Multiple sequence alignment - TraesCS5A01G221600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G221600 chr5A 100.000 5615 0 0 1 5615 437917588 437911974 0.000000e+00 10370.0
1 TraesCS5A01G221600 chr5A 86.598 97 11 2 3983 4078 597256908 597257003 7.690000e-19 106.0
2 TraesCS5A01G221600 chr5D 90.345 1999 125 34 3179 5131 336424011 336422035 0.000000e+00 2560.0
3 TraesCS5A01G221600 chr5D 84.951 1535 114 55 630 2107 336426598 336425124 0.000000e+00 1447.0
4 TraesCS5A01G221600 chr5D 84.125 863 75 31 2288 3127 336424836 336424013 0.000000e+00 778.0
5 TraesCS5A01G221600 chr5D 88.865 458 19 10 5163 5615 336421938 336421508 8.280000e-148 534.0
6 TraesCS5A01G221600 chr5D 83.298 473 54 9 1 449 336427869 336427398 4.050000e-111 412.0
7 TraesCS5A01G221600 chr5B 92.033 1205 61 19 3935 5131 394744425 394743248 0.000000e+00 1661.0
8 TraesCS5A01G221600 chr5B 84.791 1223 73 51 677 1828 394748104 394746924 0.000000e+00 1123.0
9 TraesCS5A01G221600 chr5B 88.338 746 55 15 2401 3127 394745922 394745190 0.000000e+00 867.0
10 TraesCS5A01G221600 chr5B 85.006 787 62 21 3179 3949 394745188 394744442 0.000000e+00 749.0
11 TraesCS5A01G221600 chr5B 92.241 464 16 4 5163 5615 394743130 394742676 1.710000e-179 640.0
12 TraesCS5A01G221600 chr5B 84.713 628 50 19 28 611 394748844 394748219 2.250000e-163 586.0
13 TraesCS5A01G221600 chr5B 83.333 216 26 7 2136 2348 394746282 394746074 2.060000e-44 191.0
14 TraesCS5A01G221600 chr5B 85.950 121 15 2 1837 1956 394746628 394746509 1.640000e-25 128.0
15 TraesCS5A01G221600 chr5B 84.536 97 13 2 3983 4078 585475625 585475720 1.670000e-15 95.3
16 TraesCS5A01G221600 chr7D 92.208 77 6 0 2585 2661 54437990 54437914 5.950000e-20 110.0
17 TraesCS5A01G221600 chr4A 92.208 77 6 0 2585 2661 670146691 670146615 5.950000e-20 110.0
18 TraesCS5A01G221600 chr7A 90.909 77 7 0 2585 2661 57979309 57979233 2.770000e-18 104.0
19 TraesCS5A01G221600 chr7A 84.536 97 12 3 3738 3833 670951350 670951256 5.990000e-15 93.5
20 TraesCS5A01G221600 chr7A 81.651 109 18 2 3725 3833 58030497 58030391 7.750000e-14 89.8
21 TraesCS5A01G221600 chr7A 94.872 39 2 0 3349 3387 398924516 398924478 1.690000e-05 62.1
22 TraesCS5A01G221600 chr6D 92.857 70 5 0 1270 1339 82560165 82560096 9.950000e-18 102.0
23 TraesCS5A01G221600 chr1B 88.235 85 10 0 2583 2667 604834784 604834700 9.950000e-18 102.0
24 TraesCS5A01G221600 chr1B 97.436 39 1 0 3349 3387 662848120 662848082 3.630000e-07 67.6
25 TraesCS5A01G221600 chr1B 94.872 39 2 0 3349 3387 509149779 509149817 1.690000e-05 62.1
26 TraesCS5A01G221600 chr1D 87.059 85 11 0 2583 2667 444846135 444846051 4.630000e-16 97.1
27 TraesCS5A01G221600 chr1A 87.059 85 11 0 2583 2667 540134983 540134899 4.630000e-16 97.1
28 TraesCS5A01G221600 chrUn 84.375 96 14 1 3738 3833 350172145 350172051 5.990000e-15 93.5
29 TraesCS5A01G221600 chr6A 84.375 96 14 1 3738 3833 15268736 15268642 5.990000e-15 93.5
30 TraesCS5A01G221600 chr3A 84.375 96 14 1 3738 3833 658370216 658370310 5.990000e-15 93.5
31 TraesCS5A01G221600 chr3A 83.333 96 15 1 3738 3833 525285372 525285278 2.790000e-13 87.9
32 TraesCS5A01G221600 chr3A 94.872 39 2 0 3349 3387 700747710 700747672 1.690000e-05 62.1
33 TraesCS5A01G221600 chr2B 83.333 96 15 1 3738 3833 681418101 681418007 2.790000e-13 87.9
34 TraesCS5A01G221600 chr2A 83.333 96 15 1 3738 3833 640490528 640490434 2.790000e-13 87.9
35 TraesCS5A01G221600 chr2A 92.683 41 3 0 3347 3387 4969538 4969498 6.080000e-05 60.2
36 TraesCS5A01G221600 chr7B 86.076 79 8 3 3732 3809 220826525 220826601 1.300000e-11 82.4
37 TraesCS5A01G221600 chr3D 95.556 45 2 0 3343 3387 428242737 428242693 7.800000e-09 73.1
38 TraesCS5A01G221600 chr4B 97.500 40 1 0 3348 3387 623325067 623325106 1.010000e-07 69.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G221600 chr5A 437911974 437917588 5614 True 10370.000 10370 100.000000 1 5615 1 chr5A.!!$R1 5614
1 TraesCS5A01G221600 chr5D 336421508 336427869 6361 True 1146.200 2560 86.316800 1 5615 5 chr5D.!!$R1 5614
2 TraesCS5A01G221600 chr5B 394742676 394748844 6168 True 743.125 1661 87.050625 28 5615 8 chr5B.!!$R1 5587

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
311 337 0.036010 ACCAGTGAAGAAGGGATGCG 60.036 55.0 0.0 0.0 0.0 4.73 F
1538 2268 0.251916 ATCCGCTCGTCATTTTCCCA 59.748 50.0 0.0 0.0 0.0 4.37 F
3154 4491 0.179156 CTGTGATGGCGATGCAAACC 60.179 55.0 0.0 0.0 0.0 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1993 3033 0.248866 CCAAAACACAAGCACCGGTC 60.249 55.0 2.59 0.0 0.0 4.79 R
3414 4754 0.174162 CCTACAACCCCGGAACTACG 59.826 60.0 0.73 0.0 0.0 3.51 R
4630 6038 0.107993 CATCATCAGTCTGGCCACGT 60.108 55.0 0.00 0.0 0.0 4.49 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
44 45 6.095440 GCTTGTCAAATATATCCTGGTGTTGT 59.905 38.462 0.00 0.00 0.00 3.32
49 55 9.353999 GTCAAATATATCCTGGTGTTGTTTTTC 57.646 33.333 0.00 0.00 0.00 2.29
54 60 1.691163 CCTGGTGTTGTTTTTCCCCCT 60.691 52.381 0.00 0.00 0.00 4.79
55 61 2.425102 CCTGGTGTTGTTTTTCCCCCTA 60.425 50.000 0.00 0.00 0.00 3.53
56 62 2.626266 CTGGTGTTGTTTTTCCCCCTAC 59.374 50.000 0.00 0.00 0.00 3.18
58 64 3.032459 GGTGTTGTTTTTCCCCCTACAA 58.968 45.455 0.00 0.00 0.00 2.41
59 65 3.451540 GGTGTTGTTTTTCCCCCTACAAA 59.548 43.478 0.00 0.00 32.84 2.83
61 67 3.133183 TGTTGTTTTTCCCCCTACAAAGC 59.867 43.478 0.00 0.00 32.84 3.51
62 68 2.321719 TGTTTTTCCCCCTACAAAGCC 58.678 47.619 0.00 0.00 0.00 4.35
63 69 1.271379 GTTTTTCCCCCTACAAAGCCG 59.729 52.381 0.00 0.00 0.00 5.52
95 103 2.185387 TCTAGTCGGGCCTTAGCTTTT 58.815 47.619 0.84 0.00 39.73 2.27
104 112 2.798847 GGCCTTAGCTTTTATCGTACGG 59.201 50.000 16.52 0.00 39.73 4.02
106 114 3.714391 CCTTAGCTTTTATCGTACGGCT 58.286 45.455 16.52 16.56 0.00 5.52
134 142 4.372656 GGAATGAGTCCATTTCTAGGTCG 58.627 47.826 0.00 0.00 46.97 4.79
164 172 4.881440 GGGATGCCATGGCGCTCA 62.881 66.667 30.87 14.80 45.51 4.26
190 198 2.436646 ATGTGCTAGTGGTGCCGC 60.437 61.111 0.00 0.00 0.00 6.53
207 232 3.673484 CTGCAACCGTGGGCCAAG 61.673 66.667 8.40 11.04 0.00 3.61
240 265 1.663695 GGCTTCGCTACATTAAGGCA 58.336 50.000 0.00 0.00 43.25 4.75
266 292 2.037902 TGTTGCGTGAGGGACAATAAGA 59.962 45.455 0.00 0.00 0.00 2.10
276 302 2.097466 GGGACAATAAGACACCAATGCG 59.903 50.000 0.00 0.00 0.00 4.73
304 330 5.120830 CCAAAGTTCGATACCAGTGAAGAAG 59.879 44.000 0.00 0.00 0.00 2.85
311 337 0.036010 ACCAGTGAAGAAGGGATGCG 60.036 55.000 0.00 0.00 0.00 4.73
312 338 0.745845 CCAGTGAAGAAGGGATGCGG 60.746 60.000 0.00 0.00 0.00 5.69
323 349 3.876309 AGGGATGCGGTTATGGTTTAT 57.124 42.857 0.00 0.00 0.00 1.40
326 352 3.434299 GGGATGCGGTTATGGTTTATACG 59.566 47.826 0.00 0.00 0.00 3.06
341 368 5.341617 GTTTATACGAGAGTTGTCCTCCTG 58.658 45.833 0.00 0.00 46.40 3.86
353 380 6.601332 AGTTGTCCTCCTGAAAAATCACTTA 58.399 36.000 0.00 0.00 0.00 2.24
354 381 6.486993 AGTTGTCCTCCTGAAAAATCACTTAC 59.513 38.462 0.00 0.00 0.00 2.34
388 415 0.948623 CCGTCGACATGGCTTTCACA 60.949 55.000 17.16 0.00 0.00 3.58
389 416 0.439985 CGTCGACATGGCTTTCACAG 59.560 55.000 17.16 0.00 0.00 3.66
