Multiple sequence alignment - TraesCS5A01G222500

Loading Multiple Alignment...

Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G222500 chr5A 100.000 6246 0 0 1 6246 438476889 438470644 0.000000e+00 11535.0
1 TraesCS5A01G222500 chr5A 90.000 100 7 2 5487 5583 438471317 438471218 6.570000e-25 126.0
2 TraesCS5A01G222500 chr5A 90.000 100 7 2 5573 5672 438471403 438471307 6.570000e-25 126.0
3 TraesCS5A01G222500 chr5D 93.998 4915 173 47 515 5384 337306235 337301398 0.000000e+00 7330.0
4 TraesCS5A01G222500 chr5D 89.507 629 45 10 5629 6246 337301160 337300542 0.000000e+00 776.0
5 TraesCS5A01G222500 chr5D 90.418 407 16 10 26 411 337306846 337306442 1.200000e-141 514.0
6 TraesCS5A01G222500 chr5B 94.372 3358 127 31 2031 5380 395924760 395921457 0.000000e+00 5097.0
7 TraesCS5A01G222500 chr5B 90.504 1190 47 22 516 1658 395926430 395925260 0.000000e+00 1511.0
8 TraesCS5A01G222500 chr5B 88.942 633 48 8 5629 6246 395921269 395920644 0.000000e+00 761.0
9 TraesCS5A01G222500 chr5B 88.199 483 29 18 25 486 395926975 395926500 9.150000e-153 551.0
10 TraesCS5A01G222500 chr5B 90.977 399 22 7 1642 2037 395925242 395924855 5.550000e-145 525.0
11 TraesCS5A01G222500 chr5B 86.982 169 20 2 1192 1359 680918703 680918870 8.270000e-44 189.0
12 TraesCS5A01G222500 chr1A 86.304 533 73 0 4492 5024 256827136 256827668 1.170000e-161 580.0
13 TraesCS5A01G222500 chr1A 82.102 609 103 5 2038 2643 256824713 256825318 3.340000e-142 516.0
14 TraesCS5A01G222500 chr1A 84.115 384 51 6 3968 4350 256826640 256827014 4.600000e-96 363.0
15 TraesCS5A01G222500 chr1A 77.778 459 76 16 3097 3541 256825586 256826032 6.210000e-65 259.0
16 TraesCS5A01G222500 chr1A 83.721 258 40 2 2740 2996 256825322 256825578 6.260000e-60 243.0
17 TraesCS5A01G222500 chr1D 85.741 533 76 0 4492 5024 202569645 202570177 1.180000e-156 564.0
18 TraesCS5A01G222500 chr1D 84.282 369 53 3 3999 4366 202569173 202569537 7.700000e-94 355.0
19 TraesCS5A01G222500 chr1D 85.271 258 36 2 2740 2996 202567840 202568096 1.340000e-66 265.0
20 TraesCS5A01G222500 chr1D 77.263 453 75 20 3097 3541 202568104 202568536 2.250000e-59 241.0
21 TraesCS5A01G222500 chr1B 85.849 530 75 0 4492 5021 296502128 296502657 1.180000e-156 564.0
22 TraesCS5A01G222500 chr1B 82.430 609 101 5 2038 2643 296499678 296500283 1.540000e-145 527.0
23 TraesCS5A01G222500 chr1B 84.282 369 53 3 3999 4366 296501656 296502020 7.700000e-94 355.0
24 TraesCS5A01G222500 chr1B 77.586 464 74 24 3097 3543 296500551 296501001 2.890000e-63 254.0
25 TraesCS5A01G222500 chr1B 84.109 258 39 2 2740 2996 296500287 296500543 1.340000e-61 248.0
26 TraesCS5A01G222500 chr1B 77.083 240 53 2 2368 2606 122923382 122923144 3.040000e-28 137.0
27 TraesCS5A01G222500 chr2D 89.461 408 20 10 25 411 640258646 640258241 1.560000e-135 494.0
28 TraesCS5A01G222500 chr6A 81.949 554 90 5 4510 5058 47902465 47903013 1.590000e-125 460.0
29 TraesCS5A01G222500 chr3B 78.968 504 100 3 4500 5003 525611444 525611941 7.760000e-89 339.0
30 TraesCS5A01G222500 chr7D 75.229 436 95 11 4561 4988 14880893 14880463 1.780000e-45 195.0
31 TraesCS5A01G222500 chr7D 82.192 146 24 2 2733 2877 449060452 449060308 2.360000e-24 124.0
32 TraesCS5A01G222500 chr7D 81.176 85 14 2 4273 4357 449058912 449058830 4.040000e-07 67.6
33 TraesCS5A01G222500 chr4A 75.171 439 92 15 4561 4989 721385380 721385811 2.300000e-44 191.0
34 TraesCS5A01G222500 chr4A 92.857 126 9 0 1234 1359 629365341 629365216 3.850000e-42 183.0
35 TraesCS5A01G222500 chr7A 82.993 147 21 4 2733 2877 546709766 546709910 5.080000e-26 130.0
36 TraesCS5A01G222500 chr7A 82.667 75 13 0 4273 4347 546711332 546711406 4.040000e-07 67.6
37 TraesCS5A01G222500 chr7B 82.877 146 21 4 2733 2876 466972133 466971990 1.830000e-25 128.0
38 TraesCS5A01G222500 chr7B 82.667 75 13 0 4273 4347 466970390 466970316 4.040000e-07 67.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G222500 chr5A 438470644 438476889 6245 True 11535.000000 11535 100.000000 1 6246 1 chr5A.!!$R1 6245
1 TraesCS5A01G222500 chr5D 337300542 337306846 6304 True 2873.333333 7330 91.307667 26 6246 3 chr5D.!!$R1 6220
2 TraesCS5A01G222500 chr5B 395920644 395926975 6331 True 1689.000000 5097 90.598800 25 6246 5 chr5B.!!$R1 6221
3 TraesCS5A01G222500 chr1A 256824713 256827668 2955 False 392.200000 580 82.804000 2038 5024 5 chr1A.!!$F1 2986
4 TraesCS5A01G222500 chr1D 202567840 202570177 2337 False 356.250000 564 83.139250 2740 5024 4 chr1D.!!$F1 2284
5 TraesCS5A01G222500 chr1B 296499678 296502657 2979 False 389.600000 564 82.851200 2038 5021 5 chr1B.!!$F1 2983
6 TraesCS5A01G222500 chr6A 47902465 47903013 548 False 460.000000 460 81.949000 4510 5058 1 chr6A.!!$F1 548

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
165 171 0.169672 CCGTCCAGCTTTGCTTCATG 59.830 55.0 0.0 0.0 36.40 3.07 F
203 229 0.178533 TGGTTTCCTCGTGACGGTTT 59.821 50.0 4.7 0.0 0.00 3.27 F
393 420 0.179179 GCTTCACGCTCAATGCTTCC 60.179 55.0 0.0 0.0 40.11 3.46 F
407 434 0.712222 GCTTCCTACGAAACGAACCG 59.288 55.0 0.0 0.0 0.00 4.44 F
1789 2007 0.261696 GCATCCACCCCTACCCAATT 59.738 55.0 0.0 0.0 0.00 2.32 F
2683 3005 0.247145 CAACAACTATTCGCCGTCGC 60.247 55.0 0.0 0.0 35.26 5.19 F
3022 3346 0.390472 CTGCACCGTCCCTTCTTCTC 60.390 60.0 0.0 0.0 0.00 2.87 F
4449 5078 0.099791 GACGGGTTTTGTGGTGTGTG 59.900 55.0 0.0 0.0 0.00 3.82 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1630 1814 0.251297 CCAGGGCTTGATGGACACAA 60.251 55.000 0.00 0.0 39.02 3.33 R
1777 1995 0.465642 GCTCGGAAATTGGGTAGGGG 60.466 60.000 0.00 0.0 0.00 4.79 R
1789 2007 0.606604 GTTAGTCACCTGGCTCGGAA 59.393 55.000 0.00 0.0 0.00 4.30 R
1821 2040 0.893270 TGGTTCCTTGGCATCAACCG 60.893 55.000 14.54 0.0 41.17 4.44 R
2801 3125 0.107456 CCTTCATGATCCACCCCTCG 59.893 60.000 0.00 0.0 0.00 4.63 R
3986 4401 1.179152 CAGCTGCACCATTCCATTCA 58.821 50.000 0.00 0.0 0.00 2.57 R
4694 5323 1.134281 GAACTCGTCGTCCTCGTCC 59.866 63.158 0.00 0.0 38.33 4.79 R
5450 6168 0.036388 CTTGGCACTCGGGCTCTTTA 60.036 55.000 0.00 0.0 43.83 1.85 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 3.123620 CAGTTCTCCAGCAGCGGC 61.124 66.667 0.00 0.00 41.61 6.53
18 19 3.630013 AGTTCTCCAGCAGCGGCA 61.630 61.111 12.44 0.00 44.61 5.69
19 20 3.426568 GTTCTCCAGCAGCGGCAC 61.427 66.667 12.44 0.00 44.61 5.01
45 46 4.980805 GGTCGGTCGCACCTGCAA 62.981 66.667 0.00 0.00 42.21 4.08
82 83 0.175760 GTCCTACGATGCTTCAGCCA 59.824 55.000 0.00 0.00 41.18 4.75
87 88 3.207669 GATGCTTCAGCCAGGCGG 61.208 66.667 5.55 5.25 41.18 6.13
116 117 1.011968 CGTTTCGCATTCAGGACGGA 61.012 55.000 0.00 0.00 0.00 4.69
136 142 3.575805 GAGACATCTCTCCTCCTGGATT 58.424 50.000 0.00 0.00 42.29 3.01
