Multiple sequence alignment - TraesCS5A01G220800

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G220800 chr5A 100.000 2705 0 0 1 2705 437204486 437207190 0.000000e+00 4996.0
1 TraesCS5A01G220800 chr5A 89.474 133 14 0 36 168 433309882 433309750 4.630000e-38 169.0
2 TraesCS5A01G220800 chr5D 90.490 1388 83 11 313 1663 336045873 336047248 0.000000e+00 1786.0
3 TraesCS5A01G220800 chr5D 92.568 592 34 7 1577 2160 336047246 336047835 0.000000e+00 841.0
4 TraesCS5A01G220800 chr5D 88.127 379 30 4 2328 2705 336047976 336048340 1.150000e-118 436.0
5 TraesCS5A01G220800 chr5D 89.474 133 13 1 36 168 488168745 488168876 1.670000e-37 167.0
6 TraesCS5A01G220800 chr5D 94.681 94 5 0 2225 2318 336047835 336047928 2.170000e-31 147.0
7 TraesCS5A01G220800 chr5D 79.508 122 25 0 1553 1674 336047186 336047307 1.330000e-13 87.9
8 TraesCS5A01G220800 chr5D 81.633 98 18 0 1559 1656 336047180 336047277 6.210000e-12 82.4
9 TraesCS5A01G220800 chr5D 100.000 44 0 0 2659 2702 464070948 464070905 6.210000e-12 82.4
10 TraesCS5A01G220800 chr5B 89.134 1178 94 6 497 1644 393996175 393997348 0.000000e+00 1435.0
11 TraesCS5A01G220800 chr5B 90.708 452 40 2 1580 2030 393997355 393997805 3.850000e-168 601.0
12 TraesCS5A01G220800 chr5B 83.836 464 38 20 2242 2704 394001510 394001937 9.020000e-110 407.0
13 TraesCS5A01G220800 chr5B 93.077 130 9 0 2029 2158 394001385 394001514 9.890000e-45 191.0
14 TraesCS5A01G220800 chr5B 100.000 28 0 0 393 420 393996018 393996045 5.000000e-03 52.8
15 TraesCS5A01G220800 chr6A 94.048 168 10 0 1 168 453126820 453126653 3.460000e-64 255.0
16 TraesCS5A01G220800 chr6B 92.727 165 12 0 4 168 484658990 484658826 3.480000e-59 239.0
17 TraesCS5A01G220800 chr6B 90.977 133 11 1 36 168 698335388 698335257 7.700000e-41 178.0
18 TraesCS5A01G220800 chr6B 90.265 113 10 1 190 302 717139170 717139059 2.170000e-31 147.0
19 TraesCS5A01G220800 chr6B 90.000 110 11 0 190 299 632892552 632892661 2.810000e-30 143.0
20 TraesCS5A01G220800 chr2B 93.252 163 10 1 4 166 239629845 239629684 3.480000e-59 239.0
21 TraesCS5A01G220800 chr2B 91.667 168 14 0 1 168 697570741 697570908 1.620000e-57 233.0
22 TraesCS5A01G220800 chr2B 97.959 49 1 0 2657 2705 775028723 775028675 4.800000e-13 86.1
23 TraesCS5A01G220800 chr7A 90.476 168 12 2 1 168 14933971 14933808 4.530000e-53 219.0
24 TraesCS5A01G220800 chr1D 89.552 134 11 3 36 168 18869328 18869197 1.670000e-37 167.0
25 TraesCS5A01G220800 chr1D 95.918 49 2 0 2651 2699 279101468 279101420 2.230000e-11 80.5
26 TraesCS5A01G220800 chr1A 90.265 113 10 1 190 302 2826133 2826022 2.170000e-31 147.0
27 TraesCS5A01G220800 chr1A 89.381 113 11 1 190 302 2839962 2839851 1.010000e-29 141.0
28 TraesCS5A01G220800 chr1A 100.000 44 0 0 2659 2702 561751113 561751070 6.210000e-12 82.4
29 TraesCS5A01G220800 chr6D 90.654 107 9 1 196 302 472426255 472426150 1.010000e-29 141.0