390 417 1.512926 GTCGACATGGCTTTCACAGT 58.487 50.000 11.55 0.00 0.00 3.55
449 476 7.437862 GTGTAACACAATTCATTGACCACATTT 59.562 33.333 6.53 0.00 40.87 2.32
450 477 8.633561 TGTAACACAATTCATTGACCACATTTA 58.366 29.630 6.53 0.00 40.14 1.40
451 478 9.128107 GTAACACAATTCATTGACCACATTTAG 57.872 33.333 6.53 0.00 40.14 1.85
452 479 7.523293 ACACAATTCATTGACCACATTTAGA 57.477 32.000 6.53 0.00 40.14 2.10
453 480 7.950512 ACACAATTCATTGACCACATTTAGAA 58.049 30.769 6.53 0.00 40.14 2.10
454 481 8.587608 ACACAATTCATTGACCACATTTAGAAT 58.412 29.630 6.53 0.00 40.14 2.40
533 1145 6.346120 CGTGCTCGAAATGAGGAGTAATAATG 60.346 42.308 1.00 0.00 46.63 1.90
582 1195 0.594110 TTGCCCGGACGAAAACATTC 59.406 50.000 0.73 0.00 0.00 2.67
616 1229 9.590451 TTTGAAATCCAAAATTCAGATCATAGC 57.410 29.630 0.00 0.00 41.43 2.97
617 1230 8.296211 TGAAATCCAAAATTCAGATCATAGCA 57.704 30.769 0.00 0.00 32.14 3.49
628 1241 9.794685 AATTCAGATCATAGCATATAGTACGTG 57.205 33.333 0.00 0.00 0.00 4.49
648 1296 4.498323 CGTGAGTATAAAACTAGGTGCGTC 59.502 45.833 0.00 0.00 39.07 5.19
771 1435 1.056660 TTTCCCTTTCTGTCCGAGCT 58.943 50.000 0.00 0.00 0.00 4.09
772 1436 0.608640 TTCCCTTTCTGTCCGAGCTC 59.391 55.000 2.73 2.73 0.00 4.09
773 1437 0.541998 TCCCTTTCTGTCCGAGCTCA 60.542 55.000 15.40 0.00 0.00 4.26
774 1438 0.390472 CCCTTTCTGTCCGAGCTCAC 60.390 60.000 15.40 5.85 0.00 3.51
775 1439 0.318441 CCTTTCTGTCCGAGCTCACA 59.682 55.000 15.40 10.56 0.00 3.58
776 1440 1.671261 CCTTTCTGTCCGAGCTCACAG 60.671 57.143 22.28 22.28 41.32 3.66
777 1441 1.270826 CTTTCTGTCCGAGCTCACAGA 59.729 52.381 25.32 25.32 45.86 3.41
778 1442 2.560954 TCTGTCCGAGCTCACAGAG 58.439 57.895 25.32 14.16 43.31 3.35
779 1443 0.962855 TCTGTCCGAGCTCACAGAGG 60.963 60.000 25.32 13.97 43.31 3.69
780 1444 2.183046 GTCCGAGCTCACAGAGGC 59.817 66.667 15.40 0.00 0.00 4.70
1196 1894 2.829458 GTACGCTCCCTCGCTCCT 60.829 66.667 0.00 0.00 0.00 3.69
1202 1900 4.507916 TCCCTCGCTCCTCCCTCG 62.508 72.222 0.00 0.00 0.00 4.63
1206 1904 4.426313 TCGCTCCTCCCTCGCTCA 62.426 66.667 0.00 0.00 0.00 4.26
1220 1922 0.878523 CGCTCACGTCACTTCCCAAA 60.879 55.000 0.00 0.00 33.53 3.28
1226 1928 1.292061 CGTCACTTCCCAAACGAACA 58.708 50.000 0.00 0.00 37.31 3.18
1227 1929 1.666700 CGTCACTTCCCAAACGAACAA 59.333 47.619 0.00 0.00 37.31 2.83
1228 1930 2.538132 CGTCACTTCCCAAACGAACAAC 60.538 50.000 0.00 0.00 37.31 3.32
1230 1932 1.018910 ACTTCCCAAACGAACAACCG 58.981 50.000 0.00 0.00 0.00 4.44
1231 1933 0.317519 CTTCCCAAACGAACAACCGC 60.318 55.000 0.00 0.00 0.00 5.68
1233 1935 2.051703 CCAAACGAACAACCGCCG 60.052 61.111 0.00 0.00 0.00 6.46
1234 1936 2.724358 CAAACGAACAACCGCCGC 60.724 61.111 0.00 0.00 0.00 6.53
1235 1937 3.956317 AAACGAACAACCGCCGCC 61.956 61.111 0.00 0.00 0.00 6.13
1411 2132 0.611714 ACCGGCTTCGTTAATCCACT 59.388 50.000 0.00 0.00 0.00 4.00
1414 2135 0.733150 GGCTTCGTTAATCCACTGCC 59.267 55.000 0.00 0.00 0.00 4.85
1415 2136 0.373716 GCTTCGTTAATCCACTGCCG 59.626 55.000 0.00 0.00 0.00 5.69
1416 2137 2.004583 CTTCGTTAATCCACTGCCGA 57.995 50.000 0.00 0.00 0.00 5.54
1505 2235 4.120331 GTCACGGCCTTGGCATGC 62.120 66.667 9.30 9.90 0.00 4.06
1532 2262 4.402192 CGTGATCCGCTCGTCATT 57.598 55.556 0.00 0.00 0.00 2.57
1533 2263 2.665777 CGTGATCCGCTCGTCATTT 58.334 52.632 0.00 0.00 0.00 2.32
1534 2264 0.999406 CGTGATCCGCTCGTCATTTT 59.001 50.000 0.00 0.00 0.00 1.82
1536 2266 1.327764 GTGATCCGCTCGTCATTTTCC 59.672 52.381 0.00 0.00 0.00 3.13
1538 2268 0.251916 ATCCGCTCGTCATTTTCCCA 59.748 50.000 0.00 0.00 0.00 4.37
1539 2269 0.672401 TCCGCTCGTCATTTTCCCAC 60.672 55.000 0.00 0.00 0.00 4.61
1541 2271 1.644786 CGCTCGTCATTTTCCCACCC 61.645 60.000 0.00 0.00 0.00 4.61
1543 2273 1.003112 TCGTCATTTTCCCACCCCG 60.003 57.895 0.00 0.00 0.00 5.73
1545 2275 0.891904 CGTCATTTTCCCACCCCGTT 60.892 55.000 0.00 0.00 0.00 4.44
1546 2276 1.611148 CGTCATTTTCCCACCCCGTTA 60.611 52.381 0.00 0.00 0.00 3.18
1549 2293 3.321396 GTCATTTTCCCACCCCGTTAAAA 59.679 43.478 0.00 0.00 0.00 1.52
1556 2300 4.995536 TCCCACCCCGTTAAAAAGAATTA 58.004 39.130 0.00 0.00 0.00 1.40
1557 2301 4.766373 TCCCACCCCGTTAAAAAGAATTAC 59.234 41.667 0.00 0.00 0.00 1.89
1560 2304 5.463286 CACCCCGTTAAAAAGAATTACCAC 58.537 41.667 0.00 0.00 0.00 4.16
1566 2310 7.360946 CCCGTTAAAAAGAATTACCACAGAGAG 60.361 40.741 0.00 0.00 0.00 3.20
1573 2317 9.628500 AAAAGAATTACCACAGAGAGTTTTACT 57.372 29.630 0.00 0.00 0.00 2.24
1588 2332 3.961225 TACTCGGCCGGGCTAACCA 62.961 63.158 28.82 0.73 40.22 3.67
1589 2333 4.090588 CTCGGCCGGGCTAACCAA 62.091 66.667 27.83 0.26 40.22 3.67
1590 2334 4.397832 TCGGCCGGGCTAACCAAC 62.398 66.667 27.83 0.00 40.22 3.77
1592 2336 4.710167 GGCCGGGCTAACCAACGT 62.710 66.667 22.87 0.00 40.22 3.99
1593 2337 3.122971 GCCGGGCTAACCAACGTC 61.123 66.667 12.87 0.00 40.22 4.34
1594 2338 2.812178 CCGGGCTAACCAACGTCG 60.812 66.667 0.00 0.00 40.22 5.12
1595 2339 2.048877 CGGGCTAACCAACGTCGT 60.049 61.111 0.00 0.00 40.22 4.34
1597 2341 2.090524 GGGCTAACCAACGTCGTCG 61.091 63.158 0.00 0.00 39.85 5.12
1607 2351 2.426261 CGTCGTCGTCGTTGCTGA 60.426 61.111 3.67 0.00 38.33 4.26
1608 2352 1.796355 CGTCGTCGTCGTTGCTGAT 60.796 57.895 3.67 0.00 38.33 2.90
1609 2353 1.696644 GTCGTCGTCGTTGCTGATG 59.303 57.895 1.33 0.00 38.33 3.07
1610 2354 0.728129 GTCGTCGTCGTTGCTGATGA 60.728 55.000 1.33 0.00 38.33 2.92
1679 2423 0.748005 CGGCATTGAAGTACTGGGGG 60.748 60.000 0.00 0.00 0.00 5.40
1728 2472 1.148027 GGTACCCTACCCTACCCTACC 59.852 61.905 0.00 0.00 43.18 3.18
1729 2473 1.148027 GTACCCTACCCTACCCTACCC 59.852 61.905 0.00 0.00 0.00 3.69
1730 2474 1.307214 ACCCTACCCTACCCTACCCC 61.307 65.000 0.00 0.00 0.00 4.95
1731 2475 1.154688 CCTACCCTACCCTACCCCG 59.845 68.421 0.00 0.00 0.00 5.73
1732 2476 1.532555 CTACCCTACCCTACCCCGC 60.533 68.421 0.00 0.00 0.00 6.13
1733 2477 3.086764 TACCCTACCCTACCCCGCC 62.087 68.421 0.00 0.00 0.00 6.13
1793 2537 0.323725 TCTAGTCCACCCGTACCACC 60.324 60.000 0.00 0.00 0.00 4.61
1794 2538 1.660560 CTAGTCCACCCGTACCACCG 61.661 65.000 0.00 0.00 0.00 4.94
1798 2542 4.090588 CACCCGTACCACCGCCAT 62.091 66.667 0.00 0.00 0.00 4.40
1828 2572 0.742635 GCCAGCACAGGAGTAGAAGC 60.743 60.000 0.00 0.00 0.00 3.86
1832 2576 1.082690 GCACAGGAGTAGAAGCTTGC 58.917 55.000 2.10 0.00 0.00 4.01
1835 2579 3.341823 CACAGGAGTAGAAGCTTGCAAT 58.658 45.455 2.10 0.00 0.00 3.56
1871 2909 6.935741 TTTCATTTTCTTTCGAGAACCTCA 57.064 33.333 0.00 0.00 0.00 3.86
1876 2914 3.489180 TCTTTCGAGAACCTCATCGTC 57.511 47.619 0.00 0.00 39.86 4.20
1903 2941 2.383245 CTGTCGGTTGGCACACCTCT 62.383 60.000 14.16 0.00 39.29 3.69
1907 2945 1.968540 GGTTGGCACACCTCTGAGC 60.969 63.158 10.41 0.00 39.29 4.26
1910 2948 2.116983 TTGGCACACCTCTGAGCTCC 62.117 60.000 12.15 0.00 39.29 4.70
1911 2949 2.125753 GCACACCTCTGAGCTCCG 60.126 66.667 12.15 4.74 31.71 4.63
1913 2951 1.510383 CACACCTCTGAGCTCCGAG 59.490 63.158 24.00 24.00 0.00 4.63
1914 2952 2.347322 ACACCTCTGAGCTCCGAGC 61.347 63.158 25.16 12.80 42.84 5.03
1926 2964 0.658897 CTCCGAGCTCGAGTTCTACC 59.341 60.000 36.59 2.65 43.02 3.18
1935 2973 0.387622 CGAGTTCTACCGCCGACAAA 60.388 55.000 0.00 0.00 0.00 2.83
