Multiple sequence alignment - TraesCS5A01G221400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G221400 chr5A 100.000 2885 0 0 1 2885 437400960 437398076 0.000000e+00 5328.0
1 TraesCS5A01G221400 chr5A 90.071 1128 56 25 815 1924 437412846 437411757 0.000000e+00 1411.0
2 TraesCS5A01G221400 chr5A 87.451 1267 102 32 690 1928 437393461 437392224 0.000000e+00 1406.0
3 TraesCS5A01G221400 chr5A 82.278 237 22 12 293 521 437393809 437393585 1.360000e-43 187.0
4 TraesCS5A01G221400 chr5D 91.315 2533 94 47 293 2779 336337963 336340415 0.000000e+00 3343.0
5 TraesCS5A01G221400 chr5D 90.453 1613 85 33 293 1884 336240443 336238879 0.000000e+00 2061.0
6 TraesCS5A01G221400 chr5D 87.167 1278 97 31 690 1928 336314653 336315902 0.000000e+00 1389.0
7 TraesCS5A01G221400 chr5D 91.176 1020 54 12 917 1928 336381387 336380396 0.000000e+00 1352.0
8 TraesCS5A01G221400 chr5D 97.128 383 11 0 2301 2683 336262553 336262171 0.000000e+00 647.0
9 TraesCS5A01G221400 chr5D 90.503 358 20 6 1583 1928 336257245 336256890 7.280000e-126 460.0
10 TraesCS5A01G221400 chr5D 79.554 538 57 27 690 1200 336258155 336257644 4.610000e-88 335.0
11 TraesCS5A01G221400 chr5D 96.988 166 4 1 2719 2884 336262173 336262009 7.870000e-71 278.0
12 TraesCS5A01G221400 chr5D 76.326 528 50 43 293 801 336382011 336381540 2.250000e-51 213.0
13 TraesCS5A01G221400 chr5D 81.092 238 23 17 293 521 336258503 336258279 1.370000e-38 171.0
14 TraesCS5A01G221400 chr5D 81.277 235 22 17 293 518 336314305 336314526 1.370000e-38 171.0
15 TraesCS5A01G221400 chr5D 97.333 75 2 0 2032 2106 336262623 336262549 8.390000e-26 128.0
16 TraesCS5A01G221400 chr5D 79.365 189 27 10 2422 2608 336382691 336382513 3.900000e-24 122.0
17 TraesCS5A01G221400 chr5D 91.379 58 5 0 2617 2674 553402525 553402468 2.380000e-11 80.5
18 TraesCS5A01G221400 chr5B 88.302 1684 111 45 296 1928 394581750 394580102 0.000000e+00 1940.0
19 TraesCS5A01G221400 chr5B 86.337 1676 122 47 293 1922 394628733 394627119 0.000000e+00 1727.0
20 TraesCS5A01G221400 chr5B 89.337 1116 74 21 838 1928 394572568 394571473 0.000000e+00 1360.0
21 TraesCS5A01G221400 chr5B 81.498 227 31 7 293 511 394573000 394572777 2.950000e-40 176.0
22 TraesCS5A01G221400 chr6B 80.989 263 37 12 39 294 629165704 629165960 2.270000e-46 196.0
23 TraesCS5A01G221400 chr6B 81.498 227 32 9 37 258 679364217 679363996 8.210000e-41 178.0
24 TraesCS5A01G221400 chr1B 85.714 182 22 4 1 181 132933330 132933508 3.790000e-44 189.0
25 TraesCS5A01G221400 chr2B 80.000 270 41 12 1 264 682176279 682176017 1.360000e-43 187.0
26 TraesCS5A01G221400 chr2B 91.129 124 8 3 1 124 503435637 503435757 6.400000e-37 165.0
27 TraesCS5A01G221400 chr2B 92.157 51 2 2 2625 2674 12878759 12878808 1.430000e-08 71.3
28 TraesCS5A01G221400 chr2D 83.495 206 21 13 75 274 85828435 85828237 2.280000e-41 180.0
29 TraesCS5A01G221400 chr2D 80.583 206 32 7 73 274 112918100 112917899 4.980000e-33 152.0
30 TraesCS5A01G221400 chr1D 81.373 204 30 7 75 274 450750320 450750519 2.980000e-35 159.0
31 TraesCS5A01G221400 chr1D 81.373 204 29 8 75 274 332950654 332950852 1.070000e-34 158.0
32 TraesCS5A01G221400 chr3B 77.860 271 47 11 1 265 467069122 467069385 3.850000e-34 156.0
33 TraesCS5A01G221400 chr3B 95.238 42 1 1 2201 2241 45281582 45281623 6.670000e-07 65.8
34 TraesCS5A01G221400 chr3D 80.882 204 31 7 75 274 156976411 156976212 1.380000e-33 154.0
35 TraesCS5A01G221400 chr3D 93.182 44 3 0 2617 2660 1919606 1919563 6.670000e-07 65.8
36 TraesCS5A01G221400 chr7D 93.220 59 4 0 2617 2675 150491913 150491855 1.420000e-13 87.9
37 TraesCS5A01G221400 chr7D 95.652 46 2 0 2625 2670 213539312 213539357 1.110000e-09 75.0
38 TraesCS5A01G221400 chr7A 91.071 56 5 0 2619 2674 542637227 542637282 3.080000e-10 76.8
39 TraesCS5A01G221400 chr4D 92.000 50 4 0 2625 2674 482779610 482779659 1.430000e-08 71.3
40 TraesCS5A01G221400 chrUn 95.238 42 1 1 2201 2241 267179540 267179499 6.670000e-07 65.8
41 TraesCS5A01G221400 chrUn 95.238 42 1 1 2201 2241 321536363 321536404 6.670000e-07 65.8
42 TraesCS5A01G221400 chr3A 97.222 36 1 0 2625 2660 6791858 6791823 8.630000e-06 62.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G221400 chr5A 437398076 437400960 2884 True 5328.000000 5328 100.0000 1 2885 1 chr5A.!!$R1 2884
1 TraesCS5A01G221400 chr5A 437411757 437412846 1089 True 1411.000000 1411 90.0710 815 1924 1 chr5A.!!$R2 1109
2 TraesCS5A01G221400 chr5A 437392224 437393809 1585 True 796.500000 1406 84.8645 293 1928 2 chr5A.!!$R3 1635
3 TraesCS5A01G221400 chr5D 336337963 336340415 2452 False 3343.000000 3343 91.3150 293 2779 1 chr5D.!!$F1 2486
4 TraesCS5A01G221400 chr5D 336238879 336240443 1564 True 2061.000000 2061 90.4530 293 1884 1 chr5D.!!$R1 1591
5 TraesCS5A01G221400 chr5D 336314305 336315902 1597 False 780.000000 1389 84.2220 293 1928 2 chr5D.!!$F2 1635
6 TraesCS5A01G221400 chr5D 336380396 336382691 2295 True 562.333333 1352 82.2890 293 2608 3 chr5D.!!$R4 2315
7 TraesCS5A01G221400 chr5D 336256890 336262623 5733 True 336.500000 647 90.4330 293 2884 6 chr5D.!!$R3 2591
8 TraesCS5A01G221400 chr5B 394580102 394581750 1648 True 1940.000000 1940 88.3020 296 1928 1 chr5B.!!$R1 1632
9 TraesCS5A01G221400 chr5B 394627119 394628733 1614 True 1727.000000 1727 86.3370 293 1922 1 chr5B.!!$R2 1629
10 TraesCS5A01G221400 chr5B 394571473 394573000 1527 True 768.000000 1360 85.4175 293 1928 2 chr5B.!!$R3 1635

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
258 259 0.035534 AGACTCGCTGAGCTCTGAGA 60.036 55.0 26.92 24.73 32.04 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2096 6646 0.234884 GAACCAAAAGTCAGCGTCCG 59.765 55.0 0.0 0.0 0.0 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 4.069232 CAAGTGCGGGAGGAGCGA 62.069 66.667 0.00 0.00 37.44 4.93
27 28 4.070552 AAGTGCGGGAGGAGCGAC 62.071 66.667 0.00 0.00 37.44 5.19
46 47 4.892291 ACCCCGTGGTCACCCTGT 62.892 66.667 0.00 0.00 43.06 4.00
47 48 4.016706 CCCCGTGGTCACCCTGTC 62.017 72.222 0.00 0.00 0.00 3.51
48 49 4.373116 CCCGTGGTCACCCTGTCG 62.373 72.222 0.00 0.00 0.00 4.35
49 50 3.299977 CCGTGGTCACCCTGTCGA 61.300 66.667 0.00 0.00 0.00 4.20
50 51 2.646175 CCGTGGTCACCCTGTCGAT 61.646 63.158 0.00 0.00 0.00 3.59
