.00 0.00 0.00 3.85
2393 3500 1.347707 TCATCTCGCTTGGTTGGAGTT 59.652 47.619 0.00 0.00 0.00 3.01
2394 3501 1.466167 CATCTCGCTTGGTTGGAGTTG 59.534 52.381 0.00 0.00 0.00 3.16
2395 3502 0.884704 TCTCGCTTGGTTGGAGTTGC 60.885 55.000 0.00 0.00 0.00 4.17
2396 3503 2.175184 CTCGCTTGGTTGGAGTTGCG 62.175 60.000 0.00 0.00 43.95 4.85
2443 3901 2.892334 GCGTCTGCTTTGGCGTTCA 61.892 57.895 0.00 0.00 42.25 3.18
2447 3905 2.346803 GTCTGCTTTGGCGTTCATAGA 58.653 47.619 3.51 0.00 42.25 1.98
2454 3912 4.618227 GCTTTGGCGTTCATAGACCATTTT 60.618 41.667 0.00 0.00 30.85 1.82
2472 3930 9.346725 GACCATTTTCAGTGATGAAATTTCTAC 57.653 33.333 18.64 14.08 37.59 2.59
2545 4085 2.945456 ACCCAACCTTTTCTTCTGGTC 58.055 47.619 0.00 0.00 32.98 4.02
2592 4132 3.869272 GCTCACTGATTGCCGGCG 61.869 66.667 23.90 9.63 0.00 6.46
2644 4184 4.013728 GTGAGGTGAGATGACTAGTGACT 58.986 47.826 0.00 0.00 0.00 3.41
2650 4190 5.761234 GGTGAGATGACTAGTGACTAGTAGG 59.239 48.000 23.95 0.05 45.90 3.18
2668 4208 1.272769 AGGACACGTCTTGGAAGTAGC 59.727 52.381 0.00 0.00 0.00 3.58
2684 4224 0.822164 TAGCGGTACTCCAAGGAAGC 59.178 55.000 0.00 0.00 0.00 3.86
2685 4225 0.905337 AGCGGTACTCCAAGGAAGCT 60.905 55.000 0.00 0.00 0.00 3.74
2686 4226 0.460459 GCGGTACTCCAAGGAAGCTC 60.460 60.000 0.00 0.00 0.00 4.09
2687 4227 0.895530 CGGTACTCCAAGGAAGCTCA 59.104 55.000 0.00 0.00 0.00 4.26
2748 4288 1.916651 CTTCTGATCTTGACTGTCGCG 59.083 52.381 0.00 0.00 0.00 5.87
2749 4289 0.171231 TCTGATCTTGACTGTCGCGG 59.829 55.000 6.13 0.00 0.00 6.46
2750 4290 0.109086 CTGATCTTGACTGTCGCGGT 60.109 55.000 6.13 0.00 0.00 5.68
2751 4291 1.132453 CTGATCTTGACTGTCGCGGTA 59.868 52.381 6.13 0.00 0.00 4.02
2753 4293 1.132643 GATCTTGACTGTCGCGGTACT 59.867 52.381 6.13 0.00 0.00 2.73
2754 4294 0.520404 TCTTGACTGTCGCGGTACTC 59.480 55.000 6.13 0.00 0.00 2.59
2794 4334 0.397941 CCAAGCACTCCAGTCCAGAA 59.602 55.000 0.00 0.00 0.00 3.02
2795 4335 1.610102 CCAAGCACTCCAGTCCAGAAG 60.610 57.143 0.00 0.00 0.00 2.85
2796 4336 0.036022 AAGCACTCCAGTCCAGAAGC 59.964 55.000 0.00 0.00 0.00 3.86
2837 4377 4.039092 CAGGTGGTCCAGCAGGGG 62.039 72.222 22.74 5.84 37.22 4.79
2900 4466 1.956170 CAGTGTCCCAGTGTCGTGC 60.956 63.158 0.00 0.00 30.89 5.34
2919 4485 3.851128 GGCCTAGCCTCCGGTGAC 61.851 72.222 4.76 0.00 46.69 3.67
2925 4491 0.981183 TAGCCTCCGGTGACATGTTT 59.019 50.000 4.76 0.00 0.00 2.83
2931 4497 3.138304 CTCCGGTGACATGTTTCTTTCA 58.862 45.455 0.00 0.00 0.00 2.69
2936 4502 3.303791 GGTGACATGTTTCTTTCACCGTC 60.304 47.826 14.30 0.00 46.42 4.79
2948 4514 5.304778 TCTTTCACCGTCAAGATTCATTCA 58.695 37.500 0.00 0.00 0.00 2.57
2964 4552 3.436704 TCATTCATTTCGAGGCACAAGAC 59.563 43.478 0.00 0.00 0.00 3.01
2981 4628 4.230657 CAAGACGAATGAAGAAGAGTCGT 58.769 43.478 0.00 0.00 46.77 4.34
3015 4663 4.661125 TGCTTTGCACATTTACGATCATC 58.339 39.130 0.00 0.00 31.71 2.92
3017 4665 4.966366 GCTTTGCACATTTACGATCATCTC 59.034 41.667 0.00 0.00 0.00 2.75
3020 4668 5.529581 TGCACATTTACGATCATCTCCTA 57.470 39.130 0.00 0.00 0.00 2.94
3032 4680 8.567285 ACGATCATCTCCTACAAATTTTCTTT 57.433 30.769 0.00 0.00 0.00 2.52
3051 4699 8.621532 TTTCTTTGTGCTAATCTGTCAGTTAT 57.378 30.769 0.00 0.00 0.00 1.89
3052 4700 9.719355 TTTCTTTGTGCTAATCTGTCAGTTATA 57.281 29.630 0.00 0.00 0.00 0.98
3078 4726 0.485543 AAACGGGACCCCAGGAAAAT 59.514 50.000 4.46 0.00 35.37 1.82
3080 4728 0.845102 ACGGGACCCCAGGAAAATCT 60.845 55.000 4.46 0.00 35.37 2.40
3081 4729 0.331616 CGGGACCCCAGGAAAATCTT 59.668 55.000 4.46 0.00 35.37 2.40
3082 4730 1.562475 CGGGACCCCAGGAAAATCTTA 59.438 52.381 4.46 0.00 35.37 2.10
3083 4731 2.174854 CGGGACCCCAGGAAAATCTTAT 59.825 50.000 4.46 0.00 35.37 1.73
3084 4732 3.747708 CGGGACCCCAGGAAAATCTTATC 60.748 52.174 4.46 0.00 35.37 1.75
3093 4774 7.038658 CCCCAGGAAAATCTTATCTAGTCCTAG 60.039 44.444 0.00 0.00 32.74 3.02
3168 4858 2.372264 TCATTCAGCCCAGCTCATTTC 58.628 47.619 0.00 0.00 36.40 2.17
3169 4859 2.025605 TCATTCAGCCCAGCTCATTTCT 60.026 45.455 0.00 0.00 36.40 2.52
3170 4860 2.119801 TTCAGCCCAGCTCATTTCTC 57.880 50.000 0.00 0.00 36.40 2.87
3171 4861 0.986527 TCAGCCCAGCTCATTTCTCA 59.013 50.000 0.00 0.00 36.40 3.27
3172 4862 1.562942 TCAGCCCAGCTCATTTCTCAT 59.437 47.619 0.00 0.00 36.40 2.90
3173 4863 2.025605 TCAGCCCAGCTCATTTCTCATT 60.026 45.455 0.00 0.00 36.40 2.57
3174 4864 2.758979 CAGCCCAGCTCATTTCTCATTT 59.241 45.455 0.00 0.00 36.40 2.32
3175 4865 3.022406 AGCCCAGCTCATTTCTCATTTC 58.978 45.455 0.00 0.00 30.62 2.17
3195 4885 4.214986 TCAGGCTTATTTGATCGTCCAA 57.785 40.909 0.00 0.00 0.00 3.53
3219 4909 3.322254 TCTTATCTTTCTCCGGATCTGGC 59.678 47.826 16.48 0.00 0.00 4.85
3220 4910 0.761802 ATCTTTCTCCGGATCTGGCC 59.238 55.000 16.48 0.00 0.00 5.36
3224 4914 3.147595 CTCCGGATCTGGCCACGA 61.148 66.667 16.48 10.76 0.00 4.35
3226 4916 3.147595 CCGGATCTGGCCACGAGA 61.148 66.667 14.52 5.31 0.00 4.04
3227 4917 2.502492 CCGGATCTGGCCACGAGAT 61.502 63.158 14.52 10.22 32.63 2.75
3228 4918 1.300465 CGGATCTGGCCACGAGATG 60.300 63.158 10.52 0.00 29.97 2.90
3291 4987 3.618698 CAGCTGCATTTGATCTGAATCG 58.381 45.455 0.00 0.00 34.39 3.34
3368 5065 2.124903 CGCCGCATAGTTACCACTTAG 58.875 52.381 0.00 0.00 34.06 2.18
3541 5249 0.249073 CGGATAGGGACTGCAACGAG 60.249 60.000 0.00 0.00 41.52 4.18
3579 5297 1.562942 TGGAAGCTGGCTGATTCTCAT 59.437 47.619 19.41 0.00 40.60 2.90
