Multiple sequence alignment - TraesCS5A01G222600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G222600 chr5A 100.000 2339 0 0 1 2339 438771583 438773921 0.000000e+00 4320
1 TraesCS5A01G222600 chr5A 97.538 325 6 2 1 325 211559998 211559676 2.630000e-154 555
2 TraesCS5A01G222600 chr2B 94.518 1058 54 3 311 1364 793363271 793364328 0.000000e+00 1629
3 TraesCS5A01G222600 chr2B 94.068 1062 56 6 311 1367 390803221 390802162 0.000000e+00 1605
4 TraesCS5A01G222600 chr5D 94.513 1057 54 1 311 1363 383586285 383587341 0.000000e+00 1628
5 TraesCS5A01G222600 chr5D 89.154 461 38 6 1880 2339 337325715 337326164 4.360000e-157 564
6 TraesCS5A01G222600 chr5D 91.852 270 13 7 1548 1815 337325453 337325715 3.670000e-98 368
7 TraesCS5A01G222600 chr5B 94.423 1058 55 3 311 1364 59780653 59779596 0.000000e+00 1624
8 TraesCS5A01G222600 chr5B 88.445 476 15 10 1366 1808 396044064 396044532 2.640000e-149 538
9 TraesCS5A01G222600 chr5B 90.220 409 32 3 1880 2288 396044542 396044942 5.720000e-146 527
10 TraesCS5A01G222600 chr1A 94.413 1056 55 3 311 1362 213935979 213937034 0.000000e+00 1620
11 TraesCS5A01G222600 chr1A 98.722 313 4 0 1 313 484304094 484303782 7.300000e-155 556
12 TraesCS5A01G222600 chr1A 99.032 310 3 0 1 310 520062463 520062154 7.300000e-155 556
13 TraesCS5A01G222600 chr1A 99.029 309 3 0 1 309 369075189 369075497 2.630000e-154 555
14 TraesCS5A01G222600 chr3B 94.329 1058 56 3 311 1364 161678539 161677482 0.000000e+00 1618
15 TraesCS5A01G222600 chr6D 94.234 1058 55 5 311 1364 338919979 338921034 0.000000e+00 1611
16 TraesCS5A01G222600 chr4B 93.951 1058 60 3 311 1364 613149157 613150214 0.000000e+00 1596
17 TraesCS5A01G222600 chr2D 93.945 1057 60 3 311 1363 308678998 308677942 0.000000e+00 1594
18 TraesCS5A01G222600 chr4A 99.355 310 2 0 1 310 638832129 638832438 1.570000e-156 562
19 TraesCS5A01G222600 chr4A 98.119 319 5 1 1 319 189541192 189541509 2.630000e-154 555
20 TraesCS5A01G222600 chr2A 99.032 310 3 0 1 310 293928823 293929132 7.300000e-155 556
21 TraesCS5A01G222600 chr6A 99.029 309 3 0 1 309 425229797 425229489 2.630000e-154 555
22 TraesCS5A01G222600 chr6A 99.029 309 3 0 1 309 532320896 532320588 2.630000e-154 555


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G222600 chr5A 438771583 438773921 2338 False 4320.0 4320 100.0000 1 2339 1 chr5A.!!$F1 2338
1 TraesCS5A01G222600 chr2B 793363271 793364328 1057 False 1629.0 1629 94.5180 311 1364 1 chr2B.!!$F1 1053
2 TraesCS5A01G222600 chr2B 390802162 390803221 1059 True 1605.0 1605 94.0680 311 1367 1 chr2B.!!$R1 1056
3 TraesCS5A01G222600 chr5D 383586285 383587341 1056 False 1628.0 1628 94.5130 311 1363 1 chr5D.!!$F1 1052
4 TraesCS5A01G222600 chr5D 337325453 337326164 711 False 466.0 564 90.5030 1548 2339 2 chr5D.!!$F2 791
5 TraesCS5A01G222600 chr5B 59779596 59780653 1057 True 1624.0 1624 94.4230 311 1364 1 chr5B.!!$R1 1053
6 TraesCS5A01G222600 chr5B 396044064 396044942 878 False 532.5 538 89.3325 1366 2288 2 chr5B.!!$F1 922
7 TraesCS5A01G222600 chr1A 213935979 213937034 1055 False 1620.0 1620 94.4130 311 1362 1 chr1A.!!$F1 1051
8 TraesCS5A01G222600 chr3B 161677482 161678539 1057 True 1618.0 1618 94.3290 311 1364 1 chr3B.!!$R1 1053
9 TraesCS5A01G222600 chr6D 338919979 338921034 1055 False 1611.0 1611 94.2340 311 1364 1 chr6D.!!$F1 1053
10 TraesCS5A01G222600 chr4B 613149157 613150214 1057 False 1596.0 1596 93.9510 311 1364 1 chr4B.!!$F1 1053
11 TraesCS5A01G222600 chr2D 308677942 308678998 1056 True 1594.0 1594 93.9450 311 1363 1 chr2D.!!$R1 1052

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
346 347 0.619255 ATGGGATGGGACGTACCACA 60.619 55.0 25.2 16.97 44.72 4.17 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1844 1880 0.322008 GCACTTACCTTCTGCTGCCT 60.322 55.0 0.0 0.0 0.0 4.75 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
23 24 6.540323 GCAATAGCAACAAACTAAACGATC 57.460 37.500 0.00 0.00 41.58 3.69
24 25 6.083630 GCAATAGCAACAAACTAAACGATCA 58.916 36.000 0.00 0.00 41.58 2.92
25 26 6.580791 GCAATAGCAACAAACTAAACGATCAA 59.419 34.615 0.00 0.00 41.58 2.57
26 27 7.201266 GCAATAGCAACAAACTAAACGATCAAG 60.201 37.037 0.00 0.00 41.58 3.02
27 28 5.751243 AGCAACAAACTAAACGATCAAGT 57.249 34.783 0.00 0.00 0.00 3.16
28 29 5.510671 AGCAACAAACTAAACGATCAAGTG 58.489 37.500 0.00 0.00 0.00 3.16
29 30 4.146443 GCAACAAACTAAACGATCAAGTGC 59.854 41.667 0.00 0.00 0.00 4.40
30 31 5.510671 CAACAAACTAAACGATCAAGTGCT 58.489 37.500 0.00 0.00 0.00 4.40
31 32 6.655062 CAACAAACTAAACGATCAAGTGCTA 58.345 36.000 0.00 0.00 0.00 3.49
32 33 6.854496 ACAAACTAAACGATCAAGTGCTAA 57.146 33.333 0.00 0.00 0.00 3.09
33 34 6.888430 ACAAACTAAACGATCAAGTGCTAAG 58.112 36.000 0.00 0.00 0.00 2.18
34 35 5.532025 AACTAAACGATCAAGTGCTAAGC 57.468 39.130 0.00 0.00 0.00 3.09
35 36 4.822026 ACTAAACGATCAAGTGCTAAGCT 58.178 39.130 0.00 0.00 0.00 3.74
36 37 5.962433 ACTAAACGATCAAGTGCTAAGCTA 58.038 37.500 0.00 0.00 0.00 3.32
37 38 6.395629 ACTAAACGATCAAGTGCTAAGCTAA 58.604 36.000 0.00 0.00 0.00 3.09
38 39 7.042335 ACTAAACGATCAAGTGCTAAGCTAAT 58.958 34.615 0.00 0.00 0.00 1.73
39 40 5.725110 AACGATCAAGTGCTAAGCTAATG 57.275 39.130 0.00 0.00 0.00 1.90
40 41 4.122776 ACGATCAAGTGCTAAGCTAATGG 58.877 43.478 0.00 0.00 0.00 3.16
41 42 4.141937 ACGATCAAGTGCTAAGCTAATGGA 60.142 41.667 0.00 0.00 0.00 3.41
42 43 4.811024 CGATCAAGTGCTAAGCTAATGGAA 59.189 41.667 0.00 0.00 0.00 3.53
43 44 5.468072 CGATCAAGTGCTAAGCTAATGGAAT 59.532 40.000 0.00 0.00 0.00 3.01
44 45 6.565435 CGATCAAGTGCTAAGCTAATGGAATG 60.565 42.308 0.00 0.00 0.00 2.67
45 46 4.883585 TCAAGTGCTAAGCTAATGGAATGG 59.116 41.667 0.00 0.00 0.00 3.16
46 47 3.825328 AGTGCTAAGCTAATGGAATGGG 58.175 45.455 0.00 0.00 0.00 4.00
47 48 3.203040 AGTGCTAAGCTAATGGAATGGGT 59.797 43.478 0.00 0.00 0.00 4.51
48 49 3.565902 GTGCTAAGCTAATGGAATGGGTC 59.434 47.826 0.00 0.00 0.00 4.46
49 50 3.201930 TGCTAAGCTAATGGAATGGGTCA 59.798 43.478 0.00 0.00 0.00 4.02
50 51 4.207165 GCTAAGCTAATGGAATGGGTCAA 58.793 43.478 0.00 0.00 0.00 3.18
51 52 4.276926 GCTAAGCTAATGGAATGGGTCAAG 59.723 45.833 0.00 0.00 0.00 3.02