51 52 1.292223 CGTGGTCACCCTGTCGATT 59.708 57.895 0.00 0.00 0.00 3.34
52 53 0.320421 CGTGGTCACCCTGTCGATTT 60.320 55.000 0.00 0.00 0.00 2.17
54 55 0.036164 TGGTCACCCTGTCGATTTGG 59.964 55.000 0.00 0.00 0.00 3.28
56 57 1.065418 GGTCACCCTGTCGATTTGGAT 60.065 52.381 4.33 0.00 0.00 3.41
57 58 2.169769 GGTCACCCTGTCGATTTGGATA 59.830 50.000 4.33 0.00 0.00 2.59
58 59 3.181454 GGTCACCCTGTCGATTTGGATAT 60.181 47.826 4.33 0.00 0.00 1.63
59 60 4.451900 GTCACCCTGTCGATTTGGATATT 58.548 43.478 4.33 0.00 0.00 1.28
61 62 5.357032 GTCACCCTGTCGATTTGGATATTTT 59.643 40.000 4.33 0.00 0.00 1.82
62 63 5.949354 TCACCCTGTCGATTTGGATATTTTT 59.051 36.000 4.33 0.00 0.00 1.94
82 83 3.913548 TTCCAACCATGTGAAATGACG 57.086 42.857 0.00 0.00 0.00 4.35
83 84 3.133141 TCCAACCATGTGAAATGACGA 57.867 42.857 0.00 0.00 0.00 4.20
85 86 3.885901 TCCAACCATGTGAAATGACGAAA 59.114 39.130 0.00 0.00 0.00 3.46
86 87 4.339530 TCCAACCATGTGAAATGACGAAAA 59.660 37.500 0.00 0.00 0.00 2.29
87 88 5.010516 TCCAACCATGTGAAATGACGAAAAT 59.989 36.000 0.00 0.00 0.00 1.82
88 89 5.118971 CCAACCATGTGAAATGACGAAAATG 59.881 40.000 0.00 0.00 0.00 2.32
89 90 4.236935 ACCATGTGAAATGACGAAAATGC 58.763 39.130 0.00 0.00 0.00 3.56
90 91 3.613737 CCATGTGAAATGACGAAAATGCC 59.386 43.478 0.00 0.00 0.00 4.40
91 92 3.296322 TGTGAAATGACGAAAATGCCC 57.704 42.857 0.00 0.00 0.00 5.36
92 93 2.890311 TGTGAAATGACGAAAATGCCCT 59.110 40.909 0.00 0.00 0.00 5.19
93 94 3.057596 TGTGAAATGACGAAAATGCCCTC 60.058 43.478 0.00 0.00 0.00 4.30
94 95 2.161410 TGAAATGACGAAAATGCCCTCG 59.839 45.455 0.00 0.00 40.87 4.63
95 96 1.094785 AATGACGAAAATGCCCTCGG 58.905 50.000 0.00 0.00 39.38 4.63
109 110 3.385749 CTCGGCGGGGCACTGTAAT 62.386 63.158 7.21 0.00 0.00 1.89
110 111 2.437716 CGGCGGGGCACTGTAATT 60.438 61.111 0.00 0.00 0.00 1.40
112 113 1.433837 CGGCGGGGCACTGTAATTAC 61.434 60.000 8.75 8.75 0.00 1.89
113 114 1.433837 GGCGGGGCACTGTAATTACG 61.434 60.000 10.92 8.21 0.00 3.18
114 115 2.011453 CGGGGCACTGTAATTACGC 58.989 57.895 10.92 8.07 0.00 4.42
115 116 1.758319 CGGGGCACTGTAATTACGCG 61.758 60.000 3.53 3.53 0.00 6.01
116 117 0.741927 GGGGCACTGTAATTACGCGT 60.742 55.000 19.17 19.17 0.00 6.01
117 118 0.372334 GGGCACTGTAATTACGCGTG 59.628 55.000 24.59 23.19 35.03 5.34
118 119 0.372334 GGCACTGTAATTACGCGTGG 59.628 55.000 24.59 15.23 33.57 4.94
119 120 1.073177 GCACTGTAATTACGCGTGGT 58.927 50.000 24.59 7.27 33.57 4.16
120 121 1.201877 GCACTGTAATTACGCGTGGTG 60.202 52.381 24.59 17.70 33.57 4.17
121 122 1.392168 CACTGTAATTACGCGTGGTGG 59.608 52.381 24.59 7.83 31.09 4.61
122 123 0.372334 CTGTAATTACGCGTGGTGGC 59.628 55.000 24.59 9.92 0.00 5.01
123 124 0.320508 TGTAATTACGCGTGGTGGCA 60.321 50.000 24.59 12.55 0.00 4.92
124 125 0.095762 GTAATTACGCGTGGTGGCAC 59.904 55.000 24.59 9.70 0.00 5.01
132 133 4.134623 GTGGTGGCACGAACTTGA 57.865 55.556 12.17 0.00 0.00 3.02
133 134 1.941812 GTGGTGGCACGAACTTGAG 59.058 57.895 12.17 0.00 0.00 3.02
134 135 1.891919 TGGTGGCACGAACTTGAGC 60.892 57.895 12.17 0.00 0.00 4.26
136 137 3.345808 TGGCACGAACTTGAGCGC 61.346 61.111 0.00 0.00 0.00 5.92
137 138 3.345808 GGCACGAACTTGAGCGCA 61.346 61.111 11.47 0.00 0.00 6.09
138 139 2.127609 GCACGAACTTGAGCGCAC 60.128 61.111 11.47 3.13 0.00 5.34
139 140 2.598632 GCACGAACTTGAGCGCACT 61.599 57.895 11.47 0.00 0.00 4.40
140 141 1.282248 GCACGAACTTGAGCGCACTA 61.282 55.000 11.47 0.00 0.00 2.74
141 142 1.350193 CACGAACTTGAGCGCACTAT 58.650 50.000 11.47 0.00 0.00 2.12
142 143 1.726791 CACGAACTTGAGCGCACTATT 59.273 47.619 11.47 0.00 0.00 1.73
143 144 1.993370 ACGAACTTGAGCGCACTATTC 59.007 47.619 11.47 8.09 0.00 1.75
145 146 2.604914 CGAACTTGAGCGCACTATTCAT 59.395 45.455 11.47 0.00 0.00 2.57
148 149 3.338249 ACTTGAGCGCACTATTCATTGT 58.662 40.909 11.47 3.71 0.00 2.71
149 150 4.503910 ACTTGAGCGCACTATTCATTGTA 58.496 39.130 11.47 0.00 0.00 2.41
150 151 4.568359 ACTTGAGCGCACTATTCATTGTAG 59.432 41.667 11.47 0.74 0.00 2.74
152 153 2.866156 GAGCGCACTATTCATTGTAGCA 59.134 45.455 11.47 0.00 0.00 3.49
153 154 2.868583 AGCGCACTATTCATTGTAGCAG 59.131 45.455 11.47 0.00 0.00 4.24
154 155 2.609459 GCGCACTATTCATTGTAGCAGT 59.391 45.455 0.30 0.00 0.00 4.40
156 157 3.865164 CGCACTATTCATTGTAGCAGTGA 59.135 43.478 0.00 0.00 36.37 3.41
160 161 5.176406 CACTATTCATTGTAGCAGTGATCGG 59.824 44.000 0.00 0.00 36.37 4.18
162 163 3.610040 TCATTGTAGCAGTGATCGGTT 57.390 42.857 0.00 0.00 0.00 4.44
176 177 4.083746 GGTTTCGATCCGACGGAC 57.916 61.111 21.02 12.25 34.89 4.79
177 178 1.213537 GGTTTCGATCCGACGGACA 59.786 57.895 21.02 2.99 34.89 4.02
179 180 0.169672 GTTTCGATCCGACGGACAGA 59.830 55.000 21.02 18.24 34.89 3.41
180 181 0.450583 TTTCGATCCGACGGACAGAG 59.549 55.000 21.02 10.84 34.89 3.35
181 182 0.675837 TTCGATCCGACGGACAGAGT 60.676 55.000 21.02 1.84 34.89 3.24
182 183 1.088340 TCGATCCGACGGACAGAGTC 61.088 60.000 21.02 11.60 32.98 3.36
187 188 2.486042 GACGGACAGAGTCGCTCC 59.514 66.667 3.66 0.12 32.65 4.70
188 189 3.053849 GACGGACAGAGTCGCTCCC 62.054 68.421 3.66 0.00 32.65 4.30
189 190 4.180946 CGGACAGAGTCGCTCCCG 62.181 72.222 3.66 6.10 34.77 5.14
190 191 2.750637 GGACAGAGTCGCTCCCGA 60.751 66.667 3.66 0.00 42.01 5.14
191 192 2.766400 GGACAGAGTCGCTCCCGAG 61.766 68.421 3.66 0.00 45.38 4.63
200 201 2.909965 GCTCCCGAGCGAGATCCT 60.910 66.667 0.04 0.00 45.29 3.24
203 204 1.570347 CTCCCGAGCGAGATCCTACG 61.570 65.000 0.00 0.00 30.97 3.51
204 205 2.618219 CCCGAGCGAGATCCTACGG 61.618 68.421 0.00 0.00 40.03 4.02
207 208 1.284408 GAGCGAGATCCTACGGCTG 59.716 63.158 0.00 0.00 0.00 4.85
208 209 1.152943 AGCGAGATCCTACGGCTGA 60.153 57.895 0.00 0.00 0.00 4.26
209 210 0.752009 AGCGAGATCCTACGGCTGAA 60.752 55.000 0.00 0.00 0.00 3.02
210 211 0.102481 GCGAGATCCTACGGCTGAAA 59.898 55.000 0.00 0.00 0.00 2.69
211 212 1.470979 GCGAGATCCTACGGCTGAAAA 60.471 52.381 0.00 0.00 0.00 2.29
212 213 2.194271 CGAGATCCTACGGCTGAAAAC 58.806 52.381 0.00 0.00 0.00 2.43
214 215 0.651031 GATCCTACGGCTGAAAACGC 59.349 55.000 0.00 0.00 0.00 4.84
215 216 0.036765 ATCCTACGGCTGAAAACGCA 60.037 50.000 0.00 0.00 0.00 5.24
216 217 0.036765 TCCTACGGCTGAAAACGCAT 60.037 50.000 0.00 0.00 0.00 4.73
217 218 0.373716 CCTACGGCTGAAAACGCATC 59.626 55.000 0.00 0.00 0.00 3.91