30 TraesCS5A01G220800 chr6D 88.182 110 13 0 190 299 5560151 5560042 6.080000e-27 132.0
31 TraesCS5A01G220800 chr4D 88.235 119 10 4 190 307 417812745 417812860 3.630000e-29 139.0
32 TraesCS5A01G220800 chr3B 89.286 112 10 2 196 307 748466816 748466707 3.630000e-29 139.0
33 TraesCS5A01G220800 chrUn 87.069 116 13 1 192 307 358445950 358446063 2.190000e-26 130.0
34 TraesCS5A01G220800 chrUn 100.000 44 0 0 2659 2702 313622429 313622386 6.210000e-12 82.4
35 TraesCS5A01G220800 chr2D 81.884 138 18 6 49 184 555904370 555904238 2.850000e-20 110.0
36 TraesCS5A01G220800 chr7B 92.593 54 2 2 2649 2702 490685090 490685141 2.890000e-10 76.8
37 TraesCS5A01G220800 chr7B 91.228 57 1 4 2644 2698 450642101 450642155 1.040000e-09 75.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G220800 chr5A 437204486 437207190 2704 False 4996.000000 4996 100.0000 1 2705 1 chr5A.!!$F1 2704
1 TraesCS5A01G220800 chr5D 336045873 336048340 2467 False 563.383333 1786 87.8345 313 2705 6 chr5D.!!$F2 2392
2 TraesCS5A01G220800 chr5B 393996018 394001937 5919 False 537.360000 1435 91.3510 393 2704 5 chr5B.!!$F1 2311

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
42 43 0.041576 GGTCGGCGTGTGTTTCTTTC 60.042 55.0 6.85 0.00 0.0 2.62 F
193 194 0.179084 TTGATCTTTAGGGAGCGGCG 60.179 55.0 0.51 0.51 0.0 6.46 F
235 236 0.313043 GTCGTTCGGTGGTCTCAGAA 59.687 55.0 0.00 0.00 0.0 3.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1656 1912 0.250234 CGGAACCTGCTTCTGATCCA 59.750 55.0 0.0 0.0 37.44 3.41 R
1657 1913 0.537188 TCGGAACCTGCTTCTGATCC 59.463 55.0 0.0 0.0 39.07 3.36 R
2160 6005 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.0 0.0 0.0 0.00 3.82 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
34 35 4.143333 CCCTAGGGTCGGCGTGTG 62.143 72.222 20.88 0.00 0.00 3.82
35 36 3.379445 CCTAGGGTCGGCGTGTGT 61.379 66.667 6.85 0.00 0.00 3.72
36 37 2.654877 CTAGGGTCGGCGTGTGTT 59.345 61.111 6.85 0.00 0.00 3.32
37 38 1.005394 CTAGGGTCGGCGTGTGTTT 60.005 57.895 6.85 0.00 0.00 2.83
38 39 1.005867 TAGGGTCGGCGTGTGTTTC 60.006 57.895 6.85 0.00 0.00 2.78
39 40 1.466025 TAGGGTCGGCGTGTGTTTCT 61.466 55.000 6.85 0.00 0.00 2.52
40 41 1.890510 GGGTCGGCGTGTGTTTCTT 60.891 57.895 6.85 0.00 0.00 2.52
41 42 1.441732 GGGTCGGCGTGTGTTTCTTT 61.442 55.000 6.85 0.00 0.00 2.52
42 43 0.041576 GGTCGGCGTGTGTTTCTTTC 60.042 55.000 6.85 0.00 0.00 2.62
43 44 0.653636 GTCGGCGTGTGTTTCTTTCA 59.346 50.000 6.85 0.00 0.00 2.69
44 45 0.934496 TCGGCGTGTGTTTCTTTCAG 59.066 50.000 6.85 0.00 0.00 3.02
45 46 0.655733 CGGCGTGTGTTTCTTTCAGT 59.344 50.000 0.00 0.00 0.00 3.41
46 47 1.063469 CGGCGTGTGTTTCTTTCAGTT 59.937 47.619 0.00 0.00 0.00 3.16
47 48 2.285756 CGGCGTGTGTTTCTTTCAGTTA 59.714 45.455 0.00 0.00 0.00 2.24
48 49 3.059188 CGGCGTGTGTTTCTTTCAGTTAT 60.059 43.478 0.00 0.00 0.00 1.89
49 50 4.464112 GGCGTGTGTTTCTTTCAGTTATC 58.536 43.478 0.00 0.00 0.00 1.75