52 53 4.322057 AAGCTAATGGAATGGGTCAAGT 57.678 40.909 0.00 0.00 0.00 3.16
53 54 3.891049 AGCTAATGGAATGGGTCAAGTC 58.109 45.455 0.00 0.00 0.00 3.01
54 55 3.266772 AGCTAATGGAATGGGTCAAGTCA 59.733 43.478 0.00 0.00 0.00 3.41
55 56 4.016444 GCTAATGGAATGGGTCAAGTCAA 58.984 43.478 0.00 0.00 0.00 3.18
56 57 4.646492 GCTAATGGAATGGGTCAAGTCAAT 59.354 41.667 0.00 0.00 0.00 2.57
57 58 5.221126 GCTAATGGAATGGGTCAAGTCAATC 60.221 44.000 0.00 0.00 0.00 2.67
58 59 3.805066 TGGAATGGGTCAAGTCAATCA 57.195 42.857 0.00 0.00 0.00 2.57
59 60 3.420893 TGGAATGGGTCAAGTCAATCAC 58.579 45.455 0.00 0.00 0.00 3.06
60 61 3.181435 TGGAATGGGTCAAGTCAATCACA 60.181 43.478 0.00 0.00 0.00 3.58
61 62 4.019174 GGAATGGGTCAAGTCAATCACAT 58.981 43.478 0.00 0.00 0.00 3.21
62 63 4.096984 GGAATGGGTCAAGTCAATCACATC 59.903 45.833 0.00 0.00 0.00 3.06
63 64 3.786368 TGGGTCAAGTCAATCACATCA 57.214 42.857 0.00 0.00 0.00 3.07
64 65 4.305539 TGGGTCAAGTCAATCACATCAT 57.694 40.909 0.00 0.00 0.00 2.45
65 66 4.665451 TGGGTCAAGTCAATCACATCATT 58.335 39.130 0.00 0.00 0.00 2.57
66 67 4.701651 TGGGTCAAGTCAATCACATCATTC 59.298 41.667 0.00 0.00 0.00 2.67
67 68 4.946157 GGGTCAAGTCAATCACATCATTCT 59.054 41.667 0.00 0.00 0.00 2.40
68 69 5.065731 GGGTCAAGTCAATCACATCATTCTC 59.934 44.000 0.00 0.00 0.00 2.87
69 70 5.065731 GGTCAAGTCAATCACATCATTCTCC 59.934 44.000 0.00 0.00 0.00 3.71
70 71 5.879223 GTCAAGTCAATCACATCATTCTCCT 59.121 40.000 0.00 0.00 0.00 3.69
71 72 7.044181 GTCAAGTCAATCACATCATTCTCCTA 58.956 38.462 0.00 0.00 0.00 2.94
72 73 7.550551 GTCAAGTCAATCACATCATTCTCCTAA 59.449 37.037 0.00 0.00 0.00 2.69
73 74 8.270030 TCAAGTCAATCACATCATTCTCCTAAT 58.730 33.333 0.00 0.00 0.00 1.73
74 75 8.343366 CAAGTCAATCACATCATTCTCCTAATG 58.657 37.037 0.00 0.00 0.00 1.90
75 76 7.799081 AGTCAATCACATCATTCTCCTAATGA 58.201 34.615 3.13 3.13 40.50 2.57
76 77 8.438373 AGTCAATCACATCATTCTCCTAATGAT 58.562 33.333 7.28 7.28 45.40 2.45
84 85 6.119240 TCATTCTCCTAATGATGTGATCCC 57.881 41.667 0.00 0.00 32.21 3.85
85 86 4.607293 TTCTCCTAATGATGTGATCCCG 57.393 45.455 0.00 0.00 0.00 5.14
86 87 3.576861 TCTCCTAATGATGTGATCCCGT 58.423 45.455 0.00 0.00 0.00 5.28
87 88 3.967326 TCTCCTAATGATGTGATCCCGTT 59.033 43.478 0.00 0.00 0.00 4.44
88 89 5.144832 TCTCCTAATGATGTGATCCCGTTA 58.855 41.667 0.00 0.00 0.00 3.18
89 90 5.600898 TCTCCTAATGATGTGATCCCGTTAA 59.399 40.000 0.00 0.00 0.00 2.01
90 91 6.270000 TCTCCTAATGATGTGATCCCGTTAAT 59.730 38.462 0.00 0.00 0.00 1.40
91 92 6.464222 TCCTAATGATGTGATCCCGTTAATC 58.536 40.000 0.00 0.00 0.00 1.75
92 93 6.042666 TCCTAATGATGTGATCCCGTTAATCA 59.957 38.462 0.00 0.00 0.00 2.57
93 94 6.710295 CCTAATGATGTGATCCCGTTAATCAA 59.290 38.462 0.00 0.00 35.04 2.57
94 95 7.228507 CCTAATGATGTGATCCCGTTAATCAAA 59.771 37.037 0.00 0.00 35.04 2.69
95 96 7.587037 AATGATGTGATCCCGTTAATCAAAT 57.413 32.000 0.00 0.00 34.46 2.32
96 97 6.375945 TGATGTGATCCCGTTAATCAAATG 57.624 37.500 0.00 0.00 32.39 2.32
97 98 6.118852 TGATGTGATCCCGTTAATCAAATGA 58.881 36.000 0.00 0.00 32.39 2.57
98 99 5.811399 TGTGATCCCGTTAATCAAATGAC 57.189 39.130 0.00 0.00 35.04 3.06
99 100 5.249420 TGTGATCCCGTTAATCAAATGACA 58.751 37.500 0.00 0.00 35.04 3.58
100 101 5.707764 TGTGATCCCGTTAATCAAATGACAA 59.292 36.000 0.00 0.00 35.04 3.18
101 102 6.027749 GTGATCCCGTTAATCAAATGACAAC 58.972 40.000 0.00 0.00 35.04 3.32
102 103 5.943416 TGATCCCGTTAATCAAATGACAACT 59.057 36.000 0.00 0.00 30.37 3.16
103 104 5.873179 TCCCGTTAATCAAATGACAACTC 57.127 39.130 7.65 0.00 0.00 3.01
104 105 5.309638 TCCCGTTAATCAAATGACAACTCA 58.690 37.500 7.65 0.00 0.00 3.41
105 106 5.943416 TCCCGTTAATCAAATGACAACTCAT 59.057 36.000 7.65 0.00 38.94 2.90
106 107 6.029607 CCCGTTAATCAAATGACAACTCATG 58.970 40.000 7.65 0.00 37.20 3.07
120 121 6.620877 ACAACTCATGTCTATGGTTAGGAA 57.379 37.500 0.00 0.00 37.96 3.36
121 122 7.016153 ACAACTCATGTCTATGGTTAGGAAA 57.984 36.000 0.00 0.00 37.96 3.13
122 123 6.879458 ACAACTCATGTCTATGGTTAGGAAAC 59.121 38.462 0.00 0.00 37.96 2.78
123 124 6.620877 ACTCATGTCTATGGTTAGGAAACA 57.379 37.500 0.00 0.00 37.34 2.83
124 125 7.200434 ACTCATGTCTATGGTTAGGAAACAT 57.800 36.000 0.00 0.00 37.34 2.71
125 126 8.319057 ACTCATGTCTATGGTTAGGAAACATA 57.681 34.615 0.00 0.00 37.34 2.29
126 127 8.768397 ACTCATGTCTATGGTTAGGAAACATAA 58.232 33.333 0.00 0.00 37.34 1.90
127 128 8.958119 TCATGTCTATGGTTAGGAAACATAAC 57.042 34.615 0.00 0.00 37.34 1.89
142 143 8.458843 AGGAAACATAACCATCTTTGATTAACG 58.541 33.333 0.00 0.00 0.00 3.18
143 144 8.455682 GGAAACATAACCATCTTTGATTAACGA 58.544 33.333 0.00 0.00 0.00 3.85
144 145 9.490663 GAAACATAACCATCTTTGATTAACGAG 57.509 33.333 0.00 0.00 0.00 4.18
145 146 7.016361 ACATAACCATCTTTGATTAACGAGC 57.984 36.000 0.00 0.00 0.00 5.03
146 147 6.823689 ACATAACCATCTTTGATTAACGAGCT 59.176 34.615 0.00 0.00 0.00 4.09
147 148 7.985184 ACATAACCATCTTTGATTAACGAGCTA 59.015 33.333 0.00 0.00 0.00 3.32
148 149 6.910536 AACCATCTTTGATTAACGAGCTAG 57.089 37.500 0.00 0.00 0.00 3.42
149 150 5.978814 ACCATCTTTGATTAACGAGCTAGT 58.021 37.500 0.00 0.00 0.00 2.57
150 151 6.043411 ACCATCTTTGATTAACGAGCTAGTC 58.957 40.000 0.00 0.00 0.00 2.59
151 152 6.042777 CCATCTTTGATTAACGAGCTAGTCA 58.957 40.000 0.00 0.00 0.00 3.41
152 153 6.535150 CCATCTTTGATTAACGAGCTAGTCAA 59.465 38.462 0.00 0.00 0.00 3.18
153 154 7.254252 CCATCTTTGATTAACGAGCTAGTCAAG 60.254 40.741 0.00 0.00 31.56 3.02
154 155 6.688578 TCTTTGATTAACGAGCTAGTCAAGT 58.311 36.000 0.00 0.00 31.56 3.16
155 156 7.823665 TCTTTGATTAACGAGCTAGTCAAGTA 58.176 34.615 0.00 0.00 31.56 2.24
156 157 7.968956 TCTTTGATTAACGAGCTAGTCAAGTAG 59.031 37.037 0.00 0.00 31.56 2.57
157 158 6.997239 TGATTAACGAGCTAGTCAAGTAGA 57.003 37.500 0.00 0.00 0.00 2.59
158 159 7.017498 TGATTAACGAGCTAGTCAAGTAGAG 57.983 40.000 0.00 0.00 0.00 2.43
159 160 5.814764 TTAACGAGCTAGTCAAGTAGAGG 57.185 43.478 0.00 0.00 0.00 3.69
160 161 2.018515 ACGAGCTAGTCAAGTAGAGGC 58.981 52.381 0.00 0.00 0.00 4.70
161 162 2.017782 CGAGCTAGTCAAGTAGAGGCA 58.982 52.381 0.00 0.00 0.00 4.75
162 163 2.621055 CGAGCTAGTCAAGTAGAGGCAT 59.379 50.000 0.00 0.00 0.00 4.40
163 164 3.815962 CGAGCTAGTCAAGTAGAGGCATA 59.184 47.826 0.00 0.00 0.00 3.14