140 146 5.083122 GACATCTCTCCTCCTGGATTATCA 58.917 45.833 0.00 0.00 42.29 2.15
162 168 1.968540 AGCCGTCCAGCTTTGCTTC 60.969 57.895 0.00 0.00 41.41 3.86
163 169 2.260869 GCCGTCCAGCTTTGCTTCA 61.261 57.895 0.00 0.00 36.40 3.02
165 171 0.169672 CCGTCCAGCTTTGCTTCATG 59.830 55.000 0.00 0.00 36.40 3.07
168 174 1.881973 GTCCAGCTTTGCTTCATGTCA 59.118 47.619 0.00 0.00 36.40 3.58
170 176 2.490509 TCCAGCTTTGCTTCATGTCATG 59.509 45.455 6.47 6.47 36.40 3.07
171 177 2.230508 CCAGCTTTGCTTCATGTCATGT 59.769 45.455 12.54 0.00 36.40 3.21
172 178 3.499048 CAGCTTTGCTTCATGTCATGTC 58.501 45.455 12.54 4.53 36.40 3.06
203 229 0.178533 TGGTTTCCTCGTGACGGTTT 59.821 50.000 4.70 0.00 0.00 3.27
337 364 3.745975 TCATAACACTGGCGTCAGAAAAG 59.254 43.478 26.48 12.59 43.49 2.27
350 377 3.607370 GAAAAGGGGCCTCGAGCGT 62.607 63.158 6.99 0.00 45.17 5.07
393 420 0.179179 GCTTCACGCTCAATGCTTCC 60.179 55.000 0.00 0.00 40.11 3.46
407 434 0.712222 GCTTCCTACGAAACGAACCG 59.288 55.000 0.00 0.00 0.00 4.44
430 457 1.852157 GCCCATGGGACTGAACCTGA 61.852 60.000 36.00 0.00 37.50 3.86
431 458 0.921896 CCCATGGGACTGAACCTGAT 59.078 55.000 28.27 0.00 37.50 2.90
450 499 4.970621 TCCTGAGGACATGCATGC 57.029 55.556 26.53 18.01 0.00 4.06
469 518 0.948623 CGTTGCATCTGTTCACCGGA 60.949 55.000 9.46 0.00 0.00 5.14
487 540 1.464997 GGAAGCAAGTAAACAGAGCCG 59.535 52.381 0.00 0.00 0.00 5.52
489 542 3.323243 GAAGCAAGTAAACAGAGCCGTA 58.677 45.455 0.00 0.00 0.00 4.02
490 543 3.611766 AGCAAGTAAACAGAGCCGTAT 57.388 42.857 0.00 0.00 0.00 3.06
491 544 4.730949 AGCAAGTAAACAGAGCCGTATA 57.269 40.909 0.00 0.00 0.00 1.47
492 545 5.277857 AGCAAGTAAACAGAGCCGTATAT 57.722 39.130 0.00 0.00 0.00 0.86
496 549 6.687105 GCAAGTAAACAGAGCCGTATATTTTG 59.313 38.462 0.00 0.00 0.00 2.44
508 629 5.982516 GCCGTATATTTTGATTGCATGGAAA 59.017 36.000 2.94 0.00 0.00 3.13
519 649 6.207213 TGATTGCATGGAAATTTTTGTTTGC 58.793 32.000 2.94 0.00 0.00 3.68
531 661 4.582701 TTTTGTTTGCCATGTTCGATCT 57.417 36.364 0.00 0.00 0.00 2.75
534 664 3.145286 TGTTTGCCATGTTCGATCTTGA 58.855 40.909 10.14 0.00 0.00 3.02
538 668 1.324736 GCCATGTTCGATCTTGACGAC 59.675 52.381 10.14 0.00 39.46 4.34
562 693 3.443099 AAAGCTGGACAAAGTTTGAGC 57.557 42.857 22.23 18.80 0.00 4.26
565 701 1.268079 GCTGGACAAAGTTTGAGCTCC 59.732 52.381 22.23 17.58 0.00 4.70
611 750 9.696917 ATTTTTCAATTGCTCTTTAAGGTACTG 57.303 29.630 0.00 0.00 40.86 2.74
624 763 1.066858 AGGTACTGCTCACCAATCACG 60.067 52.381 0.00 0.00 38.62 4.35
671 810 9.688091 AAGAGAGTTTTAGAAGAAGAAAAAGGT 57.312 29.630 0.00 0.00 0.00 3.50
672 811 9.114952 AGAGAGTTTTAGAAGAAGAAAAAGGTG 57.885 33.333 0.00 0.00 0.00 4.00
673 812 9.110502 GAGAGTTTTAGAAGAAGAAAAAGGTGA 57.889 33.333 0.00 0.00 0.00 4.02
674 813 8.894731 AGAGTTTTAGAAGAAGAAAAAGGTGAC 58.105 33.333 0.00 0.00 0.00 3.67
960 1132 1.911269 ACCCGCCAAAAACCATCCC 60.911 57.895 0.00 0.00 0.00 3.85
1031 1211 3.706373 CCACCTCCACACCCCTCG 61.706 72.222 0.00 0.00 0.00 4.63
1034 1214 3.391382 CCTCCACACCCCTCGTCC 61.391 72.222 0.00 0.00 0.00 4.79
1065 1245 4.577246 GGGAAGCGAGCGAGCGAT 62.577 66.667 1.41 0.00 43.00 4.58
1601 1785 2.666190 CCGCTCCATGCCGGTATG 60.666 66.667 24.19 24.19 38.78 2.39
1613 1797 2.283298 GCCGGTATGCATCATATCCTG 58.717 52.381 0.19 0.00 0.00 3.86
1620 1804 6.239402 CGGTATGCATCATATCCTGATATCCA 60.239 42.308 0.19 0.00 42.91 3.41
1630 1814 9.109246 TCATATCCTGATATCCATTCACTTCTT 57.891 33.333 0.00 0.00 31.98 2.52
1631 1815 9.736414 CATATCCTGATATCCATTCACTTCTTT 57.264 33.333 0.00 0.00 31.98 2.52
1648 1832 1.542915 CTTTGTGTCCATCAAGCCCTG 59.457 52.381 0.00 0.00 0.00 4.45
1683 1901 8.398491 AGCAGCTTAAATTAAATTGTTCATCG 57.602 30.769 0.00 0.00 0.00 3.84
1684 1902 8.243426 AGCAGCTTAAATTAAATTGTTCATCGA 58.757 29.630 0.00 0.00 0.00 3.59
1777 1995 2.177531 CTGCACAAGCGCATCCAC 59.822 61.111 11.47 0.00 46.23 4.02
1786 2004 3.087253 CGCATCCACCCCTACCCA 61.087 66.667 0.00 0.00 0.00 4.51
1789 2007 0.261696 GCATCCACCCCTACCCAATT 59.738 55.000 0.00 0.00 0.00 2.32
1808 2027 0.606604 TTCCGAGCCAGGTGACTAAC 59.393 55.000 0.00 0.00 40.21 2.34
1821 2040 6.318396 CCAGGTGACTAACTACTTACTCTACC 59.682 46.154 0.00 0.00 40.21 3.18
1878 2097 2.357637 TGTTGTGTTGGTAAGCTCAAGC 59.642 45.455 0.00 0.00 42.49 4.01
1879 2098 2.340210 TGTGTTGGTAAGCTCAAGCA 57.660 45.000 4.59 0.00 45.16 3.91
1902 2121 6.257849 GCAAGCAACATGAATTTGATGATGAT 59.742 34.615 9.65 1.31 0.00 2.45
2665 2987 1.489574 CGTACTACAACGTGGCAACA 58.510 50.000 0.00 0.00 38.01 3.33
2681 3003 2.834689 CAACAACAACTATTCGCCGTC 58.165 47.619 0.00 0.00 0.00 4.79
2682 3004 1.065358 ACAACAACTATTCGCCGTCG 58.935 50.000 0.00 0.00 0.00 5.12
2683 3005 0.247145 CAACAACTATTCGCCGTCGC 60.247 55.000 0.00 0.00 35.26 5.19
2684 3006 1.356527 AACAACTATTCGCCGTCGCC 61.357 55.000 0.00 0.00 35.26 5.54
2685 3007 2.581409 AACTATTCGCCGTCGCCG 60.581 61.111 0.00 0.00 35.26 6.46
2686 3008 3.346631 AACTATTCGCCGTCGCCGT 62.347 57.895 0.00 0.00 35.26 5.68
2687 3009 3.022914 CTATTCGCCGTCGCCGTC 61.023 66.667 0.00 0.00 35.26 4.79
2688 3010 4.892379 TATTCGCCGTCGCCGTCG 62.892 66.667 0.00 0.00 36.68 5.12
2728 3052 7.506971 ACATTTCTGATCATCTCTTGCTATGA 58.493 34.615 0.00 0.00 36.60 2.15
3022 3346 0.390472 CTGCACCGTCCCTTCTTCTC 60.390 60.000 0.00 0.00 0.00 2.87
3042 3366 1.324736 CCAGAGCTTCGTCGTAAATGC 59.675 52.381 0.00 0.00 0.00 3.56
3052 3377 2.092211 CGTCGTAAATGCCAGAACTCAC 59.908 50.000 0.00 0.00 0.00 3.51
3070 3395 2.607635 TCACAACGTTTCTTGCTCACTC 59.392 45.455 0.00 0.00 0.00 3.51
3071 3396 2.609459 CACAACGTTTCTTGCTCACTCT 59.391 45.455 0.00 0.00 0.00 3.24
3085 3410 4.758674 TGCTCACTCTTCTCTGAATTTTGG 59.241 41.667 0.00 0.00 0.00 3.28
3089 3414 2.421424 CTCTTCTCTGAATTTTGGCCGG 59.579 50.000 0.00 0.00 0.00 6.13
3327 3663 6.471198 CGACGTAAGATTGCTATACAGTTCAA 59.529 38.462 0.00 0.00 43.62 2.69
3328 3664 7.167635 CGACGTAAGATTGCTATACAGTTCAAT 59.832 37.037 0.00 0.00 43.62 2.57
3329 3665 8.354011 ACGTAAGATTGCTATACAGTTCAATC 57.646 34.615 5.87 5.87 42.90 2.67
3330 3666 7.979537 ACGTAAGATTGCTATACAGTTCAATCA 59.020 33.333 13.92 0.00 44.21 2.57
3331 3667 8.269424 CGTAAGATTGCTATACAGTTCAATCAC 58.731 37.037 13.92 5.75 44.21 3.06
3332 3668 9.098355 GTAAGATTGCTATACAGTTCAATCACA 57.902 33.333 13.92 1.64 44.21 3.58
3348 3684 6.061441 TCAATCACACTTCACACCTACATTT 58.939 36.000 0.00 0.00 0.00 2.32
3394 3731 3.674997 TCTGACATTGGTAGTTCTTGGC 58.325 45.455 0.00 0.00 0.00 4.52
3484 3827 3.506096 CGACAGGCGCTCTACGGA 61.506 66.667 7.64 0.00 43.93 4.69
3496 3839 1.962100 CTCTACGGATACAACCCTCCC 59.038 57.143 0.00 0.00 0.00 4.30
3617 4008 1.542915 CCGACGGAGGTAAGTTTCAGA 59.457 52.381 8.64 0.00 0.00 3.27
3634 4025 2.141517 CAGAGGAAGCACACACTGAAG 58.858 52.381 0.00 0.00 0.00 3.02