1960 2998 1.268265 GAAAATCAATTGTCGGCGGC 58.732 50.000 3.62 3.62 0.00 6.53
1966 3004 2.760159 AATTGTCGGCGGCCATTCG 61.760 57.895 20.71 4.82 0.00 3.34
1968 3006 4.690719 TGTCGGCGGCCATTCGTT 62.691 61.111 20.71 0.00 0.00 3.85
1970 3008 4.690719 TCGGCGGCCATTCGTTGT 62.691 61.111 20.71 0.00 0.00 3.32
1973 3013 1.448893 GGCGGCCATTCGTTGTAGA 60.449 57.895 15.62 0.00 0.00 2.59
1977 3017 1.348594 GCCATTCGTTGTAGAGCGC 59.651 57.895 0.00 0.00 0.00 5.92
1985 3025 0.297820 GTTGTAGAGCGCGAATTCGG 59.702 55.000 27.78 18.60 40.23 4.30
1991 3031 2.621000 GCGCGAATTCGGTGCTAG 59.379 61.111 27.78 0.00 40.23 3.42
1993 3033 1.812214 GCGCGAATTCGGTGCTAGAG 61.812 60.000 27.78 2.05 40.23 2.43
2001 3041 2.184579 GGTGCTAGAGACCGGTGC 59.815 66.667 14.63 9.89 0.00 5.01
2004 3044 0.737715 GTGCTAGAGACCGGTGCTTG 60.738 60.000 14.63 11.51 0.00 4.01
2011 3051 0.738389 AGACCGGTGCTTGTGTTTTG 59.262 50.000 14.63 0.00 0.00 2.44
2022 3066 4.869297 TGCTTGTGTTTTGGACAGATTTTG 59.131 37.500 0.00 0.00 39.39 2.44
2057 3101 7.369607 TGTTCAATTATCACTGTGTGGAATTG 58.630 34.615 23.32 23.32 42.09 2.32
2063 3107 1.069022 CACTGTGTGGAATTGGCTTCG 60.069 52.381 0.00 0.00 34.45 3.79
2065 3109 1.197721 CTGTGTGGAATTGGCTTCGTC 59.802 52.381 0.00 0.00 34.45 4.20
2069 3113 2.293122 TGTGGAATTGGCTTCGTCTTTG 59.707 45.455 0.00 0.00 34.45 2.77
2085 3152 9.582431 CTTCGTCTTTGGAAATATACACTAGAA 57.418 33.333 0.00 0.00 0.00 2.10
2129 3329 7.481275 TTTTCTGCACAAATGAATCCTTTTC 57.519 32.000 0.00 0.00 0.00 2.29
2134 3334 8.246180 TCTGCACAAATGAATCCTTTTCTAATC 58.754 33.333 0.00 0.00 0.00 1.75
2145 3353 7.823745 ATCCTTTTCTAATCTGTTGTTGTGT 57.176 32.000 0.00 0.00 0.00 3.72
2149 3357 7.857885 CCTTTTCTAATCTGTTGTTGTGTTCTC 59.142 37.037 0.00 0.00 0.00 2.87
2180 3388 5.966742 TGCAGCTGTCTATATACGAAGAT 57.033 39.130 16.64 0.00 0.00 2.40
2253 3461 8.642432 CACTCAGGAGGTAATGACTATCAAATA 58.358 37.037 0.83 0.00 0.00 1.40
2254 3462 9.213777 ACTCAGGAGGTAATGACTATCAAATAA 57.786 33.333 0.83 0.00 0.00 1.40
2298 3506 0.902531 CGCTCCCCCTTCAGTTTCTA 59.097 55.000 0.00 0.00 0.00 2.10
2306 3514 7.337826 TCCCCCTTCAGTTTCTATAGAAAAA 57.662 36.000 25.73 16.84 44.58 1.94
2307 3515 7.939781 TCCCCCTTCAGTTTCTATAGAAAAAT 58.060 34.615 25.73 16.30 44.58 1.82
2308 3516 9.064602 TCCCCCTTCAGTTTCTATAGAAAAATA 57.935 33.333 25.73 13.15 44.58 1.40
2309 3517 9.121658 CCCCCTTCAGTTTCTATAGAAAAATAC 57.878 37.037 25.73 15.98 44.58 1.89
2310 3518 9.681062 CCCCTTCAGTTTCTATAGAAAAATACA 57.319 33.333 25.73 10.92 44.58 2.29
2397 3704 8.099537 ACTGATGTCCATCTATGTGATATTTCC 58.900 37.037 8.61 0.00 38.60 3.13
2398 3705 7.397221 TGATGTCCATCTATGTGATATTTCCC 58.603 38.462 8.61 0.00 38.60 3.97
2414 3721 0.250901 TCCCTCACAGGAAAAGCAGC 60.251 55.000 0.00 0.00 37.67 5.25
2470 3777 1.327460 CGCAAGGTAACATCATCCGTG 59.673 52.381 0.00 0.00 41.41 4.94
2476 3783 3.706594 AGGTAACATCATCCGTGACATCT 59.293 43.478 0.00 0.00 37.14 2.90
2480 3787 4.060038 ACATCATCCGTGACATCTAACC 57.940 45.455 0.00 0.00 37.14 2.85
2492 3799 6.352516 GTGACATCTAACCAGATTTCTCCAT 58.647 40.000 3.30 0.00 39.62 3.41
2541 3852 9.415544 GCATGAGAGTAACTTGATTTTGAAAAT 57.584 29.630 2.27 2.27 0.00 1.82
2556 3867 7.493743 TTTTGAAAATCAAATCCCACACATG 57.506 32.000 6.38 0.00 44.75 3.21
2577 3888 8.429299 CACATGTGTATTCATTCACAACAAATG 58.571 33.333 18.03 0.00 45.51 2.32
2690 4005 9.631452 ACGTACTCTACCTTGTAAAATTAACTC 57.369 33.333 0.00 0.00 0.00 3.01
2691 4006 9.852091 CGTACTCTACCTTGTAAAATTAACTCT 57.148 33.333 0.00 0.00 0.00 3.24
2698 4013 8.990163 ACCTTGTAAAATTAACTCTCTTCCAA 57.010 30.769 0.00 0.00 0.00 3.53
2703 4018 9.691362 TGTAAAATTAACTCTCTTCCAAAATGC 57.309 29.630 0.00 0.00 0.00 3.56
2718 4033 4.082081 CCAAAATGCCATGTCTCTTTAGCA 60.082 41.667 0.00 0.00 34.28 3.49
2743 4058 3.506067 ACCACAAAATACAAGTAGCCAGC 59.494 43.478 0.00 0.00 0.00 4.85
2777 4092 2.286184 GCCTCAATAAATGGCGTGTACG 60.286 50.000 0.00 0.00 43.27 3.67
2815 4130 8.691727 CATAAAATCTTCAATCGTACTACGGAG 58.308 37.037 8.71 0.00 42.81 4.63
2831 4153 4.757019 ACGGAGTAGATAGTGAGTGAGA 57.243 45.455 0.00 0.00 41.94 3.27
2832 4154 4.699637 ACGGAGTAGATAGTGAGTGAGAG 58.300 47.826 0.00 0.00 41.94 3.20
2833 4155 4.162698 ACGGAGTAGATAGTGAGTGAGAGT 59.837 45.833 0.00 0.00 41.94 3.24
2834 4156 4.509970 CGGAGTAGATAGTGAGTGAGAGTG 59.490 50.000 0.00 0.00 0.00 3.51
2835 4157 4.274950 GGAGTAGATAGTGAGTGAGAGTGC 59.725 50.000 0.00 0.00 0.00 4.40
2853 4175 2.158449 GTGCGAGACTGTTCATGAAAGG 59.842 50.000 10.35 8.43 0.00 3.11
2879 4201 0.248134 CTGAGTCGTACTAGCGGTGC 60.248 60.000 0.00 0.00 0.00 5.01
2910 4239 3.759815 ACACTCCTAGACCAGTACCAT 57.240 47.619 0.00 0.00 0.00 3.55
2911 4240 3.366396 ACACTCCTAGACCAGTACCATG 58.634 50.000 0.00 0.00 0.00 3.66
2920 4249 0.248907 CCAGTACCATGAGCGTACCG 60.249 60.000 0.00 0.00 37.41 4.02
2937 4266 2.983030 GCATGGGCACACGGTGAA 60.983 61.111 16.29 0.00 40.72 3.18
2977 4314 2.027745 CCATCACAGTCCAGCTTAGTGT 60.028 50.000 1.20 1.20 0.00 3.55
2979 4316 1.269723 TCACAGTCCAGCTTAGTGTCG 59.730 52.381 3.74 1.86 0.00 4.35
2982 4319 1.135257 CAGTCCAGCTTAGTGTCGAGG 60.135 57.143 0.00 0.00 0.00 4.63
3019 4356 1.912043 AGCTTGACCAGATAGTTGGCT 59.088 47.619 0.00 0.00 42.18 4.75
3033 4370 3.007635 AGTTGGCTAACTAATTCGTGCC 58.992 45.455 14.53 4.92 45.07 5.01
3062 4399 2.798499 GCTGAAATGCCTGCTAATGCTG 60.798 50.000 0.00 0.00 40.48 4.41
3072 4409 2.612672 CTGCTAATGCTGATCAGGTGTG 59.387 50.000 23.89 0.00 40.01 3.82
3076 4413 3.572632 AATGCTGATCAGGTGTGCTAT 57.427 42.857 23.89 4.36 0.00 2.97
3085 4422 2.104792 TCAGGTGTGCTATGATTAGGCC 59.895 50.000 0.00 0.00 0.00 5.19
3093 4430 4.396166 GTGCTATGATTAGGCCGCAATTAT 59.604 41.667 12.75 12.75 0.00 1.28
3094 4431 5.584649 GTGCTATGATTAGGCCGCAATTATA 59.415 40.000 13.40 13.40 0.00 0.98
3097 4434 6.260936 GCTATGATTAGGCCGCAATTATATGT 59.739 38.462 14.06 0.00 0.00 2.29
3130 4467 3.417069 CTGTTCCCCATCACAGTTACA 57.583 47.619 0.00 0.00 36.44 2.41
3131 4468 3.955471 CTGTTCCCCATCACAGTTACAT 58.045 45.455 0.00 0.00 36.44 2.29
3132 4469 3.941483 CTGTTCCCCATCACAGTTACATC 59.059 47.826 0.00 0.00 36.44 3.06
3133 4470 3.279434 GTTCCCCATCACAGTTACATCC 58.721 50.000 0.00 0.00 0.00 3.51
3134 4471 2.845659 TCCCCATCACAGTTACATCCT 58.154 47.619 0.00 0.00 0.00 3.24
3135 4472 2.771943 TCCCCATCACAGTTACATCCTC 59.228 50.000 0.00 0.00 0.00 3.71
3136 4473 2.774234 CCCCATCACAGTTACATCCTCT 59.226 50.000 0.00 0.00 0.00 3.69
3137 4474 3.432749 CCCCATCACAGTTACATCCTCTG 60.433 52.174 0.00 0.00 35.60 3.35
3138 4475 3.198635 CCCATCACAGTTACATCCTCTGT 59.801 47.826 0.00 0.00 42.14 3.41
3143 4480 4.478206 ACAGTTACATCCTCTGTGATGG 57.522 45.455 12.23 0.00 45.16 3.51
3144 4481 3.201290 CAGTTACATCCTCTGTGATGGC 58.799 50.000 12.23 0.00 45.16 4.40
3145 4482 2.159043 AGTTACATCCTCTGTGATGGCG 60.159 50.000 12.23 0.00 45.16 5.69
3146 4483 1.775385 TACATCCTCTGTGATGGCGA 58.225 50.000 12.23 0.00 45.16 5.54
3147 4484 1.126488 ACATCCTCTGTGATGGCGAT 58.874 50.000 12.23 0.00 45.16 4.58
3148 4485 1.202615 ACATCCTCTGTGATGGCGATG 60.203 52.381 12.23 0.00 45.16 3.84