219 220 1.463056 CTACGGCTGAAAACGCATCAA 59.537 47.619 0.00 0.00 0.00 2.57
220 221 0.238289 ACGGCTGAAAACGCATCAAG 59.762 50.000 0.00 0.00 0.00 3.02
223 224 2.604373 CGGCTGAAAACGCATCAAGAAA 60.604 45.455 0.00 0.00 0.00 2.52
224 225 2.726241 GGCTGAAAACGCATCAAGAAAC 59.274 45.455 0.00 0.00 0.00 2.78
225 226 2.726241 GCTGAAAACGCATCAAGAAACC 59.274 45.455 0.00 0.00 0.00 3.27
226 227 2.973224 CTGAAAACGCATCAAGAAACCG 59.027 45.455 0.00 0.00 0.00 4.44
227 228 2.614520 TGAAAACGCATCAAGAAACCGA 59.385 40.909 0.00 0.00 0.00 4.69
228 229 3.252215 TGAAAACGCATCAAGAAACCGAT 59.748 39.130 0.00 0.00 0.00 4.18
230 231 1.369625 ACGCATCAAGAAACCGATCC 58.630 50.000 0.00 0.00 0.00 3.36
231 232 0.301687 CGCATCAAGAAACCGATCCG 59.698 55.000 0.00 0.00 0.00 4.18
233 234 1.327764 GCATCAAGAAACCGATCCGAC 59.672 52.381 0.00 0.00 0.00 4.79
234 235 1.588404 CATCAAGAAACCGATCCGACG 59.412 52.381 0.00 0.00 0.00 5.12
242 243 4.609247 CGATCCGACGGCCGAGAC 62.609 72.222 35.90 20.73 41.76 3.36
243 244 3.210528 GATCCGACGGCCGAGACT 61.211 66.667 35.90 9.58 41.76 3.24
244 245 3.183776 GATCCGACGGCCGAGACTC 62.184 68.421 35.90 18.40 41.76 3.36
248 249 4.838486 GACGGCCGAGACTCGCTG 62.838 72.222 35.90 19.69 38.82 5.18
250 251 4.544689 CGGCCGAGACTCGCTGAG 62.545 72.222 24.07 6.90 38.82 3.35
251 252 4.863925 GGCCGAGACTCGCTGAGC 62.864 72.222 19.55 16.09 38.82 4.26
252 253 3.821055 GCCGAGACTCGCTGAGCT 61.821 66.667 19.55 0.00 38.82 4.09
253 254 2.407210 CCGAGACTCGCTGAGCTC 59.593 66.667 19.55 6.82 38.82 4.09
255 256 1.062365 CGAGACTCGCTGAGCTCTG 59.938 63.158 16.19 15.96 33.77 3.35
256 257 1.365368 CGAGACTCGCTGAGCTCTGA 61.365 60.000 23.35 13.16 33.77 3.27
258 259 0.035534 AGACTCGCTGAGCTCTGAGA 60.036 55.000 26.92 24.73 32.04 3.27
259 260 0.808125 GACTCGCTGAGCTCTGAGAA 59.192 55.000 26.92 13.78 32.04 2.87
260 261 0.525761 ACTCGCTGAGCTCTGAGAAC 59.474 55.000 26.92 10.66 32.04 3.01
261 262 0.523125 CTCGCTGAGCTCTGAGAACG 60.523 60.000 23.26 16.83 0.00 3.95
262 263 2.157701 CGCTGAGCTCTGAGAACGC 61.158 63.158 23.35 9.18 0.00 4.84
264 265 0.389687 GCTGAGCTCTGAGAACGCTT 60.390 55.000 23.35 0.00 33.47 4.68
265 266 1.135257 GCTGAGCTCTGAGAACGCTTA 60.135 52.381 23.35 0.00 33.47 3.09
266 267 2.481104 GCTGAGCTCTGAGAACGCTTAT 60.481 50.000 23.35 0.00 33.47 1.73
268 269 2.755103 TGAGCTCTGAGAACGCTTATGA 59.245 45.455 16.19 0.00 33.47 2.15
269 270 3.382865 TGAGCTCTGAGAACGCTTATGAT 59.617 43.478 16.19 0.00 33.47 2.45
272 273 3.980775 GCTCTGAGAACGCTTATGATCTC 59.019 47.826 9.28 0.00 38.98 2.75
273 274 4.545610 CTCTGAGAACGCTTATGATCTCC 58.454 47.826 0.00 0.00 37.99 3.71
274 275 4.211125 TCTGAGAACGCTTATGATCTCCT 58.789 43.478 0.00 0.00 37.99 3.69
275 276 4.037327 TCTGAGAACGCTTATGATCTCCTG 59.963 45.833 0.00 0.00 37.99 3.86
276 277 3.056304 GAGAACGCTTATGATCTCCTGC 58.944 50.000 0.00 0.00 33.75 4.85
277 278 2.697751 AGAACGCTTATGATCTCCTGCT 59.302 45.455 0.00 0.00 0.00 4.24
278 279 3.891977 AGAACGCTTATGATCTCCTGCTA 59.108 43.478 0.00 0.00 0.00 3.49
279 280 4.526262 AGAACGCTTATGATCTCCTGCTAT 59.474 41.667 0.00 0.00 0.00 2.97
280 281 4.185467 ACGCTTATGATCTCCTGCTATG 57.815 45.455 0.00 0.00 0.00 2.23
281 282 2.928757 CGCTTATGATCTCCTGCTATGC 59.071 50.000 0.00 0.00 0.00 3.14
283 284 4.577875 GCTTATGATCTCCTGCTATGCTT 58.422 43.478 0.00 0.00 0.00 3.91
287 288 7.336427 GCTTATGATCTCCTGCTATGCTTATTT 59.664 37.037 0.00 0.00 0.00 1.40
289 290 6.430962 TGATCTCCTGCTATGCTTATTTCT 57.569 37.500 0.00 0.00 0.00 2.52
290 291 6.228995 TGATCTCCTGCTATGCTTATTTCTG 58.771 40.000 0.00 0.00 0.00 3.02
359 4621 5.055642 TGTACTATGTTCTTCGTGTGAGG 57.944 43.478 0.00 0.00 0.00 3.86
360 4622 4.763279 TGTACTATGTTCTTCGTGTGAGGA 59.237 41.667 0.00 0.00 0.00 3.71
361 4623 4.866508 ACTATGTTCTTCGTGTGAGGAA 57.133 40.909 0.00 0.00 37.82 3.36
362 4624 5.407407 ACTATGTTCTTCGTGTGAGGAAT 57.593 39.130 0.00 0.00 41.55 3.01
363 4625 5.171476 ACTATGTTCTTCGTGTGAGGAATG 58.829 41.667 0.00 0.00 41.55 2.67
364 4626 3.744238 TGTTCTTCGTGTGAGGAATGA 57.256 42.857 0.00 0.00 41.55 2.57
365 4627 3.653344 TGTTCTTCGTGTGAGGAATGAG 58.347 45.455 0.00 0.00 41.55 2.90
366 4628 2.996621 GTTCTTCGTGTGAGGAATGAGG 59.003 50.000 0.00 0.00 41.55 3.86
409 4682 6.203723 GGTCTCAGGCTGCTAATTATTACTTG 59.796 42.308 10.34 0.00 0.00 3.16
432 4707 4.147133 GCAAAACAAATGAGAAAGCTCGAC 59.853 41.667 0.00 0.00 44.33 4.20
473 4762 7.334090 AGCAAAGAAAGTGCATAGAGATCTTA 58.666 34.615 0.00 0.00 44.74 2.10
511 4805 1.625818 GTCTCCTCCTCAACACCATGT 59.374 52.381 0.00 0.00 0.00 3.21
512 4806 1.902508 TCTCCTCCTCAACACCATGTC 59.097 52.381 0.00 0.00 0.00 3.06
513 4807 1.625315 CTCCTCCTCAACACCATGTCA 59.375 52.381 0.00 0.00 0.00 3.58
514 4808 1.625315 TCCTCCTCAACACCATGTCAG 59.375 52.381 0.00 0.00 0.00 3.51
515 4809 1.625315 CCTCCTCAACACCATGTCAGA 59.375 52.381 0.00 0.00 0.00 3.27
516 4810 2.613977 CCTCCTCAACACCATGTCAGAC 60.614 54.545 0.00 0.00 0.00 3.51
517 4811 1.000843 TCCTCAACACCATGTCAGACG 59.999 52.381 0.00 0.00 0.00 4.18
518 4812 1.000843 CCTCAACACCATGTCAGACGA 59.999 52.381 0.00 0.00 0.00 4.20
519 4813 2.061773 CTCAACACCATGTCAGACGAC 58.938 52.381 0.00 0.00 42.93 4.34
520 4814 1.686587 TCAACACCATGTCAGACGACT 59.313 47.619 0.00 0.00 43.06 4.18
521 4815 2.888414 TCAACACCATGTCAGACGACTA 59.112 45.455 0.00 0.00 43.06 2.59
522 4816 3.057526 TCAACACCATGTCAGACGACTAG 60.058 47.826 0.00 0.00 43.06 2.57
523 4817 1.202582 ACACCATGTCAGACGACTAGC 59.797 52.381 0.00 0.00 43.06 3.42
524 4818 1.202348 CACCATGTCAGACGACTAGCA 59.798 52.381 0.00 0.00 43.06 3.49
525 4819 1.893137 ACCATGTCAGACGACTAGCAA 59.107 47.619 0.00 0.00 43.06 3.91
526 4820 2.299013 ACCATGTCAGACGACTAGCAAA 59.701 45.455 0.00 0.00 43.06 3.68
527 4821 3.244078 ACCATGTCAGACGACTAGCAAAA 60.244 43.478 0.00 0.00 43.06 2.44
528 4822 3.745975 CCATGTCAGACGACTAGCAAAAA 59.254 43.478 0.00 0.00 43.06 1.94
620 4940 3.628942 CCTCCACAACACCATGTCATATG 59.371 47.826 0.00 0.00 0.00 1.78
631 4951 6.127083 ACACCATGTCATATGTGTACTGATCA 60.127 38.462 15.21 0.00 0.00 2.92
632 4952 6.932960 CACCATGTCATATGTGTACTGATCAT 59.067 38.462 1.90 0.00 0.00 2.45
679 5000 0.877649 GTCGCATGCATGATCGACCT 60.878 55.000 32.35 0.00 43.67 3.85
710 5048 1.227118 GCTCTTCTAGGCTGCCGAC 60.227 63.158 13.96 0.00 0.00 4.79
