Multiple sequence alignment - TraesCS5A01G221900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G221900 chr5A 100.000 3945 0 0 1 3945 438157024 438153080 0.000000e+00 7286
1 TraesCS5A01G221900 chr5B 89.900 2792 124 51 255 3025 394984745 394982091 0.000000e+00 3448
2 TraesCS5A01G221900 chr5B 91.667 228 6 3 3730 3945 394981837 394981611 1.780000e-78 303
3 TraesCS5A01G221900 chr5B 83.444 302 37 8 3419 3717 457338416 457338125 6.500000e-68 268
4 TraesCS5A01G221900 chr5B 82.724 301 42 7 3420 3717 461582675 461582968 3.910000e-65 259
5 TraesCS5A01G221900 chr5B 88.542 192 11 2 3068 3248 394982073 394981882 5.130000e-54 222
6 TraesCS5A01G221900 chr5D 94.275 1869 76 9 1163 3025 336777895 336776052 0.000000e+00 2830
7 TraesCS5A01G221900 chr5D 88.126 699 31 21 40 731 336781103 336780450 0.000000e+00 784
8 TraesCS5A01G221900 chr5D 92.997 357 3 8 795 1133 336778223 336777871 5.890000e-138 501
9 TraesCS5A01G221900 chr5D 91.250 240 8 4 3718 3945 336775776 336775538 8.230000e-82 315
10 TraesCS5A01G221900 chr5D 85.714 231 18 7 3068 3286 336776033 336775806 3.070000e-56 230
11 TraesCS5A01G221900 chr3A 90.244 328 23 3 1632 1953 695949812 695950136 1.700000e-113 420
12 TraesCS5A01G221900 chr7A 88.415 328 29 3 1632 1953 660037773 660037449 1.720000e-103 387
13 TraesCS5A01G221900 chr6A 85.404 322 34 9 1632 1953 420599153 420599461 4.920000e-84 322
14 TraesCS5A01G221900 chr1B 84.262 305 36 8 3419 3718 263981378 263981675 1.790000e-73 287
15 TraesCS5A01G221900 chr1A 83.882 304 38 7 3419 3718 212016632 212016336 3.000000e-71 279
16 TraesCS5A01G221900 chr3D 79.535 430 54 18 3313 3718 384530324 384530743 3.880000e-70 276
17 TraesCS5A01G221900 chr6D 82.581 310 39 14 3419 3718 460563698 460563394 3.910000e-65 259
18 TraesCS5A01G221900 chr2D 82.609 299 45 7 3421 3715 484477887 484477592 1.410000e-64 257
19 TraesCS5A01G221900 chr4A 82.353 306 43 11 3419 3719 685789142 685789441 5.060000e-64 255
20 TraesCS5A01G221900 chr3B 82.119 302 47 7 3419 3718 151119187 151119483 6.540000e-63 252
21 TraesCS5A01G221900 chr7B 93.617 94 6 0 1860 1953 23419035 23419128 1.480000e-29 141


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G221900 chr5A 438153080 438157024 3944 True 7286.000000 7286 100.000000 1 3945 1 chr5A.!!$R1 3944
1 TraesCS5A01G221900 chr5B 394981611 394984745 3134 True 1324.333333 3448 90.036333 255 3945 3 chr5B.!!$R2 3690
2 TraesCS5A01G221900 chr5D 336775538 336781103 5565 True 932.000000 2830 90.472400 40 3945 5 chr5D.!!$R1 3905

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
79 80 0.035725 TCTGTCAGAGGCCAGCAATG 60.036 55.0 5.01 0.0 0.00 2.82 F
509 518 0.038709 GTGAGCGAGTGAGTGAAGCT 60.039 55.0 0.00 0.0 41.29 3.74 F
1313 3531 0.113776 TTGACCGACTCCTACTGGGT 59.886 55.0 0.00 0.0 36.25 4.51 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1074 3291 0.178995 TTGACCTCAGGCAATGCACA 60.179 50.0 7.79 0.0 0.0 4.57 R
1331 3549 0.249238 GAAACGCCACCAAATGCACA 60.249 50.0 0.00 0.0 0.0 4.57 R
3295 5540 0.107508 ATTGCACGACCCCTCTCATG 60.108 55.0 0.00 0.0 0.0 3.07 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
28 29 2.434359 CCGAAGTGGGTTCCTCGC 60.434 66.667 0.00 0.00 0.00 5.03
29 30 2.657237 CGAAGTGGGTTCCTCGCT 59.343 61.111 0.00 0.00 0.00 4.93
30 31 1.446272 CGAAGTGGGTTCCTCGCTC 60.446 63.158 0.00 0.00 0.00 5.03
31 32 1.671742 GAAGTGGGTTCCTCGCTCA 59.328 57.895 0.00 0.00 0.00 4.26
32 33 0.670854 GAAGTGGGTTCCTCGCTCAC 60.671 60.000 0.00 0.00 0.00 3.51
33 34 1.122019 AAGTGGGTTCCTCGCTCACT 61.122 55.000 0.00 0.00 39.97 3.41
34 35 1.122019 AGTGGGTTCCTCGCTCACTT 61.122 55.000 0.00 0.00 35.44 3.16
35 36 0.250338 GTGGGTTCCTCGCTCACTTT 60.250 55.000 0.00 0.00 0.00 2.66
36 37 0.250295 TGGGTTCCTCGCTCACTTTG 60.250 55.000 0.00 0.00 0.00 2.77
37 38 1.578206 GGGTTCCTCGCTCACTTTGC 61.578 60.000 0.00 0.00 0.00 3.68
38 39 0.884704 GGTTCCTCGCTCACTTTGCA 60.885 55.000 0.00 0.00 0.00 4.08
50 51 1.129998 CACTTTGCATGCGGAGAGAAG 59.870 52.381 22.37 15.82 0.00 2.85
57 58 1.434622 ATGCGGAGAGAAGCGCAATG 61.435 55.000 11.47 0.00 40.77 2.82
70 71 1.329906 GCGCAATGAATCTGTCAGAGG 59.670 52.381 8.82 0.00 40.43 3.69
72 73 1.674962 GCAATGAATCTGTCAGAGGCC 59.325 52.381 8.82 0.00 40.43 5.19
79 80 0.035725 TCTGTCAGAGGCCAGCAATG 60.036 55.000 5.01 0.00 0.00 2.82
109 110 1.537202 CCAGGACAAAAAGAAGAGCCG 59.463 52.381 0.00 0.00 0.00 5.52
153 154 2.629656 GCATTGCACCACGGCTCTT 61.630 57.895 3.15 0.00 34.04 2.85
154 155 1.503542 CATTGCACCACGGCTCTTC 59.496 57.895 0.00 0.00 34.04 2.87
173 174 2.877582 CCGTACGCCGCACTGTAC 60.878 66.667 10.49 0.00 38.03 2.90
203 204 4.789802 GCAGTAATATTTTTCCCTCTGCGC 60.790 45.833 0.00 0.00 37.79 6.09
215 216 0.103208 CTCTGCGCCGATCTTTACCT 59.897 55.000 4.18 0.00 0.00 3.08
218 219 1.327764 CTGCGCCGATCTTTACCTTTC 59.672 52.381 4.18 0.00 0.00 2.62
249 250 2.184322 GCGCAAGATCTGGGTCGA 59.816 61.111 0.30 0.00 40.11 4.20
266 267 1.507174 GACGACGAGCTGCTAAGGT 59.493 57.895 0.15 0.54 36.66 3.50
391 392 1.801771 CGCCGTGATGACCAGTAAAAA 59.198 47.619 0.00 0.00 0.00 1.94
393 394 3.485216 CGCCGTGATGACCAGTAAAAATC 60.485 47.826 0.00 0.00 0.00 2.17
394 395 3.485216 GCCGTGATGACCAGTAAAAATCG 60.485 47.826 0.00 0.00 0.00 3.34
431 434 1.158944 GGATACCCCCTCCTCCTCC 59.841 68.421 0.00 0.00 0.00 4.30
432 435 1.381089 GGATACCCCCTCCTCCTCCT 61.381 65.000 0.00 0.00 0.00 3.69
433 436 0.115547 GATACCCCCTCCTCCTCCTC 59.884 65.000 0.00 0.00 0.00 3.71
434 437 1.381089 ATACCCCCTCCTCCTCCTCC 61.381 65.000 0.00 0.00 0.00 4.30
435 438 2.541709 TACCCCCTCCTCCTCCTCCT 62.542 65.000 0.00 0.00 0.00 3.69
436 439 2.612251 CCCCTCCTCCTCCTCCTC 59.388 72.222 0.00 0.00 0.00 3.71
509 518 0.038709 GTGAGCGAGTGAGTGAAGCT 60.039 55.000 0.00 0.00 41.29 3.74
540 550 3.604629 GCACGGGCAGTAGAGAGA 58.395 61.111 3.77 0.00 40.72 3.10
541 551 1.435515 GCACGGGCAGTAGAGAGAG 59.564 63.158 3.77 0.00 40.72 3.20
542 552 1.032657 GCACGGGCAGTAGAGAGAGA 61.033 60.000 3.77 0.00 40.72 3.10
543 553 1.021202 CACGGGCAGTAGAGAGAGAG 58.979 60.000 0.00 0.00 0.00 3.20
548 558 1.478654 GGCAGTAGAGAGAGAGGGAGG 60.479 61.905 0.00 0.00 0.00 4.30
584 594 3.295228 CTGTACCGCACGCACAAGC 62.295 63.158 0.00 0.00 37.42 4.01
585 595 3.342627 GTACCGCACGCACAAGCA 61.343 61.111 0.00 0.00 42.27 3.91
588 598 4.249020 CCGCACGCACAAGCACAA 62.249 61.111 0.00 0.00 42.27 3.33
589 599 2.723271 CGCACGCACAAGCACAAG 60.723 61.111 0.00 0.00 42.27 3.16
590 600 2.353839 GCACGCACAAGCACAAGG 60.354 61.111 0.00 0.00 42.27 3.61
591 601 2.833533 GCACGCACAAGCACAAGGA 61.834 57.895 0.00 0.00 42.27 3.36
592 602 1.280746 CACGCACAAGCACAAGGAG 59.719 57.895 0.00 0.00 42.27 3.69
593 603 1.146041 ACGCACAAGCACAAGGAGA 59.854 52.632 0.00 0.00 42.27 3.71
594 604 0.882042 ACGCACAAGCACAAGGAGAG 60.882 55.000 0.00 0.00 42.27 3.20
595 605 0.601046 CGCACAAGCACAAGGAGAGA 60.601 55.000 0.00 0.00 42.27 3.10
749 2940 1.306997 TGACCTCCCTCCATCCACC 60.307 63.158 0.00 0.00 0.00 4.61
768 2959 4.180946 CTCCGTCCGACCTCGCTG 62.181 72.222 0.00 0.00 38.18 5.18