3652 5371 1.138036 CTGTCGTGATACCGCCGAA 59.862 57.895 0.00 0.00 31.68 4.30
3691 5410 4.687901 TGACAATTTGGACAGAGAGTGA 57.312 40.909 0.78 0.00 0.00 3.41
3692 5411 4.635223 TGACAATTTGGACAGAGAGTGAG 58.365 43.478 0.78 0.00 0.00 3.51
3693 5412 4.101585 TGACAATTTGGACAGAGAGTGAGT 59.898 41.667 0.78 0.00 0.00 3.41
3694 5413 5.304357 TGACAATTTGGACAGAGAGTGAGTA 59.696 40.000 0.78 0.00 0.00 2.59
3695 5414 5.788450 ACAATTTGGACAGAGAGTGAGTAG 58.212 41.667 0.78 0.00 0.00 2.57
3696 5415 5.305644 ACAATTTGGACAGAGAGTGAGTAGT 59.694 40.000 0.78 0.00 0.00 2.73
3698 5417 2.701107 TGGACAGAGAGTGAGTAGTCG 58.299 52.381 0.00 0.00 0.00 4.18
3716 5442 2.006169 TCGCCGTCGTATTACAGTACA 58.994 47.619 0.00 0.00 36.96 2.90
3726 5452 9.110617 CGTCGTATTACAGTACACTATTATTGG 57.889 37.037 0.00 0.00 0.00 3.16
3728 5454 7.804600 TCGTATTACAGTACACTATTATTGGCG 59.195 37.037 0.00 0.00 0.00 5.69
3782 5968 2.041966 GAGTATGGTTATCGCGTGACG 58.958 52.381 5.77 0.00 45.62 4.35
3820 6750 9.998106 TTTTATACAGTAGAAAAGTTCAGAGCT 57.002 29.630 8.72 0.00 0.00 4.09
3823 6753 3.999663 CAGTAGAAAAGTTCAGAGCTGGG 59.000 47.826 0.00 0.00 0.00 4.45
3824 6754 1.902938 AGAAAAGTTCAGAGCTGGGC 58.097 50.000 0.00 0.00 0.00 5.36
3825 6755 0.519077 GAAAAGTTCAGAGCTGGGCG 59.481 55.000 0.00 0.00 0.00 6.13
3826 6756 0.890996 AAAAGTTCAGAGCTGGGCGG 60.891 55.000 0.00 0.00 0.00 6.13
3827 6757 3.909086 AAGTTCAGAGCTGGGCGGC 62.909 63.158 0.00 0.00 0.00 6.53
3828 6758 4.400961 GTTCAGAGCTGGGCGGCT 62.401 66.667 9.56 3.32 46.11 5.52
3829 6759 4.399395 TTCAGAGCTGGGCGGCTG 62.399 66.667 9.56 3.35 43.20 4.85
3840 6770 4.980903 GCGGCTGCACGGTGTTTG 62.981 66.667 14.08 1.78 42.15 2.93
3841 6771 3.276091 CGGCTGCACGGTGTTTGA 61.276 61.111 10.24 0.00 0.00 2.69
3842 6772 2.639286 GGCTGCACGGTGTTTGAG 59.361 61.111 10.24 2.59 0.00 3.02
3843 6773 2.050985 GCTGCACGGTGTTTGAGC 60.051 61.111 10.24 8.59 0.00 4.26
3844 6774 2.833533 GCTGCACGGTGTTTGAGCA 61.834 57.895 10.24 0.00 0.00 4.26
3845 6775 1.280746 CTGCACGGTGTTTGAGCAG 59.719 57.895 10.24 5.78 42.88 4.24
3846 6776 1.153269 TGCACGGTGTTTGAGCAGA 60.153 52.632 10.24 0.00 0.00 4.26
3847 6777 1.159713 TGCACGGTGTTTGAGCAGAG 61.160 55.000 10.24 0.00 0.00 3.35
3861 6791 3.186119 GAGCAGAGGAACAAAGAGATCG 58.814 50.000 0.00 0.00 0.00 3.69
3909 7884 1.921243 TGATCGTGCCATGTCTTACG 58.079 50.000 0.00 0.00 37.85 3.18
3924 7899 7.597743 CCATGTCTTACGGTTATTATACTGGAC 59.402 40.741 0.00 0.00 0.00 4.02
3927 7902 5.299028 TCTTACGGTTATTATACTGGACGCA 59.701 40.000 0.00 0.00 0.00 5.24
4688 9407 3.056328 GGCTGCCCCAAGTTCGTC 61.056 66.667 7.66 0.00 0.00 4.20
4864 9586 0.523072 GATGCGCCTTTCAAAGAGCA 59.477 50.000 18.30 18.30 42.68 4.26
4865 9587 0.242017 ATGCGCCTTTCAAAGAGCAC 59.758 50.000 18.35 6.94 41.85 4.40
4867 9589 1.795170 GCGCCTTTCAAAGAGCACCA 61.795 55.000 11.24 0.00 33.97 4.17
4868 9590 0.667993 CGCCTTTCAAAGAGCACCAA 59.332 50.000 0.00 0.00 0.00 3.67
4869 9591 1.335324 CGCCTTTCAAAGAGCACCAAG 60.335 52.381 0.00 0.00 0.00 3.61
4870 9592 1.956477 GCCTTTCAAAGAGCACCAAGA 59.044 47.619 0.00 0.00 0.00 3.02
4871 9593 2.030451 GCCTTTCAAAGAGCACCAAGAG 60.030 50.000 0.00 0.00 0.00 2.85
4872 9594 2.030451 CCTTTCAAAGAGCACCAAGAGC 60.030 50.000 0.00 0.00 0.00 4.09
4873 9595 1.609208 TTCAAAGAGCACCAAGAGCC 58.391 50.000 0.00 0.00 0.00 4.70
4874 9596 0.603707 TCAAAGAGCACCAAGAGCCG 60.604 55.000 0.00 0.00 0.00 5.52
4875 9597 1.968540 AAAGAGCACCAAGAGCCGC 60.969 57.895 0.00 0.00 0.00 6.53
4876 9598 3.909086 AAGAGCACCAAGAGCCGCC 62.909 63.158 0.00 0.00 0.00 6.13
4909 9635 2.176055 CGAGTCCGTCGTGTGGAG 59.824 66.667 0.00 0.00 44.20 3.86
4910 9636 2.614446 CGAGTCCGTCGTGTGGAGT 61.614 63.158 1.26 1.26 44.20 3.85
4911 9637 1.081376 GAGTCCGTCGTGTGGAGTG 60.081 63.158 5.61 0.00 39.28 3.51
4912 9638 2.733593 GTCCGTCGTGTGGAGTGC 60.734 66.667 0.00 0.00 35.82 4.40
4913 9639 3.986006 TCCGTCGTGTGGAGTGCC 61.986 66.667 0.00 0.00 0.00 5.01
4915 9641 4.640855 CGTCGTGTGGAGTGCCGT 62.641 66.667 0.00 0.00 36.79 5.68
4916 9642 2.733593 GTCGTGTGGAGTGCCGTC 60.734 66.667 0.00 0.00 36.79 4.79
4917 9643 3.986006 TCGTGTGGAGTGCCGTCC 61.986 66.667 0.00 0.00 36.79 4.79
4918 9644 4.293648 CGTGTGGAGTGCCGTCCA 62.294 66.667 0.00 0.00 44.82 4.02
4944 9670 4.270808 TGCTGTATCATAACGCAACAGATG 59.729 41.667 5.03 0.00 39.93 2.90
5077 9811 3.319122 GGTTTGGCTCTCAACTCATTTGT 59.681 43.478 0.00 0.00 36.49 2.83
5079 9813 5.183904 GGTTTGGCTCTCAACTCATTTGTAT 59.816 40.000 0.00 0.00 36.49 2.29
5081 9815 6.899393 TTGGCTCTCAACTCATTTGTATTT 57.101 33.333 0.00 0.00 36.49 1.40
5082 9816 6.258230 TGGCTCTCAACTCATTTGTATTTG 57.742 37.500 0.00 0.00 36.49 2.32
5084 9818 6.939730 TGGCTCTCAACTCATTTGTATTTGTA 59.060 34.615 0.00 0.00 36.49 2.41
5085 9819 7.446931 TGGCTCTCAACTCATTTGTATTTGTAA 59.553 33.333 0.00 0.00 36.49 2.41
5086 9820 8.462016 GGCTCTCAACTCATTTGTATTTGTAAT 58.538 33.333 0.00 0.00 36.49 1.89
5087 9821 9.495754 GCTCTCAACTCATTTGTATTTGTAATC 57.504 33.333 0.00 0.00 36.49 1.75
5088 9822 9.994432 CTCTCAACTCATTTGTATTTGTAATCC 57.006 33.333 0.00 0.00 36.49 3.01
5089 9823 9.513906 TCTCAACTCATTTGTATTTGTAATCCA 57.486 29.630 0.00 0.00 36.49 3.41
5092 9826 9.357652 CAACTCATTTGTATTTGTAATCCAAGG 57.642 33.333 0.00 0.00 33.75 3.61
5097 9831 5.554822 TGTATTTGTAATCCAAGGAACGC 57.445 39.130 0.00 0.00 33.75 4.84