164 165 4.276183 CGAGCTAGTCAAGTAGAGGCATAA 59.724 45.833 0.00 0.00 0.00 1.90
165 166 5.048364 CGAGCTAGTCAAGTAGAGGCATAAT 60.048 44.000 0.00 0.00 0.00 1.28
166 167 6.149640 CGAGCTAGTCAAGTAGAGGCATAATA 59.850 42.308 0.00 0.00 0.00 0.98
167 168 7.461182 AGCTAGTCAAGTAGAGGCATAATAG 57.539 40.000 0.00 0.00 0.00 1.73
168 169 7.007723 AGCTAGTCAAGTAGAGGCATAATAGT 58.992 38.462 0.00 0.00 0.00 2.12
169 170 7.040062 AGCTAGTCAAGTAGAGGCATAATAGTG 60.040 40.741 0.00 0.00 0.00 2.74
170 171 7.040340 GCTAGTCAAGTAGAGGCATAATAGTGA 60.040 40.741 0.00 0.00 0.00 3.41
171 172 7.045126 AGTCAAGTAGAGGCATAATAGTGAC 57.955 40.000 0.00 0.00 0.00 3.67
172 173 6.836527 AGTCAAGTAGAGGCATAATAGTGACT 59.163 38.462 0.00 0.00 41.12 3.41
180 181 6.552445 AGGCATAATAGTGACTCTCTGTTT 57.448 37.500 0.00 0.00 29.21 2.83
181 182 6.951971 AGGCATAATAGTGACTCTCTGTTTT 58.048 36.000 0.00 0.00 29.21 2.43
182 183 7.398024 AGGCATAATAGTGACTCTCTGTTTTT 58.602 34.615 0.00 0.00 29.21 1.94
183 184 7.335422 AGGCATAATAGTGACTCTCTGTTTTTG 59.665 37.037 0.00 0.00 29.21 2.44
184 185 7.119846 GGCATAATAGTGACTCTCTGTTTTTGT 59.880 37.037 0.00 0.00 0.00 2.83
185 186 8.171840 GCATAATAGTGACTCTCTGTTTTTGTC 58.828 37.037 0.00 0.00 0.00 3.18
186 187 9.429359 CATAATAGTGACTCTCTGTTTTTGTCT 57.571 33.333 0.00 0.00 0.00 3.41
189 190 8.994429 ATAGTGACTCTCTGTTTTTGTCTATG 57.006 34.615 0.00 0.00 0.00 2.23
190 191 6.821388 AGTGACTCTCTGTTTTTGTCTATGT 58.179 36.000 0.00 0.00 0.00 2.29
191 192 7.952671 AGTGACTCTCTGTTTTTGTCTATGTA 58.047 34.615 0.00 0.00 0.00 2.29
192 193 8.589338 AGTGACTCTCTGTTTTTGTCTATGTAT 58.411 33.333 0.00 0.00 0.00 2.29
193 194 9.209175 GTGACTCTCTGTTTTTGTCTATGTATT 57.791 33.333 0.00 0.00 0.00 1.89
194 195 9.424319 TGACTCTCTGTTTTTGTCTATGTATTC 57.576 33.333 0.00 0.00 0.00 1.75
195 196 9.424319 GACTCTCTGTTTTTGTCTATGTATTCA 57.576 33.333 0.00 0.00 0.00 2.57
196 197 9.209175 ACTCTCTGTTTTTGTCTATGTATTCAC 57.791 33.333 0.00 0.00 0.00 3.18
197 198 9.208022 CTCTCTGTTTTTGTCTATGTATTCACA 57.792 33.333 0.00 0.00 39.52 3.58
198 199 8.988934 TCTCTGTTTTTGTCTATGTATTCACAC 58.011 33.333 0.00 0.00 37.54 3.82
199 200 8.669946 TCTGTTTTTGTCTATGTATTCACACA 57.330 30.769 0.00 0.00 37.54 3.72
200 201 9.283768 TCTGTTTTTGTCTATGTATTCACACAT 57.716 29.630 0.00 0.00 41.88 3.21
201 202 9.333497 CTGTTTTTGTCTATGTATTCACACATG 57.667 33.333 0.00 0.00 39.46 3.21
202 203 8.845227 TGTTTTTGTCTATGTATTCACACATGT 58.155 29.630 0.00 0.00 39.46 3.21
214 215 9.980780 TGTATTCACACATGTATTATGTTTTCG 57.019 29.630 0.00 0.00 0.00 3.46
215 216 9.433317 GTATTCACACATGTATTATGTTTTCGG 57.567 33.333 0.00 0.00 0.00 4.30
216 217 7.441890 TTCACACATGTATTATGTTTTCGGT 57.558 32.000 0.00 0.00 0.00 4.69
217 218 7.441890 TCACACATGTATTATGTTTTCGGTT 57.558 32.000 0.00 0.00 0.00 4.44
218 219 8.549338 TCACACATGTATTATGTTTTCGGTTA 57.451 30.769 0.00 0.00 0.00 2.85
219 220 9.000486 TCACACATGTATTATGTTTTCGGTTAA 58.000 29.630 0.00 0.00 0.00 2.01
220 221 9.781834 CACACATGTATTATGTTTTCGGTTAAT 57.218 29.630 0.00 0.00 0.00 1.40
232 233 8.325421 TGTTTTCGGTTAATACAATTCTAGCA 57.675 30.769 0.00 0.00 0.00 3.49
233 234 8.952278 TGTTTTCGGTTAATACAATTCTAGCAT 58.048 29.630 0.00 0.00 0.00 3.79
234 235 9.221775 GTTTTCGGTTAATACAATTCTAGCATG 57.778 33.333 0.00 0.00 0.00 4.06
235 236 8.725405 TTTCGGTTAATACAATTCTAGCATGA 57.275 30.769 0.00 0.00 0.00 3.07
236 237 8.725405 TTCGGTTAATACAATTCTAGCATGAA 57.275 30.769 0.00 0.00 0.00 2.57
237 238 8.902540 TCGGTTAATACAATTCTAGCATGAAT 57.097 30.769 0.00 0.00 38.19 2.57
238 239 9.990360 TCGGTTAATACAATTCTAGCATGAATA 57.010 29.630 0.00 0.00 35.82 1.75
296 297 8.637196 AATAACTTTATTATTGCCTCTAGGGC 57.363 34.615 13.60 13.60 44.71 5.19
308 309 4.982241 CCTCTAGGGCATATTTCCTTCA 57.018 45.455 0.00 0.00 34.75 3.02
309 310 4.904241 CCTCTAGGGCATATTTCCTTCAG 58.096 47.826 0.00 0.00 34.75 3.02
346 347 0.619255 ATGGGATGGGACGTACCACA 60.619 55.000 25.20 16.97 44.72 4.17
363 364 3.290710 CCACAGTCAATCCTATTTGGGG 58.709 50.000 0.00 0.00 36.20 4.96
382 383 1.202348 GGGAGGATTTGGAAACTTGCG 59.798 52.381 0.00 0.00 0.00 4.85
448 449 4.360563 ACACTCTTCTGTGTCGTGTTAAG 58.639 43.478 0.00 0.00 46.90 1.85
479 480 3.144506 AGACATGTGAAAGTCTTGCCTG 58.855 45.455 1.15 0.00 42.12 4.85
543 544 6.161855 TCTGTTGTTTCTATGTGACAGAGT 57.838 37.500 7.14 0.00 38.72 3.24
561 562 6.517605 ACAGAGTAAAAGAAGTCTGGAGAAC 58.482 40.000 12.08 0.00 46.78 3.01
614 619 2.383442 ATAGACTATGCGGGTGAGGT 57.617 50.000 0.00 0.00 0.00 3.85
616 621 1.693627 AGACTATGCGGGTGAGGTAG 58.306 55.000 0.00 0.00 0.00 3.18
672 677 5.801531 AACTATGTATTATGGGCACTCGA 57.198 39.130 0.00 0.00 0.00 4.04
700 705 3.003585 GCGTGACATGATTGCCATATCAA 59.996 43.478 0.00 0.00 40.08 2.57
819 824 2.603075 TTGTTAATGCCTCCTTGCCT 57.397 45.000 0.00 0.00 0.00 4.75
820 825 2.603075 TGTTAATGCCTCCTTGCCTT 57.397 45.000 0.00 0.00 0.00 4.35
857 862 1.237458 GAGGATGGTCTAGCCCCCT 59.763 63.158 11.35 11.35 40.54 4.79
890 895 8.690680 TTTGTTAAACTTAACGTTGATGCTTT 57.309 26.923 11.99 3.76 44.52 3.51
924 929 1.389609 TTCTCAGGGGTACGATCGGC 61.390 60.000 20.98 11.58 0.00 5.54
1026 1031 4.143326 GCTGAAGCTTTGGCGTTAAAATTC 60.143 41.667 0.00 0.00 44.37 2.17
1040 1045 2.038387 AAATTCGGCCTATCGCTTGT 57.962 45.000 0.00 0.00 37.74 3.16
1050 1055 2.076100 CTATCGCTTGTGCAAAGGACA 58.924 47.619 9.63 0.00 39.64 4.02
1095 1100 6.688073 AACTCGGATAATATGGAGGTGATT 57.312 37.500 3.85 0.00 0.00 2.57
1118 1123 1.275291 GACCATGAACGAAGGAGGACA 59.725 52.381 0.00 0.00 0.00 4.02
1416 1422 6.208204 AGCTTGCTCAACTGTGATTTTATCTT 59.792 34.615 0.00 0.00 31.85 2.40
1417 1423 7.391554 AGCTTGCTCAACTGTGATTTTATCTTA 59.608 33.333 0.00 0.00 31.85 2.10
1418 1424 8.023128 GCTTGCTCAACTGTGATTTTATCTTAA 58.977 33.333 0.00 0.00 31.85 1.85
1419 1425 9.897744 CTTGCTCAACTGTGATTTTATCTTAAA 57.102 29.630 0.00 0.00 31.85 1.52
1544 1578 2.171840 TCTTCCGTCCTCCAGAAGAAG 58.828 52.381 0.00 0.00 42.20 2.85
1794 1830 2.625823 CGATTGCGGCACCCAAGTT 61.626 57.895 0.05 0.00 0.00 2.66
1795 1831 1.665442 GATTGCGGCACCCAAGTTT 59.335 52.632 0.05 0.00 0.00 2.66
1796 1832 0.667184 GATTGCGGCACCCAAGTTTG 60.667 55.000 0.05 0.00 0.00 2.93
1801 1837 0.460987 CGGCACCCAAGTTTGCAAAA 60.461 50.000 14.67 0.00 40.75 2.44