787 2978 4.792804 GTCCAGCCAGCTCCTGCC 62.793 72.222 5.55 0.00 40.80 4.85
789 2980 4.798344 CCAGCCAGCTCCTGCCTG 62.798 72.222 5.55 0.00 40.80 4.85
793 2984 4.798344 CCAGCTCCTGCCTGCCTG 62.798 72.222 0.00 0.00 40.80 4.85
797 2988 4.798344 CTCCTGCCTGCCTGCCTG 62.798 72.222 0.00 0.00 0.00 4.85
947 3146 1.499438 CCCCTTTCTTTATCCCCCTCC 59.501 57.143 0.00 0.00 0.00 4.30
981 3180 0.188587 TGACAGGGGAGTGAGTGAGT 59.811 55.000 0.00 0.00 0.00 3.41
982 3181 0.605589 GACAGGGGAGTGAGTGAGTG 59.394 60.000 0.00 0.00 0.00 3.51
983 3182 0.188587 ACAGGGGAGTGAGTGAGTGA 59.811 55.000 0.00 0.00 0.00 3.41
984 3183 0.894141 CAGGGGAGTGAGTGAGTGAG 59.106 60.000 0.00 0.00 0.00 3.51
1111 3328 3.675698 GTCAAGTGAGTTCCTCGATTCAC 59.324 47.826 0.00 0.00 40.08 3.18
1113 3330 1.550976 AGTGAGTTCCTCGATTCACCC 59.449 52.381 9.21 0.00 40.53 4.61
1114 3331 1.275291 GTGAGTTCCTCGATTCACCCA 59.725 52.381 0.00 0.00 35.15 4.51
1155 3372 5.136828 TCTCTCTCTCTCTCTCTCTCTCTC 58.863 50.000 0.00 0.00 0.00 3.20
1156 3373 5.103728 TCTCTCTCTCTCTCTCTCTCTCTCT 60.104 48.000 0.00 0.00 0.00 3.10
1228 3445 0.734889 CAGTGATGATGTTTCCGGGC 59.265 55.000 0.00 0.00 0.00 6.13
1248 3466 3.472652 GCGAGATGAGAGAGGACTAGAA 58.527 50.000 0.00 0.00 0.00 2.10
1287 3505 8.753497 ATGGTTTTGGGAGTAGATTCTATTTC 57.247 34.615 0.00 0.00 0.00 2.17
1304 3522 2.265589 TTCCCCTTTTTGACCGACTC 57.734 50.000 0.00 0.00 0.00 3.36
1305 3523 0.399075 TCCCCTTTTTGACCGACTCC 59.601 55.000 0.00 0.00 0.00 3.85
1306 3524 0.400594 CCCCTTTTTGACCGACTCCT 59.599 55.000 0.00 0.00 0.00 3.69
1307 3525 1.626825 CCCCTTTTTGACCGACTCCTA 59.373 52.381 0.00 0.00 0.00 2.94
1308 3526 2.614734 CCCCTTTTTGACCGACTCCTAC 60.615 54.545 0.00 0.00 0.00 3.18
1309 3527 2.302157 CCCTTTTTGACCGACTCCTACT 59.698 50.000 0.00 0.00 0.00 2.57
1310 3528 3.326747 CCTTTTTGACCGACTCCTACTG 58.673 50.000 0.00 0.00 0.00 2.74
1311 3529 3.326747 CTTTTTGACCGACTCCTACTGG 58.673 50.000 0.00 0.00 0.00 4.00
1312 3530 1.263356 TTTGACCGACTCCTACTGGG 58.737 55.000 0.00 0.00 0.00 4.45
1313 3531 0.113776 TTGACCGACTCCTACTGGGT 59.886 55.000 0.00 0.00 36.25 4.51
1314 3532 0.611062 TGACCGACTCCTACTGGGTG 60.611 60.000 0.00 0.00 36.25 4.61
1315 3533 0.323178 GACCGACTCCTACTGGGTGA 60.323 60.000 0.00 0.00 36.25 4.02
1316 3534 0.611340 ACCGACTCCTACTGGGTGAC 60.611 60.000 0.00 0.00 36.25 3.67
1317 3535 0.611062 CCGACTCCTACTGGGTGACA 60.611 60.000 0.00 0.00 36.25 3.58
1352 3570 1.732683 GCATTTGGTGGCGTTTCCG 60.733 57.895 0.00 0.00 37.80 4.30
1367 3585 1.164411 TTCCGTTCATGGTGATGTGC 58.836 50.000 0.00 0.00 0.00 4.57
1376 3594 1.913778 TGGTGATGTGCTCTGCAAAT 58.086 45.000 0.00 0.00 41.47 2.32
1379 3597 1.135199 GTGATGTGCTCTGCAAATGGG 60.135 52.381 0.00 0.00 41.47 4.00
1381 3599 0.901114 ATGTGCTCTGCAAATGGGCA 60.901 50.000 0.00 0.00 41.47 5.36
1382 3600 1.114119 TGTGCTCTGCAAATGGGCAA 61.114 50.000 0.00 0.00 44.40 4.52
1387 3605 0.905809 TCTGCAAATGGGCAATGGCT 60.906 50.000 6.78 0.00 44.40 4.75
1434 3652 2.977178 AGGCACTCGCTGGAAGAG 59.023 61.111 0.00 0.00 41.27 2.85
1442 3660 1.523258 CGCTGGAAGAGCCCATCAG 60.523 63.158 0.00 0.00 46.01 2.90
1525 3743 0.234884 AAGTACTTTTGCTCGTGCGC 59.765 50.000 1.12 0.00 43.34 6.09
1526 3744 1.154469 GTACTTTTGCTCGTGCGCC 60.154 57.895 4.18 0.00 43.34 6.53
1577 3795 2.822255 TTACCCGAATGCCGCAGC 60.822 61.111 0.00 0.00 40.48 5.25
1607 3825 1.202268 GCCATGCAATTCTGAGCTCAC 60.202 52.381 13.74 2.16 0.00 3.51
1610 3828 1.718396 TGCAATTCTGAGCTCACTCG 58.282 50.000 13.74 3.36 46.69 4.18
1646 3866 3.682315 CGTGATGCCGTCGATCGC 61.682 66.667 11.09 4.79 38.35 4.58
2776 5002 2.743928 GACTCCAAGGGCGTGCTG 60.744 66.667 0.00 0.00 0.00 4.41
2885 5111 1.672356 CAGAAGAACCTGCGGGTGG 60.672 63.158 20.54 0.00 46.67 4.61
2899 5125 2.737376 GTGGTCTTCGACACCGCC 60.737 66.667 13.30 1.89 38.32 6.13
2961 5187 4.963276 TTTGATTTGACCGTGGATCATC 57.037 40.909 0.00 0.00 0.00 2.92
3021 5248 5.955355 CCTATAGTTGGGGATTTGTTTTGGA 59.045 40.000 0.00 0.00 0.00 3.53
3025 5252 4.657969 AGTTGGGGATTTGTTTTGGAATCA 59.342 37.500 0.00 0.00 34.67 2.57
3026 5253 4.615588 TGGGGATTTGTTTTGGAATCAC 57.384 40.909 0.00 0.00 35.44 3.06
3027 5254 3.937814 GGGGATTTGTTTTGGAATCACC 58.062 45.455 1.97 1.97 45.59 4.02
3028 5255 4.890158 GGGATTTGTTTTGGAATCACCT 57.110 40.909 0.00 0.00 39.86 4.00
3029 5256 4.820897 GGGATTTGTTTTGGAATCACCTC 58.179 43.478 0.00 0.00 39.86 3.85
3030 5257 4.528206 GGGATTTGTTTTGGAATCACCTCT 59.472 41.667 0.00 0.00 39.86 3.69
3031 5258 5.473039 GGATTTGTTTTGGAATCACCTCTG 58.527 41.667 0.00 0.00 39.86 3.35
3032 5259 4.935352 TTTGTTTTGGAATCACCTCTGG 57.065 40.909 0.00 0.00 39.86 3.86
3033 5260 3.593442 TGTTTTGGAATCACCTCTGGT 57.407 42.857 0.00 0.00 39.86 4.00
3044 5271 2.683211 ACCTCTGGTGATTGGCTTTT 57.317 45.000 0.00 0.00 32.98 2.27
3045 5272 2.962859 ACCTCTGGTGATTGGCTTTTT 58.037 42.857 0.00 0.00 32.98 1.94
3119 5354 4.732784 AGTTATTGGCAAATGTACAAGCG 58.267 39.130 3.01 0.00 0.00 4.68
3152 5394 5.590259 AGTTGCTCTAGCTTGTTTTTCTTCA 59.410 36.000 3.26 0.00 42.66 3.02
3163 5405 8.134261 AGCTTGTTTTTCTTCATCTTCTTCTTC 58.866 33.333 0.00 0.00 0.00 2.87
3176 5418 6.076981 TCTTCTTCTTCCATTTCTTTGTGC 57.923 37.500 0.00 0.00 0.00 4.57
3179 5421 6.076981 TCTTCTTCCATTTCTTTGTGCTTC 57.923 37.500 0.00 0.00 0.00 3.86
3180 5422 4.488126 TCTTCCATTTCTTTGTGCTTCG 57.512 40.909 0.00 0.00 0.00 3.79
3181 5423 4.133820 TCTTCCATTTCTTTGTGCTTCGA 58.866 39.130 0.00 0.00 0.00 3.71
3195 5440 1.712977 CTTCGATGAAGCTGCTGGGC 61.713 60.000 1.35 0.00 32.78 5.36
3211 5456 3.333804 CTGGGCTTTTGTTTTTGTGTGT 58.666 40.909 0.00 0.00 0.00 3.72
3213 5458 2.347150 GGGCTTTTGTTTTTGTGTGTCG 59.653 45.455 0.00 0.00 0.00 4.35
3222 5467 1.372838 TTTGTGTGTCGTGGTGCTGG 61.373 55.000 0.00 0.00 0.00 4.85
3231 5476 2.285368 TGGTGCTGGTAGGGGAGG 60.285 66.667 0.00 0.00 0.00 4.30
3270 5515 0.107410 TGCTTCCCGGCGTATGAAAT 60.107 50.000 6.01 0.00 34.52 2.17
3278 5523 2.680841 CCGGCGTATGAAATGGAGAAAA 59.319 45.455 6.01 0.00 0.00 2.29
3304 5549 4.927978 ACTACGATTCTTCATGAGAGGG 57.072 45.455 0.00 0.00 35.37 4.30
3305 5550 3.639094 ACTACGATTCTTCATGAGAGGGG 59.361 47.826 0.00 0.00 35.37 4.79
3306 5551 2.472029 ACGATTCTTCATGAGAGGGGT 58.528 47.619 0.00 0.00 35.37 4.95
3307 5552 2.432510 ACGATTCTTCATGAGAGGGGTC 59.567 50.000 0.00 0.00 35.37 4.46
3309 5554 1.938585 TTCTTCATGAGAGGGGTCGT 58.061 50.000 0.00 0.00 35.37 4.34
3310 5555 1.186200 TCTTCATGAGAGGGGTCGTG 58.814 55.000 0.00 0.00 35.14 4.35
3311 5556 0.460987 CTTCATGAGAGGGGTCGTGC 60.461 60.000 0.00 0.00 34.02 5.34
3312 5557 1.191489 TTCATGAGAGGGGTCGTGCA 61.191 55.000 0.00 0.00 34.02 4.57
3314 5559 0.107508 CATGAGAGGGGTCGTGCAAT 60.108 55.000 0.00 0.00 0.00 3.56
3315 5560 0.107508 ATGAGAGGGGTCGTGCAATG 60.108 55.000 0.00 0.00 0.00 2.82
3316 5561 1.191489 TGAGAGGGGTCGTGCAATGA 61.191 55.000 0.00 0.00 0.00 2.57
3317 5562 0.460987 GAGAGGGGTCGTGCAATGAG 60.461 60.000 0.00 0.00 28.39 2.90
3318 5563 1.194781 AGAGGGGTCGTGCAATGAGT 61.195 55.000 0.00 0.00 28.39 3.41
3319 5564 0.535335 GAGGGGTCGTGCAATGAGTA 59.465 55.000 0.00 0.00 28.39 2.59