748 5106 6.430451 GTCGTGTCAGACAAAGAATTTCAAT 58.570 36.000 4.32 0.00 35.03 2.57
760 5118 5.272283 AGAATTTCAATCATGCATGGTCC 57.728 39.130 25.97 4.10 0.00 4.46
880 5296 2.354203 CGGCCTCTATAAATCTCCAGCC 60.354 54.545 0.00 0.00 34.50 4.85
884 5300 4.402793 GCCTCTATAAATCTCCAGCCGATA 59.597 45.833 0.00 0.00 0.00 2.92
885 5301 5.105310 GCCTCTATAAATCTCCAGCCGATAA 60.105 44.000 0.00 0.00 0.00 1.75
886 5302 6.334202 CCTCTATAAATCTCCAGCCGATAAC 58.666 44.000 0.00 0.00 0.00 1.89
887 5303 6.071334 CCTCTATAAATCTCCAGCCGATAACA 60.071 42.308 0.00 0.00 0.00 2.41
937 5376 1.262683 CAAAGCGCTATAAGCTCAGCC 59.737 52.381 12.05 3.45 45.31 4.85
938 5377 0.598680 AAGCGCTATAAGCTCAGCCG 60.599 55.000 12.05 0.00 45.31 5.52
939 5378 2.024319 GCGCTATAAGCTCAGCCGG 61.024 63.158 0.00 0.00 39.60 6.13
940 5379 1.364171 CGCTATAAGCTCAGCCGGT 59.636 57.895 1.90 0.00 39.60 5.28
941 5380 0.664767 CGCTATAAGCTCAGCCGGTC 60.665 60.000 1.90 0.00 39.60 4.79
942 5381 0.389391 GCTATAAGCTCAGCCGGTCA 59.611 55.000 1.90 0.00 38.45 4.02
943 5382 1.604185 GCTATAAGCTCAGCCGGTCAG 60.604 57.143 1.90 0.00 38.45 3.51
944 5383 0.389391 TATAAGCTCAGCCGGTCAGC 59.611 55.000 1.90 8.39 0.00 4.26
1149 5622 3.670377 GGTGGCGGTGGCAAAGAC 61.670 66.667 0.00 0.00 40.46 3.01
1150 5623 2.904866 GTGGCGGTGGCAAAGACA 60.905 61.111 0.00 0.00 40.46 3.41
1236 5709 1.937846 CGGACGATACGACGGCTTG 60.938 63.158 0.00 0.00 41.44 4.01
1254 5727 4.783621 GTCATCAGCGGCAGCCCA 62.784 66.667 5.63 0.00 46.67 5.36
1371 5844 1.526887 CCATCAGGTGGTATGCCGT 59.473 57.895 0.00 0.00 43.44 5.68
1509 5982 0.537188 CCCAGTACGCCAAGATCACT 59.463 55.000 0.00 0.00 0.00 3.41
1605 6094 2.507102 ATGTTCTGCGTCGGCGAG 60.507 61.111 16.53 8.20 44.10 5.03
1877 6390 5.734503 GCAAAAGTTTCCTCAAGACTGAAGG 60.735 44.000 0.00 0.00 0.00 3.46
1979 6505 5.695851 AACAAAGCTTGGTAGTCAGATTG 57.304 39.130 6.98 0.00 34.12 2.67
1991 6535 5.934625 GGTAGTCAGATTGTTGTTGTCATCT 59.065 40.000 0.00 0.00 0.00 2.90
1992 6536 7.097192 GGTAGTCAGATTGTTGTTGTCATCTA 58.903 38.462 0.00 0.00 0.00 1.98
1995 6539 7.220030 AGTCAGATTGTTGTTGTCATCTACTT 58.780 34.615 0.00 0.00 0.00 2.24
1996 6540 7.386299 AGTCAGATTGTTGTTGTCATCTACTTC 59.614 37.037 0.00 0.00 0.00 3.01
1997 6541 6.650807 TCAGATTGTTGTTGTCATCTACTTCC 59.349 38.462 0.00 0.00 0.00 3.46
1998 6542 5.940470 AGATTGTTGTTGTCATCTACTTCCC 59.060 40.000 0.00 0.00 0.00 3.97
2082 6632 5.576563 TCAGGTAGGGACAGAAAAATTCA 57.423 39.130 0.00 0.00 0.00 2.57
2096 6646 8.406297 ACAGAAAAATTCAAGAACAAGTAGACC 58.594 33.333 0.00 0.00 0.00 3.85
2216 6767 7.693969 TTTCCTGTTACTACTACCTCTGTAC 57.306 40.000 0.00 0.00 0.00 2.90
2278 6835 5.241506 CCATCTTACAATTGTTATGGCGGAT 59.758 40.000 23.38 10.62 30.42 4.18
2326 6883 5.046878 TGAACTAAGACCAGGAAATTCGCTA 60.047 40.000 0.00 0.00 0.00 4.26
2402 6959 4.838486 GGCCGCTCTCGTGACTCG 62.838 72.222 0.00 0.00 41.41 4.18
2424 6981 5.041940 CGGAAGTGTAGAAAGTATAGTGCC 58.958 45.833 0.00 0.00 0.00 5.01
2425 6982 5.163540 CGGAAGTGTAGAAAGTATAGTGCCT 60.164 44.000 0.00 0.00 0.00 4.75
2426 6983 6.274579 GGAAGTGTAGAAAGTATAGTGCCTC 58.725 44.000 0.00 0.00 0.00 4.70
2427 6984 6.127423 GGAAGTGTAGAAAGTATAGTGCCTCA 60.127 42.308 0.00 0.00 0.00 3.86
2428 6985 7.418025 GGAAGTGTAGAAAGTATAGTGCCTCAT 60.418 40.741 0.00 0.00 0.00 2.90
2467 7024 5.562623 GTCAAAGTAATTGTCGCTTAAACGG 59.437 40.000 0.00 0.00 40.11 4.44
2470 7027 6.399204 AAGTAATTGTCGCTTAAACGGTAG 57.601 37.500 0.00 0.00 0.00 3.18
2517 7074 5.045213 TGGAGGGCTTAAATGTACTTGATGA 60.045 40.000 0.00 0.00 0.00 2.92
2519 7076 6.016777 GGAGGGCTTAAATGTACTTGATGATG 60.017 42.308 0.00 0.00 0.00 3.07
2521 7078 6.319658 AGGGCTTAAATGTACTTGATGATGTG 59.680 38.462 0.00 0.00 0.00 3.21
2522 7079 5.973565 GGCTTAAATGTACTTGATGATGTGC 59.026 40.000 0.00 0.00 0.00 4.57
2523 7080 6.404623 GGCTTAAATGTACTTGATGATGTGCA 60.405 38.462 0.00 0.00 33.73 4.57
2578 7135 3.181468 TGCTTGCATGTGTTGGAAAATGA 60.181 39.130 1.14 0.00 35.02 2.57
2593 7150 7.111247 TGGAAAATGAAATATGTAGGGCTTG 57.889 36.000 0.00 0.00 0.00 4.01
2636 7193 0.798009 GCCGCGTGAATTGGTTGATG 60.798 55.000 4.92 0.00 0.00 3.07
2637 7194 0.801872 CCGCGTGAATTGGTTGATGA 59.198 50.000 4.92 0.00 0.00 2.92
2638 7195 1.198867 CCGCGTGAATTGGTTGATGAA 59.801 47.619 4.92 0.00 0.00 2.57
2639 7196 2.351253 CCGCGTGAATTGGTTGATGAAA 60.351 45.455 4.92 0.00 0.00 2.69
2640 7197 3.304257 CGCGTGAATTGGTTGATGAAAA 58.696 40.909 0.00 0.00 0.00 2.29
2641 7198 3.919804 CGCGTGAATTGGTTGATGAAAAT 59.080 39.130 0.00 0.00 0.00 1.82
2642 7199 4.385447 CGCGTGAATTGGTTGATGAAAATT 59.615 37.500 0.00 0.00 0.00 1.82
2643 7200 5.107530 CGCGTGAATTGGTTGATGAAAATTT 60.108 36.000 0.00 0.00 0.00 1.82
2644 7201 6.088749 CGCGTGAATTGGTTGATGAAAATTTA 59.911 34.615 0.00 0.00 0.00 1.40
2645 7202 7.447430 GCGTGAATTGGTTGATGAAAATTTAG 58.553 34.615 0.00 0.00 0.00 1.85
2646 7203 7.411804 GCGTGAATTGGTTGATGAAAATTTAGG 60.412 37.037 0.00 0.00 0.00 2.69
2647 7204 7.598493 CGTGAATTGGTTGATGAAAATTTAGGT 59.402 33.333 0.00 0.00 0.00 3.08
2648 7205 9.271828 GTGAATTGGTTGATGAAAATTTAGGTT 57.728 29.630 0.00 0.00 0.00 3.50
2649 7206 9.270640 TGAATTGGTTGATGAAAATTTAGGTTG 57.729 29.630 0.00 0.00 0.00 3.77
2650 7207 9.487790 GAATTGGTTGATGAAAATTTAGGTTGA 57.512 29.630 0.00 0.00 0.00 3.18
2684 7241 7.651704 AGAAACAAAATTAAAATGGACCGACTG 59.348 33.333 0.00 0.00 0.00 3.51
2692 7249 7.786178 TTAAAATGGACCGACTGATGATTAG 57.214 36.000 0.00 0.00 0.00 1.73
2700 7257 3.119291 CGACTGATGATTAGGTGACTGC 58.881 50.000 0.00 0.00 43.88 4.40
2799 7356 8.840833 AACAAAAGTTGACTAACCAAAATTGT 57.159 26.923 0.00 0.00 37.52 2.71
2800 7357 9.930693 AACAAAAGTTGACTAACCAAAATTGTA 57.069 25.926 0.00 0.00 37.52 2.41
2801 7358 9.581099 ACAAAAGTTGACTAACCAAAATTGTAG 57.419 29.630 0.00 0.00 37.52 2.74
2802 7359 9.581099 CAAAAGTTGACTAACCAAAATTGTAGT 57.419 29.630 0.00 0.00 37.52 2.73
2804 7361 9.797556 AAAGTTGACTAACCAAAATTGTAGTTC 57.202 29.630 0.00 0.00 37.52 3.01
2805 7362 8.514330 AGTTGACTAACCAAAATTGTAGTTCA 57.486 30.769 0.00 0.00 37.52 3.18
2806 7363 8.962679 AGTTGACTAACCAAAATTGTAGTTCAA 58.037 29.630 0.00 0.00 37.52 2.69
2808 7365 9.959749 TTGACTAACCAAAATTGTAGTTCAATC 57.040 29.630 0.00 0.00 44.85 2.67
2809 7366 8.286800 TGACTAACCAAAATTGTAGTTCAATCG 58.713 33.333 0.00 0.00 44.85 3.34