1808 1844 3.118298 ACCCAAGTTTGCAAAAGAAGCAT 60.118 39.130 14.67 0.00 42.33 3.79
1811 1847 4.753107 CCAAGTTTGCAAAAGAAGCATGAT 59.247 37.500 14.67 0.00 42.33 2.45
1816 1852 4.970662 TGCAAAAGAAGCATGATACTCC 57.029 40.909 0.00 0.00 37.02 3.85
1817 1853 4.334552 TGCAAAAGAAGCATGATACTCCA 58.665 39.130 0.00 0.00 37.02 3.86
1818 1854 4.397103 TGCAAAAGAAGCATGATACTCCAG 59.603 41.667 0.00 0.00 37.02 3.86
1819 1855 4.732938 GCAAAAGAAGCATGATACTCCAGC 60.733 45.833 0.00 0.00 0.00 4.85
1820 1856 3.920231 AAGAAGCATGATACTCCAGCA 57.080 42.857 0.00 0.00 0.00 4.41
1821 1857 4.434545 AAGAAGCATGATACTCCAGCAT 57.565 40.909 0.00 0.00 32.00 3.79
1822 1858 5.557576 AAGAAGCATGATACTCCAGCATA 57.442 39.130 0.00 0.00 30.27 3.14
1823 1859 5.758790 AGAAGCATGATACTCCAGCATAT 57.241 39.130 0.00 0.00 30.27 1.78
1824 1860 6.124316 AGAAGCATGATACTCCAGCATATT 57.876 37.500 0.00 0.00 30.27 1.28
1825 1861 5.938710 AGAAGCATGATACTCCAGCATATTG 59.061 40.000 0.00 0.00 30.27 1.90
1826 1862 5.494390 AGCATGATACTCCAGCATATTGA 57.506 39.130 0.00 0.00 30.27 2.57
1827 1863 5.243981 AGCATGATACTCCAGCATATTGAC 58.756 41.667 0.00 0.00 30.27 3.18
1828 1864 4.394300 GCATGATACTCCAGCATATTGACC 59.606 45.833 0.00 0.00 30.27 4.02
1829 1865 5.802465 CATGATACTCCAGCATATTGACCT 58.198 41.667 0.00 0.00 30.27 3.85
1830 1866 5.474578 TGATACTCCAGCATATTGACCTC 57.525 43.478 0.00 0.00 0.00 3.85
1831 1867 4.901250 TGATACTCCAGCATATTGACCTCA 59.099 41.667 0.00 0.00 0.00 3.86
1832 1868 3.550437 ACTCCAGCATATTGACCTCAC 57.450 47.619 0.00 0.00 0.00 3.51
1833 1869 3.110705 ACTCCAGCATATTGACCTCACT 58.889 45.455 0.00 0.00 0.00 3.41
1834 1870 4.290093 ACTCCAGCATATTGACCTCACTA 58.710 43.478 0.00 0.00 0.00 2.74
1835 1871 4.904251 ACTCCAGCATATTGACCTCACTAT 59.096 41.667 0.00 0.00 0.00 2.12
1836 1872 5.219343 TCCAGCATATTGACCTCACTATG 57.781 43.478 7.84 7.84 40.39 2.23
1843 1879 7.967890 CATATTGACCTCACTATGCAATACA 57.032 36.000 0.00 0.00 34.34 2.29
1844 1880 8.382030 CATATTGACCTCACTATGCAATACAA 57.618 34.615 0.00 0.00 34.34 2.41
1845 1881 6.932356 ATTGACCTCACTATGCAATACAAG 57.068 37.500 0.00 0.00 0.00 3.16
1846 1882 4.769688 TGACCTCACTATGCAATACAAGG 58.230 43.478 0.00 0.00 0.00 3.61
1847 1883 3.545703 ACCTCACTATGCAATACAAGGC 58.454 45.455 0.00 0.00 0.00 4.35
1848 1884 3.054434 ACCTCACTATGCAATACAAGGCA 60.054 43.478 0.00 0.00 45.23 4.75
1849 1885 3.562973 CCTCACTATGCAATACAAGGCAG 59.437 47.826 0.00 0.00 44.24 4.85
1850 1886 2.945008 TCACTATGCAATACAAGGCAGC 59.055 45.455 0.00 0.00 44.24 5.25
1851 1887 2.684374 CACTATGCAATACAAGGCAGCA 59.316 45.455 0.00 0.00 44.24 4.41
1852 1888 2.947652 ACTATGCAATACAAGGCAGCAG 59.052 45.455 0.00 0.00 44.24 4.24
1853 1889 2.133281 ATGCAATACAAGGCAGCAGA 57.867 45.000 0.00 0.00 44.24 4.26
1854 1890 1.908344 TGCAATACAAGGCAGCAGAA 58.092 45.000 0.00 0.00 34.58 3.02
1855 1891 1.814394 TGCAATACAAGGCAGCAGAAG 59.186 47.619 0.00 0.00 34.58 2.85
1856 1892 1.133790 GCAATACAAGGCAGCAGAAGG 59.866 52.381 0.00 0.00 0.00 3.46
1857 1893 2.440409 CAATACAAGGCAGCAGAAGGT 58.560 47.619 0.00 0.00 0.00 3.50
1858 1894 3.609853 CAATACAAGGCAGCAGAAGGTA 58.390 45.455 0.00 0.00 0.00 3.08
1859 1895 4.009675 CAATACAAGGCAGCAGAAGGTAA 58.990 43.478 0.00 0.00 0.00 2.85
1860 1896 2.191128 ACAAGGCAGCAGAAGGTAAG 57.809 50.000 0.00 0.00 0.00 2.34
1861 1897 1.421646 ACAAGGCAGCAGAAGGTAAGT 59.578 47.619 0.00 0.00 0.00 2.24
1862 1898 1.808945 CAAGGCAGCAGAAGGTAAGTG 59.191 52.381 0.00 0.00 0.00 3.16
1863 1899 0.322008 AGGCAGCAGAAGGTAAGTGC 60.322 55.000 0.00 0.00 37.48 4.40
1864 1900 0.606401 GGCAGCAGAAGGTAAGTGCA 60.606 55.000 0.00 0.00 39.80 4.57
1865 1901 0.801251 GCAGCAGAAGGTAAGTGCAG 59.199 55.000 0.00 0.00 39.80 4.41
1866 1902 1.446907 CAGCAGAAGGTAAGTGCAGG 58.553 55.000 0.00 0.00 39.80 4.85
1867 1903 1.002430 CAGCAGAAGGTAAGTGCAGGA 59.998 52.381 0.00 0.00 39.80 3.86
1868 1904 1.699634 AGCAGAAGGTAAGTGCAGGAA 59.300 47.619 0.00 0.00 39.80 3.36
1869 1905 2.106511 AGCAGAAGGTAAGTGCAGGAAA 59.893 45.455 0.00 0.00 39.80 3.13
1870 1906 2.226674 GCAGAAGGTAAGTGCAGGAAAC 59.773 50.000 0.00 0.00 37.16 2.78
1871 1907 3.476552 CAGAAGGTAAGTGCAGGAAACA 58.523 45.455 0.00 0.00 0.00 2.83
1872 1908 4.074970 CAGAAGGTAAGTGCAGGAAACAT 58.925 43.478 0.00 0.00 0.00 2.71
1873 1909 4.520492 CAGAAGGTAAGTGCAGGAAACATT 59.480 41.667 0.00 0.00 0.00 2.71
1874 1910 5.010012 CAGAAGGTAAGTGCAGGAAACATTT 59.990 40.000 0.00 0.00 0.00 2.32
1875 1911 5.241728 AGAAGGTAAGTGCAGGAAACATTTC 59.758 40.000 0.00 0.00 36.46 2.17
1876 1912 4.469657 AGGTAAGTGCAGGAAACATTTCA 58.530 39.130 6.68 0.00 38.92 2.69
1877 1913 4.520492 AGGTAAGTGCAGGAAACATTTCAG 59.480 41.667 6.68 0.18 38.92 3.02
1878 1914 4.278419 GGTAAGTGCAGGAAACATTTCAGT 59.722 41.667 6.68 0.00 38.92 3.41
1879 1915 5.221244 GGTAAGTGCAGGAAACATTTCAGTT 60.221 40.000 6.68 0.00 38.92 3.16
1883 1919 5.812127 AGTGCAGGAAACATTTCAGTTTTTC 59.188 36.000 6.68 0.00 41.48 2.29
1896 1932 7.749539 TTTCAGTTTTTCTTTTTCGATCACC 57.250 32.000 0.00 0.00 0.00 4.02
1927 1963 0.695347 GGGCTTCTATGGCTATGGCT 59.305 55.000 0.00 0.00 38.73 4.75
1933 1969 3.777106 TCTATGGCTATGGCTTTCAGG 57.223 47.619 0.00 0.00 38.73 3.86
1956 1992 0.806492 CGAGAGGAGCTTTTACGCCC 60.806 60.000 0.00 0.00 0.00 6.13
1958 1994 0.912486 AGAGGAGCTTTTACGCCCAT 59.088 50.000 0.00 0.00 0.00 4.00
1959 1995 1.017387 GAGGAGCTTTTACGCCCATG 58.983 55.000 0.00 0.00 0.00 3.66
1960 1996 0.394352 AGGAGCTTTTACGCCCATGG 60.394 55.000 4.14 4.14 0.00 3.66
1961 1997 1.433471 GAGCTTTTACGCCCATGGC 59.567 57.895 6.09 0.58 46.75 4.40
1970 2006 3.134127 GCCCATGGCGTTCAGACC 61.134 66.667 6.09 0.00 39.62 3.85
1971 2007 2.819595 CCCATGGCGTTCAGACCG 60.820 66.667 6.09 0.00 0.00 4.79
1986 2022 2.111384 AGACCGCCTATCAACTGATGT 58.889 47.619 2.36 0.00 36.05 3.06
2104 2140 9.829507 AAACTGGTGAATTGTTTCAAATGAATA 57.170 25.926 0.00 0.00 43.29 1.75
2105 2141 8.816640 ACTGGTGAATTGTTTCAAATGAATAC 57.183 30.769 0.00 0.28 43.29 1.89
2127 2163 5.376625 ACAGGCTTCAGATTTTTAGACACA 58.623 37.500 0.00 0.00 0.00 3.72
2152 2188 6.458210 ATCTTGGTGATTTCATGGAAACAAC 58.542 36.000 5.10 5.10 36.33 3.32