3320 5565 0.537188 AGGGGTCGTGCAATGAGTAG 59.463 55.000 0.00 0.00 28.39 2.57
3321 5566 0.462047 GGGGTCGTGCAATGAGTAGG 60.462 60.000 0.00 0.00 28.39 3.18
3322 5567 0.462047 GGGTCGTGCAATGAGTAGGG 60.462 60.000 0.00 0.00 28.39 3.53
3323 5568 1.090052 GGTCGTGCAATGAGTAGGGC 61.090 60.000 0.00 0.00 28.39 5.19
3324 5569 1.153647 TCGTGCAATGAGTAGGGCG 60.154 57.895 0.00 0.00 0.00 6.13
3325 5570 1.447838 CGTGCAATGAGTAGGGCGT 60.448 57.895 0.00 0.00 0.00 5.68
3326 5571 1.019278 CGTGCAATGAGTAGGGCGTT 61.019 55.000 0.00 0.00 0.00 4.84
3327 5572 1.165270 GTGCAATGAGTAGGGCGTTT 58.835 50.000 0.00 0.00 0.00 3.60
3328 5573 1.539827 GTGCAATGAGTAGGGCGTTTT 59.460 47.619 0.00 0.00 0.00 2.43
3329 5574 1.539388 TGCAATGAGTAGGGCGTTTTG 59.461 47.619 0.00 0.00 0.00 2.44
3330 5575 1.135402 GCAATGAGTAGGGCGTTTTGG 60.135 52.381 0.00 0.00 0.00 3.28
3331 5576 2.432444 CAATGAGTAGGGCGTTTTGGA 58.568 47.619 0.00 0.00 0.00 3.53
3332 5577 3.016736 CAATGAGTAGGGCGTTTTGGAT 58.983 45.455 0.00 0.00 0.00 3.41
3333 5578 2.396590 TGAGTAGGGCGTTTTGGATC 57.603 50.000 0.00 0.00 0.00 3.36
3334 5579 1.906574 TGAGTAGGGCGTTTTGGATCT 59.093 47.619 0.00 0.00 0.00 2.75
3335 5580 2.093658 TGAGTAGGGCGTTTTGGATCTC 60.094 50.000 0.00 0.00 0.00 2.75
3336 5581 1.134788 AGTAGGGCGTTTTGGATCTCG 60.135 52.381 0.00 0.00 0.00 4.04
3337 5582 0.177141 TAGGGCGTTTTGGATCTCGG 59.823 55.000 0.00 0.00 0.00 4.63
3338 5583 2.761195 GGGCGTTTTGGATCTCGGC 61.761 63.158 0.00 0.00 45.47 5.54
3339 5584 2.761195 GGCGTTTTGGATCTCGGCC 61.761 63.158 0.00 0.00 41.64 6.13
3340 5585 1.745489 GCGTTTTGGATCTCGGCCT 60.745 57.895 0.00 0.00 0.00 5.19
3341 5586 1.706287 GCGTTTTGGATCTCGGCCTC 61.706 60.000 0.00 0.00 0.00 4.70
3342 5587 0.108138 CGTTTTGGATCTCGGCCTCT 60.108 55.000 0.00 0.00 0.00 3.69
3343 5588 1.136305 CGTTTTGGATCTCGGCCTCTA 59.864 52.381 0.00 0.00 0.00 2.43
3344 5589 2.224066 CGTTTTGGATCTCGGCCTCTAT 60.224 50.000 0.00 0.00 0.00 1.98
3345 5590 3.134458 GTTTTGGATCTCGGCCTCTATG 58.866 50.000 0.00 0.00 0.00 2.23
3346 5591 1.342074 TTGGATCTCGGCCTCTATGG 58.658 55.000 0.00 0.00 39.35 2.74
3355 5600 4.758692 CCTCTATGGCGCACGAAT 57.241 55.556 10.83 0.00 0.00 3.34
3356 5601 2.992089 CCTCTATGGCGCACGAATT 58.008 52.632 10.83 0.00 0.00 2.17
3357 5602 1.299541 CCTCTATGGCGCACGAATTT 58.700 50.000 10.83 0.00 0.00 1.82
3358 5603 1.670811 CCTCTATGGCGCACGAATTTT 59.329 47.619 10.83 0.00 0.00 1.82
3359 5604 2.097466 CCTCTATGGCGCACGAATTTTT 59.903 45.455 10.83 0.00 0.00 1.94
3360 5605 3.100817 CTCTATGGCGCACGAATTTTTG 58.899 45.455 10.83 0.00 0.00 2.44
3361 5606 2.744741 TCTATGGCGCACGAATTTTTGA 59.255 40.909 10.83 0.00 0.00 2.69
3362 5607 2.430546 ATGGCGCACGAATTTTTGAA 57.569 40.000 10.83 0.00 0.00 2.69
3363 5608 2.209838 TGGCGCACGAATTTTTGAAA 57.790 40.000 10.83 0.00 0.00 2.69
3364 5609 2.540515 TGGCGCACGAATTTTTGAAAA 58.459 38.095 10.83 0.00 0.00 2.29
3365 5610 2.930040 TGGCGCACGAATTTTTGAAAAA 59.070 36.364 10.83 5.47 0.00 1.94
3385 5630 6.641176 AAAAATCAAAGTTGTCGGTTTCAC 57.359 33.333 0.00 0.00 0.00 3.18
3386 5631 5.576447 AAATCAAAGTTGTCGGTTTCACT 57.424 34.783 0.00 0.00 0.00 3.41
3387 5632 6.687081 AAATCAAAGTTGTCGGTTTCACTA 57.313 33.333 0.00 0.00 0.00 2.74
3388 5633 6.687081 AATCAAAGTTGTCGGTTTCACTAA 57.313 33.333 0.00 0.00 0.00 2.24
3389 5634 6.687081 ATCAAAGTTGTCGGTTTCACTAAA 57.313 33.333 0.00 0.00 0.00 1.85
3390 5635 6.497785 TCAAAGTTGTCGGTTTCACTAAAA 57.502 33.333 0.00 0.00 0.00 1.52
3391 5636 7.090953 TCAAAGTTGTCGGTTTCACTAAAAT 57.909 32.000 0.00 0.00 0.00 1.82
3392 5637 7.190871 TCAAAGTTGTCGGTTTCACTAAAATC 58.809 34.615 0.00 0.00 0.00 2.17
3393 5638 6.937436 AAGTTGTCGGTTTCACTAAAATCT 57.063 33.333 0.00 0.00 0.00 2.40
3394 5639 8.339714 CAAAGTTGTCGGTTTCACTAAAATCTA 58.660 33.333 0.00 0.00 0.00 1.98
3395 5640 8.441312 AAGTTGTCGGTTTCACTAAAATCTAA 57.559 30.769 0.00 0.00 0.00 2.10
3396 5641 8.441312 AGTTGTCGGTTTCACTAAAATCTAAA 57.559 30.769 0.00 0.00 0.00 1.85
3397 5642 8.340443 AGTTGTCGGTTTCACTAAAATCTAAAC 58.660 33.333 0.00 0.00 0.00 2.01
3398 5643 7.789273 TGTCGGTTTCACTAAAATCTAAACA 57.211 32.000 0.00 0.00 32.89 2.83
3399 5644 8.211116 TGTCGGTTTCACTAAAATCTAAACAA 57.789 30.769 0.00 0.00 32.89 2.83
3400 5645 8.675504 TGTCGGTTTCACTAAAATCTAAACAAA 58.324 29.630 0.00 0.00 32.89 2.83
3401 5646 9.505995 GTCGGTTTCACTAAAATCTAAACAAAA 57.494 29.630 0.00 0.00 32.89 2.44
3426 5671 9.944663 AAATGTACAAGTAAACAAGTATGTGTG 57.055 29.630 0.00 0.00 40.46 3.82
3427 5672 8.671384 ATGTACAAGTAAACAAGTATGTGTGT 57.329 30.769 0.00 0.00 40.46 3.72
3428 5673 9.767228 ATGTACAAGTAAACAAGTATGTGTGTA 57.233 29.630 0.00 0.00 40.46 2.90
3429 5674 9.597170 TGTACAAGTAAACAAGTATGTGTGTAA 57.403 29.630 0.00 0.00 40.46 2.41
3458 5703 6.020984 TCAGAATGAAATACGTTGAAATGCG 58.979 36.000 0.00 0.00 45.97 4.73
3459 5704 6.020984 CAGAATGAAATACGTTGAAATGCGA 58.979 36.000 0.00 0.00 39.69 5.10
3460 5705 6.021596 AGAATGAAATACGTTGAAATGCGAC 58.978 36.000 0.00 0.00 0.00 5.19
3461 5706 4.073169 TGAAATACGTTGAAATGCGACC 57.927 40.909 0.00 0.00 0.00 4.79
3462 5707 3.749088 TGAAATACGTTGAAATGCGACCT 59.251 39.130 0.00 0.00 0.00 3.85
3463 5708 3.740044 AATACGTTGAAATGCGACCTG 57.260 42.857 0.00 0.00 0.00 4.00
3464 5709 2.157834 TACGTTGAAATGCGACCTGT 57.842 45.000 0.00 0.00 0.00 4.00
3465 5710 2.157834 ACGTTGAAATGCGACCTGTA 57.842 45.000 0.00 0.00 0.00 2.74
3466 5711 2.695359 ACGTTGAAATGCGACCTGTAT 58.305 42.857 0.00 0.00 0.00 2.29
3467 5712 3.852286 ACGTTGAAATGCGACCTGTATA 58.148 40.909 0.00 0.00 0.00 1.47
3468 5713 4.247258 ACGTTGAAATGCGACCTGTATAA 58.753 39.130 0.00 0.00 0.00 0.98
3469 5714 4.691685 ACGTTGAAATGCGACCTGTATAAA 59.308 37.500 0.00 0.00 0.00 1.40
3470 5715 5.179742 ACGTTGAAATGCGACCTGTATAAAA 59.820 36.000 0.00 0.00 0.00 1.52
3471 5716 6.081049 CGTTGAAATGCGACCTGTATAAAAA 58.919 36.000 0.00 0.00 0.00 1.94
3491 5736 4.758773 AAATACAAATTCATGGGCTGGG 57.241 40.909 0.00 0.00 0.00 4.45
3492 5737 3.686227 ATACAAATTCATGGGCTGGGA 57.314 42.857 0.00 0.00 0.00 4.37
3493 5738 2.323999 ACAAATTCATGGGCTGGGAA 57.676 45.000 0.00 0.00 0.00 3.97
3494 5739 2.181975 ACAAATTCATGGGCTGGGAAG 58.818 47.619 0.00 0.00 0.00 3.46
3495 5740 2.225343 ACAAATTCATGGGCTGGGAAGA 60.225 45.455 0.00 0.00 0.00 2.87
3496 5741 3.036091 CAAATTCATGGGCTGGGAAGAT 58.964 45.455 0.00 0.00 0.00 2.40
3497 5742 2.376695 ATTCATGGGCTGGGAAGATG 57.623 50.000 0.00 0.00 0.00 2.90
3498 5743 1.297968 TTCATGGGCTGGGAAGATGA 58.702 50.000 0.00 0.00 0.00 2.92
3499 5744 1.297968 TCATGGGCTGGGAAGATGAA 58.702 50.000 0.00 0.00 0.00 2.57
3500 5745 1.854939 TCATGGGCTGGGAAGATGAAT 59.145 47.619 0.00 0.00 0.00 2.57
3501 5746 3.055328 TCATGGGCTGGGAAGATGAATA 58.945 45.455 0.00 0.00 0.00 1.75
3502 5747 3.073503 TCATGGGCTGGGAAGATGAATAG 59.926 47.826 0.00 0.00 0.00 1.73
3503 5748 1.143684 TGGGCTGGGAAGATGAATAGC 59.856 52.381 0.00 0.00 0.00 2.97
3504 5749 1.143684 GGGCTGGGAAGATGAATAGCA 59.856 52.381 0.00 0.00 33.05 3.49
3505 5750 2.224967 GGGCTGGGAAGATGAATAGCAT 60.225 50.000 0.00 0.00 40.77 3.79
3506 5751 3.009473 GGGCTGGGAAGATGAATAGCATA 59.991 47.826 0.00 0.00 37.34 3.14