5100 9834 0.391927 TGTAATCCAAGGAACGCCCG 60.392 55.000 0.00 0.00 40.87 6.13
5102 9836 0.108041 TAATCCAAGGAACGCCCGTC 60.108 55.000 0.00 0.00 40.87 4.79
5103 9837 2.119484 AATCCAAGGAACGCCCGTCA 62.119 55.000 0.00 0.00 40.87 4.35
5109 9843 3.186047 GAACGCCCGTCACCATCG 61.186 66.667 0.00 0.00 0.00 3.84
5138 9873 6.019318 GCACAAAAGGAGCAATGCTATTATTG 60.019 38.462 8.12 13.74 39.88 1.90
5139 9874 7.259882 CACAAAAGGAGCAATGCTATTATTGA 58.740 34.615 21.68 0.00 39.88 2.57
5144 9880 5.297776 AGGAGCAATGCTATTATTGACACAC 59.702 40.000 8.12 0.00 39.88 3.82
5165 9901 2.882927 AGTGCTACACTTTCGACACA 57.117 45.000 0.00 0.00 42.59 3.72
5166 9902 3.386768 AGTGCTACACTTTCGACACAT 57.613 42.857 0.00 0.00 42.59 3.21
5167 9903 3.318017 AGTGCTACACTTTCGACACATC 58.682 45.455 0.00 0.00 42.59 3.06
5168 9904 3.057019 GTGCTACACTTTCGACACATCA 58.943 45.455 0.00 0.00 0.00 3.07
5169 9905 3.121944 GTGCTACACTTTCGACACATCAG 59.878 47.826 0.00 0.00 0.00 2.90
5170 9906 2.092838 GCTACACTTTCGACACATCAGC 59.907 50.000 0.00 0.00 0.00 4.26
5171 9907 1.512926 ACACTTTCGACACATCAGCC 58.487 50.000 0.00 0.00 0.00 4.85
5172 9908 0.798776 CACTTTCGACACATCAGCCC 59.201 55.000 0.00 0.00 0.00 5.19
5173 9909 0.670546 ACTTTCGACACATCAGCCCG 60.671 55.000 0.00 0.00 0.00 6.13
5174 9910 0.670546 CTTTCGACACATCAGCCCGT 60.671 55.000 0.00 0.00 0.00 5.28
5175 9911 0.604073 TTTCGACACATCAGCCCGTA 59.396 50.000 0.00 0.00 0.00 4.02
5176 9912 0.172578 TTCGACACATCAGCCCGTAG 59.827 55.000 0.00 0.00 0.00 3.51
5177 9913 1.878522 CGACACATCAGCCCGTAGC 60.879 63.158 0.00 0.00 44.25 3.58
5217 9953 7.770897 AGTAGGTTTAGCATTTCTGTTATCTGG 59.229 37.037 0.00 0.00 0.00 3.86
5234 9970 9.159254 TGTTATCTGGACTACCAATTGATCTAT 57.841 33.333 7.12 0.00 46.32 1.98
5300 10036 6.728200 GCAAATAGCATGCTTAGTTCATGTA 58.272 36.000 28.02 3.33 44.79 2.29
5328 10064 4.518970 TGCTGACAAAGAATGTAAAGGTCC 59.481 41.667 0.00 0.00 44.12 4.46
5332 10068 4.070009 ACAAAGAATGTAAAGGTCCCGTC 58.930 43.478 0.00 0.00 41.63 4.79
5350 10086 2.349275 CGTCTCACTCTCTACTTCGTCC 59.651 54.545 0.00 0.00 0.00 4.79
5908 10651 2.942752 GCCTGATGATTGCCAGTTCTCA 60.943 50.000 0.00 0.00 0.00 3.27
5945 10688 1.751032 CGAGGTCTCTTGCTAGGGCTA 60.751 57.143 0.00 0.00 39.59 3.93
5999 10742 0.329261 CTCTGCATTTGGAGGGGTGA 59.671 55.000 0.00 0.00 34.00 4.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
6 7 9.394767 TGCAAATTGATAATCTAGTGTGTACAT 57.605 29.630 0.00 0.00 0.00 2.29
7 8 8.785329 TGCAAATTGATAATCTAGTGTGTACA 57.215 30.769 0.00 0.00 0.00 2.90
29 30 8.917655 GCCTAAAACGACTTAAATTAATTTGCA 58.082 29.630 21.19 8.62 0.00 4.08
30 31 9.135843 AGCCTAAAACGACTTAAATTAATTTGC 57.864 29.630 21.19 11.83 0.00 3.68
34 35 9.836076 GTTGAGCCTAAAACGACTTAAATTAAT 57.164 29.630 0.00 0.00 0.00 1.40
35 36 8.291740 GGTTGAGCCTAAAACGACTTAAATTAA 58.708 33.333 0.00 0.00 0.00 1.40
36 37 7.444792 TGGTTGAGCCTAAAACGACTTAAATTA 59.555 33.333 0.00 0.00 38.35 1.40
37 38 6.263617 TGGTTGAGCCTAAAACGACTTAAATT 59.736 34.615 0.00 0.00 38.35 1.82
38 39 5.766174 TGGTTGAGCCTAAAACGACTTAAAT 59.234 36.000 0.00 0.00 38.35 1.40
39 40 5.124645 TGGTTGAGCCTAAAACGACTTAAA 58.875 37.500 0.00 0.00 38.35 1.52
40 41 4.706035 TGGTTGAGCCTAAAACGACTTAA 58.294 39.130 0.00 0.00 38.35 1.85
41 42 4.339872 TGGTTGAGCCTAAAACGACTTA 57.660 40.909 0.00 0.00 38.35 2.24
42 43 3.202829 TGGTTGAGCCTAAAACGACTT 57.797 42.857 0.00 0.00 38.35 3.01
43 44 2.922740 TGGTTGAGCCTAAAACGACT 57.077 45.000 0.00 0.00 38.35 4.18
44 45 4.873827 TCATATGGTTGAGCCTAAAACGAC 59.126 41.667 2.13 0.00 38.35 4.34
45 46 5.092554 TCATATGGTTGAGCCTAAAACGA 57.907 39.130 2.13 0.00 38.35 3.85
46 47 5.811399 TTCATATGGTTGAGCCTAAAACG 57.189 39.130 2.13 0.00 38.35 3.60
47 48 8.677148 TCTATTCATATGGTTGAGCCTAAAAC 57.323 34.615 2.13 0.00 38.35 2.43
48 49 9.693739 TTTCTATTCATATGGTTGAGCCTAAAA 57.306 29.630 2.13 0.00 38.35 1.52
49 50 9.693739 TTTTCTATTCATATGGTTGAGCCTAAA 57.306 29.630 2.13 0.00 38.35 1.85
50 51 9.693739 TTTTTCTATTCATATGGTTGAGCCTAA 57.306 29.630 2.13 0.00 38.35 2.69
84 85 9.668497 GGGAAGTTAGAGAAGTTACAATACATT 57.332 33.333 0.00 0.00 31.15 2.71
85 86 9.047947 AGGGAAGTTAGAGAAGTTACAATACAT 57.952 33.333 0.00 0.00 31.15 2.29
86 87 8.431910 AGGGAAGTTAGAGAAGTTACAATACA 57.568 34.615 0.00 0.00 31.15 2.29
87 88 9.368674 GAAGGGAAGTTAGAGAAGTTACAATAC 57.631 37.037 0.00 0.00 31.15 1.89
88 89 9.322769 AGAAGGGAAGTTAGAGAAGTTACAATA 57.677 33.333 0.00 0.00 31.15 1.90
89 90 8.208575 AGAAGGGAAGTTAGAGAAGTTACAAT 57.791 34.615 0.00 0.00 31.15 2.71
90 91 7.289317 TGAGAAGGGAAGTTAGAGAAGTTACAA 59.711 37.037 0.00 0.00 31.15 2.41
91 92 6.781014 TGAGAAGGGAAGTTAGAGAAGTTACA 59.219 38.462 0.00 0.00 31.15 2.41
92 93 7.229581 TGAGAAGGGAAGTTAGAGAAGTTAC 57.770 40.000 0.00 0.00 0.00 2.50
93 94 7.850935 TTGAGAAGGGAAGTTAGAGAAGTTA 57.149 36.000 0.00 0.00 0.00 2.24
94 95 6.749036 TTGAGAAGGGAAGTTAGAGAAGTT 57.251 37.500 0.00 0.00 0.00 2.66
95 96 6.271159 ACATTGAGAAGGGAAGTTAGAGAAGT 59.729 38.462 0.00 0.00 0.00 3.01
96 97 6.706295 ACATTGAGAAGGGAAGTTAGAGAAG 58.294 40.000 0.00 0.00 0.00 2.85
97 98 6.688073 ACATTGAGAAGGGAAGTTAGAGAA 57.312 37.500 0.00 0.00 0.00 2.87
98 99 6.688073 AACATTGAGAAGGGAAGTTAGAGA 57.312 37.500 0.00 0.00 0.00 3.10
99 100 7.841956 TCTAACATTGAGAAGGGAAGTTAGAG 58.158 38.462 0.00 0.00 40.27 2.43
100 101 7.455008 ACTCTAACATTGAGAAGGGAAGTTAGA 59.545 37.037 0.00 0.00 41.85 2.10