2170 2206 9.220767 GGAAACAACAAACTCTCTACATAATCT 57.779 33.333 0.00 0.00 0.00 2.40
2189 2225 4.220693 TCTACAATACATGGCAGCAAGT 57.779 40.909 0.00 0.00 0.00 3.16
2217 2253 4.142038 GAGTTACCAAAGCAAGGGAAGAA 58.858 43.478 0.00 0.00 27.00 2.52
2278 2314 5.614308 CACATGAAACATCAGGCTATCCTA 58.386 41.667 0.00 0.00 41.93 2.94
2281 2317 4.645535 TGAAACATCAGGCTATCCTATGC 58.354 43.478 0.00 0.00 41.93 3.14
2291 2327 2.037251 GCTATCCTATGCCGTTTGGAGA 59.963 50.000 0.00 0.00 37.49 3.71
2317 2353 0.523519 GTTTGGAGTAGCTGCTTGCC 59.476 55.000 7.79 4.05 44.23 4.52
2326 2362 0.321919 AGCTGCTTGCCGAAGATGAA 60.322 50.000 0.00 0.00 44.23 2.57
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 6.083630 TGATCGTTTAGTTTGTTGCTATTGC 58.916 36.000 0.00 0.00 40.20 3.56
1 2 7.803189 ACTTGATCGTTTAGTTTGTTGCTATTG 59.197 33.333 0.00 0.00 0.00 1.90
2 3 7.803189 CACTTGATCGTTTAGTTTGTTGCTATT 59.197 33.333 0.00 0.00 0.00 1.73
3 4 7.298122 CACTTGATCGTTTAGTTTGTTGCTAT 58.702 34.615 0.00 0.00 0.00 2.97
4 5 6.655062 CACTTGATCGTTTAGTTTGTTGCTA 58.345 36.000 0.00 0.00 0.00 3.49
5 6 5.510671 CACTTGATCGTTTAGTTTGTTGCT 58.489 37.500 0.00 0.00 0.00 3.91
6 7 4.146443 GCACTTGATCGTTTAGTTTGTTGC 59.854 41.667 0.00 0.00 0.00 4.17
7 8 5.510671 AGCACTTGATCGTTTAGTTTGTTG 58.489 37.500 0.00 0.00 0.00 3.33
8 9 5.751243 AGCACTTGATCGTTTAGTTTGTT 57.249 34.783 0.00 0.00 0.00 2.83
9 10 6.565999 GCTTAGCACTTGATCGTTTAGTTTGT 60.566 38.462 0.00 0.00 0.00 2.83
10 11 5.790495 GCTTAGCACTTGATCGTTTAGTTTG 59.210 40.000 0.00 0.00 0.00 2.93
11 12 5.701290 AGCTTAGCACTTGATCGTTTAGTTT 59.299 36.000 7.07 0.00 0.00 2.66
12 13 5.238583 AGCTTAGCACTTGATCGTTTAGTT 58.761 37.500 7.07 0.00 0.00 2.24
13 14 4.822026 AGCTTAGCACTTGATCGTTTAGT 58.178 39.130 7.07 0.00 0.00 2.24
14 15 6.887376 TTAGCTTAGCACTTGATCGTTTAG 57.113 37.500 7.07 0.00 0.00 1.85
15 16 6.257849 CCATTAGCTTAGCACTTGATCGTTTA 59.742 38.462 7.07 0.00 0.00 2.01
16 17 5.065218 CCATTAGCTTAGCACTTGATCGTTT 59.935 40.000 7.07 0.00 0.00 3.60
17 18 4.572389 CCATTAGCTTAGCACTTGATCGTT 59.428 41.667 7.07 0.00 0.00 3.85
18 19 4.122776 CCATTAGCTTAGCACTTGATCGT 58.877 43.478 7.07 0.00 0.00 3.73
19 20 4.371786 TCCATTAGCTTAGCACTTGATCG 58.628 43.478 7.07 0.00 0.00 3.69
20 21 6.293845 CCATTCCATTAGCTTAGCACTTGATC 60.294 42.308 7.07 0.00 0.00 2.92
21 22 5.533903 CCATTCCATTAGCTTAGCACTTGAT 59.466 40.000 7.07 0.00 0.00 2.57
22 23 4.883585 CCATTCCATTAGCTTAGCACTTGA 59.116 41.667 7.07 0.00 0.00 3.02
23 24 4.037208 CCCATTCCATTAGCTTAGCACTTG 59.963 45.833 7.07 0.08 0.00 3.16
24 25 4.210331 CCCATTCCATTAGCTTAGCACTT 58.790 43.478 7.07 0.00 0.00 3.16
25 26 3.203040 ACCCATTCCATTAGCTTAGCACT 59.797 43.478 7.07 0.00 0.00 4.40
26 27 3.555966 ACCCATTCCATTAGCTTAGCAC 58.444 45.455 7.07 0.00 0.00 4.40
27 28 3.201930 TGACCCATTCCATTAGCTTAGCA 59.798 43.478 7.07 0.00 0.00 3.49
28 29 3.820557 TGACCCATTCCATTAGCTTAGC 58.179 45.455 0.00 0.00 0.00 3.09
29 30 5.440610 ACTTGACCCATTCCATTAGCTTAG 58.559 41.667 0.00 0.00 0.00 2.18
30 31 5.045213 TGACTTGACCCATTCCATTAGCTTA 60.045 40.000 0.00 0.00 0.00 3.09
31 32 4.263905 TGACTTGACCCATTCCATTAGCTT 60.264 41.667 0.00 0.00 0.00 3.74
32 33 3.266772 TGACTTGACCCATTCCATTAGCT 59.733 43.478 0.00 0.00 0.00 3.32
33 34 3.620488 TGACTTGACCCATTCCATTAGC 58.380 45.455 0.00 0.00 0.00 3.09
34 35 5.887598 TGATTGACTTGACCCATTCCATTAG 59.112 40.000 0.00 0.00 0.00 1.73
35 36 5.652014 GTGATTGACTTGACCCATTCCATTA 59.348 40.000 0.00 0.00 0.00 1.90
36 37 4.463891 GTGATTGACTTGACCCATTCCATT 59.536 41.667 0.00 0.00 0.00 3.16
37 38 4.019174 GTGATTGACTTGACCCATTCCAT 58.981 43.478 0.00 0.00 0.00 3.41
38 39 3.181435 TGTGATTGACTTGACCCATTCCA 60.181 43.478 0.00 0.00 0.00 3.53
39 40 3.420893 TGTGATTGACTTGACCCATTCC 58.579 45.455 0.00 0.00 0.00 3.01
40 41 4.701651 TGATGTGATTGACTTGACCCATTC 59.298 41.667 0.00 0.00 0.00 2.67
41 42 4.665451 TGATGTGATTGACTTGACCCATT 58.335 39.130 0.00 0.00 0.00 3.16
42 43 4.305539 TGATGTGATTGACTTGACCCAT 57.694 40.909 0.00 0.00 0.00 4.00
43 44 3.786368 TGATGTGATTGACTTGACCCA 57.214 42.857 0.00 0.00 0.00 4.51
44 45 4.946157 AGAATGATGTGATTGACTTGACCC 59.054 41.667 0.00 0.00 0.00 4.46
45 46 5.065731 GGAGAATGATGTGATTGACTTGACC 59.934 44.000 0.00 0.00 0.00 4.02
46 47 5.879223 AGGAGAATGATGTGATTGACTTGAC 59.121 40.000 0.00 0.00 0.00 3.18
47 48 6.058553 AGGAGAATGATGTGATTGACTTGA 57.941 37.500 0.00 0.00 0.00 3.02
48 49 7.854557 TTAGGAGAATGATGTGATTGACTTG 57.145 36.000 0.00 0.00 0.00 3.16
49 50 8.270030 TCATTAGGAGAATGATGTGATTGACTT 58.730 33.333 0.00 0.00 32.21 3.01
50 51 7.799081 TCATTAGGAGAATGATGTGATTGACT 58.201 34.615 0.00 0.00 32.21 3.41
51 52 8.618702 ATCATTAGGAGAATGATGTGATTGAC 57.381 34.615 11.08 0.00 43.52 3.18
60 61 6.575847 CGGGATCACATCATTAGGAGAATGAT 60.576 42.308 6.90 6.90 45.40 2.45
61 62 5.279657 CGGGATCACATCATTAGGAGAATGA 60.280 44.000 0.00 2.66 40.50 2.57
62 63 4.934001 CGGGATCACATCATTAGGAGAATG 59.066 45.833 0.00 0.00 0.00 2.67
63 64 4.594920 ACGGGATCACATCATTAGGAGAAT 59.405 41.667 0.00 0.00 0.00 2.40
64 65 3.967326 ACGGGATCACATCATTAGGAGAA 59.033 43.478 0.00 0.00 0.00 2.87
65 66 3.576861 ACGGGATCACATCATTAGGAGA 58.423 45.455 0.00 0.00 0.00 3.71
66 67 4.342862 AACGGGATCACATCATTAGGAG 57.657 45.455 0.00 0.00 0.00 3.69
67 68 5.880164 TTAACGGGATCACATCATTAGGA 57.120 39.130 0.00 0.00 0.00 2.94
68 69 6.230472 TGATTAACGGGATCACATCATTAGG 58.770 40.000 0.00 0.00 0.00 2.69
69 70 7.728847 TTGATTAACGGGATCACATCATTAG 57.271 36.000 0.00 0.00 33.51 1.73
70 71 8.567104 CATTTGATTAACGGGATCACATCATTA 58.433 33.333 0.00 0.00 33.51 1.90
71 72 7.285172 TCATTTGATTAACGGGATCACATCATT 59.715 33.333 0.00 0.00 33.51 2.57
72 73 6.772233 TCATTTGATTAACGGGATCACATCAT 59.228 34.615 0.00 0.00 33.51 2.45
73 74 6.038161 GTCATTTGATTAACGGGATCACATCA 59.962 38.462 0.00 0.00 33.51 3.07
74 75 6.038161 TGTCATTTGATTAACGGGATCACATC 59.962 38.462 0.00 0.00 33.51 3.06
75 76 5.885352 TGTCATTTGATTAACGGGATCACAT 59.115 36.000 0.00 0.00 33.51 3.21
76 77 5.249420 TGTCATTTGATTAACGGGATCACA 58.751 37.500 0.00 0.00 33.51 3.58
77 78 5.811399 TGTCATTTGATTAACGGGATCAC 57.189 39.130 0.00 0.00 33.51 3.06
78 79 5.943416 AGTTGTCATTTGATTAACGGGATCA 59.057 36.000 0.00 0.00 32.73 2.92