3149 4486 0.250209 ATCCTCTGTGATGGCGATGC 60.250 55.000 0.00 0.00 0.00 3.91
3150 4487 1.153309 CCTCTGTGATGGCGATGCA 60.153 57.895 0.00 0.00 0.00 3.96
3151 4488 0.745486 CCTCTGTGATGGCGATGCAA 60.745 55.000 0.00 0.00 0.00 4.08
3152 4489 1.089112 CTCTGTGATGGCGATGCAAA 58.911 50.000 0.00 0.00 0.00 3.68
3153 4490 0.804364 TCTGTGATGGCGATGCAAAC 59.196 50.000 0.00 0.00 0.00 2.93
3154 4491 0.179156 CTGTGATGGCGATGCAAACC 60.179 55.000 0.00 0.00 0.00 3.27
3155 4492 1.226379 GTGATGGCGATGCAAACCG 60.226 57.895 0.00 0.00 0.00 4.44
3160 4497 3.487202 GCGATGCAAACCGCTCGA 61.487 61.111 19.57 0.00 46.96 4.04
3161 4498 3.022401 GCGATGCAAACCGCTCGAA 62.022 57.895 19.57 0.00 46.96 3.71
3162 4499 1.059369 CGATGCAAACCGCTCGAAG 59.941 57.895 0.00 0.00 41.09 3.79
3163 4500 1.351430 CGATGCAAACCGCTCGAAGA 61.351 55.000 0.00 0.00 41.09 2.87
3174 4511 4.069232 TCGAAGAGGCTGCCGGTG 62.069 66.667 13.96 3.12 0.00 4.94
3270 4607 2.886859 GTGATATGTCGCGTCCCAG 58.113 57.895 5.77 0.00 0.00 4.45
3281 4618 1.740380 CGCGTCCCAGATGTGATCTTT 60.740 52.381 0.00 0.00 37.58 2.52
3293 4630 7.040892 CCAGATGTGATCTTTGAAAGAAGAACA 60.041 37.037 12.10 15.34 41.63 3.18
3296 4633 6.795399 TGTGATCTTTGAAAGAAGAACAACC 58.205 36.000 12.10 1.55 39.25 3.77
3297 4634 6.603201 TGTGATCTTTGAAAGAAGAACAACCT 59.397 34.615 12.10 0.00 39.25 3.50
3298 4635 7.773224 TGTGATCTTTGAAAGAAGAACAACCTA 59.227 33.333 12.10 0.00 39.25 3.08
3299 4636 8.286097 GTGATCTTTGAAAGAAGAACAACCTAG 58.714 37.037 12.10 0.00 39.25 3.02
3300 4637 8.210946 TGATCTTTGAAAGAAGAACAACCTAGA 58.789 33.333 12.10 0.00 41.63 2.43
3325 4665 9.098355 GACTAGAGAACACATGCACAAAATATA 57.902 33.333 0.00 0.00 0.00 0.86
3352 4692 8.190326 TCTTCTGAGTTAGAAATGTTCTACCA 57.810 34.615 0.00 0.00 44.47 3.25
3357 4697 6.051179 AGTTAGAAATGTTCTACCACCTCC 57.949 41.667 0.00 0.00 41.70 4.30
3380 4720 9.868389 CTCCGTAACTTTTTATAAGACGTTTTT 57.132 29.630 0.00 0.00 0.00 1.94
3393 4733 4.656041 AGACGTTTTTAGAGTCGGTATCG 58.344 43.478 0.00 0.00 39.65 2.92
3395 4735 5.351465 AGACGTTTTTAGAGTCGGTATCGTA 59.649 40.000 0.00 0.00 39.65 3.43
3398 4738 5.450385 CGTTTTTAGAGTCGGTATCGTACTG 59.550 44.000 5.41 0.00 37.69 2.74
3410 4750 2.109609 TCGTACTGTGAACACGTGTC 57.890 50.000 23.61 15.57 37.02 3.67
3412 4752 0.501435 GTACTGTGAACACGTGTCGC 59.499 55.000 23.61 20.44 0.00 5.19
3413 4753 0.382873 TACTGTGAACACGTGTCGCT 59.617 50.000 23.61 6.32 0.00 4.93
3414 4754 0.870307 ACTGTGAACACGTGTCGCTC 60.870 55.000 23.61 16.52 0.00 5.03
3419 4759 0.385223 GAACACGTGTCGCTCGTAGT 60.385 55.000 23.61 1.90 39.55 2.73
3421 4761 0.385223 ACACGTGTCGCTCGTAGTTC 60.385 55.000 17.22 0.00 39.55 3.01
3547 4888 3.917760 GATGAGGTCTCGGCCGGG 61.918 72.222 27.83 25.23 0.00 5.73
3616 4957 4.382320 GACCCCAGCAACGCCGTA 62.382 66.667 0.00 0.00 0.00 4.02
3617 4958 4.692475 ACCCCAGCAACGCCGTAC 62.692 66.667 0.00 0.00 0.00 3.67
3643 4984 1.172812 AACTTCCAGCGGTCCAAAGC 61.173 55.000 0.00 0.00 0.00 3.51
3681 5023 2.684881 ACAGAAGTTCAGTTGCACTTGG 59.315 45.455 5.50 0.00 31.92 3.61
3699 5053 1.136891 TGGTGGCTAGTGACGATGATG 59.863 52.381 0.00 0.00 0.00 3.07
3716 5070 0.250209 ATGGTGATCGGAGCATCAGC 60.250 55.000 15.03 8.60 46.95 4.26
3746 5100 3.083293 GCGGGATTGTAGGGTTGTTTAA 58.917 45.455 0.00 0.00 0.00 1.52
3751 5105 6.071840 CGGGATTGTAGGGTTGTTTAAAATCA 60.072 38.462 0.00 0.00 29.03 2.57
3753 5107 7.256012 GGGATTGTAGGGTTGTTTAAAATCACA 60.256 37.037 0.00 0.00 30.53 3.58
3833 5190 8.751335 ACAATTTTTGTTAGCAGAATTTACGTG 58.249 29.630 0.00 0.00 42.22 4.49
3845 5224 9.216117 AGCAGAATTTACGTGTAGTTAAGATTT 57.784 29.630 0.00 0.00 0.00 2.17
3875 5254 0.105039 GATCCCATCGTCGGAGCTTT 59.895 55.000 0.00 0.00 32.88 3.51
3878 5257 1.084370 CCCATCGTCGGAGCTTTGAC 61.084 60.000 8.74 8.74 0.00 3.18
3880 5259 0.108615 CATCGTCGGAGCTTTGACCT 60.109 55.000 12.14 0.19 0.00 3.85
3922 5301 4.455533 TGACTGCCTTAATTGTAGCACTTG 59.544 41.667 0.00 0.00 0.00 3.16
3952 5332 2.032722 ACGAAAAATGCTGCGTCGTTTA 60.033 40.909 0.00 0.00 41.86 2.01
3953 5333 2.968006 CGAAAAATGCTGCGTCGTTTAA 59.032 40.909 0.00 0.00 0.00 1.52
3964 5372 3.242016 TGCGTCGTTTAATAAGCGATCTG 59.758 43.478 14.45 9.24 37.00 2.90
4233 5641 2.679092 CAGCAGGGCATGGAGGAA 59.321 61.111 0.00 0.00 0.00 3.36
4382 5790 2.762887 AGTTCAAGGAGATGATCGAGCA 59.237 45.455 5.53 5.53 0.00 4.26
4419 5827 3.991051 AGCACCACCACGTCCTCG 61.991 66.667 0.00 0.00 43.34 4.63
4709 6119 7.013369 GGGGTTTTGTCAATAGGATAATCAGAC 59.987 40.741 0.00 0.00 0.00 3.51
4717 6127 5.652994 ATAGGATAATCAGACGGAGAAGC 57.347 43.478 0.00 0.00 0.00 3.86
4720 6130 4.162320 AGGATAATCAGACGGAGAAGCAAA 59.838 41.667 0.00 0.00 0.00 3.68
4722 6132 2.393271 ATCAGACGGAGAAGCAAAGG 57.607 50.000 0.00 0.00 0.00 3.11
4723 6133 0.321671 TCAGACGGAGAAGCAAAGGG 59.678 55.000 0.00 0.00 0.00 3.95
4740 6152 1.211457 AGGGCAGAGCAAGATAACAGG 59.789 52.381 0.00 0.00 0.00 4.00
4762 6174 1.369625 ATTGTTACGGTGCAGCTAGC 58.630 50.000 14.92 6.62 45.96 3.42
4772 6184 1.513158 GCAGCTAGCGAGGACTGAA 59.487 57.895 9.55 0.00 31.67 3.02
4782 6194 7.224949 AGCTAGCGAGGACTGAAAATTATTTAC 59.775 37.037 9.55 0.00 0.00 2.01
4924 6336 7.063898 ACGTCTATTGATTCACATGACTTCTTG 59.936 37.037 0.00 0.00 0.00 3.02
4930 6346 7.194607 TGATTCACATGACTTCTTGTCTTTC 57.805 36.000 0.00 0.00 45.54 2.62
4961 6377 9.455847 CGGAAGATTCTTCCATTTCAAATTATC 57.544 33.333 33.93 11.21 38.49 1.75
4980 6397 9.710900 AAATTATCAAAGTTCAGGATTTGTTCC 57.289 29.630 0.00 0.00 45.85 3.62
5021 6438 8.886719 TGCATTTGATCAGTTATGTAGAGAAAG 58.113 33.333 13.00 0.00 0.00 2.62
5080 6497 6.411630 TGTAGTGCGGAAATATGTAAACAC 57.588 37.500 0.00 0.00 0.00 3.32
5100 6517 7.821595 AACACTTGGCAAAACTAAAAGTTAC 57.178 32.000 0.00 0.00 37.47 2.50
5125 6542 9.823647 ACTACCAAAATAGACATACTTCATGAG 57.176 33.333 0.00 0.00 38.10 2.90
5131 6548 2.846206 AGACATACTTCATGAGCCCCAA 59.154 45.455 0.00 0.00 38.10 4.12
5132 6549 3.461085 AGACATACTTCATGAGCCCCAAT 59.539 43.478 0.00 0.00 38.10 3.16
5133 6550 3.559069 ACATACTTCATGAGCCCCAATG 58.441 45.455 0.00 0.00 38.10 2.82
5150 6642 1.374343 ATGCAATCACAGGCGAGCAG 61.374 55.000 0.00 0.00 35.26 4.24
5154 6646 0.613260 AATCACAGGCGAGCAGGTAA 59.387 50.000 0.00 0.00 0.00 2.85
5155 6647 0.108138 ATCACAGGCGAGCAGGTAAC 60.108 55.000 0.00 0.00 0.00 2.50
5156 6648 1.005037 CACAGGCGAGCAGGTAACA 60.005 57.895 0.00 0.00 41.41 2.41
5157 6649 0.602638 CACAGGCGAGCAGGTAACAA 60.603 55.000 0.00 0.00 41.41 2.83
5159 6651 0.320771 CAGGCGAGCAGGTAACAAGT 60.321 55.000 0.00 0.00 41.41 3.16
5190 6693 1.369448 GTCCTCGCTCGCTCGTATG 60.369 63.158 0.00 0.00 0.00 2.39
5193 6696 1.719425 CTCGCTCGCTCGTATGTCG 60.719 63.158 0.00 0.00 41.41 4.35
5194 6697 2.090604 CTCGCTCGCTCGTATGTCGA 62.091 60.000 0.00 0.00 46.83 4.20
5195 6698 1.999289 CGCTCGCTCGTATGTCGAC 60.999 63.158 9.11 9.11 44.01 4.20
5196 6699 1.352404 GCTCGCTCGTATGTCGACT 59.648 57.895 17.92 4.95 44.01 4.18
5197 6700 0.926174 GCTCGCTCGTATGTCGACTG 60.926 60.000 17.92 4.30 44.01 3.51
5198 6701 0.374063 CTCGCTCGTATGTCGACTGT 59.626 55.000 17.92 8.15 44.01 3.55