101 102 7.616313 ACTCTAACATTGAGAAGGGAAGTTAG 58.384 38.462 0.00 0.00 38.67 2.34
102 103 7.554959 ACTCTAACATTGAGAAGGGAAGTTA 57.445 36.000 0.00 0.00 35.66 2.24
103 104 6.441088 ACTCTAACATTGAGAAGGGAAGTT 57.559 37.500 0.00 0.00 35.66 2.66
104 105 7.147637 GGATACTCTAACATTGAGAAGGGAAGT 60.148 40.741 0.00 0.00 35.66 3.01
105 106 7.213678 GGATACTCTAACATTGAGAAGGGAAG 58.786 42.308 0.00 0.00 35.66 3.46
106 107 6.183360 CGGATACTCTAACATTGAGAAGGGAA 60.183 42.308 0.00 0.00 35.66 3.97
107 108 5.302059 CGGATACTCTAACATTGAGAAGGGA 59.698 44.000 0.00 0.00 35.66 4.20
108 109 5.509840 CCGGATACTCTAACATTGAGAAGGG 60.510 48.000 0.00 0.00 35.66 3.95
109 110 5.069251 ACCGGATACTCTAACATTGAGAAGG 59.931 44.000 9.46 0.00 35.66 3.46
110 111 6.150396 ACCGGATACTCTAACATTGAGAAG 57.850 41.667 9.46 0.00 35.66 2.85
111 112 6.406624 GGAACCGGATACTCTAACATTGAGAA 60.407 42.308 9.46 0.00 35.66 2.87
112 113 5.068723 GGAACCGGATACTCTAACATTGAGA 59.931 44.000 9.46 0.00 35.66 3.27
113 114 5.163447 TGGAACCGGATACTCTAACATTGAG 60.163 44.000 9.46 0.00 37.55 3.02
114 115 4.712829 TGGAACCGGATACTCTAACATTGA 59.287 41.667 9.46 0.00 0.00 2.57
115 116 5.018539 TGGAACCGGATACTCTAACATTG 57.981 43.478 9.46 0.00 0.00 2.82
116 117 5.888982 ATGGAACCGGATACTCTAACATT 57.111 39.130 9.46 0.00 0.00 2.71
117 118 5.047235 GCTATGGAACCGGATACTCTAACAT 60.047 44.000 9.46 1.88 0.00 2.71
118 119 4.280174 GCTATGGAACCGGATACTCTAACA 59.720 45.833 9.46 0.00 0.00 2.41
119 120 4.321824 GGCTATGGAACCGGATACTCTAAC 60.322 50.000 9.46 0.00 0.00 2.34
120 121 3.830755 GGCTATGGAACCGGATACTCTAA 59.169 47.826 9.46 0.00 0.00 2.10
121 122 3.181426 TGGCTATGGAACCGGATACTCTA 60.181 47.826 9.46 0.00 0.00 2.43
122 123 2.249139 GGCTATGGAACCGGATACTCT 58.751 52.381 9.46 0.00 0.00 3.24
123 124 1.968493 TGGCTATGGAACCGGATACTC 59.032 52.381 9.46 0.00 0.00 2.59
124 125 2.097110 TGGCTATGGAACCGGATACT 57.903 50.000 9.46 0.00 0.00 2.12
125 126 2.550208 CCTTGGCTATGGAACCGGATAC 60.550 54.545 9.46 0.00 0.00 2.24
126 127 1.697432 CCTTGGCTATGGAACCGGATA 59.303 52.381 9.46 0.00 0.00 2.59
127 128 0.474184 CCTTGGCTATGGAACCGGAT 59.526 55.000 9.46 0.00 0.00 4.18
128 129 0.912487 ACCTTGGCTATGGAACCGGA 60.912 55.000 9.46 0.00 0.00 5.14
129 130 0.748005 CACCTTGGCTATGGAACCGG 60.748 60.000 9.11 0.00 0.00 5.28
130 131 0.035439 ACACCTTGGCTATGGAACCG 60.035 55.000 9.11 0.00 0.00 4.44
131 132 2.215942 AACACCTTGGCTATGGAACC 57.784 50.000 9.11 0.00 0.00 3.62
132 133 2.890945 ACAAACACCTTGGCTATGGAAC 59.109 45.455 9.11 0.00 39.56 3.62
133 134 3.153919 GACAAACACCTTGGCTATGGAA 58.846 45.455 9.11 0.00 40.29 3.53
134 135 2.790433 GACAAACACCTTGGCTATGGA 58.210 47.619 9.11 0.00 40.29 3.41
140 141 2.152016 GGAGTAGACAAACACCTTGGC 58.848 52.381 0.00 0.00 44.30 4.52
164 165 2.976840 GCCAGTTTCGGAATGCGCA 61.977 57.895 14.96 14.96 0.00 6.09
173 174 2.890474 CCGATCCGGCCAGTTTCG 60.890 66.667 2.24 5.44 41.17 3.46
223 224 4.676586 CGTGCCAAAACCGTCGCC 62.677 66.667 0.00 0.00 0.00 5.54
249 250 2.760374 AGAAACTGCTTCAGAACCGAG 58.240 47.619 0.29 0.00 36.40 4.63
344 345 4.415150 ACATGGAGCCTGTGCCCG 62.415 66.667 0.00 0.00 38.69 6.13
347 348 1.748122 CTGGACATGGAGCCTGTGC 60.748 63.158 0.00 0.00 35.72 4.57
461 462 3.489785 GCATTATTACCGTCCGAACAGAG 59.510 47.826 0.00 0.00 0.00 3.35
463 464 3.191669 TGCATTATTACCGTCCGAACAG 58.808 45.455 0.00 0.00 0.00 3.16
464 465 3.119065 TCTGCATTATTACCGTCCGAACA 60.119 43.478 0.00 0.00 0.00 3.18
465 466 3.450578 TCTGCATTATTACCGTCCGAAC 58.549 45.455 0.00 0.00 0.00 3.95
466 467 3.382227 TCTCTGCATTATTACCGTCCGAA 59.618 43.478 0.00 0.00 0.00 4.30
467 468 2.953648 TCTCTGCATTATTACCGTCCGA 59.046 45.455 0.00 0.00 0.00 4.55
468 469 3.050619 GTCTCTGCATTATTACCGTCCG 58.949 50.000 0.00 0.00 0.00 4.79
469 470 3.050619 CGTCTCTGCATTATTACCGTCC 58.949 50.000 0.00 0.00 0.00 4.79
470 471 3.050619 CCGTCTCTGCATTATTACCGTC 58.949 50.000 0.00 0.00 0.00 4.79
471 472 2.429610 ACCGTCTCTGCATTATTACCGT 59.570 45.455 0.00 0.00 0.00 4.83
472 473 3.093717 ACCGTCTCTGCATTATTACCG 57.906 47.619 0.00 0.00 0.00 4.02
473 474 6.913873 TTAAACCGTCTCTGCATTATTACC 57.086 37.500 0.00 0.00 0.00 2.85
474 475 9.274065 CTTTTTAAACCGTCTCTGCATTATTAC 57.726 33.333 0.00 0.00 0.00 1.89
475 476 9.221933 TCTTTTTAAACCGTCTCTGCATTATTA 57.778 29.630 0.00 0.00 0.00 0.98
476 477 8.106247 TCTTTTTAAACCGTCTCTGCATTATT 57.894 30.769 0.00 0.00 0.00 1.40
477 478 7.626452 GCTCTTTTTAAACCGTCTCTGCATTAT 60.626 37.037 0.00 0.00 0.00 1.28
478 479 6.348213 GCTCTTTTTAAACCGTCTCTGCATTA 60.348 38.462 0.00 0.00 0.00 1.90
479 480 5.562890 GCTCTTTTTAAACCGTCTCTGCATT 60.563 40.000 0.00 0.00 0.00 3.56
480 481 4.083271 GCTCTTTTTAAACCGTCTCTGCAT 60.083 41.667 0.00 0.00 0.00 3.96
481 482 3.250040 GCTCTTTTTAAACCGTCTCTGCA 59.750 43.478 0.00 0.00 0.00 4.41
482 483 3.664537 CGCTCTTTTTAAACCGTCTCTGC 60.665 47.826 0.00 0.00 0.00 4.26
483 484 3.120649 CCGCTCTTTTTAAACCGTCTCTG 60.121 47.826 0.00 0.00 0.00 3.35
484 485 3.064931 CCGCTCTTTTTAAACCGTCTCT 58.935 45.455 0.00 0.00 0.00 3.10
485 486 3.062042 TCCGCTCTTTTTAAACCGTCTC 58.938 45.455 0.00 0.00 0.00 3.36
486 487 2.804527 GTCCGCTCTTTTTAAACCGTCT 59.195 45.455 0.00 0.00 0.00 4.18
487 488 2.545106 TGTCCGCTCTTTTTAAACCGTC 59.455 45.455 0.00 0.00 0.00 4.79
488 489 2.546789 CTGTCCGCTCTTTTTAAACCGT 59.453 45.455 0.00 0.00 0.00 4.83