3635 4026 1.765314 AGAGGAAGCACACACTGAAGT 59.235 47.619 0.00 0.00 0.00 3.01
3636 4027 2.965831 AGAGGAAGCACACACTGAAGTA 59.034 45.455 0.00 0.00 0.00 2.24
3638 4029 2.700897 AGGAAGCACACACTGAAGTACT 59.299 45.455 0.00 0.00 0.00 2.73
3640 4031 3.492656 GGAAGCACACACTGAAGTACTGA 60.493 47.826 0.00 0.00 0.00 3.41
3641 4032 3.819564 AGCACACACTGAAGTACTGAA 57.180 42.857 0.00 0.00 0.00 3.02
3642 4033 3.458189 AGCACACACTGAAGTACTGAAC 58.542 45.455 0.00 0.00 0.00 3.18
3643 4034 3.118775 AGCACACACTGAAGTACTGAACA 60.119 43.478 0.00 0.00 0.00 3.18
3652 4043 7.093945 ACACTGAAGTACTGAACATTTGGTTTT 60.094 33.333 0.00 0.00 40.63 2.43
3699 4090 4.281941 GGTGAAATTTCCTCTTTGGCTCTT 59.718 41.667 15.48 0.00 35.26 2.85
3919 4330 5.116882 AGAGGTACAGAGAAACAACACAAC 58.883 41.667 0.00 0.00 0.00 3.32
3921 4332 2.825086 ACAGAGAAACAACACAACGC 57.175 45.000 0.00 0.00 0.00 4.84
3922 4333 2.080693 ACAGAGAAACAACACAACGCA 58.919 42.857 0.00 0.00 0.00 5.24
3923 4334 2.486203 ACAGAGAAACAACACAACGCAA 59.514 40.909 0.00 0.00 0.00 4.85
3925 4336 3.543494 CAGAGAAACAACACAACGCAAAG 59.457 43.478 0.00 0.00 0.00 2.77
3926 4337 3.438781 AGAGAAACAACACAACGCAAAGA 59.561 39.130 0.00 0.00 0.00 2.52
3927 4338 4.096382 AGAGAAACAACACAACGCAAAGAT 59.904 37.500 0.00 0.00 0.00 2.40
3948 4359 3.732212 TCACTTCAGACAACTCCACATG 58.268 45.455 0.00 0.00 0.00 3.21
3952 4367 2.849942 TCAGACAACTCCACATGGTTG 58.150 47.619 10.03 10.03 45.55 3.77
3966 4381 2.543777 TGGTTGCAGACTTCCAGTAC 57.456 50.000 0.00 0.00 0.00 2.73
3971 4386 4.319177 GTTGCAGACTTCCAGTACTGATT 58.681 43.478 24.68 4.88 30.29 2.57
3975 4390 4.757149 GCAGACTTCCAGTACTGATTTGTT 59.243 41.667 24.68 3.05 30.29 2.83
3976 4391 5.334414 GCAGACTTCCAGTACTGATTTGTTG 60.334 44.000 24.68 15.13 30.29 3.33
3978 4393 6.260936 CAGACTTCCAGTACTGATTTGTTGTT 59.739 38.462 24.68 5.20 30.29 2.83
3980 4395 5.531287 ACTTCCAGTACTGATTTGTTGTTCC 59.469 40.000 24.68 0.00 0.00 3.62
3983 4398 4.216257 CCAGTACTGATTTGTTGTTCCTGG 59.784 45.833 24.68 0.00 0.00 4.45
3984 4399 3.821033 AGTACTGATTTGTTGTTCCTGGC 59.179 43.478 0.00 0.00 0.00 4.85
3985 4400 2.665165 ACTGATTTGTTGTTCCTGGCA 58.335 42.857 0.00 0.00 0.00 4.92
3986 4401 3.233507 ACTGATTTGTTGTTCCTGGCAT 58.766 40.909 0.00 0.00 0.00 4.40
3990 4405 4.283978 TGATTTGTTGTTCCTGGCATGAAT 59.716 37.500 8.45 0.00 0.00 2.57
3991 4406 3.663995 TTGTTGTTCCTGGCATGAATG 57.336 42.857 8.45 0.00 0.00 2.67
4290 4842 0.970937 TCTACCCCTTCACCTCGCTG 60.971 60.000 0.00 0.00 0.00 5.18
4391 5020 3.879892 CAGCTAGCTACTTTTCCCCATTC 59.120 47.826 18.86 0.00 0.00 2.67
4433 5062 1.194547 CACCGGTTCAAATGTCTGACG 59.805 52.381 2.97 0.00 0.00 4.35
4447 5076 0.380378 CTGACGGGTTTTGTGGTGTG 59.620 55.000 0.00 0.00 0.00 3.82
4448 5077 0.322636 TGACGGGTTTTGTGGTGTGT 60.323 50.000 0.00 0.00 0.00 3.72
4449 5078 0.099791 GACGGGTTTTGTGGTGTGTG 59.900 55.000 0.00 0.00 0.00 3.82
4451 5080 0.528470 CGGGTTTTGTGGTGTGTGTT 59.472 50.000 0.00 0.00 0.00 3.32
4452 5081 1.734047 CGGGTTTTGTGGTGTGTGTTG 60.734 52.381 0.00 0.00 0.00 3.33
4456 5085 3.385577 GTTTTGTGGTGTGTGTTGTGTT 58.614 40.909 0.00 0.00 0.00 3.32
4457 5086 2.713895 TTGTGGTGTGTGTTGTGTTG 57.286 45.000 0.00 0.00 0.00 3.33
4458 5087 0.242286 TGTGGTGTGTGTTGTGTTGC 59.758 50.000 0.00 0.00 0.00 4.17
5072 5704 3.247173 GCTGATCGCATTAAGAACTCTGG 59.753 47.826 4.93 0.00 38.92 3.86
5074 5706 4.433615 TGATCGCATTAAGAACTCTGGAC 58.566 43.478 0.00 0.00 0.00 4.02
5301 5934 4.374399 AGTTTTGCTGAAATCAAAGCCTG 58.626 39.130 0.00 0.00 38.71 4.85
5312 5945 6.094048 TGAAATCAAAGCCTGATGTAGCTAAC 59.906 38.462 0.00 0.00 44.43 2.34
5313 5946 4.826274 TCAAAGCCTGATGTAGCTAACT 57.174 40.909 0.00 0.00 38.74 2.24
5343 5976 6.925165 CAGGTGCATTTACTTGTTTTCTGAAT 59.075 34.615 0.00 0.00 0.00 2.57
5359 5992 9.226345 GTTTTCTGAATGTAAAGTTGAAGAGTG 57.774 33.333 0.00 0.00 0.00 3.51
5381 6014 3.432749 GGCATTCAGACTGCAGGATAAGA 60.433 47.826 19.93 5.61 41.47 2.10
5384 6017 5.426504 CATTCAGACTGCAGGATAAGAAGT 58.573 41.667 19.93 0.00 0.00 3.01
5385 6018 4.727507 TCAGACTGCAGGATAAGAAGTC 57.272 45.455 19.93 3.63 38.01 3.01
5386 6019 3.449018 TCAGACTGCAGGATAAGAAGTCC 59.551 47.826 19.93 0.00 38.40 3.85
5387 6020 3.450457 CAGACTGCAGGATAAGAAGTCCT 59.550 47.826 19.93 0.00 46.92 3.85
5438 6156 0.390472 GCAGAGCGCTTTAGACAGGT 60.390 55.000 13.26 0.00 37.77 4.00
5439 6157 1.941668 GCAGAGCGCTTTAGACAGGTT 60.942 52.381 13.26 0.00 37.77 3.50
5440 6158 1.996191 CAGAGCGCTTTAGACAGGTTC 59.004 52.381 13.26 0.00 0.00 3.62
5441 6159 1.896465 AGAGCGCTTTAGACAGGTTCT 59.104 47.619 13.26 0.00 38.51 3.01
5442 6160 2.300437 AGAGCGCTTTAGACAGGTTCTT 59.700 45.455 13.26 0.00 35.55 2.52
5443 6161 2.413453 GAGCGCTTTAGACAGGTTCTTG 59.587 50.000 13.26 0.00 35.55 3.02
5444 6162 1.135944 GCGCTTTAGACAGGTTCTTGC 60.136 52.381 0.00 0.00 35.55 4.01
5445 6163 2.417719 CGCTTTAGACAGGTTCTTGCT 58.582 47.619 0.00 0.00 35.55 3.91
5446 6164 2.808543 CGCTTTAGACAGGTTCTTGCTT 59.191 45.455 0.00 0.00 35.55 3.91
5447 6165 3.994392 CGCTTTAGACAGGTTCTTGCTTA 59.006 43.478 0.00 0.00 35.55 3.09
5448 6166 4.092091 CGCTTTAGACAGGTTCTTGCTTAG 59.908 45.833 0.00 0.00 35.55 2.18
5449 6167 4.393371 GCTTTAGACAGGTTCTTGCTTAGG 59.607 45.833 0.00 0.00 35.55 2.69
5450 6168 5.552178 CTTTAGACAGGTTCTTGCTTAGGT 58.448 41.667 0.00 0.00 35.55 3.08
5451 6169 6.675413 TTTAGACAGGTTCTTGCTTAGGTA 57.325 37.500 0.00 0.00 35.55 3.08
5452 6170 6.675413 TTAGACAGGTTCTTGCTTAGGTAA 57.325 37.500 0.00 0.00 35.55 2.85
5453 6171 5.562298 AGACAGGTTCTTGCTTAGGTAAA 57.438 39.130 0.00 0.00 0.00 2.01
5454 6172 5.552178 AGACAGGTTCTTGCTTAGGTAAAG 58.448 41.667 0.00 0.00 38.32 1.85
5455 6173 5.307196 AGACAGGTTCTTGCTTAGGTAAAGA 59.693 40.000 0.00 0.00 37.38 2.52
5456 6174 5.552178 ACAGGTTCTTGCTTAGGTAAAGAG 58.448 41.667 0.00 0.00 37.38 2.85
5457 6175 4.393371 CAGGTTCTTGCTTAGGTAAAGAGC 59.607 45.833 0.00 0.00 37.38 4.09
5458 6176 3.690139 GGTTCTTGCTTAGGTAAAGAGCC 59.310 47.826 8.61 8.61 41.90 4.70
5459 6177 3.629142 TCTTGCTTAGGTAAAGAGCCC 57.371 47.619 0.00 0.00 37.38 5.19
5460 6178 2.093658 TCTTGCTTAGGTAAAGAGCCCG 60.094 50.000 0.00 0.00 37.38 6.13
5461 6179 1.563924 TGCTTAGGTAAAGAGCCCGA 58.436 50.000 0.00 0.00 37.38 5.14
5462 6180 1.480954 TGCTTAGGTAAAGAGCCCGAG 59.519 52.381 0.00 0.00 37.38 4.63
5463 6181 1.481363 GCTTAGGTAAAGAGCCCGAGT 59.519 52.381 0.00 0.00 37.38 4.18
5464 6182 2.738964 GCTTAGGTAAAGAGCCCGAGTG 60.739 54.545 0.00 0.00 37.38 3.51
5465 6183 0.822164 TAGGTAAAGAGCCCGAGTGC 59.178 55.000 0.00 0.00 0.00 4.40
5466 6184 1.449778 GGTAAAGAGCCCGAGTGCC 60.450 63.158 0.00 0.00 0.00 5.01
5467 6185 1.295423 GTAAAGAGCCCGAGTGCCA 59.705 57.895 0.00 0.00 0.00 4.92
5468 6186 0.321298 GTAAAGAGCCCGAGTGCCAA 60.321 55.000 0.00 0.00 0.00 4.52