79 80 6.093495 TGAGTTGTCATTTGATTAACGGGATC 59.907 38.462 0.00 0.00 32.73 3.36
80 81 5.943416 TGAGTTGTCATTTGATTAACGGGAT 59.057 36.000 0.00 0.00 32.73 3.85
81 82 5.309638 TGAGTTGTCATTTGATTAACGGGA 58.690 37.500 0.00 0.00 32.73 5.14
82 83 5.621197 TGAGTTGTCATTTGATTAACGGG 57.379 39.130 0.00 0.00 32.73 5.28
83 84 6.611381 ACATGAGTTGTCATTTGATTAACGG 58.389 36.000 0.00 0.00 40.84 4.44
97 98 6.620877 TTCCTAACCATAGACATGAGTTGT 57.379 37.500 0.00 0.00 42.79 3.32
98 99 6.878923 TGTTTCCTAACCATAGACATGAGTTG 59.121 38.462 0.00 0.00 33.15 3.16
99 100 7.016153 TGTTTCCTAACCATAGACATGAGTT 57.984 36.000 0.00 0.00 33.15 3.01
100 101 6.620877 TGTTTCCTAACCATAGACATGAGT 57.379 37.500 0.00 0.00 33.15 3.41
101 102 9.046296 GTTATGTTTCCTAACCATAGACATGAG 57.954 37.037 0.00 0.00 30.80 2.90
102 103 7.990886 GGTTATGTTTCCTAACCATAGACATGA 59.009 37.037 0.00 0.00 44.95 3.07
103 104 8.154649 GGTTATGTTTCCTAACCATAGACATG 57.845 38.462 7.24 0.00 44.95 3.21
112 113 7.696992 TCAAAGATGGTTATGTTTCCTAACC 57.303 36.000 5.49 5.49 45.53 2.85
116 117 8.458843 CGTTAATCAAAGATGGTTATGTTTCCT 58.541 33.333 0.00 0.00 32.32 3.36
117 118 8.455682 TCGTTAATCAAAGATGGTTATGTTTCC 58.544 33.333 0.00 0.00 32.32 3.13
118 119 9.490663 CTCGTTAATCAAAGATGGTTATGTTTC 57.509 33.333 0.00 0.00 32.32 2.78
119 120 7.968405 GCTCGTTAATCAAAGATGGTTATGTTT 59.032 33.333 0.00 0.00 32.32 2.83
120 121 7.336931 AGCTCGTTAATCAAAGATGGTTATGTT 59.663 33.333 0.00 0.00 32.32 2.71
121 122 6.823689 AGCTCGTTAATCAAAGATGGTTATGT 59.176 34.615 0.00 0.00 32.32 2.29
122 123 7.251704 AGCTCGTTAATCAAAGATGGTTATG 57.748 36.000 0.00 0.00 32.32 1.90
123 124 8.204836 ACTAGCTCGTTAATCAAAGATGGTTAT 58.795 33.333 0.00 0.00 32.32 1.89
124 125 7.553334 ACTAGCTCGTTAATCAAAGATGGTTA 58.447 34.615 0.00 0.00 30.84 2.85
125 126 6.407202 ACTAGCTCGTTAATCAAAGATGGTT 58.593 36.000 0.00 0.00 33.49 3.67
126 127 5.978814 ACTAGCTCGTTAATCAAAGATGGT 58.021 37.500 0.00 0.00 0.00 3.55
127 128 6.042777 TGACTAGCTCGTTAATCAAAGATGG 58.957 40.000 0.00 0.00 0.00 3.51
128 129 7.276658 ACTTGACTAGCTCGTTAATCAAAGATG 59.723 37.037 0.00 0.00 0.00 2.90
129 130 7.324178 ACTTGACTAGCTCGTTAATCAAAGAT 58.676 34.615 0.00 0.00 0.00 2.40
130 131 6.688578 ACTTGACTAGCTCGTTAATCAAAGA 58.311 36.000 0.00 0.00 0.00 2.52
131 132 6.952935 ACTTGACTAGCTCGTTAATCAAAG 57.047 37.500 0.00 0.00 0.00 2.77
132 133 7.823665 TCTACTTGACTAGCTCGTTAATCAAA 58.176 34.615 0.00 0.00 0.00 2.69
133 134 7.387119 TCTACTTGACTAGCTCGTTAATCAA 57.613 36.000 0.00 0.00 0.00 2.57
134 135 6.038382 CCTCTACTTGACTAGCTCGTTAATCA 59.962 42.308 0.00 0.00 0.00 2.57
135 136 6.432107 CCTCTACTTGACTAGCTCGTTAATC 58.568 44.000 0.00 0.00 0.00 1.75
136 137 5.221087 GCCTCTACTTGACTAGCTCGTTAAT 60.221 44.000 0.00 0.00 0.00 1.40
137 138 4.096081 GCCTCTACTTGACTAGCTCGTTAA 59.904 45.833 0.00 0.00 0.00 2.01
138 139 3.626670 GCCTCTACTTGACTAGCTCGTTA 59.373 47.826 0.00 0.00 0.00 3.18
139 140 2.424246 GCCTCTACTTGACTAGCTCGTT 59.576 50.000 0.00 0.00 0.00 3.85
140 141 2.018515 GCCTCTACTTGACTAGCTCGT 58.981 52.381 0.00 0.00 0.00 4.18
141 142 2.017782 TGCCTCTACTTGACTAGCTCG 58.982 52.381 0.00 0.00 0.00 5.03
142 143 5.776173 TTATGCCTCTACTTGACTAGCTC 57.224 43.478 0.00 0.00 0.00 4.09
143 144 7.007723 ACTATTATGCCTCTACTTGACTAGCT 58.992 38.462 0.00 0.00 0.00 3.32
144 145 7.040340 TCACTATTATGCCTCTACTTGACTAGC 60.040 40.741 0.00 0.00 0.00 3.42
145 146 8.293867 GTCACTATTATGCCTCTACTTGACTAG 58.706 40.741 0.00 0.00 0.00 2.57
146 147 7.999545 AGTCACTATTATGCCTCTACTTGACTA 59.000 37.037 0.00 0.00 38.50 2.59
147 148 6.836527 AGTCACTATTATGCCTCTACTTGACT 59.163 38.462 0.00 0.00 36.12 3.41
148 149 7.013846 AGAGTCACTATTATGCCTCTACTTGAC 59.986 40.741 0.00 0.00 0.00 3.18
149 150 7.063593 AGAGTCACTATTATGCCTCTACTTGA 58.936 38.462 0.00 0.00 0.00 3.02
150 151 7.230510 AGAGAGTCACTATTATGCCTCTACTTG 59.769 40.741 0.00 0.00 0.00 3.16
151 152 7.230510 CAGAGAGTCACTATTATGCCTCTACTT 59.769 40.741 0.00 0.00 0.00 2.24
152 153 6.714810 CAGAGAGTCACTATTATGCCTCTACT 59.285 42.308 0.00 0.00 0.00 2.57
153 154 6.488683 ACAGAGAGTCACTATTATGCCTCTAC 59.511 42.308 0.00 0.00 0.00 2.59
154 155 6.606069 ACAGAGAGTCACTATTATGCCTCTA 58.394 40.000 0.00 0.00 0.00 2.43
155 156 5.454062 ACAGAGAGTCACTATTATGCCTCT 58.546 41.667 0.00 0.00 0.00 3.69
156 157 5.782893 ACAGAGAGTCACTATTATGCCTC 57.217 43.478 0.00 0.00 0.00 4.70
157 158 6.552445 AAACAGAGAGTCACTATTATGCCT 57.448 37.500 0.00 0.00 0.00 4.75
158 159 7.119846 ACAAAAACAGAGAGTCACTATTATGCC 59.880 37.037 0.00 0.00 0.00 4.40
159 160 8.034058 ACAAAAACAGAGAGTCACTATTATGC 57.966 34.615 0.00 0.00 0.00 3.14
160 161 9.429359 AGACAAAAACAGAGAGTCACTATTATG 57.571 33.333 0.00 0.00 0.00 1.90
163 164 9.429359 CATAGACAAAAACAGAGAGTCACTATT 57.571 33.333 0.00 0.00 0.00 1.73
164 165 8.589338 ACATAGACAAAAACAGAGAGTCACTAT 58.411 33.333 0.00 0.00 0.00 2.12
165 166 7.952671 ACATAGACAAAAACAGAGAGTCACTA 58.047 34.615 0.00 0.00 0.00 2.74
166 167 6.821388 ACATAGACAAAAACAGAGAGTCACT 58.179 36.000 0.00 0.00 0.00 3.41
167 168 8.764524 ATACATAGACAAAAACAGAGAGTCAC 57.235 34.615 0.00 0.00 0.00 3.67
168 169 9.424319 GAATACATAGACAAAAACAGAGAGTCA 57.576 33.333 0.00 0.00 0.00 3.41
169 170 9.424319 TGAATACATAGACAAAAACAGAGAGTC 57.576 33.333 0.00 0.00 0.00 3.36
170 171 9.209175 GTGAATACATAGACAAAAACAGAGAGT 57.791 33.333 0.00 0.00 0.00 3.24
171 172 9.208022 TGTGAATACATAGACAAAAACAGAGAG 57.792 33.333 0.00 0.00 0.00 3.20
172 173 8.988934 GTGTGAATACATAGACAAAAACAGAGA 58.011 33.333 0.00 0.00 39.39 3.10
173 174 8.773645 TGTGTGAATACATAGACAAAAACAGAG 58.226 33.333 0.00 0.00 39.39 3.35
174 175 8.669946 TGTGTGAATACATAGACAAAAACAGA 57.330 30.769 0.00 0.00 39.39 3.41
175 176 9.333497 CATGTGTGAATACATAGACAAAAACAG 57.667 33.333 0.00 0.00 39.17 3.16
176 177 8.845227 ACATGTGTGAATACATAGACAAAAACA 58.155 29.630 0.00 0.00 39.17 2.83
188 189 9.980780 CGAAAACATAATACATGTGTGAATACA 57.019 29.630 9.11 0.00 34.63 2.29
189 190 9.433317 CCGAAAACATAATACATGTGTGAATAC 57.567 33.333 9.11 0.00 31.80 1.89
190 191 9.168451 ACCGAAAACATAATACATGTGTGAATA 57.832 29.630 9.11 0.00 31.80 1.75
191 192 8.050778 ACCGAAAACATAATACATGTGTGAAT 57.949 30.769 9.11 0.00 31.80 2.57