489 490 2.095919 CCTGTCCGCTCTTTTTAAACCG 60.096 50.000 0.00 0.00 0.00 4.44
490 491 3.058432 GTCCTGTCCGCTCTTTTTAAACC 60.058 47.826 0.00 0.00 0.00 3.27
491 492 3.363673 CGTCCTGTCCGCTCTTTTTAAAC 60.364 47.826 0.00 0.00 0.00 2.01
492 493 2.803956 CGTCCTGTCCGCTCTTTTTAAA 59.196 45.455 0.00 0.00 0.00 1.52
493 494 2.409975 CGTCCTGTCCGCTCTTTTTAA 58.590 47.619 0.00 0.00 0.00 1.52
494 495 1.337447 CCGTCCTGTCCGCTCTTTTTA 60.337 52.381 0.00 0.00 0.00 1.52
495 496 0.602905 CCGTCCTGTCCGCTCTTTTT 60.603 55.000 0.00 0.00 0.00 1.94
496 497 1.004918 CCGTCCTGTCCGCTCTTTT 60.005 57.895 0.00 0.00 0.00 2.27
514 515 2.682352 GTCCGAACAGGGTAGTACTCTC 59.318 54.545 0.00 0.00 41.52 3.20
515 516 2.720915 GTCCGAACAGGGTAGTACTCT 58.279 52.381 0.00 0.00 41.52 3.24
519 520 0.038166 ACCGTCCGAACAGGGTAGTA 59.962 55.000 0.00 0.00 41.52 1.82
520 521 0.038166 TACCGTCCGAACAGGGTAGT 59.962 55.000 0.00 0.00 41.52 2.73
535 541 2.843643 GCACGTGTTTGCATTATTACCG 59.156 45.455 18.38 0.00 42.49 4.02
573 579 7.464977 CGTGTTAAAATACTAATTCTCGGTGGG 60.465 40.741 0.00 0.00 0.00 4.61
585 591 4.423732 GGCGGAGTCGTGTTAAAATACTA 58.576 43.478 0.00 0.00 38.89 1.82
586 592 3.256558 GGCGGAGTCGTGTTAAAATACT 58.743 45.455 0.00 0.00 38.89 2.12
587 593 2.349580 GGGCGGAGTCGTGTTAAAATAC 59.650 50.000 0.00 0.00 38.89 1.89
622 628 2.887337 TCGTCTCTGCATTATTTCGCA 58.113 42.857 0.00 0.00 36.52 5.10
625 631 5.698089 TGATGGATCGTCTCTGCATTATTTC 59.302 40.000 0.00 0.00 0.00 2.17
633 639 0.382158 TCGTGATGGATCGTCTCTGC 59.618 55.000 0.00 0.00 0.00 4.26
638 644 1.107538 TCCCCTCGTGATGGATCGTC 61.108 60.000 0.00 0.00 0.00 4.20
645 651 0.319728 CCTGCTATCCCCTCGTGATG 59.680 60.000 0.00 0.00 0.00 3.07
673 684 1.438710 CGCTTTTGTGTCGCTTCCG 60.439 57.895 0.00 0.00 0.00 4.30
680 691 1.429463 ATCTCGTCCGCTTTTGTGTC 58.571 50.000 0.00 0.00 0.00 3.67
708 719 3.119291 CAAGCTACTGGATTCTACTGCG 58.881 50.000 0.00 0.00 0.00 5.18
712 723 2.100916 TCGCCAAGCTACTGGATTCTAC 59.899 50.000 8.71 0.00 38.96 2.59
713 724 2.100916 GTCGCCAAGCTACTGGATTCTA 59.899 50.000 8.71 0.00 38.96 2.10
729 742 2.150837 GCGTAAGTGTCTCGTCGCC 61.151 63.158 0.00 0.00 38.16 5.54
732 745 1.992170 AATGGCGTAAGTGTCTCGTC 58.008 50.000 0.00 0.00 41.68 4.20
750 763 3.167485 ACCCGATCTTGTGGTACTGTAA 58.833 45.455 0.00 0.00 0.00 2.41
759 772 3.367025 GTCGAAGTTAACCCGATCTTGTG 59.633 47.826 19.20 0.00 34.71 3.33
768 781 0.390340 GGGACGGTCGAAGTTAACCC 60.390 60.000 0.88 0.00 31.49 4.11
804 818 4.585526 TCATCGTGATCCGCCGGC 62.586 66.667 19.07 19.07 36.19 6.13
883 897 0.393808 TTAATCAACGGAGGCTGGCC 60.394 55.000 3.00 3.00 0.00 5.36
888 902 2.822764 AGTCGATTAATCAACGGAGGC 58.177 47.619 15.57 0.00 0.00 4.70
941 955 4.962155 AGGATATTTTACCGGAGCTCTTG 58.038 43.478 9.46 7.57 0.00 3.02
943 957 3.256136 CGAGGATATTTTACCGGAGCTCT 59.744 47.826 9.46 0.00 0.00 4.09
969 987 1.226311 AATAGGGGCTTGAGGGAAGG 58.774 55.000 0.00 0.00 31.56 3.46
979 997 4.202430 CGTGAGGGTTTATTAATAGGGGCT 60.202 45.833 0.00 0.00 0.00 5.19
980 998 4.070009 CGTGAGGGTTTATTAATAGGGGC 58.930 47.826 0.00 0.00 0.00 5.80
1036 1072 4.077188 GCGGTCTCTTGCGTGTGC 62.077 66.667 0.00 0.00 43.20 4.57
1038 1074 3.865929 CTGGCGGTCTCTTGCGTGT 62.866 63.158 0.00 0.00 0.00 4.49
1055 1091 4.774503 GCTTCTGCGCTGGGCTCT 62.775 66.667 17.81 0.00 44.05 4.09
1068 1104 0.026027 CGATCTCGCTTGCTTGCTTC 59.974 55.000 0.00 0.00 0.00 3.86
1538 1619 0.961358 TTAAATTGGGTCCGGTGCCG 60.961 55.000 0.00 3.25 39.44 5.69
1539 1620 1.407618 GATTAAATTGGGTCCGGTGCC 59.592 52.381 0.00 5.18 0.00 5.01
1540 1621 1.064952 CGATTAAATTGGGTCCGGTGC 59.935 52.381 0.00 0.00 0.00 5.01
1541 1622 1.064952 GCGATTAAATTGGGTCCGGTG 59.935 52.381 0.00 0.00 0.00 4.94
1542 1623 1.385528 GCGATTAAATTGGGTCCGGT 58.614 50.000 0.00 0.00 0.00 5.28
1545 1626 1.037493 GGGGCGATTAAATTGGGTCC 58.963 55.000 0.00 0.00 0.00 4.46
1546 1627 0.666374 CGGGGCGATTAAATTGGGTC 59.334 55.000 0.00 0.00 0.00 4.46
1550 1631 0.738389 ACTGCGGGGCGATTAAATTG 59.262 50.000 0.00 0.00 0.00 2.32
1551 1632 2.335316 TACTGCGGGGCGATTAAATT 57.665 45.000 0.00 0.00 0.00 1.82
1564 1645 2.295253 ACGGGAGAGAAAATACTGCG 57.705 50.000 0.00 0.00 0.00 5.18
1565 1646 6.679327 AATAAACGGGAGAGAAAATACTGC 57.321 37.500 0.00 0.00 0.00 4.40
1566 1647 7.903431 CGAAAATAAACGGGAGAGAAAATACTG 59.097 37.037 0.00 0.00 0.00 2.74
1567 1648 7.413767 GCGAAAATAAACGGGAGAGAAAATACT 60.414 37.037 0.00 0.00 0.00 2.12
1570 1651 5.637809 GCGAAAATAAACGGGAGAGAAAAT 58.362 37.500 0.00 0.00 0.00 1.82
1572 1653 3.123959 CGCGAAAATAAACGGGAGAGAAA 59.876 43.478 0.00 0.00 43.19 2.52
1575 1656 1.267383 GCGCGAAAATAAACGGGAGAG 60.267 52.381 12.10 0.00 43.19 3.20
1576 1657 0.722848 GCGCGAAAATAAACGGGAGA 59.277 50.000 12.10 0.00 43.19 3.71
1579 1660 2.212330 GCGCGCGAAAATAAACGGG 61.212 57.895 37.18 0.00 43.34 5.28
1640 1722 2.811317 GCGAGGGCGAACAGTCAG 60.811 66.667 0.00 0.00 40.82 3.51
1710 2584 2.936912 GCACGACTGTCTGGGAGCT 61.937 63.158 6.21 0.00 0.00 4.09
1714 2588 2.430921 GTCGCACGACTGTCTGGG 60.431 66.667 15.56 11.03 41.57 4.45
1732 2606 1.940613 GATCCAACATCCGGTAACTGC 59.059 52.381 0.00 0.00 0.00 4.40
1758 2632 5.755861 GGTCCTCGGAAGAAGAAAGATTATG 59.244 44.000 0.00 0.00 41.32 1.90
1759 2633 5.663556 AGGTCCTCGGAAGAAGAAAGATTAT 59.336 40.000 0.00 0.00 41.32 1.28
1762 2636 3.445987 AGGTCCTCGGAAGAAGAAAGAT 58.554 45.455 0.00 0.00 41.32 2.40