50 51 4.464112 GCGTGTGTTTCTTTCAGTTATCC 58.536 43.478 0.00 0.00 0.00 2.59
51 52 4.612939 GCGTGTGTTTCTTTCAGTTATCCC 60.613 45.833 0.00 0.00 0.00 3.85
52 53 4.755123 CGTGTGTTTCTTTCAGTTATCCCT 59.245 41.667 0.00 0.00 0.00 4.20
53 54 5.334105 CGTGTGTTTCTTTCAGTTATCCCTG 60.334 44.000 0.00 0.00 0.00 4.45
54 55 5.763204 GTGTGTTTCTTTCAGTTATCCCTGA 59.237 40.000 0.00 0.00 39.65 3.86
55 56 6.431234 GTGTGTTTCTTTCAGTTATCCCTGAT 59.569 38.462 0.00 0.00 40.96 2.90
56 57 7.004086 TGTGTTTCTTTCAGTTATCCCTGATT 58.996 34.615 0.00 0.00 40.96 2.57
57 58 8.160765 TGTGTTTCTTTCAGTTATCCCTGATTA 58.839 33.333 0.00 0.00 40.96 1.75
58 59 8.669243 GTGTTTCTTTCAGTTATCCCTGATTAG 58.331 37.037 0.00 0.00 40.96 1.73
59 60 7.336931 TGTTTCTTTCAGTTATCCCTGATTAGC 59.663 37.037 0.00 0.00 40.96 3.09
60 61 5.930135 TCTTTCAGTTATCCCTGATTAGCC 58.070 41.667 0.00 0.00 40.96 3.93
61 62 4.336889 TTCAGTTATCCCTGATTAGCCG 57.663 45.455 0.00 0.00 40.96 5.52
62 63 3.305720 TCAGTTATCCCTGATTAGCCGT 58.694 45.455 0.00 0.00 36.57 5.68
63 64 3.069586 TCAGTTATCCCTGATTAGCCGTG 59.930 47.826 0.00 0.00 36.57 4.94
64 65 3.069586 CAGTTATCCCTGATTAGCCGTGA 59.930 47.826 0.00 0.00 34.23 4.35
65 66 3.709653 AGTTATCCCTGATTAGCCGTGAA 59.290 43.478 0.00 0.00 0.00 3.18
66 67 4.348168 AGTTATCCCTGATTAGCCGTGAAT 59.652 41.667 0.00 0.00 0.00 2.57
67 68 2.620251 TCCCTGATTAGCCGTGAATG 57.380 50.000 0.00 0.00 0.00 2.67
68 69 1.837439 TCCCTGATTAGCCGTGAATGT 59.163 47.619 0.00 0.00 0.00 2.71
69 70 2.238646 TCCCTGATTAGCCGTGAATGTT 59.761 45.455 0.00 0.00 0.00 2.71
70 71 3.452990 TCCCTGATTAGCCGTGAATGTTA 59.547 43.478 0.00 0.00 0.00 2.41
71 72 3.809832 CCCTGATTAGCCGTGAATGTTAG 59.190 47.826 0.00 0.00 0.00 2.34
72 73 3.809832 CCTGATTAGCCGTGAATGTTAGG 59.190 47.826 0.00 0.00 0.00 2.69
73 74 4.442706 CTGATTAGCCGTGAATGTTAGGT 58.557 43.478 0.00 0.00 0.00 3.08
74 75 4.839121 TGATTAGCCGTGAATGTTAGGTT 58.161 39.130 0.00 0.00 0.00 3.50
75 76 5.250200 TGATTAGCCGTGAATGTTAGGTTT 58.750 37.500 0.00 0.00 0.00 3.27
76 77 5.708230 TGATTAGCCGTGAATGTTAGGTTTT 59.292 36.000 0.00 0.00 0.00 2.43
77 78 5.616488 TTAGCCGTGAATGTTAGGTTTTC 57.384 39.130 0.00 0.00 0.00 2.29
78 79 2.482721 AGCCGTGAATGTTAGGTTTTCG 59.517 45.455 0.00 0.00 0.00 3.46
79 80 2.413634 GCCGTGAATGTTAGGTTTTCGG 60.414 50.000 0.00 0.00 38.67 4.30
80 81 2.160813 CCGTGAATGTTAGGTTTTCGGG 59.839 50.000 0.00 0.00 33.20 5.14
81 82 2.809696 CGTGAATGTTAGGTTTTCGGGT 59.190 45.455 0.00 0.00 0.00 5.28
82 83 3.251487 CGTGAATGTTAGGTTTTCGGGTT 59.749 43.478 0.00 0.00 0.00 4.11
83 84 4.261280 CGTGAATGTTAGGTTTTCGGGTTT 60.261 41.667 0.00 0.00 0.00 3.27
84 85 4.979815 GTGAATGTTAGGTTTTCGGGTTTG 59.020 41.667 0.00 0.00 0.00 2.93
85 86 4.038162 TGAATGTTAGGTTTTCGGGTTTGG 59.962 41.667 0.00 0.00 0.00 3.28
86 87 3.015675 TGTTAGGTTTTCGGGTTTGGT 57.984 42.857 0.00 0.00 0.00 3.67
87 88 3.363627 TGTTAGGTTTTCGGGTTTGGTT 58.636 40.909 0.00 0.00 0.00 3.67