3507 5752 4.507335 GGGCTGGGAAGATGAATAGCATAA 60.507 45.833 0.00 0.00 37.34 1.90
3508 5753 5.259632 GGCTGGGAAGATGAATAGCATAAT 58.740 41.667 0.00 0.00 37.34 1.28
3509 5754 5.125097 GGCTGGGAAGATGAATAGCATAATG 59.875 44.000 0.00 0.00 37.34 1.90
3510 5755 5.709164 GCTGGGAAGATGAATAGCATAATGT 59.291 40.000 0.00 0.00 37.34 2.71
3511 5756 6.881065 GCTGGGAAGATGAATAGCATAATGTA 59.119 38.462 0.00 0.00 37.34 2.29
3512 5757 7.065563 GCTGGGAAGATGAATAGCATAATGTAG 59.934 40.741 0.00 0.00 37.34 2.74
3513 5758 7.977818 TGGGAAGATGAATAGCATAATGTAGT 58.022 34.615 0.00 0.00 37.34 2.73
3514 5759 9.100197 TGGGAAGATGAATAGCATAATGTAGTA 57.900 33.333 0.00 0.00 37.34 1.82
3555 5800 2.849880 TTTTGCACAGCACTCACTTC 57.150 45.000 0.00 0.00 38.71 3.01
3556 5801 1.748950 TTTGCACAGCACTCACTTCA 58.251 45.000 0.00 0.00 38.71 3.02
3557 5802 1.748950 TTGCACAGCACTCACTTCAA 58.251 45.000 0.00 0.00 38.71 2.69
3558 5803 1.016627 TGCACAGCACTCACTTCAAC 58.983 50.000 0.00 0.00 31.71 3.18
3559 5804 0.041839 GCACAGCACTCACTTCAACG 60.042 55.000 0.00 0.00 0.00 4.10
3560 5805 1.290203 CACAGCACTCACTTCAACGT 58.710 50.000 0.00 0.00 0.00 3.99
3561 5806 2.469826 CACAGCACTCACTTCAACGTA 58.530 47.619 0.00 0.00 0.00 3.57
3562 5807 2.218759 CACAGCACTCACTTCAACGTAC 59.781 50.000 0.00 0.00 0.00 3.67
3563 5808 2.100916 ACAGCACTCACTTCAACGTACT 59.899 45.455 0.00 0.00 0.00 2.73
3564 5809 3.123804 CAGCACTCACTTCAACGTACTT 58.876 45.455 0.00 0.00 0.00 2.24
3565 5810 3.182572 CAGCACTCACTTCAACGTACTTC 59.817 47.826 0.00 0.00 0.00 3.01
3566 5811 2.153247 GCACTCACTTCAACGTACTTCG 59.847 50.000 0.00 0.00 46.00 3.79
3590 5835 9.134734 TCGTCCTGAAAATTTAAATATTTGTGC 57.865 29.630 11.05 0.00 0.00 4.57
3591 5836 8.101510 CGTCCTGAAAATTTAAATATTTGTGCG 58.898 33.333 11.05 0.00 0.00 5.34
3592 5837 8.921670 GTCCTGAAAATTTAAATATTTGTGCGT 58.078 29.630 11.05 0.00 0.00 5.24
3593 5838 9.482627 TCCTGAAAATTTAAATATTTGTGCGTT 57.517 25.926 11.05 0.19 0.00 4.84
3599 5844 9.615295 AAATTTAAATATTTGTGCGTTACGACT 57.385 25.926 9.62 0.00 0.00 4.18
3600 5845 9.615295 AATTTAAATATTTGTGCGTTACGACTT 57.385 25.926 9.62 0.00 0.00 3.01
3601 5846 8.644264 TTTAAATATTTGTGCGTTACGACTTC 57.356 30.769 9.62 0.00 0.00 3.01
3602 5847 5.849357 AATATTTGTGCGTTACGACTTCA 57.151 34.783 9.62 0.00 0.00 3.02
3603 5848 6.417191 AATATTTGTGCGTTACGACTTCAT 57.583 33.333 9.62 0.00 0.00 2.57
3604 5849 3.781341 TTTGTGCGTTACGACTTCATC 57.219 42.857 9.62 0.00 0.00 2.92
3605 5850 2.717580 TGTGCGTTACGACTTCATCT 57.282 45.000 9.62 0.00 0.00 2.90
3606 5851 3.835378 TGTGCGTTACGACTTCATCTA 57.165 42.857 9.62 0.00 0.00 1.98
3607 5852 4.365899 TGTGCGTTACGACTTCATCTAT 57.634 40.909 9.62 0.00 0.00 1.98
3608 5853 5.488645 TGTGCGTTACGACTTCATCTATA 57.511 39.130 9.62 0.00 0.00 1.31
3609 5854 6.068473 TGTGCGTTACGACTTCATCTATAT 57.932 37.500 9.62 0.00 0.00 0.86
3610 5855 6.140786 TGTGCGTTACGACTTCATCTATATC 58.859 40.000 9.62 0.00 0.00 1.63
3611 5856 6.017357 TGTGCGTTACGACTTCATCTATATCT 60.017 38.462 9.62 0.00 0.00 1.98
3612 5857 7.172019 TGTGCGTTACGACTTCATCTATATCTA 59.828 37.037 9.62 0.00 0.00 1.98
3613 5858 8.176365 GTGCGTTACGACTTCATCTATATCTAT 58.824 37.037 9.62 0.00 0.00 1.98
3614 5859 9.374838 TGCGTTACGACTTCATCTATATCTATA 57.625 33.333 9.62 0.00 0.00 1.31
3667 5912 8.665643 AAAATGTGAGCTTTCATGAATTTTGA 57.334 26.923 9.40 0.00 0.00 2.69
3668 5913 8.665643 AAATGTGAGCTTTCATGAATTTTGAA 57.334 26.923 9.40 1.77 0.00 2.69
3669 5914 8.842358 AATGTGAGCTTTCATGAATTTTGAAT 57.158 26.923 9.40 0.00 33.37 2.57
3670 5915 8.842358 ATGTGAGCTTTCATGAATTTTGAATT 57.158 26.923 9.40 0.00 33.37 2.17
3671 5916 8.665643 TGTGAGCTTTCATGAATTTTGAATTT 57.334 26.923 9.40 0.00 33.37 1.82
3672 5917 9.111613 TGTGAGCTTTCATGAATTTTGAATTTT 57.888 25.926 9.40 0.00 33.37 1.82
3673 5918 9.377383 GTGAGCTTTCATGAATTTTGAATTTTG 57.623 29.630 9.40 0.00 33.37 2.44
3674 5919 8.071368 TGAGCTTTCATGAATTTTGAATTTTGC 58.929 29.630 9.40 7.90 33.37 3.68
3675 5920 7.932335 AGCTTTCATGAATTTTGAATTTTGCA 58.068 26.923 9.40 0.00 33.37 4.08
3676 5921 8.573035 AGCTTTCATGAATTTTGAATTTTGCAT 58.427 25.926 9.40 0.00 33.37 3.96
3677 5922 9.187455 GCTTTCATGAATTTTGAATTTTGCATT 57.813 25.926 9.40 0.00 33.37 3.56
3681 5926 9.885934 TCATGAATTTTGAATTTTGCATTTGAG 57.114 25.926 0.00 0.00 0.00 3.02
3682 5927 9.123709 CATGAATTTTGAATTTTGCATTTGAGG 57.876 29.630 0.00 0.00 0.00 3.86
3683 5928 8.223177 TGAATTTTGAATTTTGCATTTGAGGT 57.777 26.923 0.00 0.00 0.00 3.85
3684 5929 8.344098 TGAATTTTGAATTTTGCATTTGAGGTC 58.656 29.630 0.00 0.00 0.00 3.85
3685 5930 8.454570 AATTTTGAATTTTGCATTTGAGGTCT 57.545 26.923 0.00 0.00 0.00 3.85
3686 5931 7.862512 TTTTGAATTTTGCATTTGAGGTCTT 57.137 28.000 0.00 0.00 0.00 3.01
3687 5932 7.481275 TTTGAATTTTGCATTTGAGGTCTTC 57.519 32.000 0.00 0.00 0.00 2.87
3688 5933 6.159299 TGAATTTTGCATTTGAGGTCTTCA 57.841 33.333 0.00 0.00 0.00 3.02
3689 5934 6.761312 TGAATTTTGCATTTGAGGTCTTCAT 58.239 32.000 0.00 0.00 35.27 2.57
3690 5935 6.647481 TGAATTTTGCATTTGAGGTCTTCATG 59.353 34.615 0.00 0.00 35.27 3.07
3691 5936 4.524316 TTTGCATTTGAGGTCTTCATGG 57.476 40.909 0.00 0.00 35.27 3.66
3692 5937 3.438216 TGCATTTGAGGTCTTCATGGA 57.562 42.857 0.00 0.00 35.27 3.41
3693 5938 3.349927 TGCATTTGAGGTCTTCATGGAG 58.650 45.455 0.00 0.00 35.27 3.86
3694 5939 2.098770 GCATTTGAGGTCTTCATGGAGC 59.901 50.000 0.00 0.00 35.27 4.70
3695 5940 3.618351 CATTTGAGGTCTTCATGGAGCT 58.382 45.455 0.00 0.00 45.20 4.09
3697 5942 3.657956 GAGGTCTTCATGGAGCTCG 57.342 57.895 7.83 0.00 46.17 5.03
3698 5943 0.103937 GAGGTCTTCATGGAGCTCGG 59.896 60.000 7.83 0.00 46.17 4.63
3699 5944 1.522580 GGTCTTCATGGAGCTCGGC 60.523 63.158 7.83 0.00 0.00 5.54
3700 5945 1.522580 GTCTTCATGGAGCTCGGCC 60.523 63.158 7.83 0.00 0.00 6.13
3701 5946 1.687146 TCTTCATGGAGCTCGGCCT 60.687 57.895 7.83 0.00 0.00 5.19
3702 5947 1.227497 CTTCATGGAGCTCGGCCTC 60.227 63.158 7.83 0.00 0.00 4.70
3708 5953 2.498726 GAGCTCGGCCTCCAAGAG 59.501 66.667 0.00 0.00 35.28 2.85
3711 5956 2.665000 CTCGGCCTCCAAGAGCAA 59.335 61.111 0.00 0.00 0.00 3.91
3712 5957 1.222936 CTCGGCCTCCAAGAGCAAT 59.777 57.895 0.00 0.00 0.00 3.56
3713 5958 0.393537 CTCGGCCTCCAAGAGCAATT 60.394 55.000 0.00 0.00 0.00 2.32
3714 5959 0.038166 TCGGCCTCCAAGAGCAATTT 59.962 50.000 0.00 0.00 0.00 1.82
3715 5960 0.453390 CGGCCTCCAAGAGCAATTTC 59.547 55.000 0.00 0.00 0.00 2.17
3716 5961 0.820226 GGCCTCCAAGAGCAATTTCC 59.180 55.000 0.00 0.00 0.00 3.13
3740 5985 1.290955 GCAATGCCAGAGCTGCAAA 59.709 52.632 1.02 0.00 42.92 3.68
3786 6035 7.119699 TGGTAGAACATTTTTCATGTAGCTGAG 59.880 37.037 0.00 0.00 0.00 3.35
3814 6063 6.259123 TGATAGATCTCAGATTATCAGGGCA 58.741 40.000 0.00 0.00 31.07 5.36
3820 6069 2.160205 CAGATTATCAGGGCATGCCTG 58.840 52.381 34.70 27.89 36.10 4.85
3855 6104 0.803380 GCAAATAAAGGCGCCTGCAG 60.803 55.000 33.60 17.67 45.35 4.41
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.434359 GCGAGGAACCCACTTCGG 60.434 66.667 0.00 0.00 39.21 4.30
12 13 1.446272 GAGCGAGGAACCCACTTCG 60.446 63.158 0.00 0.00 41.15 3.79
13 14 0.670854 GTGAGCGAGGAACCCACTTC 60.671 60.000 0.00 0.00 0.00 3.01