1785 2741 9.438291 CTTAAACCTCGCAGATAAAACAATATG 57.562 33.333 0.00 0.00 33.89 1.78
1902 2862 9.349713 AGCATCCGGTTCTATCATTTTAATAAA 57.650 29.630 0.00 0.00 0.00 1.40
1903 2863 8.783093 CAGCATCCGGTTCTATCATTTTAATAA 58.217 33.333 0.00 0.00 0.00 1.40
1904 2864 7.390440 CCAGCATCCGGTTCTATCATTTTAATA 59.610 37.037 0.00 0.00 0.00 0.98
1905 2865 6.207417 CCAGCATCCGGTTCTATCATTTTAAT 59.793 38.462 0.00 0.00 0.00 1.40
1906 2866 5.530915 CCAGCATCCGGTTCTATCATTTTAA 59.469 40.000 0.00 0.00 0.00 1.52
1975 2939 1.400113 CGCACACGTCATGCAAAGATT 60.400 47.619 18.67 0.00 43.57 2.40
2020 2984 5.618798 CCGATCAACGACGACTAAATACTAC 59.381 44.000 0.00 0.00 45.77 2.73
2021 2985 5.523552 TCCGATCAACGACGACTAAATACTA 59.476 40.000 0.00 0.00 45.77 1.82
2022 2986 4.333649 TCCGATCAACGACGACTAAATACT 59.666 41.667 0.00 0.00 45.77 2.12
2023 2987 4.591202 TCCGATCAACGACGACTAAATAC 58.409 43.478 0.00 0.00 45.77 1.89
2027 2991 2.349590 TCTCCGATCAACGACGACTAA 58.650 47.619 0.00 0.00 45.77 2.24
2078 3045 2.346766 ACAAGCCACAGTGAATCACA 57.653 45.000 16.38 0.00 36.74 3.58
2080 3047 3.769739 AGTACAAGCCACAGTGAATCA 57.230 42.857 0.62 0.00 0.00 2.57
2081 3048 4.184629 CCTAGTACAAGCCACAGTGAATC 58.815 47.826 0.62 0.00 0.00 2.52
2092 3095 6.451064 AAATTATTGGCACCTAGTACAAGC 57.549 37.500 0.00 0.00 0.00 4.01
2094 3097 6.435904 AGCAAAATTATTGGCACCTAGTACAA 59.564 34.615 0.00 0.00 38.00 2.41
2095 3098 5.949354 AGCAAAATTATTGGCACCTAGTACA 59.051 36.000 0.00 0.00 38.00 2.90
2097 3100 8.582657 TTTAGCAAAATTATTGGCACCTAGTA 57.417 30.769 0.00 0.00 38.00 1.82
2098 3101 7.363793 CCTTTAGCAAAATTATTGGCACCTAGT 60.364 37.037 0.00 0.00 38.00 2.57
2099 3102 6.980397 CCTTTAGCAAAATTATTGGCACCTAG 59.020 38.462 0.00 0.00 38.00 3.02
2103 3106 6.162777 TCACCTTTAGCAAAATTATTGGCAC 58.837 36.000 0.00 0.00 38.00 5.01
2117 3120 2.286654 GCATTCATCGCTCACCTTTAGC 60.287 50.000 0.00 0.00 36.60 3.09
2173 3275 2.353030 GTTCGTGCAAACCGCCAC 60.353 61.111 0.00 0.00 41.33 5.01
2270 3372 1.203928 CGTCATCTGCTTCATCCGTC 58.796 55.000 0.00 0.00 0.00 4.79
2273 3375 1.930100 CGCGTCATCTGCTTCATCC 59.070 57.895 0.00 0.00 0.00 3.51
2346 3448 1.348008 TGAGATCATCCCCTGTGGCC 61.348 60.000 0.00 0.00 0.00 5.36
2368 3475 2.419159 CCAACCAAGCGAGATGAGATGA 60.419 50.000 0.00 0.00 0.00 2.92
2389 3496 2.251371 GCCGTTGGTTCGCAACTC 59.749 61.111 0.00 0.00 0.00 3.01
2391 3498 4.676586 CCGCCGTTGGTTCGCAAC 62.677 66.667 0.00 0.00 0.00 4.17
2395 3502 4.383602 CAAGCCGCCGTTGGTTCG 62.384 66.667 0.00 0.00 0.00 3.95
2396 3503 4.038080 CCAAGCCGCCGTTGGTTC 62.038 66.667 3.69 0.00 39.82 3.62
2454 3912 7.923344 GCTAGCTAGTAGAAATTTCATCACTGA 59.077 37.037 21.62 8.10 0.00 3.41
2495 3976 4.692625 GTGAAGTCAACTACAGCACATGAT 59.307 41.667 0.00 0.00 35.60 2.45
2545 4085 2.670934 GCCACAGTGCACTCCCTG 60.671 66.667 18.64 12.23 34.82 4.45
2592 4132 0.932399 ACTGTTGGTTACGTTCACGC 59.068 50.000 0.00 0.00 44.43 5.34
2644 4184 3.759581 ACTTCCAAGACGTGTCCTACTA 58.240 45.455 0.00 0.00 0.00 1.82
2650 4190 1.337821 CGCTACTTCCAAGACGTGTC 58.662 55.000 0.00 0.00 0.00 3.67
2668 4208 0.895530 TGAGCTTCCTTGGAGTACCG 59.104 55.000 0.00 0.00 39.42 4.02
2687 4227 4.586001 GGGGAATTGATTATGCACATCAGT 59.414 41.667 9.72 5.47 32.20 3.41
2748 4288 2.402787 GACGACGAGCGGAGTACC 59.597 66.667 0.00 0.00 46.49 3.34
2749 4289 2.021106 CGACGACGAGCGGAGTAC 59.979 66.667 0.00 0.00 46.49 2.73
2750 4290 2.029288 AACGACGACGAGCGGAGTA 61.029 57.895 15.32 0.00 46.49 2.59
2751 4291 3.352222 AACGACGACGAGCGGAGT 61.352 61.111 15.32 4.02 46.49 3.85
2753 4293 3.584250 GACAACGACGACGAGCGGA 62.584 63.158 15.32 0.00 46.49 5.54
2754 4294 3.164011 GACAACGACGACGAGCGG 61.164 66.667 15.32 2.77 46.49 5.52
2756 4296 1.767388 CAAGACAACGACGACGAGC 59.233 57.895 15.32 0.12 42.66 5.03
2757 4297 1.606350 GGCAAGACAACGACGACGAG 61.606 60.000 15.32 8.51 42.66 4.18
2758 4298 1.659335 GGCAAGACAACGACGACGA 60.659 57.895 15.32 0.00 42.66 4.20
2759 4299 1.484227 TTGGCAAGACAACGACGACG 61.484 55.000 5.58 5.58 45.75 5.12
2760 4300 0.232303 CTTGGCAAGACAACGACGAC 59.768 55.000 22.64 0.00 0.00 4.34
2919 4485 4.811555 TCTTGACGGTGAAAGAAACATG 57.188 40.909 0.00 0.00 29.59 3.21
2925 4491 5.304778 TGAATGAATCTTGACGGTGAAAGA 58.695 37.500 5.58 5.58 36.87 2.52
2931 4497 4.935205 TCGAAATGAATGAATCTTGACGGT 59.065 37.500 0.00 0.00 0.00 4.83
2936 4502 5.032863 GTGCCTCGAAATGAATGAATCTTG 58.967 41.667 0.00 0.00 0.00 3.02
2948 4514 2.163818 TTCGTCTTGTGCCTCGAAAT 57.836 45.000 0.00 0.00 38.91 2.17
2964 4552 4.333095 TCCTCTACGACTCTTCTTCATTCG 59.667 45.833 0.00 0.00 35.80 3.34
2981 4628 0.035056 GCAAAGCAAGGCCTCCTCTA 60.035 55.000 5.23 0.00 30.89 2.43
3015 4663 9.346725 GATTAGCACAAAGAAAATTTGTAGGAG 57.653 33.333 5.72 0.00 40.30 3.69
3017 4665 9.132521 CAGATTAGCACAAAGAAAATTTGTAGG 57.867 33.333 5.72 0.00 40.30 3.18
3020 4668 8.196771 TGACAGATTAGCACAAAGAAAATTTGT 58.803 29.630 0.28 0.28 42.75 2.83
3032 4680 8.288689 TGTACTATAACTGACAGATTAGCACA 57.711 34.615 10.08 10.31 0.00 4.57
3051 4699 1.203162 TGGGGTCCCGTTTCTGTACTA 60.203 52.381 0.48 0.00 39.42 1.82
3052 4700 0.472352 TGGGGTCCCGTTTCTGTACT 60.472 55.000 0.48 0.00 39.42 2.73
3062 4710 0.331616 AAGATTTTCCTGGGGTCCCG 59.668 55.000 0.48 0.00 39.42 5.14
3168 4858 6.369059 ACGATCAAATAAGCCTGAAATGAG 57.631 37.500 0.00 0.00 0.00 2.90