192 193 7.441890 ACCGAAAACATAATACATGTGTGAA 57.558 32.000 9.11 0.00 31.80 3.18
193 194 7.441890 AACCGAAAACATAATACATGTGTGA 57.558 32.000 9.11 0.00 31.80 3.58
194 195 9.781834 ATTAACCGAAAACATAATACATGTGTG 57.218 29.630 9.11 4.81 31.80 3.82
206 207 8.952278 TGCTAGAATTGTATTAACCGAAAACAT 58.048 29.630 0.00 0.00 0.00 2.71
207 208 8.325421 TGCTAGAATTGTATTAACCGAAAACA 57.675 30.769 0.00 0.00 0.00 2.83
208 209 9.221775 CATGCTAGAATTGTATTAACCGAAAAC 57.778 33.333 0.00 0.00 0.00 2.43
209 210 9.168451 TCATGCTAGAATTGTATTAACCGAAAA 57.832 29.630 0.00 0.00 0.00 2.29
210 211 8.725405 TCATGCTAGAATTGTATTAACCGAAA 57.275 30.769 0.00 0.00 0.00 3.46
211 212 8.725405 TTCATGCTAGAATTGTATTAACCGAA 57.275 30.769 0.00 0.00 0.00 4.30
212 213 8.902540 ATTCATGCTAGAATTGTATTAACCGA 57.097 30.769 0.00 0.00 34.70 4.69
287 288 4.805609 GCTGAAGGAAATATGCCCTAGAGG 60.806 50.000 0.00 0.00 39.47 3.69
288 289 4.202398 TGCTGAAGGAAATATGCCCTAGAG 60.202 45.833 0.00 0.00 31.36 2.43
289 290 3.716353 TGCTGAAGGAAATATGCCCTAGA 59.284 43.478 0.00 0.00 31.36 2.43
290 291 4.090761 TGCTGAAGGAAATATGCCCTAG 57.909 45.455 0.00 0.00 31.36 3.02
291 292 4.079787 ACTTGCTGAAGGAAATATGCCCTA 60.080 41.667 0.00 0.00 32.95 3.53
292 293 3.294214 CTTGCTGAAGGAAATATGCCCT 58.706 45.455 0.00 0.00 0.00 5.19
293 294 3.026694 ACTTGCTGAAGGAAATATGCCC 58.973 45.455 0.00 0.00 32.95 5.36
294 295 4.725790 AACTTGCTGAAGGAAATATGCC 57.274 40.909 0.00 0.00 32.95 4.40
295 296 5.064707 TCGTAACTTGCTGAAGGAAATATGC 59.935 40.000 0.00 0.00 32.95 3.14
296 297 6.092122 TGTCGTAACTTGCTGAAGGAAATATG 59.908 38.462 0.00 0.00 32.95 1.78
297 298 6.170506 TGTCGTAACTTGCTGAAGGAAATAT 58.829 36.000 0.00 0.00 32.95 1.28
298 299 5.543714 TGTCGTAACTTGCTGAAGGAAATA 58.456 37.500 0.00 0.00 32.95 1.40
299 300 4.385825 TGTCGTAACTTGCTGAAGGAAAT 58.614 39.130 0.00 0.00 32.95 2.17
300 301 3.799366 TGTCGTAACTTGCTGAAGGAAA 58.201 40.909 0.00 0.00 32.95 3.13
301 302 3.462483 TGTCGTAACTTGCTGAAGGAA 57.538 42.857 0.00 0.00 32.95 3.36
302 303 3.678056 ATGTCGTAACTTGCTGAAGGA 57.322 42.857 0.00 0.00 32.95 3.36
303 304 3.617263 GGTATGTCGTAACTTGCTGAAGG 59.383 47.826 0.00 0.00 32.95 3.46
304 305 4.242475 TGGTATGTCGTAACTTGCTGAAG 58.758 43.478 0.00 0.00 35.07 3.02
305 306 4.260139 TGGTATGTCGTAACTTGCTGAA 57.740 40.909 0.00 0.00 0.00 3.02
306 307 3.945981 TGGTATGTCGTAACTTGCTGA 57.054 42.857 0.00 0.00 0.00 4.26
307 308 4.201812 CCATTGGTATGTCGTAACTTGCTG 60.202 45.833 0.00 0.00 0.00 4.41
308 309 3.938963 CCATTGGTATGTCGTAACTTGCT 59.061 43.478 0.00 0.00 0.00 3.91
309 310 3.064820 CCCATTGGTATGTCGTAACTTGC 59.935 47.826 1.20 0.00 0.00 4.01
346 347 2.785857 CCTCCCCCAAATAGGATTGACT 59.214 50.000 0.00 0.00 41.22 3.41
363 364 2.636768 CGCAAGTTTCCAAATCCTCC 57.363 50.000 0.00 0.00 0.00 4.30
389 390 9.930693 ACGCCAAATAAATATTTTAACCTTTGA 57.069 25.926 5.91 0.00 33.88 2.69
448 449 8.934507 AGACTTTCACATGTCTATTAGCTAAC 57.065 34.615 8.70 0.00 41.19 2.34
479 480 0.461693 GATGAGCAGGCAGGACACTC 60.462 60.000 0.00 0.00 0.00 3.51
543 544 5.524971 TCGTGTTCTCCAGACTTCTTTTA 57.475 39.130 0.00 0.00 0.00 1.52
649 654 6.169557 TCGAGTGCCCATAATACATAGTTT 57.830 37.500 0.00 0.00 0.00 2.66
672 677 2.598589 GCAATCATGTCACGCACATTT 58.401 42.857 0.00 0.00 43.89 2.32
700 705 0.400815 TCCCACCACAAGTACCAGGT 60.401 55.000 0.00 0.00 33.91 4.00
747 752 5.007430 GGATATCTGTTGTGCATTCTGAGTG 59.993 44.000 2.05 0.00 0.00 3.51
787 792 4.754114 GGCATTAACAAAATTGGCAGTGAA 59.246 37.500 0.00 0.00 0.00 3.18
819 824 4.324563 CCTCCTCTTTTCATGGAAGCCTAA 60.325 45.833 0.00 0.00 0.00 2.69
820 825 3.200825 CCTCCTCTTTTCATGGAAGCCTA 59.799 47.826 0.00 0.00 0.00 3.93
857 862 5.526846 ACGTTAAGTTTAACAAATCCCGTCA 59.473 36.000 13.44 0.00 42.34 4.35
890 895 3.202906 CTGAGAAGGTCGTGGTCAAAAA 58.797 45.455 0.00 0.00 0.00 1.94
924 929 4.627467 CCTTTGTCATCTCTTAAGACCACG 59.373 45.833 0.00 0.00 33.32 4.94
1026 1031 1.643868 TTTGCACAAGCGATAGGCCG 61.644 55.000 0.00 0.00 46.23 6.13
1040 1045 2.811431 CGATTACAACCTGTCCTTTGCA 59.189 45.455 0.00 0.00 0.00 4.08
1095 1100 1.550524 CCTCCTTCGTTCATGGTCTCA 59.449 52.381 0.00 0.00 0.00 3.27
1118 1123 4.473520 CTGCTGCCCCCGACGATT 62.474 66.667 0.00 0.00 0.00 3.34
1242 1247 8.464404 CAATCAGAAATGAAGGAAAATCTAGCA 58.536 33.333 0.00 0.00 0.00 3.49
1364 1369 1.608717 CTCCGCCTTGCTCAGGTACT 61.609 60.000 4.63 0.00 46.07 2.73
1378 1383 2.433318 AAGCTGCTTCGTCTCCGC 60.433 61.111 9.53 0.00 0.00 5.54
1393 1398 9.897744 TTTAAGATAAAATCACAGTTGAGCAAG 57.102 29.630 0.00 0.00 34.35 4.01
1442 1448 6.547510 AGTTATTTGGCTCTCTGAAAACTTGT 59.452 34.615 0.00 0.00 0.00 3.16
1672 1708 4.574828 GCAATCGTTGGTTGGTATCTACAT 59.425 41.667 0.00 0.00 0.00 2.29
1776 1812 2.141122 AAACTTGGGTGCCGCAATCG 62.141 55.000 0.00 0.00 35.84 3.34
1784 1820 2.307934 TCTTTTGCAAACTTGGGTGC 57.692 45.000 12.39 0.00 41.29 5.01
1794 1830 4.766373 TGGAGTATCATGCTTCTTTTGCAA 59.234 37.500 0.00 0.00 44.01 4.08
1795 1831 4.334552 TGGAGTATCATGCTTCTTTTGCA 58.665 39.130 0.00 0.00 44.95 4.08
1796 1832 4.732938 GCTGGAGTATCATGCTTCTTTTGC 60.733 45.833 0.00 0.00 36.25 3.68
1801 1837 5.758790 ATATGCTGGAGTATCATGCTTCT 57.241 39.130 0.00 0.00 36.18 2.85
1808 1844 4.901250 TGAGGTCAATATGCTGGAGTATCA 59.099 41.667 0.00 0.00 36.25 2.15
1811 1847 4.290093 AGTGAGGTCAATATGCTGGAGTA 58.710 43.478 0.00 0.00 0.00 2.59
1820 1856 7.663081 CCTTGTATTGCATAGTGAGGTCAATAT 59.337 37.037 0.00 0.00 37.59 1.28
1821 1857 6.992123 CCTTGTATTGCATAGTGAGGTCAATA 59.008 38.462 0.00 0.00 0.00 1.90
1822 1858 5.824624 CCTTGTATTGCATAGTGAGGTCAAT 59.175 40.000 0.00 0.00 0.00 2.57
1823 1859 5.185454 CCTTGTATTGCATAGTGAGGTCAA 58.815 41.667 0.00 0.00 0.00 3.18
1824 1860 4.769688 CCTTGTATTGCATAGTGAGGTCA 58.230 43.478 0.00 0.00 0.00 4.02
1825 1861 3.561725 GCCTTGTATTGCATAGTGAGGTC 59.438 47.826 0.00 0.00 0.00 3.85
1826 1862 3.054434 TGCCTTGTATTGCATAGTGAGGT 60.054 43.478 0.00 0.00 31.31 3.85
1827 1863 3.544684 TGCCTTGTATTGCATAGTGAGG 58.455 45.455 0.00 0.00 31.31 3.86
1828 1864 3.003068 GCTGCCTTGTATTGCATAGTGAG 59.997 47.826 0.00 0.00 36.79 3.51
1829 1865 2.945008 GCTGCCTTGTATTGCATAGTGA 59.055 45.455 0.00 0.00 36.79 3.41