5199 6702 0.372679 TCGCTCGTATGTCGACTGTC 59.627 55.000 17.92 5.81 44.01 3.51
5200 6703 0.919873 CGCTCGTATGTCGACTGTCG 60.920 60.000 23.33 23.33 44.01 4.35
5201 6704 0.096628 GCTCGTATGTCGACTGTCGT 59.903 55.000 27.16 12.86 44.01 4.34
5214 6717 1.811217 CTGTCGTATCGGCATGTGCG 61.811 60.000 0.00 0.00 41.69 5.34
5328 6836 1.153939 CAGGTCAGAACGAGGCTCG 60.154 63.158 33.42 33.42 46.93 5.03
5331 6839 0.733223 GGTCAGAACGAGGCTCGAAC 60.733 60.000 40.35 29.92 43.74 3.95
5408 6916 2.338984 CCTATCCTGGCGTACGGC 59.661 66.667 32.49 32.49 42.51 5.68
5583 7102 2.406452 CTTTGTCAGCACCCGGTTGC 62.406 60.000 17.45 17.45 43.34 4.17
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
16 17 6.263842 ACACCAGGATATATTTGACAAGCATG 59.736 38.462 0.00 0.00 0.00 4.06
35 36 1.788229 AGGGGGAAAAACAACACCAG 58.212 50.000 0.00 0.00 0.00 4.00
44 45 1.145325 TCGGCTTTGTAGGGGGAAAAA 59.855 47.619 0.00 0.00 0.00 1.94
49 55 0.392595 GAGTTCGGCTTTGTAGGGGG 60.393 60.000 0.00 0.00 0.00 5.40
54 60 2.851263 ACATGGAGTTCGGCTTTGTA 57.149 45.000 0.00 0.00 0.00 2.41
55 61 1.981256 AACATGGAGTTCGGCTTTGT 58.019 45.000 0.00 0.00 34.74 2.83
56 62 2.554032 AGAAACATGGAGTTCGGCTTTG 59.446 45.455 0.00 0.00 40.26 2.77
58 64 2.568623 AGAAACATGGAGTTCGGCTT 57.431 45.000 0.00 0.00 40.26 4.35
59 65 2.567615 ACTAGAAACATGGAGTTCGGCT 59.432 45.455 0.00 0.00 40.26 5.52
61 67 3.179830 CGACTAGAAACATGGAGTTCGG 58.820 50.000 0.00 0.20 40.26 4.30
62 68 3.179830 CCGACTAGAAACATGGAGTTCG 58.820 50.000 0.00 0.00 40.26 3.95
63 69 3.522553 CCCGACTAGAAACATGGAGTTC 58.477 50.000 0.00 0.00 40.26 3.01
95 103 4.338964 TCATTCCTAACAAGCCGTACGATA 59.661 41.667 18.76 0.00 0.00 2.92
104 112 5.649831 AGAAATGGACTCATTCCTAACAAGC 59.350 40.000 0.00 0.00 46.10 4.01
106 114 7.037586 ACCTAGAAATGGACTCATTCCTAACAA 60.038 37.037 0.00 0.00 46.10 2.83
134 142 0.605589 GCATCCCCACCGCCTTATAC 60.606 60.000 0.00 0.00 0.00 1.47
164 172 2.027192 ACCACTAGCACATCCAATCGTT 60.027 45.455 0.00 0.00 0.00 3.85
170 178 1.299648 GGCACCACTAGCACATCCA 59.700 57.895 0.00 0.00 0.00 3.41
190 198 3.673484 CTTGGCCCACGGTTGCAG 61.673 66.667 0.00 0.00 0.00 4.41
195 219 1.283613 TCATATTTCTTGGCCCACGGT 59.716 47.619 0.00 0.00 0.00 4.83
207 232 1.197721 CGAAGCCCGCCATCATATTTC 59.802 52.381 0.00 0.00 0.00 2.17
240 265 0.317479 GTCCCTCACGCAACACTACT 59.683 55.000 0.00 0.00 0.00 2.57
266 292 0.314935 CTTTGGCTTCGCATTGGTGT 59.685 50.000 0.00 0.00 0.00 4.16
276 302 3.125316 CACTGGTATCGAACTTTGGCTTC 59.875 47.826 0.00 0.00 0.00 3.86
288 314 3.722147 CATCCCTTCTTCACTGGTATCG 58.278 50.000 0.00 0.00 0.00 2.92
294 320 0.036010 ACCGCATCCCTTCTTCACTG 60.036 55.000 0.00 0.00 0.00 3.66
304 330 3.434299 CGTATAAACCATAACCGCATCCC 59.566 47.826 0.00 0.00 0.00 3.85
311 337 6.478016 GGACAACTCTCGTATAAACCATAACC 59.522 42.308 0.00 0.00 0.00 2.85
312 338 7.263496 AGGACAACTCTCGTATAAACCATAAC 58.737 38.462 0.00 0.00 0.00 1.89
323 349 2.873094 TCAGGAGGACAACTCTCGTA 57.127 50.000 0.00 0.00 45.83 3.43
326 352 5.180304 GTGATTTTTCAGGAGGACAACTCTC 59.820 44.000 0.00 0.00 45.83 3.20
341 368 8.895932 ATTACATTGCTCGTAAGTGATTTTTC 57.104 30.769 0.00 0.00 32.63 2.29
353 380 2.794981 CGACGGAGATTACATTGCTCGT 60.795 50.000 0.00 0.00 0.00 4.18
354 381 1.781429 CGACGGAGATTACATTGCTCG 59.219 52.381 0.00 0.00 0.00 5.03
428 455 7.523293 TCTAAATGTGGTCAATGAATTGTGT 57.477 32.000 3.10 0.00 38.84 3.72
450 477 9.899226 GGCGCTTTCATTTAAGAAATATATTCT 57.101 29.630 7.64 0.00 36.94 2.40
451 478 9.677567 TGGCGCTTTCATTTAAGAAATATATTC 57.322 29.630 7.64 0.00 36.94 1.75
453 480 9.463443 GTTGGCGCTTTCATTTAAGAAATATAT 57.537 29.630 7.64 0.00 36.94 0.86
454 481 7.642194 CGTTGGCGCTTTCATTTAAGAAATATA 59.358 33.333 7.64 0.00 36.94 0.86
455 482 6.472163 CGTTGGCGCTTTCATTTAAGAAATAT 59.528 34.615 7.64 0.00 36.94 1.28
457 484 4.621034 CGTTGGCGCTTTCATTTAAGAAAT 59.379 37.500 7.64 0.00 36.94 2.17
461 1073 2.250188 CCGTTGGCGCTTTCATTTAAG 58.750 47.619 7.64 0.00 36.67 1.85
464 1076 0.318614 CACCGTTGGCGCTTTCATTT 60.319 50.000 7.64 0.00 36.67 2.32
475 1087 5.303747 TGATTTACTAAATGCACCGTTGG 57.696 39.130 0.00 0.00 0.00 3.77
533 1145 8.648557 AGGCATCTTTTCTTAAAAACTTTGTC 57.351 30.769 0.00 0.00 31.23 3.18
543 1156 7.255451 CGGGCAAATATAGGCATCTTTTCTTAA 60.255 37.037 4.42 0.00 0.00 1.85
554 1167 0.250124 CGTCCGGGCAAATATAGGCA 60.250 55.000 6.96 0.00 0.00 4.75
564 1177 0.535328 TGAATGTTTTCGTCCGGGCA 60.535 50.000 6.96 0.00 34.39 5.36
582 1195 9.925268 CTGAATTTTGGATTTCAAAGTTTTCTG 57.075 29.630 0.29 2.63 45.00 3.02
620 1233 7.465916 CGCACCTAGTTTTATACTCACGTACTA 60.466 40.741 0.00 0.00 38.33 1.82
621 1234 6.558909 GCACCTAGTTTTATACTCACGTACT 58.441 40.000 0.00 0.00 38.33 2.73
622 1235 5.453587 CGCACCTAGTTTTATACTCACGTAC 59.546 44.000 0.00 0.00 38.33 3.67
623 1236 5.123820 ACGCACCTAGTTTTATACTCACGTA 59.876 40.000 0.00 0.00 38.33 3.57
624 1237 4.082571 ACGCACCTAGTTTTATACTCACGT 60.083 41.667 0.00 0.00 38.33 4.49
625 1238 4.418392 ACGCACCTAGTTTTATACTCACG 58.582 43.478 0.00 0.00 38.33 4.35
626 1239 4.498323 CGACGCACCTAGTTTTATACTCAC 59.502 45.833 0.00 0.00 38.33 3.51
627 1240 4.395854 TCGACGCACCTAGTTTTATACTCA 59.604 41.667 0.00 0.00 38.33 3.41
628 1241 4.913376 TCGACGCACCTAGTTTTATACTC 58.087 43.478 0.00 0.00 38.33 2.59
641 1289 2.106683 CCCCAAATCTCGACGCACC 61.107 63.158 0.00 0.00 0.00 5.01
648 1296 2.824041 CCGGTGCCCCAAATCTCG 60.824 66.667 0.00 0.00 0.00 4.04
670 1318 0.806492 GGTCTAGCGCTGGTGTTAGC 60.806 60.000 22.90 6.93 40.29 3.09
671 1319 0.179108 GGGTCTAGCGCTGGTGTTAG 60.179 60.000 22.90 8.42 0.00 2.34
672 1320 0.613853 AGGGTCTAGCGCTGGTGTTA 60.614 55.000 22.90 0.00 39.06 2.41
673 1321 1.913762 AGGGTCTAGCGCTGGTGTT 60.914 57.895 22.90 1.97 39.06 3.32
724 1388 3.219198 GATGTGATTGGCCGCCCC 61.219 66.667 7.03 0.00 0.00 5.80
771 1435 3.443925 CCTCGCTCGCCTCTGTGA 61.444 66.667 0.00 0.00 0.00 3.58
772 1436 4.504916 CCCTCGCTCGCCTCTGTG 62.505 72.222 0.00 0.00 0.00 3.66
811 1475 0.392193 AAATGAGCGCACAGGAGGAG 60.392 55.000 14.07 0.00 0.00 3.69
1044 1736 4.629115 GCGTTGCTGTTTGCCGCT 62.629 61.111 0.00 0.00 44.73 5.52
1196 1894 1.863662 GAAGTGACGTGAGCGAGGGA 61.864 60.000 0.00 0.00 42.00 4.20
1198 1896 1.444553 GGAAGTGACGTGAGCGAGG 60.445 63.158 0.00 0.00 42.00 4.63
1199 1897 1.444553 GGGAAGTGACGTGAGCGAG 60.445 63.158 0.00 0.00 42.00 5.03
1202 1900 0.586802 GTTTGGGAAGTGACGTGAGC 59.413 55.000 0.00 0.00 0.00 4.26
1204 1902 0.460722 TCGTTTGGGAAGTGACGTGA 59.539 50.000 0.00 0.00 36.89 4.35
1206 1904 1.292992 GTTCGTTTGGGAAGTGACGT 58.707 50.000 0.00 0.00 36.89 4.34
1238 1940 3.849953 GTTCGGTTAGCGCGGCTG 61.850 66.667 8.83 1.15 40.10 4.85
1241 1943 4.781959 TCGGTTCGGTTAGCGCGG 62.782 66.667 8.83 0.00 38.78 6.46
1242 1944 3.245315 CTCGGTTCGGTTAGCGCG 61.245 66.667 0.00 0.00 38.78 6.86
1243 1945 3.551915 GCTCGGTTCGGTTAGCGC 61.552 66.667 0.00 0.00 38.78 5.92
1411 2132 2.107950 AAAATCGTCAGGAATCGGCA 57.892 45.000 0.00 0.00 0.00 5.69
1414 2135 3.063997 CAGGGAAAAATCGTCAGGAATCG 59.936 47.826 0.00 0.00 0.00 3.34
1415 2136 3.181496 GCAGGGAAAAATCGTCAGGAATC 60.181 47.826 0.00 0.00 0.00 2.52