2810 7367 8.385898 ACTAACCAAAATTGTAGTTCAATCGA 57.614 30.769 0.00 0.00 44.85 3.59
2811 7368 9.010029 ACTAACCAAAATTGTAGTTCAATCGAT 57.990 29.630 0.00 0.00 44.85 3.59
2812 7369 9.840427 CTAACCAAAATTGTAGTTCAATCGATT 57.160 29.630 4.39 4.39 44.85 3.34
2814 7371 8.742554 ACCAAAATTGTAGTTCAATCGATTTC 57.257 30.769 8.21 2.42 44.85 2.17
2815 7372 7.812669 ACCAAAATTGTAGTTCAATCGATTTCC 59.187 33.333 8.21 0.00 44.85 3.13
2816 7373 7.275560 CCAAAATTGTAGTTCAATCGATTTCCC 59.724 37.037 8.21 0.00 44.85 3.97
2817 7374 7.703058 AAATTGTAGTTCAATCGATTTCCCT 57.297 32.000 8.21 6.67 44.85 4.20
2818 7375 6.927294 ATTGTAGTTCAATCGATTTCCCTC 57.073 37.500 8.21 0.00 42.35 4.30
2819 7376 4.430007 TGTAGTTCAATCGATTTCCCTCG 58.570 43.478 8.21 0.00 39.99 4.63
2820 7377 2.906354 AGTTCAATCGATTTCCCTCGG 58.094 47.619 8.21 0.00 39.13 4.63
2821 7378 2.500098 AGTTCAATCGATTTCCCTCGGA 59.500 45.455 8.21 0.00 39.13 4.55
2822 7379 3.134804 AGTTCAATCGATTTCCCTCGGAT 59.865 43.478 8.21 0.00 39.13 4.18
2823 7380 4.344102 AGTTCAATCGATTTCCCTCGGATA 59.656 41.667 8.21 0.00 39.13 2.59
2824 7381 4.521130 TCAATCGATTTCCCTCGGATAG 57.479 45.455 8.21 0.00 39.13 2.08
2825 7382 2.996621 CAATCGATTTCCCTCGGATAGC 59.003 50.000 8.21 0.00 39.13 2.97
2826 7383 0.966920 TCGATTTCCCTCGGATAGCC 59.033 55.000 0.00 0.00 39.13 3.93
2827 7384 0.969894 CGATTTCCCTCGGATAGCCT 59.030 55.000 0.00 0.00 35.03 4.58
2828 7385 1.344763 CGATTTCCCTCGGATAGCCTT 59.655 52.381 0.00 0.00 35.03 4.35
2829 7386 2.561419 CGATTTCCCTCGGATAGCCTTA 59.439 50.000 0.00 0.00 35.03 2.69
2830 7387 3.614390 CGATTTCCCTCGGATAGCCTTAC 60.614 52.174 0.00 0.00 35.03 2.34
2831 7388 2.769602 TTCCCTCGGATAGCCTTACT 57.230 50.000 0.00 0.00 0.00 2.24
2832 7389 2.289592 TCCCTCGGATAGCCTTACTC 57.710 55.000 0.00 0.00 0.00 2.59
2833 7390 1.497716 TCCCTCGGATAGCCTTACTCA 59.502 52.381 0.00 0.00 0.00 3.41
2834 7391 2.091499 TCCCTCGGATAGCCTTACTCAA 60.091 50.000 0.00 0.00 0.00 3.02
2835 7392 2.297597 CCCTCGGATAGCCTTACTCAAG 59.702 54.545 0.00 0.00 0.00 3.02
2836 7393 2.288518 CCTCGGATAGCCTTACTCAAGC 60.289 54.545 0.00 0.00 0.00 4.01
2837 7394 2.362397 CTCGGATAGCCTTACTCAAGCA 59.638 50.000 0.00 0.00 0.00 3.91
2838 7395 2.965831 TCGGATAGCCTTACTCAAGCAT 59.034 45.455 0.00 0.00 0.00 3.79
2839 7396 3.388024 TCGGATAGCCTTACTCAAGCATT 59.612 43.478 0.00 0.00 0.00 3.56
2840 7397 4.130118 CGGATAGCCTTACTCAAGCATTT 58.870 43.478 0.00 0.00 0.00 2.32
2841 7398 4.576463 CGGATAGCCTTACTCAAGCATTTT 59.424 41.667 0.00 0.00 0.00 1.82
2842 7399 5.504665 CGGATAGCCTTACTCAAGCATTTTG 60.505 44.000 0.00 0.00 0.00 2.44
2843 7400 5.590259 GGATAGCCTTACTCAAGCATTTTGA 59.410 40.000 0.00 0.00 0.00 2.69
2844 7401 6.264067 GGATAGCCTTACTCAAGCATTTTGAT 59.736 38.462 0.00 0.00 0.00 2.57
2845 7402 5.990120 AGCCTTACTCAAGCATTTTGATT 57.010 34.783 0.00 0.00 0.00 2.57
2846 7403 5.958955 AGCCTTACTCAAGCATTTTGATTC 58.041 37.500 0.00 0.00 0.00 2.52
2847 7404 5.477984 AGCCTTACTCAAGCATTTTGATTCA 59.522 36.000 0.00 0.00 0.00 2.57
2848 7405 5.803967 GCCTTACTCAAGCATTTTGATTCAG 59.196 40.000 0.00 0.00 0.00 3.02
2849 7406 6.571150 GCCTTACTCAAGCATTTTGATTCAGT 60.571 38.462 0.00 0.00 0.00 3.41
2850 7407 7.025963 CCTTACTCAAGCATTTTGATTCAGTC 58.974 38.462 0.00 0.00 0.00 3.51
2851 7408 5.039480 ACTCAAGCATTTTGATTCAGTCG 57.961 39.130 0.00 0.00 0.00 4.18
2852 7409 4.083110 ACTCAAGCATTTTGATTCAGTCGG 60.083 41.667 0.00 0.00 0.00 4.79
2853 7410 2.919229 CAAGCATTTTGATTCAGTCGGC 59.081 45.455 0.00 0.00 0.00 5.54
2854 7411 1.131126 AGCATTTTGATTCAGTCGGCG 59.869 47.619 0.00 0.00 0.00 6.46
2855 7412 1.135689 GCATTTTGATTCAGTCGGCGT 60.136 47.619 6.85 0.00 0.00 5.68
2856 7413 2.508867 CATTTTGATTCAGTCGGCGTG 58.491 47.619 6.85 0.00 0.00 5.34
2857 7414 0.871722 TTTTGATTCAGTCGGCGTGG 59.128 50.000 6.85 0.00 0.00 4.94
2858 7415 0.250124 TTTGATTCAGTCGGCGTGGT 60.250 50.000 6.85 0.00 0.00 4.16
2859 7416 0.948623 TTGATTCAGTCGGCGTGGTG 60.949 55.000 6.85 3.02 0.00 4.17
2860 7417 2.740714 GATTCAGTCGGCGTGGTGC 61.741 63.158 6.85 0.00 45.38 5.01
2869 7426 4.794648 GCGTGGTGCCAGCCCATA 62.795 66.667 3.63 0.00 37.76 2.74
2870 7427 2.514592 CGTGGTGCCAGCCCATAG 60.515 66.667 3.63 0.00 33.76 2.23
2871 7428 2.830370 GTGGTGCCAGCCCATAGC 60.830 66.667 3.63 0.00 44.25 2.97
2883 7440 3.703001 GCCCATAGCAATAGCCTAGAA 57.297 47.619 0.00 0.00 43.56 2.10
2884 7441 3.604582 GCCCATAGCAATAGCCTAGAAG 58.395 50.000 0.00 0.00 43.56 2.85
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.069232 TCGCTCCTCCCGCACTTG 62.069 66.667 0.00 0.00 0.00 3.16
38 39 4.771114 AATATCCAAATCGACAGGGTGA 57.229 40.909 0.00 0.00 0.00 4.02
39 40 5.835113 AAAATATCCAAATCGACAGGGTG 57.165 39.130 0.00 0.00 0.00 4.61
59 60 5.046529 CGTCATTTCACATGGTTGGAAAAA 58.953 37.500 0.00 0.00 34.55 1.94
61 62 3.885901 TCGTCATTTCACATGGTTGGAAA 59.114 39.130 0.00 2.27 35.27 3.13
62 63 3.481453 TCGTCATTTCACATGGTTGGAA 58.519 40.909 0.00 0.00 0.00 3.53
63 64 3.133141 TCGTCATTTCACATGGTTGGA 57.867 42.857 0.00 0.00 0.00 3.53
66 67 4.685628 GCATTTTCGTCATTTCACATGGTT 59.314 37.500 0.00 0.00 0.00 3.67
67 68 4.236935 GCATTTTCGTCATTTCACATGGT 58.763 39.130 0.00 0.00 0.00 3.55
68 69 3.613737 GGCATTTTCGTCATTTCACATGG 59.386 43.478 0.00 0.00 0.00 3.66
70 71 3.511146 AGGGCATTTTCGTCATTTCACAT 59.489 39.130 0.00 0.00 0.00 3.21
71 72 2.890311 AGGGCATTTTCGTCATTTCACA 59.110 40.909 0.00 0.00 0.00 3.58
72 73 3.501950 GAGGGCATTTTCGTCATTTCAC 58.498 45.455 0.00 0.00 0.00 3.18
73 74 2.161410 CGAGGGCATTTTCGTCATTTCA 59.839 45.455 0.00 0.00 32.44 2.69
74 75 2.477863 CCGAGGGCATTTTCGTCATTTC 60.478 50.000 0.00 0.00 35.14 2.17
76 77 1.094785 CCGAGGGCATTTTCGTCATT 58.905 50.000 0.00 0.00 35.14 2.57
77 78 2.780595 CCGAGGGCATTTTCGTCAT 58.219 52.632 0.00 0.00 35.14 3.06
78 79 4.294523 CCGAGGGCATTTTCGTCA 57.705 55.556 0.00 0.00 35.14 4.35
91 92 2.869503 AATTACAGTGCCCCGCCGAG 62.870 60.000 0.00 0.00 0.00 4.63
92 93 1.615165 TAATTACAGTGCCCCGCCGA 61.615 55.000 0.00 0.00 0.00 5.54
93 94 1.153329 TAATTACAGTGCCCCGCCG 60.153 57.895 0.00 0.00 0.00 6.46
94 95 1.433837 CGTAATTACAGTGCCCCGCC 61.434 60.000 15.67 0.00 0.00 6.13
95 96 2.011453 CGTAATTACAGTGCCCCGC 58.989 57.895 15.67 0.00 0.00 6.13
97 98 0.741927 ACGCGTAATTACAGTGCCCC 60.742 55.000 11.67 0.00 0.00 5.80