3169 4859 5.296780 GGACGATCAAATAAGCCTGAAATGA 59.703 40.000 0.00 0.00 0.00 2.57
3170 4860 5.066375 TGGACGATCAAATAAGCCTGAAATG 59.934 40.000 0.00 0.00 0.00 2.32
3171 4861 5.192927 TGGACGATCAAATAAGCCTGAAAT 58.807 37.500 0.00 0.00 0.00 2.17
3172 4862 4.584874 TGGACGATCAAATAAGCCTGAAA 58.415 39.130 0.00 0.00 0.00 2.69
3173 4863 4.214986 TGGACGATCAAATAAGCCTGAA 57.785 40.909 0.00 0.00 0.00 3.02
3174 4864 3.904800 TGGACGATCAAATAAGCCTGA 57.095 42.857 0.00 0.00 0.00 3.86
3175 4865 3.941483 ACTTGGACGATCAAATAAGCCTG 59.059 43.478 0.00 0.00 0.00 4.85
3195 4885 4.586841 CCAGATCCGGAGAAAGATAAGACT 59.413 45.833 11.34 0.00 0.00 3.24
3219 4909 0.036010 AAAGGAGGCACATCTCGTGG 60.036 55.000 0.00 0.00 46.45 4.94
3224 4914 0.610232 GGCACAAAGGAGGCACATCT 60.610 55.000 0.00 0.00 0.00 2.90
3226 4916 0.698238 TAGGCACAAAGGAGGCACAT 59.302 50.000 0.00 0.00 32.54 3.21
3227 4917 0.698238 ATAGGCACAAAGGAGGCACA 59.302 50.000 0.00 0.00 32.54 4.57
3228 4918 1.383523 GATAGGCACAAAGGAGGCAC 58.616 55.000 0.00 0.00 32.54 5.01
3273 4969 5.225899 TCAACGATTCAGATCAAATGCAG 57.774 39.130 0.00 0.00 32.33 4.41
3291 4987 1.273455 CGTTCGACGTCCACCTCAAC 61.273 60.000 10.58 2.98 36.74 3.18
3348 5045 2.124903 CTAAGTGGTAACTATGCGGCG 58.875 52.381 0.51 0.51 34.77 6.46
3579 5297 6.558771 ACACAAAAAGATTGATCATGTCGA 57.441 33.333 0.00 0.00 0.00 4.20
3608 5327 2.821969 CAGGCCATAACTGCAGACTTTT 59.178 45.455 23.35 6.63 0.00 2.27
3652 5371 2.650116 AACAGCGACGATGGAGCCT 61.650 57.895 18.40 0.00 0.00 4.58
3654 5373 1.446099 TCAACAGCGACGATGGAGC 60.446 57.895 18.40 0.00 0.00 4.70
3656 5375 0.032815 TTGTCAACAGCGACGATGGA 59.967 50.000 18.40 2.86 38.84 3.41
3657 5376 1.078709 ATTGTCAACAGCGACGATGG 58.921 50.000 18.40 0.15 38.37 3.51
3658 5377 2.880822 AATTGTCAACAGCGACGATG 57.119 45.000 12.26 12.26 38.78 3.84
3659 5378 2.095768 CCAAATTGTCAACAGCGACGAT 60.096 45.455 0.00 0.00 41.00 3.73
3691 5410 2.279741 TGTAATACGACGGCGACTACT 58.720 47.619 22.49 0.00 41.64 2.57
3692 5411 2.030946 ACTGTAATACGACGGCGACTAC 59.969 50.000 22.49 15.86 41.64 2.73
3693 5412 2.279741 ACTGTAATACGACGGCGACTA 58.720 47.619 22.49 0.00 41.64 2.59
3694 5413 1.089920 ACTGTAATACGACGGCGACT 58.910 50.000 22.49 2.78 41.64 4.18
3695 5414 2.223021 TGTACTGTAATACGACGGCGAC 60.223 50.000 22.49 5.15 41.64 5.19
3696 5415 2.006169 TGTACTGTAATACGACGGCGA 58.994 47.619 22.49 0.00 41.64 5.54
3698 5417 3.411415 AGTGTACTGTAATACGACGGC 57.589 47.619 0.00 0.00 0.00 5.68
3716 5442 1.931172 GACACACGCGCCAATAATAGT 59.069 47.619 5.73 0.00 0.00 2.12
3726 5452 4.374702 CCTGCTTGACACACGCGC 62.375 66.667 5.73 0.00 31.06 6.86
3728 5454 4.374702 CGCCTGCTTGACACACGC 62.375 66.667 0.00 0.00 0.00 5.34
3823 6753 4.980903 CAAACACCGTGCAGCCGC 62.981 66.667 0.00 0.00 39.24 6.53
3824 6754 3.240606 CTCAAACACCGTGCAGCCG 62.241 63.158 0.00 0.00 0.00 5.52
3825 6755 2.639286 CTCAAACACCGTGCAGCC 59.361 61.111 0.00 0.00 0.00 4.85
3826 6756 2.050985 GCTCAAACACCGTGCAGC 60.051 61.111 0.00 0.00 0.00 5.25
3827 6757 1.159713 TCTGCTCAAACACCGTGCAG 61.160 55.000 6.91 6.91 46.98 4.41
3828 6758 1.153269 TCTGCTCAAACACCGTGCA 60.153 52.632 0.00 0.00 0.00 4.57
3829 6759 1.571460 CTCTGCTCAAACACCGTGC 59.429 57.895 0.00 0.00 0.00 5.34
3830 6760 0.249868 TCCTCTGCTCAAACACCGTG 60.250 55.000 0.00 0.00 0.00 4.94
3831 6761 0.468226 TTCCTCTGCTCAAACACCGT 59.532 50.000 0.00 0.00 0.00 4.83
3832 6762 0.868406 GTTCCTCTGCTCAAACACCG 59.132 55.000 0.00 0.00 0.00 4.94
3833 6763 1.967319 TGTTCCTCTGCTCAAACACC 58.033 50.000 0.00 0.00 0.00 4.16
3834 6764 3.627577 TCTTTGTTCCTCTGCTCAAACAC 59.372 43.478 0.00 0.00 31.76 3.32
3835 6765 3.879295 CTCTTTGTTCCTCTGCTCAAACA 59.121 43.478 0.00 0.00 0.00 2.83
3836 6766 4.130118 TCTCTTTGTTCCTCTGCTCAAAC 58.870 43.478 0.00 0.00 0.00 2.93
3837 6767 4.422073 TCTCTTTGTTCCTCTGCTCAAA 57.578 40.909 0.00 0.00 0.00 2.69
3838 6768 4.573900 GATCTCTTTGTTCCTCTGCTCAA 58.426 43.478 0.00 0.00 0.00 3.02
3839 6769 3.367806 CGATCTCTTTGTTCCTCTGCTCA 60.368 47.826 0.00 0.00 0.00 4.26
3840 6770 3.119316 TCGATCTCTTTGTTCCTCTGCTC 60.119 47.826 0.00 0.00 0.00 4.26
3841 6771 2.828520 TCGATCTCTTTGTTCCTCTGCT 59.171 45.455 0.00 0.00 0.00 4.24
3842 6772 3.238108 TCGATCTCTTTGTTCCTCTGC 57.762 47.619 0.00 0.00 0.00 4.26
3843 6773 4.803088 GTCATCGATCTCTTTGTTCCTCTG 59.197 45.833 0.00 0.00 0.00 3.35
3844 6774 4.439426 CGTCATCGATCTCTTTGTTCCTCT 60.439 45.833 0.00 0.00 39.71 3.69
3845 6775 3.794028 CGTCATCGATCTCTTTGTTCCTC 59.206 47.826 0.00 0.00 39.71 3.71
3846 6776 3.193691 ACGTCATCGATCTCTTTGTTCCT 59.806 43.478 0.00 0.00 40.62 3.36
3847 6777 3.304559 CACGTCATCGATCTCTTTGTTCC 59.695 47.826 0.00 0.00 40.62 3.62
3861 6791 2.420022 CCTTGTTCCCATTCACGTCATC 59.580 50.000 0.00 0.00 0.00 2.92
3909 7884 7.023197 ACATTTTGCGTCCAGTATAATAACC 57.977 36.000 0.00 0.00 0.00 2.85
3924 7899 0.109504 CCCACGGGTTACATTTTGCG 60.110 55.000 0.00 0.00 0.00 4.85
4396 9115 4.760047 AGTAGTTGGCCGGCAGCG 62.760 66.667 30.85 0.00 45.17 5.18
4865 9587 4.479993 CTCCCAGGCGGCTCTTGG 62.480 72.222 9.32 8.89 0.00 3.61
4867 9589 2.930562 AACTCCCAGGCGGCTCTT 60.931 61.111 9.32 0.00 0.00 2.85
4868 9590 3.710722 CAACTCCCAGGCGGCTCT 61.711 66.667 9.32 0.00 0.00 4.09
4869 9591 4.785453 CCAACTCCCAGGCGGCTC 62.785 72.222 9.32 0.00 0.00 4.70
4872 9594 3.406595 GATCCCAACTCCCAGGCGG 62.407 68.421 0.00 0.00 0.00 6.13