1416 2137 2.755103 GCAGGGAAAAATCGTCAGGAAT 59.245 45.455 0.00 0.00 0.00 3.01
1516 2246 1.327764 GGAAAATGACGAGCGGATCAC 59.672 52.381 0.00 0.00 0.00 3.06
1517 2247 1.651987 GGAAAATGACGAGCGGATCA 58.348 50.000 0.00 0.00 0.00 2.92
1522 2252 1.644786 GGGTGGGAAAATGACGAGCG 61.645 60.000 0.00 0.00 0.00 5.03
1523 2253 1.313091 GGGGTGGGAAAATGACGAGC 61.313 60.000 0.00 0.00 0.00 5.03
1525 2255 1.003112 CGGGGTGGGAAAATGACGA 60.003 57.895 0.00 0.00 0.00 4.20
1527 2257 2.203470 TAACGGGGTGGGAAAATGAC 57.797 50.000 0.00 0.00 0.00 3.06
1528 2258 2.973983 TTAACGGGGTGGGAAAATGA 57.026 45.000 0.00 0.00 0.00 2.57
1530 2260 4.224762 TCTTTTTAACGGGGTGGGAAAAT 58.775 39.130 0.00 0.00 0.00 1.82
1531 2261 3.639952 TCTTTTTAACGGGGTGGGAAAA 58.360 40.909 0.00 0.00 0.00 2.29
1532 2262 3.309600 TCTTTTTAACGGGGTGGGAAA 57.690 42.857 0.00 0.00 0.00 3.13
1533 2263 3.309600 TTCTTTTTAACGGGGTGGGAA 57.690 42.857 0.00 0.00 0.00 3.97
1534 2264 3.529216 ATTCTTTTTAACGGGGTGGGA 57.471 42.857 0.00 0.00 0.00 4.37
1536 2266 4.523558 TGGTAATTCTTTTTAACGGGGTGG 59.476 41.667 0.00 0.00 0.00 4.61
1538 2268 5.139001 TGTGGTAATTCTTTTTAACGGGGT 58.861 37.500 0.00 0.00 0.00 4.95
1539 2269 5.474189 TCTGTGGTAATTCTTTTTAACGGGG 59.526 40.000 0.00 0.00 0.00 5.73
1541 2271 7.172703 ACTCTCTGTGGTAATTCTTTTTAACGG 59.827 37.037 0.00 0.00 0.00 4.44
1549 2293 7.599245 CGAGTAAAACTCTCTGTGGTAATTCTT 59.401 37.037 5.59 0.00 42.92 2.52
1556 2300 2.288886 GCCGAGTAAAACTCTCTGTGGT 60.289 50.000 5.59 0.00 42.92 4.16
1557 2301 2.338500 GCCGAGTAAAACTCTCTGTGG 58.662 52.381 5.59 0.59 42.92 4.17
1560 2304 1.630148 CGGCCGAGTAAAACTCTCTG 58.370 55.000 24.07 0.00 42.92 3.35
1566 2310 0.391528 TTAGCCCGGCCGAGTAAAAC 60.392 55.000 30.73 7.30 0.00 2.43
1569 2313 2.724273 GGTTAGCCCGGCCGAGTAA 61.724 63.158 30.73 17.63 0.00 2.24
1570 2314 3.149648 GGTTAGCCCGGCCGAGTA 61.150 66.667 30.73 12.08 0.00 2.59
1572 2316 4.090588 TTGGTTAGCCCGGCCGAG 62.091 66.667 30.73 16.89 35.15 4.63
1573 2317 4.397832 GTTGGTTAGCCCGGCCGA 62.398 66.667 30.73 2.40 35.15 5.54
1575 2319 4.710167 ACGTTGGTTAGCCCGGCC 62.710 66.667 5.55 0.00 35.15 6.13
1590 2334 1.796355 ATCAGCAACGACGACGACG 60.796 57.895 17.60 17.60 42.66 5.12
1591 2335 0.728129 TCATCAGCAACGACGACGAC 60.728 55.000 15.32 3.02 42.66 4.34
1592 2336 0.454452 CTCATCAGCAACGACGACGA 60.454 55.000 15.32 0.00 42.66 4.20
1593 2337 1.983907 CTCATCAGCAACGACGACG 59.016 57.895 5.58 5.58 45.75 5.12
1594 2338 1.704582 GCTCATCAGCAACGACGAC 59.295 57.895 0.00 0.00 46.06 4.34
1595 2339 4.169102 GCTCATCAGCAACGACGA 57.831 55.556 0.00 0.00 46.06 4.20
1604 2348 0.602106 CATACGCCCCTGCTCATCAG 60.602 60.000 0.00 0.00 42.49 2.90
1605 2349 1.048160 TCATACGCCCCTGCTCATCA 61.048 55.000 0.00 0.00 34.43 3.07
1606 2350 0.601311 GTCATACGCCCCTGCTCATC 60.601 60.000 0.00 0.00 34.43 2.92
1607 2351 1.447643 GTCATACGCCCCTGCTCAT 59.552 57.895 0.00 0.00 34.43 2.90
1608 2352 2.900273 GTCATACGCCCCTGCTCA 59.100 61.111 0.00 0.00 34.43 4.26
1609 2353 2.279517 CGTCATACGCCCCTGCTC 60.280 66.667 0.00 0.00 33.65 4.26
1610 2354 2.758327 TCGTCATACGCCCCTGCT 60.758 61.111 0.00 0.00 42.21 4.24
1679 2423 1.745489 GTTGAGGATGGTGTCGGGC 60.745 63.158 0.00 0.00 0.00 6.13
1709 2453 1.148027 GGGTAGGGTAGGGTAGGGTAC 59.852 61.905 0.00 0.00 0.00 3.34
1730 2474 2.831742 TACAGTAGAGGCCGGGCG 60.832 66.667 23.81 9.72 0.00 6.13
1731 2475 2.794028 GGTACAGTAGAGGCCGGGC 61.794 68.421 22.67 22.67 0.00 6.13
1732 2476 2.487532 CGGTACAGTAGAGGCCGGG 61.488 68.421 2.18 0.00 38.86 5.73
1733 2477 3.117372 CGGTACAGTAGAGGCCGG 58.883 66.667 0.00 0.00 38.86 6.13
1734 2478 2.412112 GCGGTACAGTAGAGGCCG 59.588 66.667 0.00 3.49 44.60 6.13
1735 2479 1.141234 GTGCGGTACAGTAGAGGCC 59.859 63.158 0.00 0.00 0.00 5.19
1736 2480 1.226603 CGTGCGGTACAGTAGAGGC 60.227 63.158 0.00 0.00 0.00 4.70
1737 2481 1.022735 ATCGTGCGGTACAGTAGAGG 58.977 55.000 0.00 0.00 0.00 3.69
1738 2482 4.485024 AATATCGTGCGGTACAGTAGAG 57.515 45.455 0.00 0.00 0.00 2.43
1739 2483 4.906065 AAATATCGTGCGGTACAGTAGA 57.094 40.909 0.00 0.00 0.00 2.59
1740 2484 5.755813 AGTAAATATCGTGCGGTACAGTAG 58.244 41.667 0.00 0.00 0.00 2.57
1828 2572 6.392354 TGAAAAGAGCCTCAAATATTGCAAG 58.608 36.000 4.94 0.00 0.00 4.01
1832 2576 9.649167 AGAAAATGAAAAGAGCCTCAAATATTG 57.351 29.630 0.00 0.00 0.00 1.90
1835 2579 9.696917 GAAAGAAAATGAAAAGAGCCTCAAATA 57.303 29.630 0.00 0.00 0.00 1.40
1871 2909 1.094073 CCGACAGTACCGAGGACGAT 61.094 60.000 0.00 0.00 42.66 3.73
1876 2914 1.214589 CCAACCGACAGTACCGAGG 59.785 63.158 0.00 0.00 0.00 4.63
1907 2945 0.658897 GGTAGAACTCGAGCTCGGAG 59.341 60.000 33.98 28.46 40.29 4.63
1910 2948 1.297745 GCGGTAGAACTCGAGCTCG 60.298 63.158 30.03 30.03 41.45 5.03
1911 2949 1.064458 GGCGGTAGAACTCGAGCTC 59.936 63.158 13.61 10.48 0.00 4.09
1913 2951 2.278013 CGGCGGTAGAACTCGAGC 60.278 66.667 13.61 0.00 0.00 5.03
1914 2952 1.062206 GTCGGCGGTAGAACTCGAG 59.938 63.158 11.84 11.84 0.00 4.04
1915 2953 1.236616 TTGTCGGCGGTAGAACTCGA 61.237 55.000 7.21 0.00 0.00 4.04
1918 2956 0.963962 TCTTTGTCGGCGGTAGAACT 59.036 50.000 7.21 0.00 0.00 3.01
1920 2958 2.137523 GTTTCTTTGTCGGCGGTAGAA 58.862 47.619 7.21 8.31 0.00 2.10
1926 2964 2.093972 TTTTCGTTTCTTTGTCGGCG 57.906 45.000 0.00 0.00 0.00 6.46
1935 2973 4.226761 GCCGACAATTGATTTTCGTTTCT 58.773 39.130 13.59 0.00 0.00 2.52
1958 2996 2.006772 CGCTCTACAACGAATGGCC 58.993 57.895 0.00 0.00 0.00 5.36
1960 2998 0.800683 TCGCGCTCTACAACGAATGG 60.801 55.000 5.56 0.00 0.00 3.16
1966 3004 0.297820 CCGAATTCGCGCTCTACAAC 59.702 55.000 22.36 0.00 38.18 3.32
1968 3006 0.800683 CACCGAATTCGCGCTCTACA 60.801 55.000 22.36 0.00 38.18 2.74
1970 3008 1.876714 GCACCGAATTCGCGCTCTA 60.877 57.895 24.71 0.00 38.18 2.43
1973 3013 1.878522 CTAGCACCGAATTCGCGCT 60.879 57.895 32.02 32.02 44.66 5.92
1977 3017 1.841450 GGTCTCTAGCACCGAATTCG 58.159 55.000 20.92 20.92 39.44 3.34
1985 3025 0.737715 CAAGCACCGGTCTCTAGCAC 60.738 60.000 15.40 0.00 0.00 4.40
1991 3031 1.021968 AAAACACAAGCACCGGTCTC 58.978 50.000 2.59 0.00 0.00 3.36
1993 3033 0.248866 CCAAAACACAAGCACCGGTC 60.249 55.000 2.59 0.00 0.00 4.79
1997 3037 1.748493 TCTGTCCAAAACACAAGCACC 59.252 47.619 0.00 0.00 33.24 5.01
2001 3041 4.026640 CGCAAAATCTGTCCAAAACACAAG 60.027 41.667 0.00 0.00 33.24 3.16
2004 3044 3.701241 TCGCAAAATCTGTCCAAAACAC 58.299 40.909 0.00 0.00 33.24 3.32
2011 3051 5.699839 ACAATAAACTCGCAAAATCTGTCC 58.300 37.500 0.00 0.00 0.00 4.02
2022 3066 7.962918 ACAGTGATAATTGAACAATAAACTCGC 59.037 33.333 0.00 3.38 0.00 5.03
2057 3101 5.585047 AGTGTATATTTCCAAAGACGAAGCC 59.415 40.000 0.00 0.00 0.00 4.35
2102 3169 9.729281 AAAAGGATTCATTTGTGCAGAAAATAT 57.271 25.926 13.53 6.96 0.00 1.28
2103 3170 9.206870 GAAAAGGATTCATTTGTGCAGAAAATA 57.793 29.630 13.53 1.57 0.00 1.40
2104 3171 7.935210 AGAAAAGGATTCATTTGTGCAGAAAAT 59.065 29.630 13.53 7.26 0.00 1.82
2105 3172 7.274447 AGAAAAGGATTCATTTGTGCAGAAAA 58.726 30.769 13.53 5.02 0.00 2.29
2117 3317 9.082313 ACAACAACAGATTAGAAAAGGATTCAT 57.918 29.630 0.00 0.00 0.00 2.57
2123 3323 7.707104 AGAACACAACAACAGATTAGAAAAGG 58.293 34.615 0.00 0.00 0.00 3.11