14 15 1.122019 AGTGAGCGAGGAACCCACTT 61.122 55.000 0.00 0.00 34.79 3.16
15 16 1.122019 AAGTGAGCGAGGAACCCACT 61.122 55.000 0.00 0.00 39.49 4.00
16 17 0.250338 AAAGTGAGCGAGGAACCCAC 60.250 55.000 0.00 0.00 0.00 4.61
17 18 0.250295 CAAAGTGAGCGAGGAACCCA 60.250 55.000 0.00 0.00 0.00 4.51
18 19 1.578206 GCAAAGTGAGCGAGGAACCC 61.578 60.000 0.00 0.00 0.00 4.11
19 20 0.884704 TGCAAAGTGAGCGAGGAACC 60.885 55.000 0.00 0.00 33.85 3.62
20 21 1.135859 CATGCAAAGTGAGCGAGGAAC 60.136 52.381 0.00 0.00 33.85 3.62
21 22 1.159285 CATGCAAAGTGAGCGAGGAA 58.841 50.000 0.00 0.00 33.85 3.36
22 23 1.300971 GCATGCAAAGTGAGCGAGGA 61.301 55.000 14.21 0.00 33.85 3.71
23 24 1.136147 GCATGCAAAGTGAGCGAGG 59.864 57.895 14.21 0.00 33.85 4.63
24 25 4.759564 GCATGCAAAGTGAGCGAG 57.240 55.556 14.21 0.00 33.85 5.03
27 28 1.136147 CTCCGCATGCAAAGTGAGC 59.864 57.895 19.57 0.00 0.00 4.26
28 29 0.725686 CTCTCCGCATGCAAAGTGAG 59.274 55.000 19.57 15.90 0.00 3.51
29 30 0.321346 TCTCTCCGCATGCAAAGTGA 59.679 50.000 19.57 16.13 0.00 3.41
30 31 1.129998 CTTCTCTCCGCATGCAAAGTG 59.870 52.381 19.57 14.16 0.00 3.16
31 32 1.446907 CTTCTCTCCGCATGCAAAGT 58.553 50.000 19.57 0.00 0.00 2.66
32 33 0.098376 GCTTCTCTCCGCATGCAAAG 59.902 55.000 19.57 13.93 0.00 2.77
33 34 1.638388 CGCTTCTCTCCGCATGCAAA 61.638 55.000 19.57 3.44 0.00 3.68
34 35 2.102438 CGCTTCTCTCCGCATGCAA 61.102 57.895 19.57 3.85 0.00 4.08
35 36 2.510012 CGCTTCTCTCCGCATGCA 60.510 61.111 19.57 0.00 0.00 3.96
50 51 1.329906 CCTCTGACAGATTCATTGCGC 59.670 52.381 5.42 0.00 32.17 6.09
57 58 0.251354 TGCTGGCCTCTGACAGATTC 59.749 55.000 5.42 0.69 36.86 2.52
70 71 0.179145 GTGATGTGCTCATTGCTGGC 60.179 55.000 2.26 0.00 43.37 4.85
72 73 1.132453 CTGGTGATGTGCTCATTGCTG 59.868 52.381 2.26 0.00 43.37 4.41
79 80 1.896220 TTTGTCCTGGTGATGTGCTC 58.104 50.000 0.00 0.00 0.00 4.26
88 89 2.587522 GGCTCTTCTTTTTGTCCTGGT 58.412 47.619 0.00 0.00 0.00 4.00
130 131 2.095847 CCGTGGTGCAATGCAATGC 61.096 57.895 19.99 19.99 46.58 3.56
131 132 2.095847 GCCGTGGTGCAATGCAATG 61.096 57.895 10.44 0.09 41.47 2.82
132 133 2.216750 GAGCCGTGGTGCAATGCAAT 62.217 55.000 10.44 0.00 41.47 3.56
153 154 4.111016 CAGTGCGGCGTACGGAGA 62.111 66.667 21.81 0.00 45.97 3.71
154 155 3.042842 TACAGTGCGGCGTACGGAG 62.043 63.158 30.80 21.86 45.97 4.63
173 174 3.303791 GGAAAAATATTACTGCTCCGCCG 60.304 47.826 0.00 0.00 0.00 6.46
174 175 3.004419 GGGAAAAATATTACTGCTCCGCC 59.996 47.826 0.00 0.00 0.00 6.13
175 176 3.883489 AGGGAAAAATATTACTGCTCCGC 59.117 43.478 0.00 0.00 0.00 5.54
203 204 2.289565 GGGCAGAAAGGTAAAGATCGG 58.710 52.381 0.00 0.00 0.00 4.18
215 216 4.697756 CTCGCACGGGGGCAGAAA 62.698 66.667 0.00 0.00 0.00 2.52
230 231 1.880340 CGACCCAGATCTTGCGCTC 60.880 63.158 9.73 0.00 0.00 5.03
233 234 1.874019 CGTCGACCCAGATCTTGCG 60.874 63.158 10.58 0.00 0.00 4.85
245 246 0.858135 CTTAGCAGCTCGTCGTCGAC 60.858 60.000 15.51 15.51 41.35 4.20
249 250 0.317479 AAACCTTAGCAGCTCGTCGT 59.683 50.000 0.00 0.00 0.00 4.34
266 267 3.655031 ATCACGGCGTGCGCAAAA 61.655 55.556 33.59 16.97 44.11 2.44
383 384 6.086871 GGAAAAAGAGGAGCGATTTTTACTG 58.913 40.000 0.00 0.00 36.53 2.74
391 392 0.107654 CGGGGAAAAAGAGGAGCGAT 60.108 55.000 0.00 0.00 0.00 4.58
393 394 2.399356 GCGGGGAAAAAGAGGAGCG 61.399 63.158 0.00 0.00 0.00 5.03
394 395 2.046864 GGCGGGGAAAAAGAGGAGC 61.047 63.158 0.00 0.00 0.00 4.70
452 455 2.047844 CAGCGGCATCGGATAGGG 60.048 66.667 1.45 0.00 36.79 3.53
533 543 1.700907 CCCTCCCTCCCTCTCTCTCTA 60.701 61.905 0.00 0.00 0.00 2.43
534 544 0.998945 CCCTCCCTCCCTCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
536 546 0.998945 CTCCCTCCCTCCCTCTCTCT 60.999 65.000 0.00 0.00 0.00 3.10
537 547 0.996762 TCTCCCTCCCTCCCTCTCTC 60.997 65.000 0.00 0.00 0.00 3.20
538 548 0.556380 TTCTCCCTCCCTCCCTCTCT 60.556 60.000 0.00 0.00 0.00 3.10
539 549 0.105709 CTTCTCCCTCCCTCCCTCTC 60.106 65.000 0.00 0.00 0.00 3.20
540 550 0.556380 TCTTCTCCCTCCCTCCCTCT 60.556 60.000 0.00 0.00 0.00 3.69
541 551 0.397957 GTCTTCTCCCTCCCTCCCTC 60.398 65.000 0.00 0.00 0.00 4.30
542 552 1.707200 GTCTTCTCCCTCCCTCCCT 59.293 63.158 0.00 0.00 0.00 4.20
543 553 1.383386 GGTCTTCTCCCTCCCTCCC 60.383 68.421 0.00 0.00 0.00 4.30
548 558 1.552792 CAGTCTTGGTCTTCTCCCTCC 59.447 57.143 0.00 0.00 0.00 4.30
584 594 0.389166 GCACCGTCTCTCTCCTTGTG 60.389 60.000 0.00 0.00 0.00 3.33
585 595 0.540830 AGCACCGTCTCTCTCCTTGT 60.541 55.000 0.00 0.00 0.00 3.16
587 597 1.254284 CCAGCACCGTCTCTCTCCTT 61.254 60.000 0.00 0.00 0.00 3.36
588 598 1.680651 CCAGCACCGTCTCTCTCCT 60.681 63.158 0.00 0.00 0.00 3.69
589 599 1.662438 CTCCAGCACCGTCTCTCTCC 61.662 65.000 0.00 0.00 0.00 3.71
590 600 1.806568 CTCCAGCACCGTCTCTCTC 59.193 63.158 0.00 0.00 0.00 3.20
591 601 2.347322 GCTCCAGCACCGTCTCTCT 61.347 63.158 0.00 0.00 41.59 3.10
592 602 2.183046 GCTCCAGCACCGTCTCTC 59.817 66.667 0.00 0.00 41.59 3.20
593 603 3.753434 CGCTCCAGCACCGTCTCT 61.753 66.667 0.00 0.00 42.21 3.10
594 604 3.691744 CTCGCTCCAGCACCGTCTC 62.692 68.421 0.00 0.00 42.21 3.36
595 605 3.753434 CTCGCTCCAGCACCGTCT 61.753 66.667 0.00 0.00 42.21 4.18
622 632 3.157949 CTCTTCCTCCTCCCGCCC 61.158 72.222 0.00 0.00 0.00 6.13
623 633 3.157949 CCTCTTCCTCCTCCCGCC 61.158 72.222 0.00 0.00 0.00 6.13
624 634 2.042843 TCCTCTTCCTCCTCCCGC 60.043 66.667 0.00 0.00 0.00 6.13
625 635 1.000486 TGTCCTCTTCCTCCTCCCG 60.000 63.158 0.00 0.00 0.00 5.14
626 636 1.324005 CGTGTCCTCTTCCTCCTCCC 61.324 65.000 0.00 0.00 0.00 4.30
627 637 1.324005 CCGTGTCCTCTTCCTCCTCC 61.324 65.000 0.00 0.00 0.00 4.30
879 3073 2.909662 AGAAAGGGAGTGAGGAAGGAAG 59.090 50.000 0.00 0.00 0.00 3.46
880 3074 2.907042 GAGAAAGGGAGTGAGGAAGGAA 59.093 50.000 0.00 0.00 0.00 3.36
881 3075 2.112691 AGAGAAAGGGAGTGAGGAAGGA 59.887 50.000 0.00 0.00 0.00 3.36
882 3076 2.545810 AGAGAAAGGGAGTGAGGAAGG 58.454 52.381 0.00 0.00 0.00 3.46
947 3146 0.324183 TGTCAGCAGAGGGAGAGAGG 60.324 60.000 0.00 0.00 0.00 3.69
981 3180 2.673341 ACTCGCTCGCCTCACTCA 60.673 61.111 0.00 0.00 0.00 3.41
982 3181 1.999071 ATCACTCGCTCGCCTCACTC 61.999 60.000 0.00 0.00 0.00 3.51
983 3182 2.049185 ATCACTCGCTCGCCTCACT 61.049 57.895 0.00 0.00 0.00 3.41
984 3183 1.875813 CATCACTCGCTCGCCTCAC 60.876 63.158 0.00 0.00 0.00 3.51
1074 3291 0.178995 TTGACCTCAGGCAATGCACA 60.179 50.000 7.79 0.00 0.00 4.57
1111 3328 2.774234 AGAGAGAGAGAGAGAGAGTGGG 59.226 54.545 0.00 0.00 0.00 4.61
1113 3330 4.648762 AGAGAGAGAGAGAGAGAGAGAGTG 59.351 50.000 0.00 0.00 0.00 3.51
1114 3331 4.877773 AGAGAGAGAGAGAGAGAGAGAGT 58.122 47.826 0.00 0.00 0.00 3.24
1155 3372 5.139727 AGAGAGAGAGAGAGAGAGAGAGAG 58.860 50.000 0.00 0.00 0.00 3.20
1156 3373 5.103728 AGAGAGAGAGAGAGAGAGAGAGAGA 60.104 48.000 0.00 0.00 0.00 3.10
1228 3445 3.498397 GCTTCTAGTCCTCTCTCATCTCG 59.502 52.174 0.00 0.00 0.00 4.04
1248 3466 5.473504 CCCAAAACCATTATAATCTAGCGCT 59.526 40.000 17.26 17.26 0.00 5.92
1287 3505 0.400594 AGGAGTCGGTCAAAAAGGGG 59.599 55.000 0.00 0.00 0.00 4.79
1304 3522 1.546476 GTCAGTCTGTCACCCAGTAGG 59.454 57.143 0.00 0.00 42.19 3.18