5469 6187 0.036388 TAAAGAGCCCGAGTGCCAAG 60.036 55.000 0.00 0.00 0.00 3.61
5470 6188 2.754664 AAAGAGCCCGAGTGCCAAGG 62.755 60.000 0.00 0.00 0.00 3.61
5474 6192 3.411517 CCCGAGTGCCAAGGGGAT 61.412 66.667 0.00 0.00 42.59 3.85
5475 6193 2.190578 CCGAGTGCCAAGGGGATC 59.809 66.667 0.00 0.00 35.59 3.36
5476 6194 2.370445 CCGAGTGCCAAGGGGATCT 61.370 63.158 0.00 0.00 35.59 2.75
5477 6195 1.048724 CCGAGTGCCAAGGGGATCTA 61.049 60.000 0.00 0.00 35.59 1.98
5478 6196 0.830648 CGAGTGCCAAGGGGATCTAA 59.169 55.000 0.00 0.00 35.59 2.10
5482 6200 3.126453 AGTGCCAAGGGGATCTAAATCT 58.874 45.455 0.00 0.00 35.59 2.40
5495 6213 9.804758 GGGGATCTAAATCTAATACAGTATTCG 57.195 37.037 9.20 3.88 32.12 3.34
5517 6235 7.908193 TCGACAATTCAAAGACTTTAAAAGC 57.092 32.000 0.00 0.00 0.00 3.51
5518 6236 7.476667 TCGACAATTCAAAGACTTTAAAAGCA 58.523 30.769 0.00 0.00 0.00 3.91
5519 6237 8.134895 TCGACAATTCAAAGACTTTAAAAGCAT 58.865 29.630 0.00 0.00 0.00 3.79
5520 6238 8.755018 CGACAATTCAAAGACTTTAAAAGCATT 58.245 29.630 0.00 0.00 0.00 3.56
5523 6241 7.873739 ATTCAAAGACTTTAAAAGCATTCCG 57.126 32.000 0.00 0.00 0.00 4.30
5524 6242 6.627395 TCAAAGACTTTAAAAGCATTCCGA 57.373 33.333 0.00 0.00 0.00 4.55
5525 6243 7.214467 TCAAAGACTTTAAAAGCATTCCGAT 57.786 32.000 0.00 0.00 0.00 4.18
5527 6245 8.956426 TCAAAGACTTTAAAAGCATTCCGATAT 58.044 29.630 0.00 0.00 0.00 1.63
5528 6246 9.226345 CAAAGACTTTAAAAGCATTCCGATATC 57.774 33.333 0.00 0.00 0.00 1.63
5529 6247 8.506168 AAGACTTTAAAAGCATTCCGATATCA 57.494 30.769 3.12 0.00 0.00 2.15
5530 6248 8.506168 AGACTTTAAAAGCATTCCGATATCAA 57.494 30.769 3.12 0.00 0.00 2.57
5532 6250 7.480810 ACTTTAAAAGCATTCCGATATCAACC 58.519 34.615 3.12 0.00 0.00 3.77
5533 6251 7.122055 ACTTTAAAAGCATTCCGATATCAACCA 59.878 33.333 3.12 0.00 0.00 3.67
5534 6252 5.913137 AAAAGCATTCCGATATCAACCAA 57.087 34.783 3.12 0.00 0.00 3.67
5535 6253 5.913137 AAAGCATTCCGATATCAACCAAA 57.087 34.783 3.12 0.00 0.00 3.28
5536 6254 4.900635 AGCATTCCGATATCAACCAAAC 57.099 40.909 3.12 0.00 0.00 2.93
5537 6255 3.632145 AGCATTCCGATATCAACCAAACC 59.368 43.478 3.12 0.00 0.00 3.27
5538 6256 3.380004 GCATTCCGATATCAACCAAACCA 59.620 43.478 3.12 0.00 0.00 3.67
5539 6257 4.733523 GCATTCCGATATCAACCAAACCAC 60.734 45.833 3.12 0.00 0.00 4.16
5540 6258 2.993937 TCCGATATCAACCAAACCACC 58.006 47.619 3.12 0.00 0.00 4.61
5541 6259 2.306219 TCCGATATCAACCAAACCACCA 59.694 45.455 3.12 0.00 0.00 4.17
5542 6260 2.422127 CCGATATCAACCAAACCACCAC 59.578 50.000 3.12 0.00 0.00 4.16
5543 6261 3.078097 CGATATCAACCAAACCACCACA 58.922 45.455 3.12 0.00 0.00 4.17
5544 6262 3.126858 CGATATCAACCAAACCACCACAG 59.873 47.826 3.12 0.00 0.00 3.66
5545 6263 2.746279 ATCAACCAAACCACCACAGA 57.254 45.000 0.00 0.00 0.00 3.41
5546 6264 2.051334 TCAACCAAACCACCACAGAG 57.949 50.000 0.00 0.00 0.00 3.35
5547 6265 1.032014 CAACCAAACCACCACAGAGG 58.968 55.000 0.00 0.00 45.67 3.69
5561 6279 3.686726 CCACAGAGGTGTCATTTTAGAGC 59.313 47.826 0.00 0.00 43.71 4.09
5562 6280 4.318332 CACAGAGGTGTCATTTTAGAGCA 58.682 43.478 0.00 0.00 40.24 4.26
5563 6281 4.391216 CACAGAGGTGTCATTTTAGAGCAG 59.609 45.833 0.00 0.00 40.24 4.24
5564 6282 4.284490 ACAGAGGTGTCATTTTAGAGCAGA 59.716 41.667 0.00 0.00 26.76 4.26
5565 6283 5.046014 ACAGAGGTGTCATTTTAGAGCAGAT 60.046 40.000 0.00 0.00 26.76 2.90
5566 6284 6.155221 ACAGAGGTGTCATTTTAGAGCAGATA 59.845 38.462 0.00 0.00 26.76 1.98
5567 6285 7.044181 CAGAGGTGTCATTTTAGAGCAGATAA 58.956 38.462 0.00 0.00 0.00 1.75
5568 6286 7.550551 CAGAGGTGTCATTTTAGAGCAGATAAA 59.449 37.037 0.00 0.00 0.00 1.40
5569 6287 8.270744 AGAGGTGTCATTTTAGAGCAGATAAAT 58.729 33.333 0.00 0.00 0.00 1.40
5570 6288 8.814038 AGGTGTCATTTTAGAGCAGATAAATT 57.186 30.769 0.00 0.00 0.00 1.82
5571 6289 9.905713 AGGTGTCATTTTAGAGCAGATAAATTA 57.094 29.630 0.00 0.00 0.00 1.40
5581 6299 7.269477 AGAGCAGATAAATTAACAGCATTCC 57.731 36.000 1.16 0.00 0.00 3.01
5582 6300 6.830324 AGAGCAGATAAATTAACAGCATTCCA 59.170 34.615 1.16 0.00 0.00 3.53
5583 6301 6.799512 AGCAGATAAATTAACAGCATTCCAC 58.200 36.000 1.16 0.00 0.00 4.02
5584 6302 6.377996 AGCAGATAAATTAACAGCATTCCACA 59.622 34.615 1.16 0.00 0.00 4.17
5585 6303 7.035004 GCAGATAAATTAACAGCATTCCACAA 58.965 34.615 0.00 0.00 0.00 3.33
5586 6304 7.707893 GCAGATAAATTAACAGCATTCCACAAT 59.292 33.333 0.00 0.00 0.00 2.71
5587 6305 9.590451 CAGATAAATTAACAGCATTCCACAATT 57.410 29.630 0.00 0.00 0.00 2.32
5588 6306 9.807649 AGATAAATTAACAGCATTCCACAATTC 57.192 29.630 0.00 0.00 0.00 2.17
5589 6307 9.585099 GATAAATTAACAGCATTCCACAATTCA 57.415 29.630 0.00 0.00 0.00 2.57
5590 6308 9.941325 ATAAATTAACAGCATTCCACAATTCAA 57.059 25.926 0.00 0.00 0.00 2.69
5591 6309 8.674263 AAATTAACAGCATTCCACAATTCAAA 57.326 26.923 0.00 0.00 0.00 2.69
5592 6310 7.894376 ATTAACAGCATTCCACAATTCAAAG 57.106 32.000 0.00 0.00 0.00 2.77
5593 6311 5.534207 AACAGCATTCCACAATTCAAAGA 57.466 34.783 0.00 0.00 0.00 2.52
5594 6312 4.874970 ACAGCATTCCACAATTCAAAGAC 58.125 39.130 0.00 0.00 0.00 3.01
5595 6313 4.586001 ACAGCATTCCACAATTCAAAGACT 59.414 37.500 0.00 0.00 0.00 3.24
5596 6314 5.069516 ACAGCATTCCACAATTCAAAGACTT 59.930 36.000 0.00 0.00 0.00 3.01
5597 6315 5.987347 CAGCATTCCACAATTCAAAGACTTT 59.013 36.000 0.00 0.00 0.00 2.66
5598 6316 7.147312 CAGCATTCCACAATTCAAAGACTTTA 58.853 34.615 0.00 0.00 0.00 1.85
5609 6327 9.339492 CAATTCAAAGACTTTAGAAGCAGAATC 57.661 33.333 0.00 0.00 0.00 2.52
5611 6329 5.940470 TCAAAGACTTTAGAAGCAGAATCCC 59.060 40.000 0.00 0.00 0.00 3.85
5618 6336 6.042093 ACTTTAGAAGCAGAATCCCGATATCA 59.958 38.462 3.12 0.00 0.00 2.15
5633 6363 3.126858 CGATATCAACCAAACCACCACAG 59.873 47.826 3.12 0.00 0.00 3.66
5652 6382 4.872691 CACAGAGGTGCCATTTTAGAGTAG 59.127 45.833 0.00 0.00 38.37 2.57
5659 6389 9.343539 GAGGTGCCATTTTAGAGTAGATAAATT 57.656 33.333 0.00 0.00 0.00 1.82
5674 6404 9.461312 AGTAGATAAATTAACAGCAATCCAACA 57.539 29.630 0.00 0.00 0.00 3.33
5676 6406 7.260603 AGATAAATTAACAGCAATCCAACAGC 58.739 34.615 0.00 0.00 0.00 4.40
5683 6413 2.029739 CAGCAATCCAACAGCAACATGA 60.030 45.455 0.00 0.00 0.00 3.07
5696 6426 5.822519 ACAGCAACATGAATATTGGTACGAT 59.177 36.000 0.00 0.00 34.88 3.73
5703 6433 8.315391 ACATGAATATTGGTACGATTGAGATG 57.685 34.615 0.00 0.00 0.00 2.90
5705 6435 7.946655 TGAATATTGGTACGATTGAGATGTC 57.053 36.000 0.00 0.00 0.00 3.06
5706 6436 6.929049 TGAATATTGGTACGATTGAGATGTCC 59.071 38.462 0.00 0.00 0.00 4.02
5707 6437 2.863401 TGGTACGATTGAGATGTCCG 57.137 50.000 0.00 0.00 0.00 4.79
5708 6438 2.097036 TGGTACGATTGAGATGTCCGT 58.903 47.619 0.00 0.00 37.27 4.69
5709 6439 3.281158 TGGTACGATTGAGATGTCCGTA 58.719 45.455 0.00 0.00 35.05 4.02
5710 6440 3.695556 TGGTACGATTGAGATGTCCGTAA 59.304 43.478 0.00 0.00 37.44 3.18
5734 6464 3.676291 CCAAACAATGGGGTTGGTTAG 57.324 47.619 2.98 0.00 45.77 2.34