2124 3324 8.397906 TGAGAACACAACAACAGATTAGAAAAG 58.602 33.333 0.00 0.00 0.00 2.27
2129 3329 8.961092 CAAATTGAGAACACAACAACAGATTAG 58.039 33.333 0.00 0.00 32.50 1.73
2134 3334 6.949578 AACAAATTGAGAACACAACAACAG 57.050 33.333 0.00 0.00 32.50 3.16
2145 3353 4.098349 AGACAGCTGCAAACAAATTGAGAA 59.902 37.500 15.27 0.00 41.85 2.87
2149 3357 7.374228 CGTATATAGACAGCTGCAAACAAATTG 59.626 37.037 15.27 0.00 42.21 2.32
2180 3388 4.141274 TGTCCCTCCATTTCTTTCAACTCA 60.141 41.667 0.00 0.00 0.00 3.41
2263 3471 5.105513 GGGGGAGCGATATTCAAAAGAAAAA 60.106 40.000 0.00 0.00 0.00 1.94
2264 3472 4.401202 GGGGGAGCGATATTCAAAAGAAAA 59.599 41.667 0.00 0.00 0.00 2.29
2265 3473 3.951680 GGGGGAGCGATATTCAAAAGAAA 59.048 43.478 0.00 0.00 0.00 2.52
2268 3476 3.214696 AGGGGGAGCGATATTCAAAAG 57.785 47.619 0.00 0.00 0.00 2.27
2271 3479 2.104792 CTGAAGGGGGAGCGATATTCAA 59.895 50.000 0.00 0.00 0.00 2.69
2277 3485 0.253327 GAAACTGAAGGGGGAGCGAT 59.747 55.000 0.00 0.00 0.00 4.58
2278 3486 0.836400 AGAAACTGAAGGGGGAGCGA 60.836 55.000 0.00 0.00 0.00 4.93
2397 3704 1.580845 CCGCTGCTTTTCCTGTGAGG 61.581 60.000 0.00 0.00 36.46 3.86
2398 3705 1.580845 CCCGCTGCTTTTCCTGTGAG 61.581 60.000 0.00 0.00 0.00 3.51
2414 3721 2.995574 ACCCCTCGTGAGAACCCG 60.996 66.667 0.00 0.00 41.32 5.28
2470 3777 6.825721 ACAATGGAGAAATCTGGTTAGATGTC 59.174 38.462 0.00 0.00 44.72 3.06
2476 3783 4.224147 TCGGACAATGGAGAAATCTGGTTA 59.776 41.667 0.00 0.00 0.00 2.85
2480 3787 3.062639 CGTTCGGACAATGGAGAAATCTG 59.937 47.826 0.00 0.00 0.00 2.90
2492 3799 3.252944 GGTTTAAAATCCCGTTCGGACAA 59.747 43.478 13.08 0.00 46.09 3.18
2577 3888 3.426159 CCGTTGTGATGATGCCTGTAAAC 60.426 47.826 0.00 0.00 0.00 2.01
2621 3935 1.654137 CTTGTTGCCGAACACACGC 60.654 57.895 0.00 0.00 41.92 5.34
2671 3985 9.720769 TGGAAGAGAGTTAATTTTACAAGGTAG 57.279 33.333 0.00 0.00 0.00 3.18
2678 3993 9.140286 GGCATTTTGGAAGAGAGTTAATTTTAC 57.860 33.333 0.00 0.00 0.00 2.01
2680 3995 7.734942 TGGCATTTTGGAAGAGAGTTAATTTT 58.265 30.769 0.00 0.00 0.00 1.82
2690 4005 4.015084 AGAGACATGGCATTTTGGAAGAG 58.985 43.478 0.00 0.00 0.00 2.85
2691 4006 4.038271 AGAGACATGGCATTTTGGAAGA 57.962 40.909 0.00 0.00 0.00 2.87
2698 4013 5.726980 TTTGCTAAAGAGACATGGCATTT 57.273 34.783 0.00 3.99 0.00 2.32
2702 4017 3.255642 TGGTTTTGCTAAAGAGACATGGC 59.744 43.478 0.00 0.00 0.00 4.40
2703 4018 4.278170 TGTGGTTTTGCTAAAGAGACATGG 59.722 41.667 0.00 0.00 0.00 3.66
2718 4033 6.472686 TGGCTACTTGTATTTTGTGGTTTT 57.527 33.333 0.00 0.00 0.00 2.43
2743 4058 3.869272 GAGGCCGTTGCGATGCTG 61.869 66.667 0.00 0.00 38.85 4.41
2815 4130 3.872182 TCGCACTCTCACTCACTATCTAC 59.128 47.826 0.00 0.00 0.00 2.59
2828 4150 2.095008 TCATGAACAGTCTCGCACTCTC 60.095 50.000 0.00 0.00 30.26 3.20
2829 4151 1.889170 TCATGAACAGTCTCGCACTCT 59.111 47.619 0.00 0.00 30.26 3.24
2830 4152 2.354109 TCATGAACAGTCTCGCACTC 57.646 50.000 0.00 0.00 30.26 3.51
2831 4153 2.820059 TTCATGAACAGTCTCGCACT 57.180 45.000 3.38 0.00 34.67 4.40
2832 4154 2.158449 CCTTTCATGAACAGTCTCGCAC 59.842 50.000 7.89 0.00 0.00 5.34
2833 4155 2.416747 CCTTTCATGAACAGTCTCGCA 58.583 47.619 7.89 0.00 0.00 5.10
2834 4156 1.129437 GCCTTTCATGAACAGTCTCGC 59.871 52.381 7.89 4.68 0.00 5.03
2835 4157 1.734465 GGCCTTTCATGAACAGTCTCG 59.266 52.381 7.89 0.00 0.00 4.04
2853 4175 3.117046 GCTAGTACGACTCAGATTTGGC 58.883 50.000 0.00 0.00 0.00 4.52
2879 4201 4.814294 GGAGTGTAGGCCGCGGTG 62.814 72.222 28.70 1.63 0.00 4.94
2885 4207 1.342175 ACTGGTCTAGGAGTGTAGGCC 60.342 57.143 0.00 0.00 44.07 5.19
2920 4249 2.981560 CTTCACCGTGTGCCCATGC 61.982 63.158 0.00 0.00 32.98 4.06
2937 4266 2.040278 TGGTCAAGCTTGTGCCTAATCT 59.960 45.455 28.90 0.00 40.80 2.40
2977 4314 0.980754 TGCTTAATGAGGCCCCTCGA 60.981 55.000 0.00 0.21 45.48 4.04
2979 4316 0.255890 TGTGCTTAATGAGGCCCCTC 59.744 55.000 7.39 7.39 43.01 4.30
2982 4319 0.457443 GCTTGTGCTTAATGAGGCCC 59.543 55.000 0.00 0.00 36.03 5.80
3019 4356 3.369052 CCACAGAGGGCACGAATTAGTTA 60.369 47.826 0.00 0.00 0.00 2.24
3062 4399 3.999663 GCCTAATCATAGCACACCTGATC 59.000 47.826 0.00 0.00 0.00 2.92
3072 4409 6.260936 ACATATAATTGCGGCCTAATCATAGC 59.739 38.462 0.00 0.00 0.00 2.97
3076 4413 5.182950 CCAACATATAATTGCGGCCTAATCA 59.817 40.000 0.00 0.00 0.00 2.57
3097 4434 3.149005 GGGAACAGTGAATGTACCCAA 57.851 47.619 0.00 0.00 43.00 4.12
3106 4443 1.774254 ACTGTGATGGGGAACAGTGAA 59.226 47.619 7.60 0.00 41.29 3.18
3127 4464 1.775385 TCGCCATCACAGAGGATGTA 58.225 50.000 0.00 0.00 41.41 2.29
3128 4465 1.126488 ATCGCCATCACAGAGGATGT 58.874 50.000 0.00 0.00 45.43 3.06
3129 4466 1.509703 CATCGCCATCACAGAGGATG 58.490 55.000 0.00 0.00 43.40 3.51
3130 4467 0.250209 GCATCGCCATCACAGAGGAT 60.250 55.000 0.00 0.00 0.00 3.24
3131 4468 1.144716 GCATCGCCATCACAGAGGA 59.855 57.895 0.00 0.00 0.00 3.71
3132 4469 0.745486 TTGCATCGCCATCACAGAGG 60.745 55.000 0.00 0.00 0.00 3.69
3133 4470 1.089112 TTTGCATCGCCATCACAGAG 58.911 50.000 0.00 0.00 0.00 3.35
3134 4471 0.804364 GTTTGCATCGCCATCACAGA 59.196 50.000 0.00 0.00 0.00 3.41
3135 4472 0.179156 GGTTTGCATCGCCATCACAG 60.179 55.000 0.00 0.00 0.00 3.66
3136 4473 1.882311 GGTTTGCATCGCCATCACA 59.118 52.632 0.00 0.00 0.00 3.58
3137 4474 1.226379 CGGTTTGCATCGCCATCAC 60.226 57.895 0.00 0.00 0.00 3.06
3138 4475 3.050166 GCGGTTTGCATCGCCATCA 62.050 57.895 15.61 0.00 45.42 3.07
3139 4476 2.278142 GCGGTTTGCATCGCCATC 60.278 61.111 15.61 0.00 45.42 3.51
3148 4485 3.028366 GCCTCTTCGAGCGGTTTGC 62.028 63.158 0.00 0.00 46.98 3.68
3149 4486 1.374758 AGCCTCTTCGAGCGGTTTG 60.375 57.895 0.00 0.00 0.00 2.93
3150 4487 1.374758 CAGCCTCTTCGAGCGGTTT 60.375 57.895 0.00 0.00 0.00 3.27
3151 4488 2.262915 CAGCCTCTTCGAGCGGTT 59.737 61.111 0.00 0.00 0.00 4.44
3152 4489 4.443266 GCAGCCTCTTCGAGCGGT 62.443 66.667 0.00 0.00 0.00 5.68
3156 4493 3.764466 ACCGGCAGCCTCTTCGAG 61.764 66.667 10.54 0.00 0.00 4.04
3157 4494 4.069232 CACCGGCAGCCTCTTCGA 62.069 66.667 10.54 0.00 0.00 3.71
3175 4512 3.883744 AACACGCCTCGGCTCCTTG 62.884 63.158 6.35 0.91 39.32 3.61
3176 4513 3.591254 GAACACGCCTCGGCTCCTT 62.591 63.158 6.35 0.00 39.32 3.36
3177 4514 4.070552 GAACACGCCTCGGCTCCT 62.071 66.667 6.35 0.00 39.32 3.69
3196 4533 1.593196 AACTTGTGCGCTGCTAAGAA 58.407 45.000 9.73 0.00 31.64 2.52
3270 4607 7.592903 GGTTGTTCTTCTTTCAAAGATCACATC 59.407 37.037 0.00 4.10 35.66 3.06
3281 4618 7.724506 TCTCTAGTCTAGGTTGTTCTTCTTTCA 59.275 37.037 7.05 0.00 0.00 2.69
3293 4630 4.772624 TGCATGTGTTCTCTAGTCTAGGTT 59.227 41.667 7.05 0.00 0.00 3.50
3296 4633 5.316327 TGTGCATGTGTTCTCTAGTCTAG 57.684 43.478 0.00 0.00 0.00 2.43
3297 4634 5.722021 TTGTGCATGTGTTCTCTAGTCTA 57.278 39.130 0.00 0.00 0.00 2.59
3298 4635 4.607293 TTGTGCATGTGTTCTCTAGTCT 57.393 40.909 0.00 0.00 0.00 3.24
3299 4636 5.673337 TTTTGTGCATGTGTTCTCTAGTC 57.327 39.130 0.00 0.00 0.00 2.59
3300 4637 7.928307 ATATTTTGTGCATGTGTTCTCTAGT 57.072 32.000 0.00 0.00 0.00 2.57
3325 4665 9.660180 GGTAGAACATTTCTAACTCAGAAGAAT 57.340 33.333 4.09 0.00 44.68 2.40
3352 4692 6.691508 ACGTCTTATAAAAAGTTACGGAGGT 58.308 36.000 0.00 0.00 33.44 3.85