1305 3523 2.230025 CTGTCAGTCTGTCACCCAGTAG 59.770 54.545 0.00 0.00 42.19 2.57
1306 3524 2.239400 CTGTCAGTCTGTCACCCAGTA 58.761 52.381 0.00 0.00 42.19 2.74
1307 3525 1.043816 CTGTCAGTCTGTCACCCAGT 58.956 55.000 0.00 0.00 42.19 4.00
1308 3526 1.043816 ACTGTCAGTCTGTCACCCAG 58.956 55.000 0.00 2.94 42.97 4.45
1309 3527 0.752658 CACTGTCAGTCTGTCACCCA 59.247 55.000 1.37 0.00 0.00 4.51
1310 3528 0.753262 ACACTGTCAGTCTGTCACCC 59.247 55.000 1.37 0.00 0.00 4.61
1311 3529 1.137086 ACACACTGTCAGTCTGTCACC 59.863 52.381 7.98 0.00 0.00 4.02
1312 3530 2.196749 CACACACTGTCAGTCTGTCAC 58.803 52.381 10.60 0.00 24.25 3.67
1313 3531 1.824852 ACACACACTGTCAGTCTGTCA 59.175 47.619 10.60 0.00 24.25 3.58
1314 3532 2.196749 CACACACACTGTCAGTCTGTC 58.803 52.381 10.60 0.00 24.25 3.51
1315 3533 1.740380 GCACACACACTGTCAGTCTGT 60.740 52.381 7.98 7.98 26.95 3.41
1316 3534 0.933097 GCACACACACTGTCAGTCTG 59.067 55.000 1.37 4.45 0.00 3.51
1317 3535 0.536724 TGCACACACACTGTCAGTCT 59.463 50.000 1.37 0.00 0.00 3.24
1320 3538 2.542205 CCAAATGCACACACACTGTCAG 60.542 50.000 0.00 0.00 0.00 3.51
1331 3549 0.249238 GAAACGCCACCAAATGCACA 60.249 50.000 0.00 0.00 0.00 4.57
1332 3550 0.943835 GGAAACGCCACCAAATGCAC 60.944 55.000 0.00 0.00 36.34 4.57
1333 3551 1.365633 GGAAACGCCACCAAATGCA 59.634 52.632 0.00 0.00 36.34 3.96
1334 3552 4.260194 GGAAACGCCACCAAATGC 57.740 55.556 0.00 0.00 36.34 3.56
1352 3570 1.131883 GCAGAGCACATCACCATGAAC 59.868 52.381 0.00 0.00 33.72 3.18
1367 3585 0.461339 GCCATTGCCCATTTGCAGAG 60.461 55.000 0.00 0.00 43.21 3.35
1418 3636 2.817396 GCTCTTCCAGCGAGTGCC 60.817 66.667 0.00 0.00 44.31 5.01
1434 3652 0.895100 TGGCACAGAAACTGATGGGC 60.895 55.000 5.76 7.38 35.18 5.36
1442 3660 2.119671 CCGTTTCTTGGCACAGAAAC 57.880 50.000 27.19 27.19 44.69 2.78
1525 3743 3.488047 GGTCATTGTTCATGCGATTCTGG 60.488 47.826 0.00 0.00 32.13 3.86
1526 3744 3.127376 TGGTCATTGTTCATGCGATTCTG 59.873 43.478 0.00 0.00 32.13 3.02
1559 3777 3.098555 CTGCGGCATTCGGGTAAC 58.901 61.111 1.75 0.00 39.69 2.50
1577 3795 0.821517 ATTGCATGGCTGGTCATGTG 59.178 50.000 15.20 0.00 44.54 3.21
1801 4021 2.324332 CGTCCGACGACCTGATCAGG 62.324 65.000 35.55 35.55 46.05 3.86
2416 4642 3.252484 GCGGTGTACACGATCGGC 61.252 66.667 20.98 13.01 0.00 5.54
2548 4774 2.501610 GAGTCCACGATGGCCCTC 59.498 66.667 0.00 0.00 37.47 4.30
2566 4792 2.240500 GCTCGTGATGATCGTGCCC 61.241 63.158 0.00 0.00 40.35 5.36
2616 4842 3.482783 GCTGCCTCACGAACTCGC 61.483 66.667 0.00 0.00 44.43 5.03
2828 5054 3.756727 GGTGTCGTCCTCGGACCC 61.757 72.222 10.34 2.35 41.76 4.46
2929 5155 6.524239 CACGGTCAAATCAAATGTAATCACAG 59.476 38.462 0.00 0.00 38.30 3.66
2976 5203 1.881641 TATTCACACGCGCACACACG 61.882 55.000 5.73 0.00 0.00 4.49
2978 5205 0.718904 GATATTCACACGCGCACACA 59.281 50.000 5.73 0.00 0.00 3.72
3025 5252 2.683211 AAAAGCCAATCACCAGAGGT 57.317 45.000 0.00 0.00 35.62 3.85
3056 5283 2.034053 GCCGATCACCACAACTCAAAAA 59.966 45.455 0.00 0.00 0.00 1.94
3057 5284 1.606668 GCCGATCACCACAACTCAAAA 59.393 47.619 0.00 0.00 0.00 2.44
3058 5285 1.234821 GCCGATCACCACAACTCAAA 58.765 50.000 0.00 0.00 0.00 2.69
3059 5286 0.107643 TGCCGATCACCACAACTCAA 59.892 50.000 0.00 0.00 0.00 3.02
3060 5287 0.107643 TTGCCGATCACCACAACTCA 59.892 50.000 0.00 0.00 0.00 3.41
3061 5288 1.453155 ATTGCCGATCACCACAACTC 58.547 50.000 0.00 0.00 0.00 3.01
3062 5289 1.541147 CAATTGCCGATCACCACAACT 59.459 47.619 0.00 0.00 0.00 3.16
3063 5290 1.402720 CCAATTGCCGATCACCACAAC 60.403 52.381 0.00 0.00 0.00 3.32
3064 5291 0.887247 CCAATTGCCGATCACCACAA 59.113 50.000 0.00 0.00 0.00 3.33
3065 5292 1.594194 GCCAATTGCCGATCACCACA 61.594 55.000 0.00 0.00 0.00 4.17
3066 5293 1.139520 GCCAATTGCCGATCACCAC 59.860 57.895 0.00 0.00 0.00 4.16
3074 5301 1.018148 TACCGTATTGCCAATTGCCG 58.982 50.000 0.00 0.00 40.16 5.69
3119 5354 5.927115 ACAAGCTAGAGCAACTACTACAAAC 59.073 40.000 4.01 0.00 45.16 2.93
3152 5394 6.492772 AGCACAAAGAAATGGAAGAAGAAGAT 59.507 34.615 0.00 0.00 0.00 2.40
3163 5405 4.424061 TCATCGAAGCACAAAGAAATGG 57.576 40.909 0.00 0.00 0.00 3.16
3176 5418 1.712977 GCCCAGCAGCTTCATCGAAG 61.713 60.000 0.00 0.00 42.03 3.79
3179 5421 2.124819 AGCCCAGCAGCTTCATCG 60.125 61.111 0.00 0.00 41.41 3.84
3195 5440 3.984633 ACCACGACACACAAAAACAAAAG 59.015 39.130 0.00 0.00 0.00 2.27
3211 5456 3.000819 CCCCTACCAGCACCACGA 61.001 66.667 0.00 0.00 0.00 4.35
3213 5458 2.670148 CCTCCCCTACCAGCACCAC 61.670 68.421 0.00 0.00 0.00 4.16
3222 5467 1.580059 TCCACAATCACCTCCCCTAC 58.420 55.000 0.00 0.00 0.00 3.18
3231 5476 3.612479 GCACAGGACAATTCCACAATCAC 60.612 47.826 0.00 0.00 45.72 3.06
3278 5523 8.744652 CCCTCTCATGAAGAATCGTAGTATTAT 58.255 37.037 0.00 0.00 32.23 1.28
3286 5531 2.432510 GACCCCTCTCATGAAGAATCGT 59.567 50.000 0.00 0.00 32.23 3.73
3288 5533 2.432510 ACGACCCCTCTCATGAAGAATC 59.567 50.000 0.00 0.00 32.23 2.52
3290 5535 1.550524 CACGACCCCTCTCATGAAGAA 59.449 52.381 0.00 0.00 32.23 2.52
3292 5537 0.460987 GCACGACCCCTCTCATGAAG 60.461 60.000 0.00 0.00 0.00 3.02
3293 5538 1.191489 TGCACGACCCCTCTCATGAA 61.191 55.000 0.00 0.00 0.00 2.57
3295 5540 0.107508 ATTGCACGACCCCTCTCATG 60.108 55.000 0.00 0.00 0.00 3.07
3296 5541 0.107508 CATTGCACGACCCCTCTCAT 60.108 55.000 0.00 0.00 0.00 2.90
3297 5542 1.191489 TCATTGCACGACCCCTCTCA 61.191 55.000 0.00 0.00 0.00 3.27
3298 5543 0.460987 CTCATTGCACGACCCCTCTC 60.461 60.000 0.00 0.00 0.00 3.20
3299 5544 1.194781 ACTCATTGCACGACCCCTCT 61.195 55.000 0.00 0.00 0.00 3.69
3300 5545 0.535335 TACTCATTGCACGACCCCTC 59.465 55.000 0.00 0.00 0.00 4.30
3301 5546 0.537188 CTACTCATTGCACGACCCCT 59.463 55.000 0.00 0.00 0.00 4.79
3302 5547 0.462047 CCTACTCATTGCACGACCCC 60.462 60.000 0.00 0.00 0.00 4.95
3303 5548 0.462047 CCCTACTCATTGCACGACCC 60.462 60.000 0.00 0.00 0.00 4.46
3304 5549 1.090052 GCCCTACTCATTGCACGACC 61.090 60.000 0.00 0.00 0.00 4.79
3305 5550 1.421410 CGCCCTACTCATTGCACGAC 61.421 60.000 0.00 0.00 0.00 4.34
3306 5551 1.153647 CGCCCTACTCATTGCACGA 60.154 57.895 0.00 0.00 0.00 4.35
3307 5552 1.019278 AACGCCCTACTCATTGCACG 61.019 55.000 0.00 0.00 0.00 5.34
3309 5554 1.539388 CAAAACGCCCTACTCATTGCA 59.461 47.619 0.00 0.00 0.00 4.08
3310 5555 1.135402 CCAAAACGCCCTACTCATTGC 60.135 52.381 0.00 0.00 0.00 3.56
3311 5556 2.432444 TCCAAAACGCCCTACTCATTG 58.568 47.619 0.00 0.00 0.00 2.82
3312 5557 2.871096 TCCAAAACGCCCTACTCATT 57.129 45.000 0.00 0.00 0.00 2.57
3314 5559 1.906574 AGATCCAAAACGCCCTACTCA 59.093 47.619 0.00 0.00 0.00 3.41
3315 5560 2.552031 GAGATCCAAAACGCCCTACTC 58.448 52.381 0.00 0.00 0.00 2.59
3316 5561 1.134788 CGAGATCCAAAACGCCCTACT 60.135 52.381 0.00 0.00 0.00 2.57
3317 5562 1.287425 CGAGATCCAAAACGCCCTAC 58.713 55.000 0.00 0.00 0.00 3.18
3318 5563 0.177141 CCGAGATCCAAAACGCCCTA 59.823 55.000 0.00 0.00 0.00 3.53
3319 5564 1.078426 CCGAGATCCAAAACGCCCT 60.078 57.895 0.00 0.00 0.00 5.19
3320 5565 2.761195 GCCGAGATCCAAAACGCCC 61.761 63.158 0.00 0.00 0.00 6.13
3321 5566 2.761195 GGCCGAGATCCAAAACGCC 61.761 63.158 0.00 0.00 0.00 5.68
3322 5567 1.706287 GAGGCCGAGATCCAAAACGC 61.706 60.000 0.00 0.00 0.00 4.84