1830 1866 2.684374 TGCTGCCTTGTATTGCATAGTG 59.316 45.455 0.00 0.00 36.79 2.74
1831 1867 2.947652 CTGCTGCCTTGTATTGCATAGT 59.052 45.455 0.00 0.00 36.79 2.12
1832 1868 3.208594 TCTGCTGCCTTGTATTGCATAG 58.791 45.455 0.00 0.00 36.79 2.23
1833 1869 3.280197 TCTGCTGCCTTGTATTGCATA 57.720 42.857 0.00 0.00 36.79 3.14
1834 1870 2.133281 TCTGCTGCCTTGTATTGCAT 57.867 45.000 0.00 0.00 36.79 3.96
1835 1871 1.814394 CTTCTGCTGCCTTGTATTGCA 59.186 47.619 0.00 0.00 35.86 4.08
1836 1872 1.133790 CCTTCTGCTGCCTTGTATTGC 59.866 52.381 0.00 0.00 0.00 3.56
1837 1873 2.440409 ACCTTCTGCTGCCTTGTATTG 58.560 47.619 0.00 0.00 0.00 1.90
1838 1874 2.887151 ACCTTCTGCTGCCTTGTATT 57.113 45.000 0.00 0.00 0.00 1.89
1839 1875 3.264450 ACTTACCTTCTGCTGCCTTGTAT 59.736 43.478 0.00 0.00 0.00 2.29
1840 1876 2.637872 ACTTACCTTCTGCTGCCTTGTA 59.362 45.455 0.00 0.00 0.00 2.41
1841 1877 1.421646 ACTTACCTTCTGCTGCCTTGT 59.578 47.619 0.00 0.00 0.00 3.16
1842 1878 1.808945 CACTTACCTTCTGCTGCCTTG 59.191 52.381 0.00 0.00 0.00 3.61
1843 1879 1.884067 GCACTTACCTTCTGCTGCCTT 60.884 52.381 0.00 0.00 0.00 4.35
1844 1880 0.322008 GCACTTACCTTCTGCTGCCT 60.322 55.000 0.00 0.00 0.00 4.75
1845 1881 0.606401 TGCACTTACCTTCTGCTGCC 60.606 55.000 0.00 0.00 0.00 4.85
1846 1882 0.801251 CTGCACTTACCTTCTGCTGC 59.199 55.000 0.00 0.00 0.00 5.25
1847 1883 1.002430 TCCTGCACTTACCTTCTGCTG 59.998 52.381 0.00 0.00 0.00 4.41
1848 1884 1.352083 TCCTGCACTTACCTTCTGCT 58.648 50.000 0.00 0.00 0.00 4.24
1849 1885 2.185004 TTCCTGCACTTACCTTCTGC 57.815 50.000 0.00 0.00 0.00 4.26
1850 1886 3.476552 TGTTTCCTGCACTTACCTTCTG 58.523 45.455 0.00 0.00 0.00 3.02
1851 1887 3.857157 TGTTTCCTGCACTTACCTTCT 57.143 42.857 0.00 0.00 0.00 2.85
1852 1888 5.009610 TGAAATGTTTCCTGCACTTACCTTC 59.990 40.000 3.26 0.00 36.36 3.46
1853 1889 4.892934 TGAAATGTTTCCTGCACTTACCTT 59.107 37.500 3.26 0.00 36.36 3.50
1854 1890 4.469657 TGAAATGTTTCCTGCACTTACCT 58.530 39.130 3.26 0.00 36.36 3.08
1855 1891 4.278419 ACTGAAATGTTTCCTGCACTTACC 59.722 41.667 3.26 0.00 36.36 2.85
1856 1892 5.438761 ACTGAAATGTTTCCTGCACTTAC 57.561 39.130 3.26 0.00 36.36 2.34
1857 1893 6.463995 AAACTGAAATGTTTCCTGCACTTA 57.536 33.333 3.26 0.00 35.50 2.24
1858 1894 5.343307 AAACTGAAATGTTTCCTGCACTT 57.657 34.783 3.26 0.00 35.50 3.16
1859 1895 5.343307 AAAACTGAAATGTTTCCTGCACT 57.657 34.783 3.26 0.00 38.98 4.40
1860 1896 5.812127 AGAAAAACTGAAATGTTTCCTGCAC 59.188 36.000 3.26 0.00 38.98 4.57
1861 1897 5.976458 AGAAAAACTGAAATGTTTCCTGCA 58.024 33.333 3.26 0.00 38.98 4.41
1862 1898 6.908870 AAGAAAAACTGAAATGTTTCCTGC 57.091 33.333 3.26 0.00 38.98 4.85
1863 1899 9.759259 GAAAAAGAAAAACTGAAATGTTTCCTG 57.241 29.630 3.26 0.00 38.98 3.86
1864 1900 8.655970 CGAAAAAGAAAAACTGAAATGTTTCCT 58.344 29.630 3.26 0.00 38.98 3.36
1865 1901 8.652463 TCGAAAAAGAAAAACTGAAATGTTTCC 58.348 29.630 3.26 0.00 38.98 3.13
1868 1904 9.364989 TGATCGAAAAAGAAAAACTGAAATGTT 57.635 25.926 0.00 0.00 0.00 2.71
1869 1905 8.807581 GTGATCGAAAAAGAAAAACTGAAATGT 58.192 29.630 0.00 0.00 0.00 2.71
1870 1906 8.268738 GGTGATCGAAAAAGAAAAACTGAAATG 58.731 33.333 0.00 0.00 0.00 2.32
1871 1907 7.167468 CGGTGATCGAAAAAGAAAAACTGAAAT 59.833 33.333 0.00 0.00 42.43 2.17
1872 1908 6.470877 CGGTGATCGAAAAAGAAAAACTGAAA 59.529 34.615 0.00 0.00 42.43 2.69
1873 1909 5.968848 CGGTGATCGAAAAAGAAAAACTGAA 59.031 36.000 0.00 0.00 42.43 3.02
1874 1910 5.507077 CGGTGATCGAAAAAGAAAAACTGA 58.493 37.500 0.00 0.00 42.43 3.41
1875 1911 4.146443 GCGGTGATCGAAAAAGAAAAACTG 59.854 41.667 0.00 0.00 42.43 3.16
1876 1912 4.287720 GCGGTGATCGAAAAAGAAAAACT 58.712 39.130 0.00 0.00 42.43 2.66
1877 1913 3.117346 CGCGGTGATCGAAAAAGAAAAAC 59.883 43.478 0.00 0.00 42.43 2.43
1878 1914 3.242804 ACGCGGTGATCGAAAAAGAAAAA 60.243 39.130 12.47 0.00 42.43 1.94
1879 1915 2.288458 ACGCGGTGATCGAAAAAGAAAA 59.712 40.909 12.47 0.00 42.43 2.29
1883 1919 1.193650 TGAACGCGGTGATCGAAAAAG 59.806 47.619 12.47 0.00 42.43 2.27
1893 1929 2.742372 CCCCTTCTGAACGCGGTG 60.742 66.667 12.47 0.00 0.00 4.94
1896 1932 2.358737 AAGCCCCTTCTGAACGCG 60.359 61.111 3.53 3.53 0.00 6.01
1927 1963 1.990060 CTCCTCTCGGGGCCTGAAA 60.990 63.158 17.43 1.36 35.33 2.69
1961 1997 1.135083 AGTTGATAGGCGGTCTGAACG 60.135 52.381 11.41 11.41 0.00 3.95
1962 1998 2.094182 TCAGTTGATAGGCGGTCTGAAC 60.094 50.000 0.00 0.00 0.00 3.18
1963 1999 2.176045 TCAGTTGATAGGCGGTCTGAA 58.824 47.619 0.00 0.00 0.00 3.02
1964 2000 1.847328 TCAGTTGATAGGCGGTCTGA 58.153 50.000 0.00 0.00 0.00 3.27
1965 2001 2.159043 ACATCAGTTGATAGGCGGTCTG 60.159 50.000 0.00 0.00 32.63 3.51
1966 2002 2.111384 ACATCAGTTGATAGGCGGTCT 58.889 47.619 0.00 0.00 32.63 3.85
1967 2003 2.604046 ACATCAGTTGATAGGCGGTC 57.396 50.000 0.00 0.00 32.63 4.79
1968 2004 3.009723 CAAACATCAGTTGATAGGCGGT 58.990 45.455 0.00 0.00 38.17 5.68
1969 2005 2.223340 GCAAACATCAGTTGATAGGCGG 60.223 50.000 0.00 0.00 38.17 6.13
1970 2006 2.679837 AGCAAACATCAGTTGATAGGCG 59.320 45.455 0.00 0.00 38.17 5.52
1971 2007 4.082571 ACAAGCAAACATCAGTTGATAGGC 60.083 41.667 0.00 0.00 38.17 3.93
1972 2008 5.633830 ACAAGCAAACATCAGTTGATAGG 57.366 39.130 0.00 0.00 38.17 2.57
1973 2009 7.935338 AAAACAAGCAAACATCAGTTGATAG 57.065 32.000 0.00 0.00 38.17 2.08
2104 2140 5.376625 TGTGTCTAAAAATCTGAAGCCTGT 58.623 37.500 0.00 0.00 0.00 4.00
2105 2141 5.947228 TGTGTCTAAAAATCTGAAGCCTG 57.053 39.130 0.00 0.00 0.00 4.85
2158 2194 9.363763 CTGCCATGTATTGTAGATTATGTAGAG 57.636 37.037 0.00 0.00 0.00 2.43
2170 2206 3.443329 CCAACTTGCTGCCATGTATTGTA 59.557 43.478 0.00 0.00 0.00 2.41
2209 2245 1.694696 GTCGCCTATCCATTCTTCCCT 59.305 52.381 0.00 0.00 0.00 4.20
2211 2247 2.484889 GTGTCGCCTATCCATTCTTCC 58.515 52.381 0.00 0.00 0.00 3.46
2217 2253 1.109920 AGCTCGTGTCGCCTATCCAT 61.110 55.000 0.00 0.00 0.00 3.41
2278 2314 0.911769 TCCATCTCTCCAAACGGCAT 59.088 50.000 0.00 0.00 0.00 4.40
2281 2317 2.744202 CAAACTCCATCTCTCCAAACGG 59.256 50.000 0.00 0.00 0.00 4.44
2282 2318 2.744202 CCAAACTCCATCTCTCCAAACG 59.256 50.000 0.00 0.00 0.00 3.60
2291 2327 2.093235 GCAGCTACTCCAAACTCCATCT 60.093 50.000 0.00 0.00 0.00 2.90


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.