5763 6494 3.257393 AGAGAGCACAGCTACAAAATCG 58.743 45.455 0.00 0.00 39.88 3.34
5768 6499 1.131126 CACAGCTACAAAATCGGGCAG 59.869 52.381 0.00 0.00 0.00 4.85
5772 6503 1.453155 CTACAAAATCGGGCAGCACT 58.547 50.000 0.00 0.00 0.00 4.40
5794 6525 3.030291 TGTTGCACACAAAAGGGAGAAT 58.970 40.909 0.00 0.00 37.58 2.40
5796 6527 2.942804 TGCACACAAAAGGGAGAATCA 58.057 42.857 0.00 0.00 36.25 2.57
5800 6531 5.048083 TGCACACAAAAGGGAGAATCAATAC 60.048 40.000 0.00 0.00 36.25 1.89
5819 6550 7.928873 TCAATACCTTTCAGTATCTTTTCCCT 58.071 34.615 0.00 0.00 31.65 4.20
5821 6552 9.681062 CAATACCTTTCAGTATCTTTTCCCTTA 57.319 33.333 0.00 0.00 31.65 2.69
5882 6613 6.663734 AGAATACAGTGGAAAAGAATAGGGG 58.336 40.000 0.00 0.00 0.00 4.79
5883 6614 6.217693 AGAATACAGTGGAAAAGAATAGGGGT 59.782 38.462 0.00 0.00 0.00 4.95
5909 6640 9.689501 TCTACCCTCAAAAAGAAACTAAAAGAA 57.310 29.630 0.00 0.00 0.00 2.52
5917 6648 5.924769 AAGAAACTAAAAGAAGGGGGAGA 57.075 39.130 0.00 0.00 0.00 3.71
5929 6665 0.623617 GGGGGAGAAGGGGCTAGAAA 60.624 60.000 0.00 0.00 0.00 2.52
5939 6675 4.625607 AGGGGCTAGAAATGCACTATAC 57.374 45.455 0.00 0.00 33.73 1.47
5940 6676 3.006967 AGGGGCTAGAAATGCACTATACG 59.993 47.826 0.00 0.00 33.73 3.06
5941 6677 3.326747 GGGCTAGAAATGCACTATACGG 58.673 50.000 0.00 0.00 0.00 4.02
5942 6678 3.244112 GGGCTAGAAATGCACTATACGGT 60.244 47.826 0.00 0.00 0.00 4.83
5943 6679 4.021719 GGGCTAGAAATGCACTATACGGTA 60.022 45.833 0.00 0.00 0.00 4.02
5944 6680 5.510179 GGGCTAGAAATGCACTATACGGTAA 60.510 44.000 0.00 0.00 0.00 2.85
5945 6681 5.987347 GGCTAGAAATGCACTATACGGTAAA 59.013 40.000 0.00 0.00 0.00 2.01
5946 6682 6.480981 GGCTAGAAATGCACTATACGGTAAAA 59.519 38.462 0.00 0.00 0.00 1.52
6028 6769 2.429478 CACAGCATCACACCTTGATCA 58.571 47.619 0.00 0.00 43.68 2.92
6051 6793 5.529060 CAGCAGGGGATGTTTAATACTCTTC 59.471 44.000 0.00 0.00 0.00 2.87
6053 6795 5.631481 GCAGGGGATGTTTAATACTCTTCCA 60.631 44.000 0.00 0.00 0.00 3.53
6132 6874 0.535780 CAGGCTCAACTTGCACAGGA 60.536 55.000 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 3.123620 GCCGCTGCTGGAGAACTG 61.124 66.667 13.37 0.00 33.53 3.16
1 2 3.630013 TGCCGCTGCTGGAGAACT 61.630 61.111 13.37 0.00 38.71 3.01
2 3 3.426568 GTGCCGCTGCTGGAGAAC 61.427 66.667 13.37 5.56 38.71 3.01
5 6 4.827087 ATCGTGCCGCTGCTGGAG 62.827 66.667 13.37 0.00 38.71 3.86
9 10 4.166888 ATCCATCGTGCCGCTGCT 62.167 61.111 0.70 0.00 38.71 4.24
10 11 3.945434 CATCCATCGTGCCGCTGC 61.945 66.667 0.00 0.00 38.26 5.25
11 12 3.274586 CCATCCATCGTGCCGCTG 61.275 66.667 0.00 0.00 0.00 5.18
12 13 4.552365 CCCATCCATCGTGCCGCT 62.552 66.667 0.00 0.00 0.00 5.52
13 14 4.856801 ACCCATCCATCGTGCCGC 62.857 66.667 0.00 0.00 0.00 6.53
14 15 2.588877 GACCCATCCATCGTGCCG 60.589 66.667 0.00 0.00 0.00 5.69
15 16 2.588877 CGACCCATCCATCGTGCC 60.589 66.667 0.00 0.00 33.63 5.01
16 17 2.588877 CCGACCCATCCATCGTGC 60.589 66.667 0.00 0.00 36.60 5.34
17 18 1.227263 GACCGACCCATCCATCGTG 60.227 63.158 0.00 0.00 36.60 4.35
18 19 2.782222 CGACCGACCCATCCATCGT 61.782 63.158 0.00 0.00 36.60 3.73
19 20 2.027605 CGACCGACCCATCCATCG 59.972 66.667 0.00 0.00 38.08 3.84
20 21 2.280186 GCGACCGACCCATCCATC 60.280 66.667 0.00 0.00 0.00 3.51
21 22 3.080765 TGCGACCGACCCATCCAT 61.081 61.111 0.00 0.00 0.00 3.41
22 23 4.077184 GTGCGACCGACCCATCCA 62.077 66.667 0.00 0.00 0.00 3.41
23 24 4.832608 GGTGCGACCGACCCATCC 62.833 72.222 0.00 0.00 0.00 3.51
133 139 2.481952 GCTGGACGGCTGATTGATAATC 59.518 50.000 0.00 0.00 38.40 1.75
136 142 1.123077 AGCTGGACGGCTGATTGATA 58.877 50.000 4.57 0.00 41.43 2.15
140 146 1.589716 GCAAAGCTGGACGGCTGATT 61.590 55.000 6.38 0.00 42.24 2.57
162 168 1.799917 GCGCCAAATGGACATGACATG 60.800 52.381 14.02 14.02 37.39 3.21
163 169 0.457035 GCGCCAAATGGACATGACAT 59.543 50.000 2.98 0.17 37.39 3.06
165 171 0.527565 AAGCGCCAAATGGACATGAC 59.472 50.000 2.29 0.00 37.39 3.06
168 174 0.899717 ACCAAGCGCCAAATGGACAT 60.900 50.000 21.46 1.59 37.66 3.06
170 176 0.033366 AAACCAAGCGCCAAATGGAC 59.967 50.000 21.46 0.00 37.66 4.02
171 177 0.316841 GAAACCAAGCGCCAAATGGA 59.683 50.000 21.46 0.00 37.66 3.41
172 178 0.670239 GGAAACCAAGCGCCAAATGG 60.670 55.000 15.17 15.17 40.16 3.16
350 377 1.005037 AGACGCATCACCTTTCGCA 60.005 52.632 0.00 0.00 0.00 5.10
393 420 1.668253 GCCGTCGGTTCGTTTCGTAG 61.668 60.000 13.94 0.00 0.00 3.51
407 434 2.966732 TTCAGTCCCATGGGCCGTC 61.967 63.158 27.41 15.32 34.68 4.79
420 447 1.905215 CCTCAGGACATCAGGTTCAGT 59.095 52.381 0.00 0.00 0.00 3.41
450 499 0.948623 TCCGGTGAACAGATGCAACG 60.949 55.000 0.00 0.00 44.29 4.10
458 507 2.163818 TACTTGCTTCCGGTGAACAG 57.836 50.000 0.00 0.00 0.00 3.16
469 518 2.256117 ACGGCTCTGTTTACTTGCTT 57.744 45.000 0.00 0.00 0.00 3.91
491 544 9.819267 AAACAAAAATTTCCATGCAATCAAAAT 57.181 22.222 0.00 0.00 0.00 1.82
492 545 9.084164 CAAACAAAAATTTCCATGCAATCAAAA 57.916 25.926 0.00 0.00 0.00 2.44
496 549 5.630264 GGCAAACAAAAATTTCCATGCAATC 59.370 36.000 13.03 0.00 34.37 2.67
508 629 5.540911 AGATCGAACATGGCAAACAAAAAT 58.459 33.333 0.00 0.00 0.00 1.82
512 638 3.567585 TCAAGATCGAACATGGCAAACAA 59.432 39.130 0.00 0.00 0.00 2.83
519 649 2.606108 TGTCGTCAAGATCGAACATGG 58.394 47.619 0.00 0.00 39.01 3.66
546 676 2.291741 GTGGAGCTCAAACTTTGTCCAG 59.708 50.000 17.19 0.08 35.00 3.86
547 677 2.297701 GTGGAGCTCAAACTTTGTCCA 58.702 47.619 17.19 7.82 32.75 4.02
558 689 2.659063 CCATGTCCCGTGGAGCTCA 61.659 63.158 17.19 0.00 42.73 4.26
565 701 2.125147 ACGCATCCATGTCCCGTG 60.125 61.111 0.00 0.00 0.00 4.94
578 714 3.005684 AGAGCAATTGAAAAATGGACGCA 59.994 39.130 10.34 0.00 0.00 5.24
611 750 4.946784 AAACTATTCGTGATTGGTGAGC 57.053 40.909 0.00 0.00 0.00 4.26
658 797 3.253432 GCCATCGTCACCTTTTTCTTCTT 59.747 43.478 0.00 0.00 0.00 2.52
671 810 1.153249 GGATTTCCCGCCATCGTCA 60.153 57.895 0.00 0.00 0.00 4.35
672 811 0.746563 TTGGATTTCCCGCCATCGTC 60.747 55.000 0.00 0.00 37.93 4.20
673 812 0.748005 CTTGGATTTCCCGCCATCGT 60.748 55.000 0.00 0.00 37.93 3.73
674 813 0.748005 ACTTGGATTTCCCGCCATCG 60.748 55.000 0.00 0.00 37.93 3.84
813 976 4.530857 GTGAGCCGGGTCGATGGG 62.531 72.222 27.33 0.00 0.00 4.00
815 978 4.530857 GGGTGAGCCGGGTCGATG 62.531 72.222 27.33 0.00 34.97 3.84
859 1022 4.508128 CGGGTGGACGGACGGATG 62.508 72.222 0.00 0.00 0.00 3.51
960 1132 5.046231 GCTATATGAGAGGGTTAAAGAGGGG 60.046 48.000 0.00 0.00 0.00 4.79
1050 1230 3.382803 CGATCGCTCGCTCGCTTC 61.383 66.667 0.26 0.00 38.20 3.86
1051 1231 3.798639 CTCGATCGCTCGCTCGCTT 62.799 63.158 11.09 0.00 44.65 4.68
1052 1232 4.306471 CTCGATCGCTCGCTCGCT 62.306 66.667 11.09 0.00 44.65 4.93
1054 1234 4.306471 AGCTCGATCGCTCGCTCG 62.306 66.667 11.09 8.92 44.65 5.03
1055 1235 2.426752 GAGCTCGATCGCTCGCTC 60.427 66.667 26.18 26.18 45.91 5.03