3323 5568 0.108138 AGAGGCCGAGATCCAAAACG 60.108 55.000 0.00 0.00 0.00 3.60
3324 5569 2.981859 TAGAGGCCGAGATCCAAAAC 57.018 50.000 0.00 0.00 0.00 2.43
3325 5570 2.104792 CCATAGAGGCCGAGATCCAAAA 59.895 50.000 0.00 0.00 0.00 2.44
3326 5571 1.694150 CCATAGAGGCCGAGATCCAAA 59.306 52.381 0.00 0.00 0.00 3.28
3327 5572 1.342074 CCATAGAGGCCGAGATCCAA 58.658 55.000 0.00 0.00 0.00 3.53
3328 5573 3.057749 CCATAGAGGCCGAGATCCA 57.942 57.895 0.00 0.00 0.00 3.41
3338 5583 1.299541 AAATTCGTGCGCCATAGAGG 58.700 50.000 4.18 0.00 41.84 3.69
3339 5584 3.100817 CAAAAATTCGTGCGCCATAGAG 58.899 45.455 4.18 0.00 0.00 2.43
3340 5585 2.744741 TCAAAAATTCGTGCGCCATAGA 59.255 40.909 4.18 0.00 0.00 1.98
3341 5586 3.129852 TCAAAAATTCGTGCGCCATAG 57.870 42.857 4.18 0.00 0.00 2.23
3342 5587 3.560902 TTCAAAAATTCGTGCGCCATA 57.439 38.095 4.18 0.00 0.00 2.74
3343 5588 2.430546 TTCAAAAATTCGTGCGCCAT 57.569 40.000 4.18 0.00 0.00 4.40
3344 5589 2.209838 TTTCAAAAATTCGTGCGCCA 57.790 40.000 4.18 0.00 0.00 5.69
3345 5590 3.577501 TTTTTCAAAAATTCGTGCGCC 57.422 38.095 4.18 0.00 0.00 6.53
3362 5607 6.394809 AGTGAAACCGACAACTTTGATTTTT 58.605 32.000 0.00 0.00 37.80 1.94
3363 5608 5.961272 AGTGAAACCGACAACTTTGATTTT 58.039 33.333 0.00 0.00 37.80 1.82
3364 5609 5.576447 AGTGAAACCGACAACTTTGATTT 57.424 34.783 0.00 0.00 37.80 2.17
3365 5610 6.687081 TTAGTGAAACCGACAACTTTGATT 57.313 33.333 0.00 0.00 37.80 2.57
3366 5611 6.687081 TTTAGTGAAACCGACAACTTTGAT 57.313 33.333 0.00 0.00 37.80 2.57
3367 5612 6.497785 TTTTAGTGAAACCGACAACTTTGA 57.502 33.333 0.00 0.00 37.80 2.69
3368 5613 7.193595 AGATTTTAGTGAAACCGACAACTTTG 58.806 34.615 0.00 0.00 37.80 2.77
3369 5614 7.329588 AGATTTTAGTGAAACCGACAACTTT 57.670 32.000 0.00 0.00 37.80 2.66
3370 5615 6.937436 AGATTTTAGTGAAACCGACAACTT 57.063 33.333 0.00 0.00 37.80 2.66
3371 5616 8.340443 GTTTAGATTTTAGTGAAACCGACAACT 58.660 33.333 0.00 0.00 37.80 3.16
3372 5617 8.124199 TGTTTAGATTTTAGTGAAACCGACAAC 58.876 33.333 0.00 0.00 37.80 3.32
3373 5618 8.211116 TGTTTAGATTTTAGTGAAACCGACAA 57.789 30.769 0.00 0.00 37.80 3.18
3374 5619 7.789273 TGTTTAGATTTTAGTGAAACCGACA 57.211 32.000 0.00 0.00 37.80 4.35
3375 5620 9.505995 TTTTGTTTAGATTTTAGTGAAACCGAC 57.494 29.630 0.00 0.00 37.80 4.79
3400 5645 9.944663 CACACATACTTGTTTACTTGTACATTT 57.055 29.630 0.00 0.00 32.34 2.32
3401 5646 9.116067 ACACACATACTTGTTTACTTGTACATT 57.884 29.630 0.00 0.00 32.34 2.71
3402 5647 8.671384 ACACACATACTTGTTTACTTGTACAT 57.329 30.769 0.00 0.00 32.34 2.29
3403 5648 9.597170 TTACACACATACTTGTTTACTTGTACA 57.403 29.630 0.00 0.00 32.34 2.90
3433 5678 6.522855 CGCATTTCAACGTATTTCATTCTGAA 59.477 34.615 0.00 0.00 34.03 3.02
3434 5679 6.020984 CGCATTTCAACGTATTTCATTCTGA 58.979 36.000 0.00 0.00 0.00 3.27
3435 5680 6.020984 TCGCATTTCAACGTATTTCATTCTG 58.979 36.000 0.00 0.00 0.00 3.02
3436 5681 6.021596 GTCGCATTTCAACGTATTTCATTCT 58.978 36.000 0.00 0.00 0.00 2.40
3437 5682 5.227184 GGTCGCATTTCAACGTATTTCATTC 59.773 40.000 0.00 0.00 0.00 2.67
3438 5683 5.092781 GGTCGCATTTCAACGTATTTCATT 58.907 37.500 0.00 0.00 0.00 2.57
3439 5684 4.394920 AGGTCGCATTTCAACGTATTTCAT 59.605 37.500 0.00 0.00 0.00 2.57
3440 5685 3.749088 AGGTCGCATTTCAACGTATTTCA 59.251 39.130 0.00 0.00 0.00 2.69
3441 5686 4.088648 CAGGTCGCATTTCAACGTATTTC 58.911 43.478 0.00 0.00 0.00 2.17
3442 5687 3.500680 ACAGGTCGCATTTCAACGTATTT 59.499 39.130 0.00 0.00 0.00 1.40
3443 5688 3.071479 ACAGGTCGCATTTCAACGTATT 58.929 40.909 0.00 0.00 0.00 1.89
3444 5689 2.695359 ACAGGTCGCATTTCAACGTAT 58.305 42.857 0.00 0.00 0.00 3.06
3445 5690 2.157834 ACAGGTCGCATTTCAACGTA 57.842 45.000 0.00 0.00 0.00 3.57
3446 5691 2.157834 TACAGGTCGCATTTCAACGT 57.842 45.000 0.00 0.00 0.00 3.99
3447 5692 4.850859 TTATACAGGTCGCATTTCAACG 57.149 40.909 0.00 0.00 0.00 4.10
3468 5713 5.250313 TCCCAGCCCATGAATTTGTATTTTT 59.750 36.000 0.00 0.00 0.00 1.94
3469 5714 4.782156 TCCCAGCCCATGAATTTGTATTTT 59.218 37.500 0.00 0.00 0.00 1.82
3470 5715 4.360889 TCCCAGCCCATGAATTTGTATTT 58.639 39.130 0.00 0.00 0.00 1.40
3471 5716 3.992999 TCCCAGCCCATGAATTTGTATT 58.007 40.909 0.00 0.00 0.00 1.89
3472 5717 3.686227 TCCCAGCCCATGAATTTGTAT 57.314 42.857 0.00 0.00 0.00 2.29
3473 5718 3.011144 TCTTCCCAGCCCATGAATTTGTA 59.989 43.478 0.00 0.00 0.00 2.41
3474 5719 2.181975 CTTCCCAGCCCATGAATTTGT 58.818 47.619 0.00 0.00 0.00 2.83
3475 5720 2.459644 TCTTCCCAGCCCATGAATTTG 58.540 47.619 0.00 0.00 0.00 2.32
3476 5721 2.925966 TCTTCCCAGCCCATGAATTT 57.074 45.000 0.00 0.00 0.00 1.82
3477 5722 2.245546 TCATCTTCCCAGCCCATGAATT 59.754 45.455 0.00 0.00 0.00 2.17
3478 5723 1.854939 TCATCTTCCCAGCCCATGAAT 59.145 47.619 0.00 0.00 0.00 2.57
3479 5724 1.297968 TCATCTTCCCAGCCCATGAA 58.702 50.000 0.00 0.00 0.00 2.57
3480 5725 1.297968 TTCATCTTCCCAGCCCATGA 58.702 50.000 0.00 0.00 0.00 3.07
3481 5726 2.376695 ATTCATCTTCCCAGCCCATG 57.623 50.000 0.00 0.00 0.00 3.66
3482 5727 2.224967 GCTATTCATCTTCCCAGCCCAT 60.225 50.000 0.00 0.00 0.00 4.00
3483 5728 1.143684 GCTATTCATCTTCCCAGCCCA 59.856 52.381 0.00 0.00 0.00 5.36
3484 5729 1.143684 TGCTATTCATCTTCCCAGCCC 59.856 52.381 0.00 0.00 0.00 5.19
3485 5730 2.645838 TGCTATTCATCTTCCCAGCC 57.354 50.000 0.00 0.00 0.00 4.85
3486 5731 5.709164 ACATTATGCTATTCATCTTCCCAGC 59.291 40.000 0.00 0.00 36.63 4.85
3487 5732 8.099537 ACTACATTATGCTATTCATCTTCCCAG 58.900 37.037 0.00 0.00 36.63 4.45
3488 5733 7.977818 ACTACATTATGCTATTCATCTTCCCA 58.022 34.615 0.00 0.00 36.63 4.37
3535 5780 2.491298 TGAAGTGAGTGCTGTGCAAAAA 59.509 40.909 0.00 0.00 41.47 1.94
3536 5781 2.090760 TGAAGTGAGTGCTGTGCAAAA 58.909 42.857 0.00 0.00 41.47 2.44
3537 5782 1.748950 TGAAGTGAGTGCTGTGCAAA 58.251 45.000 0.00 0.00 41.47 3.68
3538 5783 1.401552 GTTGAAGTGAGTGCTGTGCAA 59.598 47.619 0.00 0.00 41.47 4.08
3539 5784 1.016627 GTTGAAGTGAGTGCTGTGCA 58.983 50.000 0.00 0.00 35.60 4.57
3540 5785 0.041839 CGTTGAAGTGAGTGCTGTGC 60.042 55.000 0.00 0.00 0.00 4.57
3541 5786 1.290203 ACGTTGAAGTGAGTGCTGTG 58.710 50.000 0.00 0.00 0.00 3.66
3542 5787 2.100916 AGTACGTTGAAGTGAGTGCTGT 59.899 45.455 0.00 0.00 0.00 4.40
3543 5788 2.743938 AGTACGTTGAAGTGAGTGCTG 58.256 47.619 0.00 0.00 0.00 4.41
3544 5789 3.381949 GAAGTACGTTGAAGTGAGTGCT 58.618 45.455 0.00 0.00 0.00 4.40
3545 5790 2.153247 CGAAGTACGTTGAAGTGAGTGC 59.847 50.000 0.00 0.00 37.22 4.40
3564 5809 9.134734 GCACAAATATTTAAATTTTCAGGACGA 57.865 29.630 5.91 0.00 0.00 4.20
3565 5810 8.101510 CGCACAAATATTTAAATTTTCAGGACG 58.898 33.333 5.91 6.28 0.00 4.79
3566 5811 8.921670 ACGCACAAATATTTAAATTTTCAGGAC 58.078 29.630 5.91 0.00 0.00 3.85
3567 5812 9.482627 AACGCACAAATATTTAAATTTTCAGGA 57.517 25.926 5.91 0.00 0.00 3.86
3573 5818 9.615295 AGTCGTAACGCACAAATATTTAAATTT 57.385 25.926 5.91 0.00 0.00 1.82
3574 5819 9.615295 AAGTCGTAACGCACAAATATTTAAATT 57.385 25.926 5.91 0.00 0.00 1.82
3575 5820 9.269415 GAAGTCGTAACGCACAAATATTTAAAT 57.731 29.630 5.89 5.89 0.00 1.40
3576 5821 8.281194 TGAAGTCGTAACGCACAAATATTTAAA 58.719 29.630 0.00 0.00 0.00 1.52
3577 5822 7.794880 TGAAGTCGTAACGCACAAATATTTAA 58.205 30.769 0.00 0.00 0.00 1.52