3380 4720 4.391405 TCACAGTACGATACCGACTCTA 57.609 45.455 0.00 0.00 39.50 2.43
3387 4727 2.912967 CACGTGTTCACAGTACGATACC 59.087 50.000 7.58 0.00 40.01 2.73
3393 4733 0.501435 GCGACACGTGTTCACAGTAC 59.499 55.000 24.26 6.15 0.00 2.73
3395 4735 0.870307 GAGCGACACGTGTTCACAGT 60.870 55.000 24.26 4.65 0.00 3.55
3398 4738 0.658244 TACGAGCGACACGTGTTCAC 60.658 55.000 24.26 14.94 43.73 3.18
3410 4750 2.998279 AACCCCGGAACTACGAGCG 61.998 63.158 0.73 0.00 35.47 5.03
3412 4752 1.133790 CTACAACCCCGGAACTACGAG 59.866 57.143 0.73 0.00 35.47 4.18
3413 4753 1.176527 CTACAACCCCGGAACTACGA 58.823 55.000 0.73 0.00 35.47 3.43
3414 4754 0.174162 CCTACAACCCCGGAACTACG 59.826 60.000 0.73 0.00 0.00 3.51
3419 4759 2.751688 GCACCTACAACCCCGGAA 59.248 61.111 0.73 0.00 0.00 4.30
3421 4761 3.945304 GACGCACCTACAACCCCGG 62.945 68.421 0.00 0.00 0.00 5.73
3504 4844 4.503314 GCCATTGCTTGCTCGGCC 62.503 66.667 0.00 0.00 36.73 6.13
3507 4847 1.428219 CTCTGCCATTGCTTGCTCG 59.572 57.895 0.00 0.00 38.71 5.03
3547 4888 3.889520 ACTAACCGGAATTGGAGACTC 57.110 47.619 9.46 0.00 0.00 3.36
3615 4956 2.895404 ACCGCTGGAAGTTGAAGTAGTA 59.105 45.455 1.50 0.00 35.30 1.82
3616 4957 1.692519 ACCGCTGGAAGTTGAAGTAGT 59.307 47.619 1.50 0.00 35.30 2.73
3617 4958 2.338500 GACCGCTGGAAGTTGAAGTAG 58.662 52.381 1.50 0.00 35.30 2.57
3643 4984 0.747644 TGTGGTGTGAACAGTGCTGG 60.748 55.000 4.11 0.00 34.19 4.85
3681 5023 1.137086 ACCATCATCGTCACTAGCCAC 59.863 52.381 0.00 0.00 0.00 5.01
3699 5053 1.953138 CGCTGATGCTCCGATCACC 60.953 63.158 0.00 0.00 36.97 4.02
3716 5070 3.940640 CAATCCCGCGGTGCATCG 61.941 66.667 26.12 16.79 0.00 3.84
3727 5081 7.094631 GTGATTTTAAACAACCCTACAATCCC 58.905 38.462 0.00 0.00 0.00 3.85
3800 5154 8.948853 TTCTGCTAACAAAAATTGTAGAATCG 57.051 30.769 0.00 0.00 44.59 3.34
3808 5162 8.751335 ACACGTAAATTCTGCTAACAAAAATTG 58.249 29.630 0.00 0.00 0.00 2.32
3815 5169 8.815141 TTAACTACACGTAAATTCTGCTAACA 57.185 30.769 0.00 0.00 0.00 2.41
3833 5190 6.019152 TCGCAAATCGCAAAATCTTAACTAC 58.981 36.000 0.00 0.00 42.60 2.73
3845 5224 0.662619 GATGGGATCGCAAATCGCAA 59.337 50.000 17.16 4.62 42.78 4.85
3847 5226 1.205064 CGATGGGATCGCAAATCGC 59.795 57.895 17.16 6.27 46.55 4.58
3861 5240 0.108615 AGGTCAAAGCTCCGACGATG 60.109 55.000 0.00 0.00 32.74 3.84
3865 5244 0.318762 AGTCAGGTCAAAGCTCCGAC 59.681 55.000 6.88 6.88 0.00 4.79
3867 5246 0.318441 TGAGTCAGGTCAAAGCTCCG 59.682 55.000 0.00 0.00 0.00 4.63
3875 5254 0.249868 CGTGGCTTTGAGTCAGGTCA 60.250 55.000 0.00 0.00 31.68 4.02
3878 5257 1.466167 CAATCGTGGCTTTGAGTCAGG 59.534 52.381 0.00 0.00 37.08 3.86
3880 5259 1.872952 CACAATCGTGGCTTTGAGTCA 59.127 47.619 0.00 0.00 39.64 3.41
3964 5372 1.880601 GCGCACATCATCCGACGATC 61.881 60.000 0.30 0.00 0.00 3.69
4005 5413 2.870341 CGCCATGTCGTACGCCATG 61.870 63.158 27.52 27.52 38.51 3.66
4419 5827 2.813908 GGCGTGGACATGGACGAC 60.814 66.667 15.74 10.52 37.81 4.34
4596 6004 2.266554 GATCACAAGTCCAGCTCGAAG 58.733 52.381 0.00 0.00 0.00 3.79
4626 6034 2.558554 ATCAGTCTGGCCACGTACGC 62.559 60.000 16.72 0.00 0.00 4.42
4627 6035 0.802222 CATCAGTCTGGCCACGTACG 60.802 60.000 15.01 15.01 0.00 3.67
4628 6036 0.530744 TCATCAGTCTGGCCACGTAC 59.469 55.000 0.00 0.00 0.00 3.67
4629 6037 1.136891 CATCATCAGTCTGGCCACGTA 59.863 52.381 0.00 0.00 0.00 3.57
4630 6038 0.107993 CATCATCAGTCTGGCCACGT 60.108 55.000 0.00 0.00 0.00 4.49
4631 6039 1.434622 GCATCATCAGTCTGGCCACG 61.435 60.000 0.00 0.00 0.00 4.94
4633 6041 1.153309 CGCATCATCAGTCTGGCCA 60.153 57.895 4.71 4.71 0.00 5.36
4634 6042 2.541120 GCGCATCATCAGTCTGGCC 61.541 63.158 0.30 0.00 0.00 5.36
4635 6043 2.879070 CGCGCATCATCAGTCTGGC 61.879 63.158 8.75 0.00 0.00 4.85
4637 6045 2.624811 GCGCGCATCATCAGTCTG 59.375 61.111 29.10 0.00 0.00 3.51
4638 6046 2.587194 GGCGCGCATCATCAGTCT 60.587 61.111 34.42 0.00 0.00 3.24
4640 6048 1.820906 AATGGCGCGCATCATCAGT 60.821 52.632 34.42 17.55 0.00 3.41
4642 6050 1.167781 ATCAATGGCGCGCATCATCA 61.168 50.000 34.42 21.46 0.00 3.07
4709 6119 1.003355 TCTGCCCTTTGCTTCTCCG 60.003 57.895 0.00 0.00 42.00 4.63
4717 6127 3.084039 TGTTATCTTGCTCTGCCCTTTG 58.916 45.455 0.00 0.00 0.00 2.77
4720 6130 1.211457 CCTGTTATCTTGCTCTGCCCT 59.789 52.381 0.00 0.00 0.00 5.19
4722 6132 1.210478 TCCCTGTTATCTTGCTCTGCC 59.790 52.381 0.00 0.00 0.00 4.85
4723 6133 2.698855 TCCCTGTTATCTTGCTCTGC 57.301 50.000 0.00 0.00 0.00 4.26
4740 6152 1.165270 AGCTGCACCGTAACAATTCC 58.835 50.000 1.02 0.00 0.00 3.01
4924 6336 6.649557 TGGAAGAATCTTCCGTAAAGAAAGAC 59.350 38.462 30.23 8.39 46.85 3.01
4930 6346 7.377766 TGAAATGGAAGAATCTTCCGTAAAG 57.622 36.000 30.59 0.00 41.43 1.85
5043 6460 8.669946 TTCCGCACTACATATATTTGATTTGA 57.330 30.769 0.00 0.00 0.00 2.69
5044 6461 9.897744 ATTTCCGCACTACATATATTTGATTTG 57.102 29.630 0.00 0.00 0.00 2.32
5048 6465 9.719355 ACATATTTCCGCACTACATATATTTGA 57.281 29.630 0.00 0.00 0.00 2.69
5080 6497 7.708998 TGGTAGTAACTTTTAGTTTTGCCAAG 58.291 34.615 9.45 0.00 39.51 3.61
5100 6517 8.768955 GCTCATGAAGTATGTCTATTTTGGTAG 58.231 37.037 0.00 0.00 38.01 3.18
5125 6542 1.518774 CCTGTGATTGCATTGGGGC 59.481 57.895 0.00 0.00 0.00 5.80
5131 6548 1.374343 CTGCTCGCCTGTGATTGCAT 61.374 55.000 0.00 0.00 0.00 3.96
5132 6549 2.032376 TGCTCGCCTGTGATTGCA 59.968 55.556 0.00 0.00 0.00 4.08
5133 6550 2.758089 CCTGCTCGCCTGTGATTGC 61.758 63.158 0.00 0.00 0.00 3.56
5150 6642 0.600782 TCCGTCCGCAACTTGTTACC 60.601 55.000 0.00 0.00 0.00 2.85
5154 6646 2.030562 CCTCCGTCCGCAACTTGT 59.969 61.111 0.00 0.00 0.00 3.16
5155 6647 2.742372 CCCTCCGTCCGCAACTTG 60.742 66.667 0.00 0.00 0.00 3.16
5156 6648 3.236003 GACCCTCCGTCCGCAACTT 62.236 63.158 0.00 0.00 35.23 2.66
5157 6649 3.692406 GACCCTCCGTCCGCAACT 61.692 66.667 0.00 0.00 35.23 3.16
5177 6680 2.323447 TCGACATACGAGCGAGCG 59.677 61.111 0.00 0.00 46.45 5.03
5190 6693 0.029035 ATGCCGATACGACAGTCGAC 59.971 55.000 29.53 17.26 43.74 4.20
5193 6696 1.200483 CACATGCCGATACGACAGTC 58.800 55.000 0.00 0.00 0.00 3.51
5194 6697 0.806102 GCACATGCCGATACGACAGT 60.806 55.000 0.00 0.00 34.31 3.55
5195 6698 1.811217 CGCACATGCCGATACGACAG 61.811 60.000 0.00 0.00 37.91 3.51
5196 6699 1.876263 CGCACATGCCGATACGACA 60.876 57.895 0.00 0.00 37.91 4.35
5197 6700 2.585869 CCGCACATGCCGATACGAC 61.586 63.158 7.82 0.00 37.91 4.34
5198 6701 2.279186 CCGCACATGCCGATACGA 60.279 61.111 7.82 0.00 37.91 3.43
5199 6702 3.337889 CCCGCACATGCCGATACG 61.338 66.667 7.82 0.00 37.91 3.06
5200 6703 2.972505 CCCCGCACATGCCGATAC 60.973 66.667 7.82 0.00 37.91 2.24
5201 6704 4.927782 GCCCCGCACATGCCGATA 62.928 66.667 7.82 0.00 37.91 2.92
5214 6717 0.536006 GACAGAGCCATACATGCCCC 60.536 60.000 0.00 0.00 0.00 5.80
5256 6759 1.971167 TTCCACAGCGGGCACATTC 60.971 57.895 0.00 0.00 34.36 2.67
5331 6839 4.038080 GTTTTCCCTGCCGTGCCG 62.038 66.667 0.00 0.00 0.00 5.69
5390 6898 3.048602 CCGTACGCCAGGATAGGG 58.951 66.667 10.49 0.00 0.00 3.53
5479 6998 0.658897 GACCAAGGACGAAAACGCAA 59.341 50.000 0.00 0.00 0.00 4.85
5505 7024 2.034687 TTCCCAGCAGCCAAGAGC 59.965 61.111 0.00 0.00 44.25 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.