1606 1790 9.736414 CAAAGAAGTGAATGGATATCAGGATAT 57.264 33.333 4.83 1.51 36.75 1.63
1607 1791 8.717717 ACAAAGAAGTGAATGGATATCAGGATA 58.282 33.333 4.83 0.00 0.00 2.59
1608 1792 7.501559 CACAAAGAAGTGAATGGATATCAGGAT 59.498 37.037 4.83 0.00 42.05 3.24
1609 1793 6.825213 CACAAAGAAGTGAATGGATATCAGGA 59.175 38.462 4.83 0.00 42.05 3.86
1610 1794 6.600822 ACACAAAGAAGTGAATGGATATCAGG 59.399 38.462 4.83 0.00 42.05 3.86
1613 1797 6.599244 TGGACACAAAGAAGTGAATGGATATC 59.401 38.462 0.57 0.00 42.05 1.63
1620 1804 5.278660 GCTTGATGGACACAAAGAAGTGAAT 60.279 40.000 0.57 0.00 42.05 2.57
1630 1814 0.251297 CCAGGGCTTGATGGACACAA 60.251 55.000 0.00 0.00 39.02 3.33
1631 1815 1.133181 TCCAGGGCTTGATGGACACA 61.133 55.000 0.00 0.00 40.70 3.72
1648 1832 8.438676 TTTAATTTAAGCTGCTAGAGTGATCC 57.561 34.615 0.90 0.00 0.00 3.36
1681 1899 6.652900 TCACCTAAATTGTTGTTCATGATCGA 59.347 34.615 0.00 0.00 0.00 3.59
1683 1901 6.749118 GCTCACCTAAATTGTTGTTCATGATC 59.251 38.462 0.00 0.00 0.00 2.92
1684 1902 6.623549 CGCTCACCTAAATTGTTGTTCATGAT 60.624 38.462 0.00 0.00 0.00 2.45
1687 1905 4.082787 CCGCTCACCTAAATTGTTGTTCAT 60.083 41.667 0.00 0.00 0.00 2.57
1688 1906 3.252215 CCGCTCACCTAAATTGTTGTTCA 59.748 43.478 0.00 0.00 0.00 3.18
1689 1907 3.821841 CCGCTCACCTAAATTGTTGTTC 58.178 45.455 0.00 0.00 0.00 3.18
1690 1908 2.030274 GCCGCTCACCTAAATTGTTGTT 60.030 45.455 0.00 0.00 0.00 2.83
1777 1995 0.465642 GCTCGGAAATTGGGTAGGGG 60.466 60.000 0.00 0.00 0.00 4.79
1786 2004 0.693049 AGTCACCTGGCTCGGAAATT 59.307 50.000 0.00 0.00 0.00 1.82
1789 2007 0.606604 GTTAGTCACCTGGCTCGGAA 59.393 55.000 0.00 0.00 0.00 4.30
1808 2027 4.499357 GGCATCAACCGGTAGAGTAAGTAG 60.499 50.000 8.00 0.00 0.00 2.57
1821 2040 0.893270 TGGTTCCTTGGCATCAACCG 60.893 55.000 14.54 0.00 41.17 4.44
1878 2097 7.491048 TGATCATCATCAAATTCATGTTGCTTG 59.509 33.333 0.00 0.00 35.99 4.01
1879 2098 7.552459 TGATCATCATCAAATTCATGTTGCTT 58.448 30.769 0.00 0.00 35.99 3.91
1902 2121 2.032528 CCACTTTGCGCTCCCTGA 59.967 61.111 9.73 0.00 0.00 3.86
2663 2985 1.065358 CGACGGCGAATAGTTGTTGT 58.935 50.000 16.62 0.00 40.82 3.32
2664 2986 0.247145 GCGACGGCGAATAGTTGTTG 60.247 55.000 18.90 0.00 40.82 3.33
2665 2987 1.356527 GGCGACGGCGAATAGTTGTT 61.357 55.000 18.90 0.00 41.24 2.83
2690 3012 3.681961 AAATGTTCATGGCGCGGCG 62.682 57.895 28.22 19.62 0.00 6.46
2691 3013 1.873572 GAAATGTTCATGGCGCGGC 60.874 57.895 27.61 27.61 0.00 6.53
2692 3014 0.523968 CAGAAATGTTCATGGCGCGG 60.524 55.000 8.83 0.00 0.00 6.46
2693 3015 0.447406 TCAGAAATGTTCATGGCGCG 59.553 50.000 0.00 0.00 0.00 6.86
2694 3016 2.097954 TGATCAGAAATGTTCATGGCGC 59.902 45.455 0.00 0.00 0.00 6.53
2728 3052 1.686355 CTCGTACTCCCTCTGCTCAT 58.314 55.000 0.00 0.00 0.00 2.90
2798 3122 1.048724 TCATGATCCACCCCTCGTCC 61.049 60.000 0.00 0.00 0.00 4.79
2801 3125 0.107456 CCTTCATGATCCACCCCTCG 59.893 60.000 0.00 0.00 0.00 4.63
3022 3346 1.324736 GCATTTACGACGAAGCTCTGG 59.675 52.381 0.00 0.00 0.00 3.86
3042 3366 3.788797 GCAAGAAACGTTGTGAGTTCTGG 60.789 47.826 0.00 0.00 0.00 3.86
3052 3377 3.557595 AGAAGAGTGAGCAAGAAACGTTG 59.442 43.478 0.00 0.00 0.00 4.10
3070 3395 1.135286 GCCGGCCAAAATTCAGAGAAG 60.135 52.381 18.11 0.00 0.00 2.85
3071 3396 0.887933 GCCGGCCAAAATTCAGAGAA 59.112 50.000 18.11 0.00 0.00 2.87
3312 3637 6.934083 TGAAGTGTGATTGAACTGTATAGCAA 59.066 34.615 0.00 0.00 0.00 3.91
3313 3638 6.368791 GTGAAGTGTGATTGAACTGTATAGCA 59.631 38.462 0.00 0.00 0.00 3.49
3314 3639 6.368791 TGTGAAGTGTGATTGAACTGTATAGC 59.631 38.462 0.00 0.00 0.00 2.97
3327 3663 5.278463 GCAAAATGTAGGTGTGAAGTGTGAT 60.278 40.000 0.00 0.00 0.00 3.06
3328 3664 4.036262 GCAAAATGTAGGTGTGAAGTGTGA 59.964 41.667 0.00 0.00 0.00 3.58
3329 3665 4.202000 TGCAAAATGTAGGTGTGAAGTGTG 60.202 41.667 0.00 0.00 0.00 3.82
3330 3666 3.951037 TGCAAAATGTAGGTGTGAAGTGT 59.049 39.130 0.00 0.00 0.00 3.55
3331 3667 4.566545 TGCAAAATGTAGGTGTGAAGTG 57.433 40.909 0.00 0.00 0.00 3.16
3332 3668 6.003950 ACTATGCAAAATGTAGGTGTGAAGT 58.996 36.000 0.00 0.00 0.00 3.01
3348 3684 4.281941 CCATGGCTCTACTAGACTATGCAA 59.718 45.833 0.00 0.00 32.57 4.08
3394 3731 3.136763 CCCCTTCATGTTGATCTGATCG 58.863 50.000 12.65 0.00 0.00 3.69
3484 3827 3.043999 GCCGCTGGGAGGGTTGTAT 62.044 63.158 0.00 0.00 34.06 2.29
3601 3992 3.851098 CTTCCTCTGAAACTTACCTCCG 58.149 50.000 0.00 0.00 0.00 4.63
3617 4008 2.700897 AGTACTTCAGTGTGTGCTTCCT 59.299 45.455 0.00 0.00 0.00 3.36
3634 4025 6.334202 TGAACCAAAACCAAATGTTCAGTAC 58.666 36.000 0.00 0.00 40.06 2.73
3635 4026 6.531503 TGAACCAAAACCAAATGTTCAGTA 57.468 33.333 0.00 0.00 40.06 2.74
3636 4027 5.413309 TGAACCAAAACCAAATGTTCAGT 57.587 34.783 0.00 0.00 40.06 3.41
3638 4029 5.413309 ACTGAACCAAAACCAAATGTTCA 57.587 34.783 0.00 0.00 41.99 3.18
3640 4031 4.429108 CGACTGAACCAAAACCAAATGTT 58.571 39.130 0.00 0.00 39.43 2.71
3641 4032 3.736740 GCGACTGAACCAAAACCAAATGT 60.737 43.478 0.00 0.00 0.00 2.71
3642 4033 2.794350 GCGACTGAACCAAAACCAAATG 59.206 45.455 0.00 0.00 0.00 2.32
3643 4034 2.693074 AGCGACTGAACCAAAACCAAAT 59.307 40.909 0.00 0.00 0.00 2.32
3652 4043 2.230508 CCTGTACTAAGCGACTGAACCA 59.769 50.000 0.00 0.00 0.00 3.67
3699 4090 1.822114 TTGTCGCCGTCCATTCCTGA 61.822 55.000 0.00 0.00 0.00 3.86
3919 4330 3.496130 AGTTGTCTGAAGTGATCTTTGCG 59.504 43.478 0.00 0.00 33.64 4.85
3921 4332 5.049818 GTGGAGTTGTCTGAAGTGATCTTTG 60.050 44.000 0.00 0.00 33.64 2.77
3922 4333 5.059833 GTGGAGTTGTCTGAAGTGATCTTT 58.940 41.667 0.00 0.00 33.64 2.52
3923 4334 4.101585 TGTGGAGTTGTCTGAAGTGATCTT 59.898 41.667 0.00 0.00 36.51 2.40
3925 4336 3.995199 TGTGGAGTTGTCTGAAGTGATC 58.005 45.455 0.00 0.00 0.00 2.92
3926 4337 4.321718 CATGTGGAGTTGTCTGAAGTGAT 58.678 43.478 0.00 0.00 0.00 3.06
3927 4338 3.494924 CCATGTGGAGTTGTCTGAAGTGA 60.495 47.826 0.00 0.00 37.39 3.41
3966 4381 3.256383 TCATGCCAGGAACAACAAATCAG 59.744 43.478 0.00 0.00 0.00 2.90
3971 4386 2.299582 CCATTCATGCCAGGAACAACAA 59.700 45.455 0.00 0.00 0.00 2.83
3975 4390 2.601240 TTCCATTCATGCCAGGAACA 57.399 45.000 0.00 0.00 35.35 3.18
3976 4391 2.101917 CCATTCCATTCATGCCAGGAAC 59.898 50.000 12.71 0.00 42.42 3.62
3978 4393 1.288633 ACCATTCCATTCATGCCAGGA 59.711 47.619 0.00 0.00 0.00 3.86
3980 4395 1.202486 GCACCATTCCATTCATGCCAG 60.202 52.381 0.00 0.00 0.00 4.85
3983 4398 1.805120 GCTGCACCATTCCATTCATGC 60.805 52.381 0.00 0.00 0.00 4.06
3984 4399 1.754803 AGCTGCACCATTCCATTCATG 59.245 47.619 1.02 0.00 0.00 3.07
3985 4400 1.754803 CAGCTGCACCATTCCATTCAT 59.245 47.619 0.00 0.00 0.00 2.57
3986 4401 1.179152 CAGCTGCACCATTCCATTCA 58.821 50.000 0.00 0.00 0.00 2.57
3990 4405 2.036098 CCCAGCTGCACCATTCCA 59.964 61.111 8.66 0.00 0.00 3.53
3991 4406 2.757099 CCCCAGCTGCACCATTCC 60.757 66.667 8.66 0.00 0.00 3.01