4873 9595 2.190578 GATCCCAACTCCCAGGCG 59.809 66.667 0.00 0.00 0.00 5.52
4874 9596 1.529309 GAGATCCCAACTCCCAGGC 59.471 63.158 0.00 0.00 0.00 4.85
4875 9597 0.687757 TCGAGATCCCAACTCCCAGG 60.688 60.000 0.00 0.00 0.00 4.45
4876 9598 0.749649 CTCGAGATCCCAACTCCCAG 59.250 60.000 6.58 0.00 0.00 4.45
4909 9635 0.744414 ATACAGCACATGGACGGCAC 60.744 55.000 0.00 0.00 0.00 5.01
4910 9636 0.461870 GATACAGCACATGGACGGCA 60.462 55.000 0.00 0.00 0.00 5.69
4911 9637 0.461870 TGATACAGCACATGGACGGC 60.462 55.000 0.00 0.00 0.00 5.68
4912 9638 2.245159 ATGATACAGCACATGGACGG 57.755 50.000 0.00 0.00 0.00 4.79
4913 9639 3.182372 CGTTATGATACAGCACATGGACG 59.818 47.826 0.00 0.00 34.26 4.79
4914 9640 3.059597 GCGTTATGATACAGCACATGGAC 60.060 47.826 0.00 0.00 0.00 4.02
4915 9641 3.130633 GCGTTATGATACAGCACATGGA 58.869 45.455 0.00 0.00 0.00 3.41
4916 9642 2.871633 TGCGTTATGATACAGCACATGG 59.128 45.455 0.00 0.00 32.43 3.66
4917 9643 4.201802 TGTTGCGTTATGATACAGCACATG 60.202 41.667 1.23 0.00 37.57 3.21
4918 9644 3.938334 TGTTGCGTTATGATACAGCACAT 59.062 39.130 1.23 0.00 37.57 3.21
4919 9645 3.330267 TGTTGCGTTATGATACAGCACA 58.670 40.909 1.23 1.81 37.57 4.57
4944 9670 0.249911 AACCTCGACACTTCCACAGC 60.250 55.000 0.00 0.00 0.00 4.40
4948 9674 0.249868 CAGCAACCTCGACACTTCCA 60.250 55.000 0.00 0.00 0.00 3.53
5038 9764 4.248058 CAAACCTGAGGCCATTTTCATTC 58.752 43.478 5.01 0.00 0.00 2.67
5077 9811 3.949113 GGGCGTTCCTTGGATTACAAATA 59.051 43.478 0.00 0.00 38.91 1.40
5079 9813 2.164338 GGGCGTTCCTTGGATTACAAA 58.836 47.619 0.00 0.00 38.91 2.83
5081 9815 0.391927 CGGGCGTTCCTTGGATTACA 60.392 55.000 0.00 0.00 0.00 2.41
5082 9816 0.392060 ACGGGCGTTCCTTGGATTAC 60.392 55.000 0.00 0.00 0.00 1.89
5084 9818 1.376812 GACGGGCGTTCCTTGGATT 60.377 57.895 0.00 0.00 0.00 3.01
5085 9819 2.267961 GACGGGCGTTCCTTGGAT 59.732 61.111 0.00 0.00 0.00 3.41
5086 9820 3.235481 TGACGGGCGTTCCTTGGA 61.235 61.111 0.00 0.00 0.00 3.53
5087 9821 3.047877 GTGACGGGCGTTCCTTGG 61.048 66.667 0.00 0.00 0.00 3.61
5088 9822 3.047877 GGTGACGGGCGTTCCTTG 61.048 66.667 0.00 0.00 0.00 3.61
5089 9823 2.798148 GATGGTGACGGGCGTTCCTT 62.798 60.000 0.00 0.00 0.00 3.36
5092 9826 3.186047 CGATGGTGACGGGCGTTC 61.186 66.667 0.00 0.00 0.00 3.95
5097 9831 2.509336 GCAGACGATGGTGACGGG 60.509 66.667 0.00 0.00 34.93 5.28
5100 9834 1.225855 TTTGTGCAGACGATGGTGAC 58.774 50.000 0.00 0.00 0.00 3.67
5102 9836 1.069022 CCTTTTGTGCAGACGATGGTG 60.069 52.381 0.00 0.00 0.00 4.17
5103 9837 1.202758 TCCTTTTGTGCAGACGATGGT 60.203 47.619 0.00 0.00 0.00 3.55
5109 9843 2.669364 CATTGCTCCTTTTGTGCAGAC 58.331 47.619 0.00 0.00 38.01 3.51
5155 9891 0.670546 ACGGGCTGATGTGTCGAAAG 60.671 55.000 0.00 0.00 0.00 2.62
5156 9892 0.604073 TACGGGCTGATGTGTCGAAA 59.396 50.000 0.00 0.00 0.00 3.46
5157 9893 0.172578 CTACGGGCTGATGTGTCGAA 59.827 55.000 0.00 0.00 0.00 3.71
5158 9894 1.807226 CTACGGGCTGATGTGTCGA 59.193 57.895 0.00 0.00 0.00 4.20
5159 9895 1.878522 GCTACGGGCTGATGTGTCG 60.879 63.158 0.00 0.00 38.06 4.35
5160 9896 4.110493 GCTACGGGCTGATGTGTC 57.890 61.111 0.00 0.00 38.06 3.67
5169 9905 1.574134 TACGCAATTAAGCTACGGGC 58.426 50.000 0.00 0.00 42.19 6.13
5170 9906 3.386486 TCATACGCAATTAAGCTACGGG 58.614 45.455 0.00 0.00 0.00 5.28
5171 9907 4.049186 ACTCATACGCAATTAAGCTACGG 58.951 43.478 0.00 0.00 0.00 4.02
5172 9908 5.342525 CCTACTCATACGCAATTAAGCTACG 59.657 44.000 0.00 0.00 0.00 3.51
5173 9909 6.214399 ACCTACTCATACGCAATTAAGCTAC 58.786 40.000 0.00 0.00 0.00 3.58
5174 9910 6.401047 ACCTACTCATACGCAATTAAGCTA 57.599 37.500 0.00 0.00 0.00 3.32
5175 9911 5.277857 ACCTACTCATACGCAATTAAGCT 57.722 39.130 0.00 0.00 0.00 3.74
5176 9912 5.986004 AACCTACTCATACGCAATTAAGC 57.014 39.130 0.00 0.00 0.00 3.09
5177 9913 7.223971 TGCTAAACCTACTCATACGCAATTAAG 59.776 37.037 0.00 0.00 0.00 1.85
5178 9914 7.042950 TGCTAAACCTACTCATACGCAATTAA 58.957 34.615 0.00 0.00 0.00 1.40
5179 9915 6.575267 TGCTAAACCTACTCATACGCAATTA 58.425 36.000 0.00 0.00 0.00 1.40
5180 9916 5.424757 TGCTAAACCTACTCATACGCAATT 58.575 37.500 0.00 0.00 0.00 2.32
5181 9917 5.018539 TGCTAAACCTACTCATACGCAAT 57.981 39.130 0.00 0.00 0.00 3.56
5182 9918 4.459390 TGCTAAACCTACTCATACGCAA 57.541 40.909 0.00 0.00 0.00 4.85
5183 9919 4.665833 ATGCTAAACCTACTCATACGCA 57.334 40.909 0.00 0.00 0.00 5.24
5184 9920 5.753921 AGAAATGCTAAACCTACTCATACGC 59.246 40.000 0.00 0.00 0.00 4.42
5271 10007 4.133078 ACTAAGCATGCTATTTGCCTCTC 58.867 43.478 23.00 0.00 41.06 3.20
5273 10009 4.336433 TGAACTAAGCATGCTATTTGCCTC 59.664 41.667 23.00 11.65 41.06 4.70
5275 10011 4.637483 TGAACTAAGCATGCTATTTGCC 57.363 40.909 23.00 9.57 41.06 4.52
5276 10012 5.585390 ACATGAACTAAGCATGCTATTTGC 58.415 37.500 23.00 11.45 45.32 3.68
5300 10036 6.925165 CCTTTACATTCTTTGTCAGCATGTTT 59.075 34.615 0.00 0.00 36.04 2.83
5328 10064 2.348660 ACGAAGTAGAGAGTGAGACGG 58.651 52.381 0.00 0.00 41.94 4.79
5350 10086 5.843673 TGCTATTCACTCTAGAGAGGTTG 57.156 43.478 26.57 13.67 46.13 3.77
5472 10210 0.037975 TCTTAACCGTTCGGCCACTC 60.038 55.000 11.32 0.00 0.00 3.51
5589 10327 1.295423 CGTTTGACCTGGTCGGGAT 59.705 57.895 21.15 0.00 34.95 3.85
5908 10651 1.201181 CTCGCTGCTCTGTACTCAAGT 59.799 52.381 0.00 0.00 0.00 3.16
5945 10688 2.596631 GGCCGGATCTGCATGCAT 60.597 61.111 22.97 7.28 0.00 3.96


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.