98 99 0.372334 CACGCGTAATTACAGTGCCC 59.628 55.000 13.44 2.41 31.32 5.36
99 100 0.372334 CCACGCGTAATTACAGTGCC 59.628 55.000 24.50 6.47 34.94 5.01
102 103 1.717194 CCACCACGCGTAATTACAGT 58.283 50.000 13.44 11.35 0.00 3.55
103 104 0.372334 GCCACCACGCGTAATTACAG 59.628 55.000 13.44 10.75 0.00 2.74
104 105 0.320508 TGCCACCACGCGTAATTACA 60.321 50.000 13.44 5.26 0.00 2.41
105 106 0.095762 GTGCCACCACGCGTAATTAC 59.904 55.000 13.44 5.47 31.34 1.89
106 107 2.458162 GTGCCACCACGCGTAATTA 58.542 52.632 13.44 0.00 31.34 1.40
115 116 1.941812 CTCAAGTTCGTGCCACCAC 59.058 57.895 0.00 0.00 38.62 4.16
116 117 1.891919 GCTCAAGTTCGTGCCACCA 60.892 57.895 0.00 0.00 0.00 4.17
117 118 2.946762 GCTCAAGTTCGTGCCACC 59.053 61.111 0.00 0.00 0.00 4.61
118 119 2.551270 CGCTCAAGTTCGTGCCAC 59.449 61.111 0.00 0.00 0.00 5.01
119 120 3.345808 GCGCTCAAGTTCGTGCCA 61.346 61.111 0.00 0.00 0.00 4.92
120 121 3.345808 TGCGCTCAAGTTCGTGCC 61.346 61.111 9.73 0.00 35.89 5.01
121 122 1.282248 TAGTGCGCTCAAGTTCGTGC 61.282 55.000 9.73 1.31 37.18 5.34
122 123 1.350193 ATAGTGCGCTCAAGTTCGTG 58.650 50.000 9.73 0.00 0.00 4.35
123 124 1.993370 GAATAGTGCGCTCAAGTTCGT 59.007 47.619 9.73 0.00 0.00 3.85
124 125 1.992667 TGAATAGTGCGCTCAAGTTCG 59.007 47.619 9.73 0.00 0.00 3.95
125 126 4.142816 ACAATGAATAGTGCGCTCAAGTTC 60.143 41.667 9.73 11.15 0.00 3.01
127 128 3.338249 ACAATGAATAGTGCGCTCAAGT 58.662 40.909 9.73 4.19 0.00 3.16
128 129 4.551603 GCTACAATGAATAGTGCGCTCAAG 60.552 45.833 9.73 3.55 0.00 3.02
129 130 3.309682 GCTACAATGAATAGTGCGCTCAA 59.690 43.478 9.73 0.00 0.00 3.02
131 132 2.866156 TGCTACAATGAATAGTGCGCTC 59.134 45.455 9.73 4.74 0.00 5.03
132 133 2.868583 CTGCTACAATGAATAGTGCGCT 59.131 45.455 9.73 4.58 0.00 5.92
133 134 2.609459 ACTGCTACAATGAATAGTGCGC 59.391 45.455 0.00 0.00 0.00 6.09
134 135 3.865164 TCACTGCTACAATGAATAGTGCG 59.135 43.478 0.00 0.00 36.41 5.34
136 137 5.176406 CCGATCACTGCTACAATGAATAGTG 59.824 44.000 0.00 0.00 37.47 2.74
137 138 5.163405 ACCGATCACTGCTACAATGAATAGT 60.163 40.000 0.00 0.00 0.00 2.12
138 139 5.292765 ACCGATCACTGCTACAATGAATAG 58.707 41.667 0.00 0.00 0.00 1.73
139 140 5.276461 ACCGATCACTGCTACAATGAATA 57.724 39.130 0.00 0.00 0.00 1.75
140 141 4.142609 ACCGATCACTGCTACAATGAAT 57.857 40.909 0.00 0.00 0.00 2.57
141 142 3.610040 ACCGATCACTGCTACAATGAA 57.390 42.857 0.00 0.00 0.00 2.57
142 143 3.610040 AACCGATCACTGCTACAATGA 57.390 42.857 0.00 0.00 0.00 2.57
143 144 3.242091 CGAAACCGATCACTGCTACAATG 60.242 47.826 0.00 0.00 0.00 2.82
145 146 2.029739 TCGAAACCGATCACTGCTACAA 60.030 45.455 0.00 0.00 0.00 2.41
160 161 0.169672 TCTGTCCGTCGGATCGAAAC 59.830 55.000 18.75 4.30 37.72 2.78
162 163 0.675837 ACTCTGTCCGTCGGATCGAA 60.676 55.000 18.75 3.09 37.72 3.71
170 171 2.486042 GGAGCGACTCTGTCCGTC 59.514 66.667 6.78 0.00 0.00 4.79
171 172 3.063084 GGGAGCGACTCTGTCCGT 61.063 66.667 6.78 0.00 0.00 4.69
172 173 4.180946 CGGGAGCGACTCTGTCCG 62.181 72.222 6.78 7.44 33.83 4.79
174 175 2.795297 CTCGGGAGCGACTCTGTC 59.205 66.667 6.78 0.00 0.00 3.51
184 185 1.570347 CGTAGGATCTCGCTCGGGAG 61.570 65.000 4.76 4.76 35.32 4.30
185 186 1.597302 CGTAGGATCTCGCTCGGGA 60.597 63.158 0.00 0.00 0.00 5.14
186 187 2.947542 CGTAGGATCTCGCTCGGG 59.052 66.667 0.00 0.00 0.00 5.14
199 200 1.075542 TGATGCGTTTTCAGCCGTAG 58.924 50.000 0.00 0.00 0.00 3.51
200 201 1.463056 CTTGATGCGTTTTCAGCCGTA 59.537 47.619 0.00 0.00 0.00 4.02
203 204 2.704725 TTCTTGATGCGTTTTCAGCC 57.295 45.000 0.00 0.00 0.00 4.85
204 205 2.726241 GGTTTCTTGATGCGTTTTCAGC 59.274 45.455 0.00 0.00 0.00 4.26
207 208 3.262135 TCGGTTTCTTGATGCGTTTTC 57.738 42.857 0.00 0.00 0.00 2.29
208 209 3.365969 GGATCGGTTTCTTGATGCGTTTT 60.366 43.478 0.00 0.00 0.00 2.43
209 210 2.161609 GGATCGGTTTCTTGATGCGTTT 59.838 45.455 0.00 0.00 0.00 3.60
210 211 1.737793 GGATCGGTTTCTTGATGCGTT 59.262 47.619 0.00 0.00 0.00 4.84
211 212 1.369625 GGATCGGTTTCTTGATGCGT 58.630 50.000 0.00 0.00 0.00 5.24
212 213 0.301687 CGGATCGGTTTCTTGATGCG 59.698 55.000 1.96 1.96 46.90 4.73
214 215 1.588404 CGTCGGATCGGTTTCTTGATG 59.412 52.381 0.00 0.00 0.00 3.07
215 216 1.470979 CCGTCGGATCGGTTTCTTGAT 60.471 52.381 4.91 0.00 44.77 2.57
216 217 0.108992 CCGTCGGATCGGTTTCTTGA 60.109 55.000 4.91 0.00 44.77 3.02
217 218 2.369870 CCGTCGGATCGGTTTCTTG 58.630 57.895 4.91 0.00 44.77 3.02
225 226 4.609247 GTCTCGGCCGTCGGATCG 62.609 72.222 27.15 17.56 39.77 3.69
226 227 3.183776 GAGTCTCGGCCGTCGGATC 62.184 68.421 27.15 14.10 39.77 3.36
227 228 3.210528 GAGTCTCGGCCGTCGGAT 61.211 66.667 27.15 8.77 39.77 4.18
231 232 4.838486 CAGCGAGTCTCGGCCGTC 62.838 72.222 27.15 14.54 40.84 4.79
233 234 4.544689 CTCAGCGAGTCTCGGCCG 62.545 72.222 22.12 22.12 40.84 6.13
234 235 4.863925 GCTCAGCGAGTCTCGGCC 62.864 72.222 23.09 8.00 40.84 6.13
235 236 3.749735 GAGCTCAGCGAGTCTCGGC 62.750 68.421 23.09 17.01 40.84 5.54
236 237 2.112198 AGAGCTCAGCGAGTCTCGG 61.112 63.158 23.09 8.18 40.84 4.63
237 238 1.062365 CAGAGCTCAGCGAGTCTCG 59.938 63.158 18.08 18.08 43.89 4.04
238 239 0.378257 CTCAGAGCTCAGCGAGTCTC 59.622 60.000 17.77 15.15 35.05 3.36
240 241 0.808125 TTCTCAGAGCTCAGCGAGTC 59.192 55.000 17.77 0.00 31.39 3.36
242 243 0.523125 CGTTCTCAGAGCTCAGCGAG 60.523 60.000 17.77 17.48 0.00 5.03
243 244 1.503994 CGTTCTCAGAGCTCAGCGA 59.496 57.895 17.77 5.47 0.00 4.93
244 245 2.157701 GCGTTCTCAGAGCTCAGCG 61.158 63.158 17.77 10.01 0.00 5.18
245 246 0.389687 AAGCGTTCTCAGAGCTCAGC 60.390 55.000 17.77 9.13 40.78 4.26
246 247 2.929531 TAAGCGTTCTCAGAGCTCAG 57.070 50.000 17.77 8.39 40.78 3.35
247 248 2.755103 TCATAAGCGTTCTCAGAGCTCA 59.245 45.455 17.77 0.00 40.78 4.26
248 249 3.428746 TCATAAGCGTTCTCAGAGCTC 57.571 47.619 5.27 5.27 40.78 4.09
250 251 3.976169 AGATCATAAGCGTTCTCAGAGC 58.024 45.455 0.00 0.00 0.00 4.09
251 252 4.278170 AGGAGATCATAAGCGTTCTCAGAG 59.722 45.833 0.00 0.00 37.04 3.35
252 253 4.037327 CAGGAGATCATAAGCGTTCTCAGA 59.963 45.833 0.00 0.00 37.04 3.27
253 254 4.297510 CAGGAGATCATAAGCGTTCTCAG 58.702 47.826 0.00 0.00 37.04 3.35
255 256 3.056304 GCAGGAGATCATAAGCGTTCTC 58.944 50.000 0.00 0.00 35.05 2.87
256 257 2.697751 AGCAGGAGATCATAAGCGTTCT 59.302 45.455 0.00 0.00 0.00 3.01
258 259 4.564041 CATAGCAGGAGATCATAAGCGTT 58.436 43.478 0.00 0.00 0.00 4.84