3578 5823 7.348808 TGAAGTCGTAACGCACAAATATTTA 57.651 32.000 0.00 0.00 0.00 1.40
3579 5824 6.230849 TGAAGTCGTAACGCACAAATATTT 57.769 33.333 0.00 0.00 0.00 1.40
3580 5825 5.849357 TGAAGTCGTAACGCACAAATATT 57.151 34.783 0.00 0.00 0.00 1.28
3581 5826 5.810587 AGATGAAGTCGTAACGCACAAATAT 59.189 36.000 0.00 0.00 0.00 1.28
3582 5827 5.165676 AGATGAAGTCGTAACGCACAAATA 58.834 37.500 0.00 0.00 0.00 1.40
3583 5828 3.994392 AGATGAAGTCGTAACGCACAAAT 59.006 39.130 0.00 0.00 0.00 2.32
3584 5829 3.386486 AGATGAAGTCGTAACGCACAAA 58.614 40.909 0.00 0.00 0.00 2.83
3585 5830 3.021269 AGATGAAGTCGTAACGCACAA 57.979 42.857 0.00 0.00 0.00 3.33
3586 5831 2.717580 AGATGAAGTCGTAACGCACA 57.282 45.000 0.00 0.00 0.00 4.57
3587 5832 6.372185 AGATATAGATGAAGTCGTAACGCAC 58.628 40.000 0.00 0.00 0.00 5.34
3588 5833 6.555812 AGATATAGATGAAGTCGTAACGCA 57.444 37.500 0.00 0.00 0.00 5.24
3641 5886 9.111613 TCAAAATTCATGAAAGCTCACATTTTT 57.888 25.926 13.09 8.31 32.14 1.94
3642 5887 8.665643 TCAAAATTCATGAAAGCTCACATTTT 57.334 26.923 13.09 8.99 33.42 1.82
3643 5888 8.665643 TTCAAAATTCATGAAAGCTCACATTT 57.334 26.923 13.09 2.98 34.04 2.32
3644 5889 8.842358 ATTCAAAATTCATGAAAGCTCACATT 57.158 26.923 13.09 0.00 39.98 2.71
3645 5890 8.842358 AATTCAAAATTCATGAAAGCTCACAT 57.158 26.923 13.09 0.00 39.98 3.21
3646 5891 8.665643 AAATTCAAAATTCATGAAAGCTCACA 57.334 26.923 13.09 0.00 39.98 3.58
3647 5892 9.377383 CAAAATTCAAAATTCATGAAAGCTCAC 57.623 29.630 13.09 0.00 39.98 3.51
3648 5893 8.071368 GCAAAATTCAAAATTCATGAAAGCTCA 58.929 29.630 13.09 0.00 39.98 4.26
3649 5894 8.071368 TGCAAAATTCAAAATTCATGAAAGCTC 58.929 29.630 13.09 2.32 39.98 4.09
3650 5895 7.932335 TGCAAAATTCAAAATTCATGAAAGCT 58.068 26.923 13.09 0.00 39.98 3.74
3651 5896 8.736751 ATGCAAAATTCAAAATTCATGAAAGC 57.263 26.923 13.09 11.19 39.98 3.51
3655 5900 9.885934 CTCAAATGCAAAATTCAAAATTCATGA 57.114 25.926 0.00 0.00 0.00 3.07
3656 5901 9.123709 CCTCAAATGCAAAATTCAAAATTCATG 57.876 29.630 0.00 0.00 0.00 3.07
3657 5902 8.852135 ACCTCAAATGCAAAATTCAAAATTCAT 58.148 25.926 0.00 0.00 0.00 2.57
3658 5903 8.223177 ACCTCAAATGCAAAATTCAAAATTCA 57.777 26.923 0.00 0.00 0.00 2.57
3659 5904 8.562052 AGACCTCAAATGCAAAATTCAAAATTC 58.438 29.630 0.00 0.00 0.00 2.17
3660 5905 8.454570 AGACCTCAAATGCAAAATTCAAAATT 57.545 26.923 0.00 0.00 0.00 1.82
3661 5906 8.454570 AAGACCTCAAATGCAAAATTCAAAAT 57.545 26.923 0.00 0.00 0.00 1.82
3662 5907 7.551974 TGAAGACCTCAAATGCAAAATTCAAAA 59.448 29.630 0.00 0.00 0.00 2.44
3663 5908 7.046652 TGAAGACCTCAAATGCAAAATTCAAA 58.953 30.769 0.00 0.00 0.00 2.69
3664 5909 6.580788 TGAAGACCTCAAATGCAAAATTCAA 58.419 32.000 0.00 0.00 0.00 2.69
3665 5910 6.159299 TGAAGACCTCAAATGCAAAATTCA 57.841 33.333 0.00 0.00 0.00 2.57
3666 5911 6.091713 CCATGAAGACCTCAAATGCAAAATTC 59.908 38.462 0.00 0.00 37.67 2.17
3667 5912 5.935789 CCATGAAGACCTCAAATGCAAAATT 59.064 36.000 0.00 0.00 37.67 1.82
3668 5913 5.246656 TCCATGAAGACCTCAAATGCAAAAT 59.753 36.000 0.00 0.00 37.67 1.82
3669 5914 4.588106 TCCATGAAGACCTCAAATGCAAAA 59.412 37.500 0.00 0.00 37.67 2.44
3670 5915 4.151121 TCCATGAAGACCTCAAATGCAAA 58.849 39.130 0.00 0.00 37.67 3.68
3671 5916 3.760151 CTCCATGAAGACCTCAAATGCAA 59.240 43.478 0.00 0.00 37.67 4.08
3672 5917 3.349927 CTCCATGAAGACCTCAAATGCA 58.650 45.455 0.00 0.00 37.67 3.96
3673 5918 2.098770 GCTCCATGAAGACCTCAAATGC 59.901 50.000 0.00 0.00 37.67 3.56
3674 5919 3.618351 AGCTCCATGAAGACCTCAAATG 58.382 45.455 0.00 0.00 37.67 2.32
3675 5920 3.681034 CGAGCTCCATGAAGACCTCAAAT 60.681 47.826 8.47 0.00 37.67 2.32
3676 5921 2.354103 CGAGCTCCATGAAGACCTCAAA 60.354 50.000 8.47 0.00 37.67 2.69
3677 5922 1.205655 CGAGCTCCATGAAGACCTCAA 59.794 52.381 8.47 0.00 37.67 3.02
3678 5923 0.820226 CGAGCTCCATGAAGACCTCA 59.180 55.000 8.47 0.00 38.81 3.86
3679 5924 0.103937 CCGAGCTCCATGAAGACCTC 59.896 60.000 8.47 0.00 0.00 3.85
3680 5925 1.965754 GCCGAGCTCCATGAAGACCT 61.966 60.000 8.47 0.00 0.00 3.85
3681 5926 1.522580 GCCGAGCTCCATGAAGACC 60.523 63.158 8.47 0.00 0.00 3.85
3682 5927 1.522580 GGCCGAGCTCCATGAAGAC 60.523 63.158 8.47 0.00 0.00 3.01
3683 5928 1.680522 GAGGCCGAGCTCCATGAAGA 61.681 60.000 8.47 0.00 0.00 2.87
3684 5929 1.227497 GAGGCCGAGCTCCATGAAG 60.227 63.158 8.47 0.00 0.00 3.02
3685 5930 2.735772 GGAGGCCGAGCTCCATGAA 61.736 63.158 8.47 0.00 39.45 2.57
3686 5931 3.157252 GGAGGCCGAGCTCCATGA 61.157 66.667 8.47 0.00 39.45 3.07
3687 5932 3.473647 TGGAGGCCGAGCTCCATG 61.474 66.667 8.47 0.00 44.02 3.66
3689 5934 3.393970 CTTGGAGGCCGAGCTCCA 61.394 66.667 8.47 7.35 46.84 3.86
3690 5935 3.077556 TCTTGGAGGCCGAGCTCC 61.078 66.667 8.47 0.00 35.08 4.70
3691 5936 2.498726 CTCTTGGAGGCCGAGCTC 59.501 66.667 2.73 2.73 35.08 4.09
3692 5937 3.780173 GCTCTTGGAGGCCGAGCT 61.780 66.667 18.98 0.00 45.00 4.09
3694 5939 0.393537 AATTGCTCTTGGAGGCCGAG 60.394 55.000 0.00 0.00 36.39 4.63
3695 5940 0.038166 AAATTGCTCTTGGAGGCCGA 59.962 50.000 0.00 0.00 0.00 5.54
3696 5941 0.453390 GAAATTGCTCTTGGAGGCCG 59.547 55.000 0.00 0.00 0.00 6.13
3697 5942 0.820226 GGAAATTGCTCTTGGAGGCC 59.180 55.000 0.00 0.00 0.00 5.19
3698 5943 0.453390 CGGAAATTGCTCTTGGAGGC 59.547 55.000 0.00 0.00 0.00 4.70
3699 5944 1.826385 ACGGAAATTGCTCTTGGAGG 58.174 50.000 0.00 0.00 0.00 4.30
3700 5945 2.554032 ACAACGGAAATTGCTCTTGGAG 59.446 45.455 0.00 0.00 32.47 3.86
3701 5946 2.293122 CACAACGGAAATTGCTCTTGGA 59.707 45.455 0.00 0.00 32.47 3.53
3702 5947 2.664916 CACAACGGAAATTGCTCTTGG 58.335 47.619 0.00 0.00 32.47 3.61
3703 5948 2.053627 GCACAACGGAAATTGCTCTTG 58.946 47.619 0.00 0.00 32.47 3.02
3704 5949 1.680735 TGCACAACGGAAATTGCTCTT 59.319 42.857 0.00 0.00 35.91 2.85
3705 5950 1.317613 TGCACAACGGAAATTGCTCT 58.682 45.000 0.00 0.00 35.91 4.09
3706 5951 2.132740 TTGCACAACGGAAATTGCTC 57.867 45.000 0.00 0.00 35.91 4.26
3707 5952 2.406130 CATTGCACAACGGAAATTGCT 58.594 42.857 0.00 0.00 35.91 3.91
3708 5953 1.136280 GCATTGCACAACGGAAATTGC 60.136 47.619 3.15 0.00 32.47 3.56
3709 5954 1.460359 GGCATTGCACAACGGAAATTG 59.540 47.619 11.39 0.00 35.59 2.32
3710 5955 1.069823 TGGCATTGCACAACGGAAATT 59.930 42.857 11.39 0.00 0.00 1.82
3711 5956 0.678395 TGGCATTGCACAACGGAAAT 59.322 45.000 11.39 0.00 0.00 2.17
3712 5957 0.031857 CTGGCATTGCACAACGGAAA 59.968 50.000 11.39 0.00 0.00 3.13
3713 5958 0.821301 TCTGGCATTGCACAACGGAA 60.821 50.000 11.39 0.00 0.00 4.30
3714 5959 1.228094 TCTGGCATTGCACAACGGA 60.228 52.632 11.39 0.51 0.00 4.69
3715 5960 1.210931 CTCTGGCATTGCACAACGG 59.789 57.895 11.39 0.00 0.00 4.44
3716 5961 1.443194 GCTCTGGCATTGCACAACG 60.443 57.895 11.39 1.95 38.54 4.10
3740 5985 0.179127 CTGCATCCGTCACGTGATCT 60.179 55.000 23.12 3.92 0.00 2.75
3786 6035 8.423349 CCCTGATAATCTGAGATCTATCATTCC 58.577 40.741 18.65 0.00 31.99 3.01
3814 6063 1.482182 TGATCGCTACAGAACAGGCAT 59.518 47.619 0.00 0.00 0.00 4.40
3820 6069 2.010145 TTGCCTGATCGCTACAGAAC 57.990 50.000 0.00 0.00 37.54 3.01
3855 6104 3.376918 GTTTCCTGCCTGCCTGCC 61.377 66.667 0.00 0.00 0.00 4.85


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.