4379 5008 1.282157 AGGAGGACGAATGGGGAAAAG 59.718 52.381 0.00 0.00 0.00 2.27
4391 5020 2.741486 TTTTGGCGGGAAGGAGGACG 62.741 60.000 0.00 0.00 0.00 4.79
4433 5062 1.273886 ACAACACACACCACAAAACCC 59.726 47.619 0.00 0.00 0.00 4.11
4447 5076 4.002037 GCAGCAGCAACACAACAC 57.998 55.556 0.00 0.00 41.58 3.32
4622 5251 2.611800 AGCAGGCCCTGGATGACA 60.612 61.111 13.78 0.00 31.21 3.58
4694 5323 1.134281 GAACTCGTCGTCCTCGTCC 59.866 63.158 0.00 0.00 38.33 4.79
5059 5691 5.316167 TGCACAATGTCCAGAGTTCTTAAT 58.684 37.500 0.00 0.00 0.00 1.40
5066 5698 2.092753 CCCTATGCACAATGTCCAGAGT 60.093 50.000 0.00 0.00 0.00 3.24
5067 5699 2.171237 TCCCTATGCACAATGTCCAGAG 59.829 50.000 0.00 0.00 0.00 3.35
5072 5704 4.142609 TCTTCTCCCTATGCACAATGTC 57.857 45.455 0.00 0.00 0.00 3.06
5074 5706 4.264253 TGTTCTTCTCCCTATGCACAATG 58.736 43.478 0.00 0.00 0.00 2.82
5194 5826 1.002134 ACATCCAAAGTCTGGCCCG 60.002 57.895 0.00 0.00 45.98 6.13
5197 5829 2.421424 GACATGACATCCAAAGTCTGGC 59.579 50.000 0.00 0.00 45.98 4.85
5211 5843 5.112220 TGTTCATTCTTGCTTGACATGAC 57.888 39.130 0.00 0.00 32.53 3.06
5212 5844 4.320714 GCTGTTCATTCTTGCTTGACATGA 60.321 41.667 0.00 0.00 0.00 3.07
5213 5845 3.918591 GCTGTTCATTCTTGCTTGACATG 59.081 43.478 0.00 0.00 0.00 3.21
5214 5846 3.570975 TGCTGTTCATTCTTGCTTGACAT 59.429 39.130 0.00 0.00 0.00 3.06
5215 5847 2.950975 TGCTGTTCATTCTTGCTTGACA 59.049 40.909 0.00 0.00 0.00 3.58
5244 5876 5.507817 CCACAAGAGCAATCACAGCTAAAAA 60.508 40.000 0.00 0.00 43.58 1.94
5301 5934 5.642063 TGCACCTGTTTTAGTTAGCTACATC 59.358 40.000 0.00 0.00 0.00 3.06
5312 5945 8.419076 AAAACAAGTAAATGCACCTGTTTTAG 57.581 30.769 13.67 0.00 44.92 1.85
5313 5946 8.254508 AGAAAACAAGTAAATGCACCTGTTTTA 58.745 29.630 14.63 1.08 45.91 1.52
5338 5971 5.239306 TGCCACTCTTCAACTTTACATTCAG 59.761 40.000 0.00 0.00 0.00 3.02
5343 5976 5.129634 TGAATGCCACTCTTCAACTTTACA 58.870 37.500 0.00 0.00 0.00 2.41
5352 5985 1.736681 GCAGTCTGAATGCCACTCTTC 59.263 52.381 18.52 0.00 37.73 2.87
5359 5992 2.627515 TATCCTGCAGTCTGAATGCC 57.372 50.000 25.01 9.61 43.18 4.40
5402 6035 3.974222 GCTGCTGCAAGGTCTTTTT 57.026 47.368 11.11 0.00 39.41 1.94
5419 6137 0.390472 ACCTGTCTAAAGCGCTCTGC 60.390 55.000 12.06 0.00 46.98 4.26
5424 6142 1.135944 GCAAGAACCTGTCTAAAGCGC 60.136 52.381 0.00 0.00 34.56 5.92
5426 6144 4.393371 CCTAAGCAAGAACCTGTCTAAAGC 59.607 45.833 0.00 0.00 34.56 3.51
5431 6149 5.307196 TCTTTACCTAAGCAAGAACCTGTCT 59.693 40.000 0.00 0.00 34.02 3.41
5432 6150 5.548406 TCTTTACCTAAGCAAGAACCTGTC 58.452 41.667 0.00 0.00 33.66 3.51
5433 6151 5.552178 CTCTTTACCTAAGCAAGAACCTGT 58.448 41.667 0.00 0.00 33.66 4.00
5434 6152 4.393371 GCTCTTTACCTAAGCAAGAACCTG 59.607 45.833 0.00 0.00 36.06 4.00
5438 6156 3.618997 CGGGCTCTTTACCTAAGCAAGAA 60.619 47.826 0.00 0.00 37.78 2.52
5439 6157 2.093658 CGGGCTCTTTACCTAAGCAAGA 60.094 50.000 0.00 0.00 37.78 3.02
5440 6158 2.093658 TCGGGCTCTTTACCTAAGCAAG 60.094 50.000 0.00 0.00 37.78 4.01
5441 6159 1.903860 TCGGGCTCTTTACCTAAGCAA 59.096 47.619 0.00 0.00 37.78 3.91
5442 6160 1.480954 CTCGGGCTCTTTACCTAAGCA 59.519 52.381 0.00 0.00 37.78 3.91
5443 6161 1.481363 ACTCGGGCTCTTTACCTAAGC 59.519 52.381 0.00 0.00 33.66 3.09
5444 6162 2.738964 GCACTCGGGCTCTTTACCTAAG 60.739 54.545 0.00 0.00 35.04 2.18
5445 6163 1.206371 GCACTCGGGCTCTTTACCTAA 59.794 52.381 0.00 0.00 0.00 2.69
5446 6164 0.822164 GCACTCGGGCTCTTTACCTA 59.178 55.000 0.00 0.00 0.00 3.08
5447 6165 1.597461 GCACTCGGGCTCTTTACCT 59.403 57.895 0.00 0.00 0.00 3.08
5448 6166 1.449778 GGCACTCGGGCTCTTTACC 60.450 63.158 0.00 0.00 39.42 2.85
5449 6167 0.321298 TTGGCACTCGGGCTCTTTAC 60.321 55.000 0.00 0.00 43.83 2.01
5450 6168 0.036388 CTTGGCACTCGGGCTCTTTA 60.036 55.000 0.00 0.00 43.83 1.85
5451 6169 1.302832 CTTGGCACTCGGGCTCTTT 60.303 57.895 0.00 0.00 43.83 2.52
5452 6170 2.348998 CTTGGCACTCGGGCTCTT 59.651 61.111 0.00 0.00 43.83 2.85
5453 6171 3.710722 CCTTGGCACTCGGGCTCT 61.711 66.667 0.00 0.00 43.83 4.09
5454 6172 4.785453 CCCTTGGCACTCGGGCTC 62.785 72.222 3.06 0.00 43.83 4.70
5457 6175 3.406595 GATCCCCTTGGCACTCGGG 62.407 68.421 8.38 8.38 38.06 5.14
5458 6176 1.048724 TAGATCCCCTTGGCACTCGG 61.049 60.000 0.00 0.00 0.00 4.63
5459 6177 0.830648 TTAGATCCCCTTGGCACTCG 59.169 55.000 0.00 0.00 0.00 4.18
5460 6178 3.137360 AGATTTAGATCCCCTTGGCACTC 59.863 47.826 0.00 0.00 32.44 3.51
5461 6179 3.126453 AGATTTAGATCCCCTTGGCACT 58.874 45.455 0.00 0.00 32.44 4.40
5462 6180 3.584733 AGATTTAGATCCCCTTGGCAC 57.415 47.619 0.00 0.00 32.44 5.01
5463 6181 5.930209 ATTAGATTTAGATCCCCTTGGCA 57.070 39.130 0.00 0.00 32.44 4.92
5464 6182 6.779860 TGTATTAGATTTAGATCCCCTTGGC 58.220 40.000 0.00 0.00 32.44 4.52
5465 6183 7.978925 ACTGTATTAGATTTAGATCCCCTTGG 58.021 38.462 0.00 0.00 32.44 3.61
5469 6187 9.804758 CGAATACTGTATTAGATTTAGATCCCC 57.195 37.037 12.73 0.00 32.44 4.81
5515 6233 3.632145 GGTTTGGTTGATATCGGAATGCT 59.368 43.478 0.00 0.00 0.00 3.79
5516 6234 3.380004 TGGTTTGGTTGATATCGGAATGC 59.620 43.478 0.00 0.00 0.00 3.56
5517 6235 4.202010 GGTGGTTTGGTTGATATCGGAATG 60.202 45.833 0.00 0.00 0.00 2.67
5518 6236 3.951680 GGTGGTTTGGTTGATATCGGAAT 59.048 43.478 0.00 0.00 0.00 3.01
5519 6237 3.244946 TGGTGGTTTGGTTGATATCGGAA 60.245 43.478 0.00 0.00 0.00 4.30
5520 6238 2.306219 TGGTGGTTTGGTTGATATCGGA 59.694 45.455 0.00 0.00 0.00 4.55
5521 6239 2.422127 GTGGTGGTTTGGTTGATATCGG 59.578 50.000 0.00 0.00 0.00 4.18
5523 6241 4.331968 TCTGTGGTGGTTTGGTTGATATC 58.668 43.478 0.00 0.00 0.00 1.63
5524 6242 4.335416 CTCTGTGGTGGTTTGGTTGATAT 58.665 43.478 0.00 0.00 0.00 1.63
5525 6243 3.497763 CCTCTGTGGTGGTTTGGTTGATA 60.498 47.826 0.00 0.00 0.00 2.15
5527 6245 1.409521 CCTCTGTGGTGGTTTGGTTGA 60.410 52.381 0.00 0.00 0.00 3.18
5528 6246 1.032014 CCTCTGTGGTGGTTTGGTTG 58.968 55.000 0.00 0.00 0.00 3.77
5529 6247 3.513209 CCTCTGTGGTGGTTTGGTT 57.487 52.632 0.00 0.00 0.00 3.67
5541 6259 4.284490 TCTGCTCTAAAATGACACCTCTGT 59.716 41.667 0.00 0.00 0.00 3.41
5542 6260 4.825422 TCTGCTCTAAAATGACACCTCTG 58.175 43.478 0.00 0.00 0.00 3.35
5543 6261 5.690464 ATCTGCTCTAAAATGACACCTCT 57.310 39.130 0.00 0.00 0.00 3.69
5544 6262 7.849804 TTTATCTGCTCTAAAATGACACCTC 57.150 36.000 0.00 0.00 0.00 3.85
5545 6263 8.814038 AATTTATCTGCTCTAAAATGACACCT 57.186 30.769 0.00 0.00 0.00 4.00
5555 6273 8.840321 GGAATGCTGTTAATTTATCTGCTCTAA 58.160 33.333 13.90 0.14 0.00 2.10
5556 6274 7.992608 TGGAATGCTGTTAATTTATCTGCTCTA 59.007 33.333 13.90 4.12 0.00 2.43
5557 6275 6.830324 TGGAATGCTGTTAATTTATCTGCTCT 59.170 34.615 13.90 5.05 0.00 4.09
5558 6276 6.914757 GTGGAATGCTGTTAATTTATCTGCTC 59.085 38.462 13.90 7.16 0.00 4.26
5559 6277 6.377996 TGTGGAATGCTGTTAATTTATCTGCT 59.622 34.615 13.90 0.45 0.00 4.24