259 260 3.616076 GCATAGCAGGAGATCATAAGCGT 60.616 47.826 0.00 0.00 0.00 5.07
260 261 2.928757 GCATAGCAGGAGATCATAAGCG 59.071 50.000 0.00 0.00 0.00 4.68
261 262 4.205065 AGCATAGCAGGAGATCATAAGC 57.795 45.455 0.00 0.00 0.00 3.09
262 263 8.789825 AAATAAGCATAGCAGGAGATCATAAG 57.210 34.615 0.00 0.00 0.00 1.73
264 265 8.039538 CAGAAATAAGCATAGCAGGAGATCATA 58.960 37.037 0.00 0.00 0.00 2.15
265 266 6.879993 CAGAAATAAGCATAGCAGGAGATCAT 59.120 38.462 0.00 0.00 0.00 2.45
266 267 6.228995 CAGAAATAAGCATAGCAGGAGATCA 58.771 40.000 0.00 0.00 0.00 2.92
268 269 5.309020 TCCAGAAATAAGCATAGCAGGAGAT 59.691 40.000 0.00 0.00 0.00 2.75
269 270 4.655649 TCCAGAAATAAGCATAGCAGGAGA 59.344 41.667 0.00 0.00 0.00 3.71
272 273 4.458295 CCATCCAGAAATAAGCATAGCAGG 59.542 45.833 0.00 0.00 0.00 4.85
273 274 5.311265 TCCATCCAGAAATAAGCATAGCAG 58.689 41.667 0.00 0.00 0.00 4.24
274 275 5.072193 TCTCCATCCAGAAATAAGCATAGCA 59.928 40.000 0.00 0.00 0.00 3.49
275 276 5.555017 TCTCCATCCAGAAATAAGCATAGC 58.445 41.667 0.00 0.00 0.00 2.97
276 277 7.222872 AGTTCTCCATCCAGAAATAAGCATAG 58.777 38.462 0.00 0.00 34.11 2.23
277 278 7.071698 AGAGTTCTCCATCCAGAAATAAGCATA 59.928 37.037 0.00 0.00 34.11 3.14
278 279 6.011122 AGTTCTCCATCCAGAAATAAGCAT 57.989 37.500 0.00 0.00 34.11 3.79
279 280 5.190528 AGAGTTCTCCATCCAGAAATAAGCA 59.809 40.000 0.00 0.00 34.11 3.91
280 281 5.679601 AGAGTTCTCCATCCAGAAATAAGC 58.320 41.667 0.00 0.00 34.11 3.09
281 282 7.334090 TGAAGAGTTCTCCATCCAGAAATAAG 58.666 38.462 0.00 0.00 34.11 1.73
283 284 6.874278 TGAAGAGTTCTCCATCCAGAAATA 57.126 37.500 0.00 0.00 34.11 1.40
287 288 3.055530 GCTTGAAGAGTTCTCCATCCAGA 60.056 47.826 0.00 0.00 0.00 3.86
289 290 2.639347 TGCTTGAAGAGTTCTCCATCCA 59.361 45.455 0.00 0.00 0.00 3.41
290 291 3.269178 CTGCTTGAAGAGTTCTCCATCC 58.731 50.000 0.00 0.00 0.00 3.51
325 4587 6.845302 AGAACATAGTACAACAATCGACGTA 58.155 36.000 0.00 0.00 0.00 3.57
343 4605 4.248859 CTCATTCCTCACACGAAGAACAT 58.751 43.478 0.00 0.00 0.00 2.71
359 4621 5.878406 TGGAGAGATTAAGTCCCTCATTC 57.122 43.478 0.00 0.00 0.00 2.67
360 4622 6.410157 CCAATGGAGAGATTAAGTCCCTCATT 60.410 42.308 0.00 0.00 0.00 2.57
361 4623 5.072872 CCAATGGAGAGATTAAGTCCCTCAT 59.927 44.000 0.00 0.00 0.00 2.90
362 4624 4.410228 CCAATGGAGAGATTAAGTCCCTCA 59.590 45.833 0.00 0.00 0.00 3.86
363 4625 4.410555 ACCAATGGAGAGATTAAGTCCCTC 59.589 45.833 6.16 0.00 0.00 4.30
364 4626 4.375313 ACCAATGGAGAGATTAAGTCCCT 58.625 43.478 6.16 0.00 0.00 4.20
365 4627 4.410555 AGACCAATGGAGAGATTAAGTCCC 59.589 45.833 6.16 0.00 0.00 4.46
366 4628 5.129485 TGAGACCAATGGAGAGATTAAGTCC 59.871 44.000 6.16 0.00 0.00 3.85
409 4682 4.147133 GTCGAGCTTTCTCATTTGTTTTGC 59.853 41.667 0.00 0.00 39.30 3.68
454 4742 7.228308 AGCCATTTAAGATCTCTATGCACTTTC 59.772 37.037 0.00 0.00 0.00 2.62
473 4762 4.279420 GGAGACTTTGTCAAAGAGCCATTT 59.721 41.667 28.07 7.13 41.02 2.32
476 4765 2.439507 AGGAGACTTTGTCAAAGAGCCA 59.560 45.455 28.07 0.00 41.02 4.75
526 4820 1.336755 GCCGTCTGACATGGTGTTTTT 59.663 47.619 8.73 0.00 32.89 1.94
527 4821 0.951558 GCCGTCTGACATGGTGTTTT 59.048 50.000 8.73 0.00 32.89 2.43
528 4822 0.108585 AGCCGTCTGACATGGTGTTT 59.891 50.000 8.73 0.00 32.89 2.83
529 4823 0.603707 CAGCCGTCTGACATGGTGTT 60.604 55.000 8.73 0.00 42.95 3.32
530 4824 1.004560 CAGCCGTCTGACATGGTGT 60.005 57.895 8.73 0.00 42.95 4.16
531 4825 2.393768 GCAGCCGTCTGACATGGTG 61.394 63.158 17.26 17.26 42.95 4.17
532 4826 2.046892 GCAGCCGTCTGACATGGT 60.047 61.111 8.73 0.98 42.95 3.55
533 4827 2.104859 CAGCAGCCGTCTGACATGG 61.105 63.158 8.73 3.03 42.95 3.66
534 4828 1.079612 TCAGCAGCCGTCTGACATG 60.080 57.895 8.73 4.63 42.95 3.21
535 4829 3.380995 TCAGCAGCCGTCTGACAT 58.619 55.556 8.73 0.00 42.95 3.06
591 4911 1.239347 GGTGTTGTGGAGGAGCTTTC 58.761 55.000 0.00 0.00 0.00 2.62
679 5000 3.685139 AGAAGAGCCGACATTTTCTCA 57.315 42.857 0.00 0.00 0.00 3.27
710 5048 0.234625 CACGACCAACACAACATCCG 59.765 55.000 0.00 0.00 0.00 4.18
880 5296 3.179830 GGCTGTAGACTGTGTGTTATCG 58.820 50.000 0.00 0.00 0.00 2.92
884 5300 3.403038 GATTGGCTGTAGACTGTGTGTT 58.597 45.455 0.00 0.00 0.00 3.32
885 5301 2.289694 GGATTGGCTGTAGACTGTGTGT 60.290 50.000 0.00 0.00 0.00 3.72
886 5302 2.027745 AGGATTGGCTGTAGACTGTGTG 60.028 50.000 0.00 0.00 0.00 3.82
887 5303 2.260822 AGGATTGGCTGTAGACTGTGT 58.739 47.619 0.00 0.00 0.00 3.72
937 5376 4.335647 ACCAAGCAGGGCTGACCG 62.336 66.667 0.00 0.00 46.96 4.79
938 5377 2.360475 GACCAAGCAGGGCTGACC 60.360 66.667 0.00 0.00 44.70 4.02
944 5383 0.107459 GAAGGCTAGACCAAGCAGGG 60.107 60.000 0.00 0.00 44.64 4.45
1134 5595 2.594303 CTGTCTTTGCCACCGCCA 60.594 61.111 0.00 0.00 0.00 5.69
1139 5612 2.159272 GACGTCGCTGTCTTTGCCAC 62.159 60.000 0.00 0.00 35.95 5.01
1140 5613 1.954146 GACGTCGCTGTCTTTGCCA 60.954 57.895 0.00 0.00 35.95 4.92
1141 5614 1.664965 AGACGTCGCTGTCTTTGCC 60.665 57.895 10.46 0.00 46.85 4.52
1142 5615 1.488957 CAGACGTCGCTGTCTTTGC 59.511 57.895 10.46 0.00 46.85 3.68
1143 5616 1.488957 GCAGACGTCGCTGTCTTTG 59.511 57.895 20.14 8.56 46.85 2.77
1144 5617 2.016704 CGCAGACGTCGCTGTCTTT 61.017 57.895 23.08 0.00 46.85 2.52
1145 5618 2.429236 CGCAGACGTCGCTGTCTT 60.429 61.111 23.08 0.00 46.85 3.01
1147 5620 2.872001 CTCGCAGACGTCGCTGTC 60.872 66.667 23.08 9.02 41.18 3.51
1148 5621 3.354645 TCTCGCAGACGTCGCTGT 61.355 61.111 23.08 0.42 41.18 4.40
1149 5622 2.872001 GTCTCGCAGACGTCGCTG 60.872 66.667 23.08 13.83 41.18 5.18
1201 5674 2.322830 CGACGTCGTCCAGGTCTGA 61.323 63.158 29.08 0.00 37.70 3.27
1509 5982 1.556373 CCTCATCCTGGTGGCACTCA 61.556 60.000 18.45 12.61 0.00 3.41
1979 6505 6.385649 TTTTGGGAAGTAGATGACAACAAC 57.614 37.500 0.00 0.00 0.00 3.32
1991 6535 4.620589 TGTACGACCATTTTGGGAAGTA 57.379 40.909 0.00 0.00 43.37 2.24
1992 6536 3.495434 TGTACGACCATTTTGGGAAGT 57.505 42.857 0.00 0.00 43.37 3.01
2082 6632 1.336609 GCGTCCGGTCTACTTGTTCTT 60.337 52.381 0.00 0.00 0.00 2.52
2096 6646 0.234884 GAACCAAAAGTCAGCGTCCG 59.765 55.000 0.00 0.00 0.00 4.79
2140 6690 2.195922 GCCATAATTTTCAAGCTGCGG 58.804 47.619 0.00 0.00 0.00 5.69
2278 6835 4.811024 GCACATCATCTCACTCGGAAATAA 59.189 41.667 0.00 0.00 0.00 1.40
2326 6883 2.833794 TGCTTTCGTTCACAAGCTAGT 58.166 42.857 5.56 0.00 44.90 2.57
2387 6944 2.585170 CTTCCGAGTCACGAGAGCGG 62.585 65.000 14.99 14.99 45.77 5.52
2402 6959 6.127423 TGAGGCACTATACTTTCTACACTTCC 60.127 42.308 0.00 0.00 41.55 3.46
2424 6981 8.519526 ACTTTGACTGAAGTAGAAGTCTATGAG 58.480 37.037 4.62 1.02 42.72 2.90
2425 6982 8.410673 ACTTTGACTGAAGTAGAAGTCTATGA 57.589 34.615 4.62 0.00 42.72 2.15
2517 7074 2.026641 GCACATGTAATCCCTGCACAT 58.973 47.619 0.00 0.00 33.22 3.21
2519 7076 1.462616 TGCACATGTAATCCCTGCAC 58.537 50.000 0.00 0.00 32.97 4.57
2521 7078 1.406539 CCTTGCACATGTAATCCCTGC 59.593 52.381 0.00 0.00 0.00 4.85
2522 7079 3.003394 TCCTTGCACATGTAATCCCTG 57.997 47.619 0.00 0.00 0.00 4.45
2523 7080 3.737559 TTCCTTGCACATGTAATCCCT 57.262 42.857 0.00 0.00 0.00 4.20
2578 7135 1.676006 GCGTGCAAGCCCTACATATTT 59.324 47.619 14.16 0.00 0.00 1.40
2593 7150 4.112634 TCATCTAGTTATCAAGTGCGTGC 58.887 43.478 0.00 0.00 0.00 5.34
2663 7220 7.312154 TCATCAGTCGGTCCATTTTAATTTTG 58.688 34.615 0.00 0.00 0.00 2.44
2684 7241 9.807649 AAATAATTTTGCAGTCACCTAATCATC 57.192 29.630 0.00 0.00 0.00 2.92
2692 7249 5.304778 ACCCAAAATAATTTTGCAGTCACC 58.695 37.500 0.00 0.00 46.58 4.02
2711 7268 4.441356 GCAAATGAAAAAGTGTCTGACCCA 60.441 41.667 5.17 0.00 0.00 4.51
2779 7336 8.962679 TGAACTACAATTTTGGTTAGTCAACTT 58.037 29.630 0.00 0.00 34.88 2.66
2780 7337 8.514330 TGAACTACAATTTTGGTTAGTCAACT 57.486 30.769 0.00 0.00 34.88 3.16
2781 7338 9.744468 ATTGAACTACAATTTTGGTTAGTCAAC 57.256 29.630 0.00 0.00 45.60 3.18
2796 7353 4.868171 CGAGGGAAATCGATTGAACTACAA 59.132 41.667 12.25 0.00 45.56 2.41
2797 7354 4.430007 CGAGGGAAATCGATTGAACTACA 58.570 43.478 12.25 0.00 45.56 2.74
2798 7355 3.802685 CCGAGGGAAATCGATTGAACTAC 59.197 47.826 12.25 0.00 45.56 2.73
2799 7356 3.702548 TCCGAGGGAAATCGATTGAACTA 59.297 43.478 12.25 0.00 45.56 2.24
2800 7357 2.500098 TCCGAGGGAAATCGATTGAACT 59.500 45.455 12.25 9.73 45.56 3.01
2801 7358 2.901249 TCCGAGGGAAATCGATTGAAC 58.099 47.619 12.25 6.56 45.56 3.18
2802 7359 3.838244 ATCCGAGGGAAATCGATTGAA 57.162 42.857 12.25 0.00 45.56 2.69
2803 7360 3.306088 GCTATCCGAGGGAAATCGATTGA 60.306 47.826 12.25 2.91 45.56 2.57
2804 7361 2.996621 GCTATCCGAGGGAAATCGATTG 59.003 50.000 12.25 0.00 45.56 2.67
2805 7362 2.028020 GGCTATCCGAGGGAAATCGATT 60.028 50.000 4.39 4.39 45.56 3.34
2806 7363 1.550976 GGCTATCCGAGGGAAATCGAT 59.449 52.381 0.00 0.00 45.56 3.59
2807 7364 0.966920 GGCTATCCGAGGGAAATCGA 59.033 55.000 0.00 0.00 45.56 3.59
2808 7365 0.969894 AGGCTATCCGAGGGAAATCG 59.030 55.000 0.00 0.00 42.36 3.34
2809 7366 3.579151 AGTAAGGCTATCCGAGGGAAATC 59.421 47.826 0.00 0.00 34.34 2.17
2810 7367 3.579151 GAGTAAGGCTATCCGAGGGAAAT 59.421 47.826 0.00 0.00 34.34 2.17
2811 7368 2.963782 GAGTAAGGCTATCCGAGGGAAA 59.036 50.000 0.00 0.00 34.34 3.13
2812 7369 2.091499 TGAGTAAGGCTATCCGAGGGAA 60.091 50.000 0.00 0.00 34.34 3.97
2813 7370 1.497716 TGAGTAAGGCTATCCGAGGGA 59.502 52.381 0.00 0.00 37.47 4.20
2814 7371 1.996798 TGAGTAAGGCTATCCGAGGG 58.003 55.000 0.00 0.00 37.47 4.30
2815 7372 2.288518 GCTTGAGTAAGGCTATCCGAGG 60.289 54.545 0.00 0.00 37.47 4.63
2816 7373 2.362397 TGCTTGAGTAAGGCTATCCGAG 59.638 50.000 0.00 0.00 37.47 4.63
2817 7374 2.384828 TGCTTGAGTAAGGCTATCCGA 58.615 47.619 0.00 0.00 37.47 4.55
2818 7375 2.890808 TGCTTGAGTAAGGCTATCCG 57.109 50.000 0.00 0.00 37.47 4.18
2819 7376 5.590259 TCAAAATGCTTGAGTAAGGCTATCC 59.410 40.000 0.00 0.00 34.40 2.59
2820 7377 6.683974 TCAAAATGCTTGAGTAAGGCTATC 57.316 37.500 0.00 0.00 34.40 2.08
2821 7378 7.340232 TGAATCAAAATGCTTGAGTAAGGCTAT 59.660 33.333 0.00 0.00 34.40 2.97
2822 7379 6.658816 TGAATCAAAATGCTTGAGTAAGGCTA 59.341 34.615 0.00 0.00 34.40 3.93
2823 7380 5.477984 TGAATCAAAATGCTTGAGTAAGGCT 59.522 36.000 0.00 0.00 34.40 4.58
2824 7381 5.713025 TGAATCAAAATGCTTGAGTAAGGC 58.287 37.500 0.00 0.00 34.40 4.35
2825 7382 6.917533 ACTGAATCAAAATGCTTGAGTAAGG 58.082 36.000 4.57 0.00 31.17 2.69
2826 7383 6.740002 CGACTGAATCAAAATGCTTGAGTAAG 59.260 38.462 0.00 0.00 32.70 2.34
2827 7384 6.348458 CCGACTGAATCAAAATGCTTGAGTAA 60.348 38.462 0.00 0.00 0.00 2.24
2828 7385 5.122239 CCGACTGAATCAAAATGCTTGAGTA 59.878 40.000 0.00 0.00 0.00 2.59
2829 7386 4.083110 CCGACTGAATCAAAATGCTTGAGT 60.083 41.667 0.00 0.00 0.00 3.41
2830 7387 4.409570 CCGACTGAATCAAAATGCTTGAG 58.590 43.478 0.00 0.00 0.00 3.02
2831 7388 3.366273 GCCGACTGAATCAAAATGCTTGA 60.366 43.478 0.00 0.00 0.00 3.02
2832 7389 2.919229 GCCGACTGAATCAAAATGCTTG 59.081 45.455 0.00 0.00 0.00 4.01
2833 7390 2.414559 CGCCGACTGAATCAAAATGCTT 60.415 45.455 0.00 0.00 0.00 3.91
2834 7391 1.131126 CGCCGACTGAATCAAAATGCT 59.869 47.619 0.00 0.00 0.00 3.79
2835 7392 1.135689 ACGCCGACTGAATCAAAATGC 60.136 47.619 0.00 0.00 0.00 3.56
2836 7393 2.508867 CACGCCGACTGAATCAAAATG 58.491 47.619 0.00 0.00 0.00 2.32
2837 7394 1.468520 CCACGCCGACTGAATCAAAAT 59.531 47.619 0.00 0.00 0.00 1.82
2838 7395 0.871722 CCACGCCGACTGAATCAAAA 59.128 50.000 0.00 0.00 0.00 2.44
2839 7396 0.250124 ACCACGCCGACTGAATCAAA 60.250 50.000 0.00 0.00 0.00 2.69
2840 7397 0.948623 CACCACGCCGACTGAATCAA 60.949 55.000 0.00 0.00 0.00 2.57
2841 7398 1.374125 CACCACGCCGACTGAATCA 60.374 57.895 0.00 0.00 0.00 2.57
2842 7399 2.740714 GCACCACGCCGACTGAATC 61.741 63.158 0.00 0.00 32.94 2.52
2843 7400 2.742372 GCACCACGCCGACTGAAT 60.742 61.111 0.00 0.00 32.94 2.57
2852 7409 4.794648 TATGGGCTGGCACCACGC 62.795 66.667 2.88 0.00 41.58 5.34
2853 7410 2.514592 CTATGGGCTGGCACCACG 60.515 66.667 2.88 0.00 41.58 4.94
2854 7411 2.830370 GCTATGGGCTGGCACCAC 60.830 66.667 2.88 0.00 41.58 4.16
2855 7412 2.227494 ATTGCTATGGGCTGGCACCA 62.227 55.000 2.88 0.00 41.58 4.17
2856 7413 0.178992 TATTGCTATGGGCTGGCACC 60.179 55.000 2.88 0.00 41.58 5.01
2857 7414 1.242076 CTATTGCTATGGGCTGGCAC 58.758 55.000 2.88 0.00 41.58 5.01
2858 7415 0.538057 GCTATTGCTATGGGCTGGCA 60.538 55.000 2.88 0.00 39.94 4.92
2859 7416 1.246737 GGCTATTGCTATGGGCTGGC 61.247 60.000 10.42 0.00 42.39 4.85
2860 7417 0.403271 AGGCTATTGCTATGGGCTGG 59.597 55.000 18.25 0.00 44.72 4.85
2861 7418 2.568956 TCTAGGCTATTGCTATGGGCTG 59.431 50.000 25.24 16.68 45.70 4.85
2863 7420 3.604582 CTTCTAGGCTATTGCTATGGGC 58.395 50.000 9.76 9.76 39.59 5.36


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.