5560 6278 6.563422 TGTGGAATGCTGTTAATTTATCTGC 58.437 36.000 8.58 8.58 0.00 4.26
5561 6279 9.590451 AATTGTGGAATGCTGTTAATTTATCTG 57.410 29.630 0.00 0.00 0.00 2.90
5562 6280 9.807649 GAATTGTGGAATGCTGTTAATTTATCT 57.192 29.630 0.00 0.00 0.00 1.98
5563 6281 9.585099 TGAATTGTGGAATGCTGTTAATTTATC 57.415 29.630 0.00 0.00 0.00 1.75
5564 6282 9.941325 TTGAATTGTGGAATGCTGTTAATTTAT 57.059 25.926 0.00 0.00 0.00 1.40
5565 6283 9.770097 TTTGAATTGTGGAATGCTGTTAATTTA 57.230 25.926 0.00 0.00 0.00 1.40
5566 6284 8.674263 TTTGAATTGTGGAATGCTGTTAATTT 57.326 26.923 0.00 0.00 0.00 1.82
5567 6285 8.149647 TCTTTGAATTGTGGAATGCTGTTAATT 58.850 29.630 0.00 0.00 0.00 1.40
5568 6286 7.599998 GTCTTTGAATTGTGGAATGCTGTTAAT 59.400 33.333 0.00 0.00 0.00 1.40
5569 6287 6.922957 GTCTTTGAATTGTGGAATGCTGTTAA 59.077 34.615 0.00 0.00 0.00 2.01
5570 6288 6.265196 AGTCTTTGAATTGTGGAATGCTGTTA 59.735 34.615 0.00 0.00 0.00 2.41
5571 6289 5.069516 AGTCTTTGAATTGTGGAATGCTGTT 59.930 36.000 0.00 0.00 0.00 3.16
5572 6290 4.586001 AGTCTTTGAATTGTGGAATGCTGT 59.414 37.500 0.00 0.00 0.00 4.40
5573 6291 5.130292 AGTCTTTGAATTGTGGAATGCTG 57.870 39.130 0.00 0.00 0.00 4.41
5574 6292 5.796424 AAGTCTTTGAATTGTGGAATGCT 57.204 34.783 0.00 0.00 0.00 3.79
5575 6293 7.370383 TCTAAAGTCTTTGAATTGTGGAATGC 58.630 34.615 8.14 0.00 0.00 3.56
5576 6294 9.403110 CTTCTAAAGTCTTTGAATTGTGGAATG 57.597 33.333 8.14 0.00 0.00 2.67
5577 6295 8.084684 GCTTCTAAAGTCTTTGAATTGTGGAAT 58.915 33.333 8.14 0.00 0.00 3.01
5578 6296 7.068103 TGCTTCTAAAGTCTTTGAATTGTGGAA 59.932 33.333 8.14 0.00 0.00 3.53
5579 6297 6.545666 TGCTTCTAAAGTCTTTGAATTGTGGA 59.454 34.615 8.14 0.00 0.00 4.02
5580 6298 6.738114 TGCTTCTAAAGTCTTTGAATTGTGG 58.262 36.000 8.14 0.62 0.00 4.17
5581 6299 7.642669 TCTGCTTCTAAAGTCTTTGAATTGTG 58.357 34.615 8.14 0.91 0.00 3.33
5582 6300 7.807977 TCTGCTTCTAAAGTCTTTGAATTGT 57.192 32.000 8.14 0.00 0.00 2.71
5583 6301 9.339492 GATTCTGCTTCTAAAGTCTTTGAATTG 57.661 33.333 8.14 1.76 0.00 2.32
5584 6302 8.518702 GGATTCTGCTTCTAAAGTCTTTGAATT 58.481 33.333 8.14 0.00 0.00 2.17
5585 6303 7.121907 GGGATTCTGCTTCTAAAGTCTTTGAAT 59.878 37.037 8.14 6.34 0.00 2.57
5586 6304 6.431234 GGGATTCTGCTTCTAAAGTCTTTGAA 59.569 38.462 8.14 8.54 0.00 2.69
5587 6305 5.940470 GGGATTCTGCTTCTAAAGTCTTTGA 59.060 40.000 8.14 1.33 0.00 2.69
5588 6306 5.163814 CGGGATTCTGCTTCTAAAGTCTTTG 60.164 44.000 8.14 0.00 0.00 2.77
5589 6307 4.938226 CGGGATTCTGCTTCTAAAGTCTTT 59.062 41.667 2.81 2.81 0.00 2.52
5590 6308 4.223032 TCGGGATTCTGCTTCTAAAGTCTT 59.777 41.667 0.00 0.00 0.00 3.01
5591 6309 3.769844 TCGGGATTCTGCTTCTAAAGTCT 59.230 43.478 0.00 0.00 0.00 3.24
5592 6310 4.124851 TCGGGATTCTGCTTCTAAAGTC 57.875 45.455 0.00 0.00 0.00 3.01
5593 6311 4.762289 ATCGGGATTCTGCTTCTAAAGT 57.238 40.909 0.00 0.00 0.00 2.66
5594 6312 6.459066 TGATATCGGGATTCTGCTTCTAAAG 58.541 40.000 0.00 0.00 0.00 1.85
5595 6313 6.419484 TGATATCGGGATTCTGCTTCTAAA 57.581 37.500 0.00 0.00 0.00 1.85
5596 6314 6.223852 GTTGATATCGGGATTCTGCTTCTAA 58.776 40.000 0.00 0.00 0.00 2.10
5597 6315 5.279506 GGTTGATATCGGGATTCTGCTTCTA 60.280 44.000 0.00 0.00 0.00 2.10
5598 6316 4.503991 GGTTGATATCGGGATTCTGCTTCT 60.504 45.833 0.00 0.00 0.00 2.85
5609 6327 2.021457 GGTGGTTTGGTTGATATCGGG 58.979 52.381 0.00 0.00 0.00 5.14
5611 6329 3.078097 TGTGGTGGTTTGGTTGATATCG 58.922 45.455 0.00 0.00 0.00 2.92
5618 6336 3.513209 CCTCTGTGGTGGTTTGGTT 57.487 52.632 0.00 0.00 0.00 3.67
5633 6363 8.910351 ATTTATCTACTCTAAAATGGCACCTC 57.090 34.615 0.00 0.00 0.00 3.85
5652 6382 7.035004 TGCTGTTGGATTGCTGTTAATTTATC 58.965 34.615 0.00 0.00 0.00 1.75
5659 6389 2.954989 TGTTGCTGTTGGATTGCTGTTA 59.045 40.909 0.00 0.00 0.00 2.41
5663 6393 2.241160 TCATGTTGCTGTTGGATTGCT 58.759 42.857 0.00 0.00 0.00 3.91
5674 6404 6.542005 TCAATCGTACCAATATTCATGTTGCT 59.458 34.615 0.00 0.00 0.00 3.91
5676 6406 8.141835 TCTCAATCGTACCAATATTCATGTTG 57.858 34.615 0.00 0.00 0.00 3.33
5683 6413 5.926542 CGGACATCTCAATCGTACCAATATT 59.073 40.000 0.00 0.00 0.00 1.28
5696 6426 4.545208 TTGGTGATTACGGACATCTCAA 57.455 40.909 0.00 0.00 0.00 3.02
5703 6433 3.119637 CCCATTGTTTGGTGATTACGGAC 60.120 47.826 0.00 0.00 44.83 4.79
5705 6435 2.165437 CCCCATTGTTTGGTGATTACGG 59.835 50.000 0.00 0.00 44.83 4.02
5706 6436 2.823154 ACCCCATTGTTTGGTGATTACG 59.177 45.455 0.00 0.00 44.83 3.18
5707 6437 4.562552 CCAACCCCATTGTTTGGTGATTAC 60.563 45.833 0.00 0.00 44.83 1.89
5708 6438 3.580458 CCAACCCCATTGTTTGGTGATTA 59.420 43.478 0.00 0.00 44.83 1.75
5709 6439 2.371510 CCAACCCCATTGTTTGGTGATT 59.628 45.455 0.00 0.00 44.83 2.57
5710 6440 1.977129 CCAACCCCATTGTTTGGTGAT 59.023 47.619 0.00 0.00 44.83 3.06
5734 6464 0.952984 GCTGTGCTCTCTTGTCACCC 60.953 60.000 0.00 0.00 0.00 4.61
5784 6515 6.794534 ACTGAAAGGTATTGATTCTCCCTTT 58.205 36.000 0.00 0.00 45.63 3.11
5794 6525 7.928873 AGGGAAAAGATACTGAAAGGTATTGA 58.071 34.615 0.00 0.00 39.30 2.57
5844 6575 6.765989 CCACTGTATTCTTTTGATATCCGGAA 59.234 38.462 9.01 0.00 0.00 4.30
5859 6590 6.424032 ACCCCTATTCTTTTCCACTGTATTC 58.576 40.000 0.00 0.00 0.00 1.75
5882 6613 9.117183 TCTTTTAGTTTCTTTTTGAGGGTAGAC 57.883 33.333 0.00 0.00 0.00 2.59
5883 6614 9.689501 TTCTTTTAGTTTCTTTTTGAGGGTAGA 57.310 29.630 0.00 0.00 0.00 2.59
5891 6622 7.069455 TCTCCCCCTTCTTTTAGTTTCTTTTTG 59.931 37.037 0.00 0.00 0.00 2.44
5892 6623 7.130099 TCTCCCCCTTCTTTTAGTTTCTTTTT 58.870 34.615 0.00 0.00 0.00 1.94
5909 6640 1.537478 TTCTAGCCCCTTCTCCCCCT 61.537 60.000 0.00 0.00 0.00 4.79
5917 6648 4.503296 CGTATAGTGCATTTCTAGCCCCTT 60.503 45.833 0.00 0.00 0.00 3.95
5929 6665 4.145365 TGGCTTTTACCGTATAGTGCAT 57.855 40.909 0.00 0.00 0.00 3.96
5939 6675 3.186817 TCGTGTGTAAATGGCTTTTACCG 59.813 43.478 24.65 21.23 46.08 4.02
5940 6676 4.379082 CCTCGTGTGTAAATGGCTTTTACC 60.379 45.833 24.65 18.42 46.08 2.85
5941 6677 4.453136 TCCTCGTGTGTAAATGGCTTTTAC 59.547 41.667 22.30 22.30 46.59 2.01
5942 6678 4.643463 TCCTCGTGTGTAAATGGCTTTTA 58.357 39.130 1.77 1.77 0.00 1.52
5943 6679 3.482436 TCCTCGTGTGTAAATGGCTTTT 58.518 40.909 3.72 3.72 0.00 2.27
5944 6680 3.074412 CTCCTCGTGTGTAAATGGCTTT 58.926 45.455 0.00 0.00 0.00 3.51
5945 6681 2.301870 TCTCCTCGTGTGTAAATGGCTT 59.698 45.455 0.00 0.00 0.00 4.35
5946 6682 1.899814 TCTCCTCGTGTGTAAATGGCT 59.100 47.619 0.00 0.00 0.00 4.75
5989 6729 4.450976 TGTGCAGATAACAACTCACAGTT 58.549 39.130 0.00 0.00 39.39 3.16
6028 6769 5.398012 GGAAGAGTATTAAACATCCCCTGCT 60.398 44.000 0.00 0.00 0.00 4.24
6051 6793 8.263940 TCCGTAGAGAAGAAATAACAAAATGG 57.736 34.615 0.00 0.00 0.00 3.16
6132 6874 8.361139 CGATACCAATCTTCTTGAATAGGTACT 58.639 37.037 0.00 0.00 46.37 2.73


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.