88 89 3.768215 TGTTAGGTTTTCGGGTTTGGTTT 59.232 39.130 0.00 0.00 0.00 3.27
89 90 4.222366 TGTTAGGTTTTCGGGTTTGGTTTT 59.778 37.500 0.00 0.00 0.00 2.43
90 91 3.985019 AGGTTTTCGGGTTTGGTTTTT 57.015 38.095 0.00 0.00 0.00 1.94
91 92 3.864243 AGGTTTTCGGGTTTGGTTTTTC 58.136 40.909 0.00 0.00 0.00 2.29
92 93 3.516300 AGGTTTTCGGGTTTGGTTTTTCT 59.484 39.130 0.00 0.00 0.00 2.52
93 94 4.020039 AGGTTTTCGGGTTTGGTTTTTCTT 60.020 37.500 0.00 0.00 0.00 2.52
94 95 5.187381 AGGTTTTCGGGTTTGGTTTTTCTTA 59.813 36.000 0.00 0.00 0.00 2.10
95 96 6.050432 GGTTTTCGGGTTTGGTTTTTCTTAT 58.950 36.000 0.00 0.00 0.00 1.73
96 97 7.069702 AGGTTTTCGGGTTTGGTTTTTCTTATA 59.930 33.333 0.00 0.00 0.00 0.98
97 98 7.710044 GGTTTTCGGGTTTGGTTTTTCTTATAA 59.290 33.333 0.00 0.00 0.00 0.98
98 99 9.096160 GTTTTCGGGTTTGGTTTTTCTTATAAA 57.904 29.630 0.00 0.00 0.00 1.40
99 100 8.645730 TTTCGGGTTTGGTTTTTCTTATAAAC 57.354 30.769 0.00 0.00 35.31 2.01
100 101 7.585579 TCGGGTTTGGTTTTTCTTATAAACT 57.414 32.000 0.00 0.00 36.12 2.66
101 102 8.688747 TCGGGTTTGGTTTTTCTTATAAACTA 57.311 30.769 0.00 0.00 36.12 2.24
102 103 8.785946 TCGGGTTTGGTTTTTCTTATAAACTAG 58.214 33.333 0.00 0.00 36.12 2.57
103 104 8.785946 CGGGTTTGGTTTTTCTTATAAACTAGA 58.214 33.333 0.00 0.00 36.12 2.43
104 105 9.903682 GGGTTTGGTTTTTCTTATAAACTAGAC 57.096 33.333 0.00 0.00 36.12 2.59
105 106 9.903682 GGTTTGGTTTTTCTTATAAACTAGACC 57.096 33.333 0.00 8.15 40.95 3.85
109 110 9.856162 TGGTTTTTCTTATAAACTAGACCAACT 57.144 29.630 0.00 0.00 36.12 3.16
116 117 9.756571 TCTTATAAACTAGACCAACTCTCTTCT 57.243 33.333 0.00 0.00 0.00 2.85
119 120 6.987403 AAACTAGACCAACTCTCTTCTTCT 57.013 37.500 0.00 0.00 0.00 2.85
120 121 6.987403 AACTAGACCAACTCTCTTCTTCTT 57.013 37.500 0.00 0.00 0.00 2.52
121 122 8.480133 AAACTAGACCAACTCTCTTCTTCTTA 57.520 34.615 0.00 0.00 0.00 2.10
122 123 8.480133 AACTAGACCAACTCTCTTCTTCTTAA 57.520 34.615 0.00 0.00 0.00 1.85
123 124 8.658840 ACTAGACCAACTCTCTTCTTCTTAAT 57.341 34.615 0.00 0.00 0.00 1.40
124 125 8.527810 ACTAGACCAACTCTCTTCTTCTTAATG 58.472 37.037 0.00 0.00 0.00 1.90
125 126 7.546250 AGACCAACTCTCTTCTTCTTAATGA 57.454 36.000 0.00 0.00 0.00 2.57
126 127 7.967908 AGACCAACTCTCTTCTTCTTAATGAA 58.032 34.615 0.00 0.00 0.00 2.57
127 128 8.432805 AGACCAACTCTCTTCTTCTTAATGAAA 58.567 33.333 0.00 0.00 33.79 2.69
128 129 9.225436 GACCAACTCTCTTCTTCTTAATGAAAT 57.775 33.333 0.00 0.00 33.79 2.17
129 130 9.007901 ACCAACTCTCTTCTTCTTAATGAAATG 57.992 33.333 0.00 0.00 33.79 2.32
130 131 7.967303 CCAACTCTCTTCTTCTTAATGAAATGC 59.033 37.037 0.00 0.00 33.79 3.56
131 132 8.509690 CAACTCTCTTCTTCTTAATGAAATGCA 58.490 33.333 0.00 0.00 33.79 3.96
132 133 8.627208 ACTCTCTTCTTCTTAATGAAATGCAA 57.373 30.769 0.00 0.00 33.79 4.08
133 134 8.728833 ACTCTCTTCTTCTTAATGAAATGCAAG 58.271 33.333 0.00 0.00 33.79 4.01
134 135 8.853077 TCTCTTCTTCTTAATGAAATGCAAGA 57.147 30.769 0.00 0.00 33.79 3.02
135 136 9.288576 TCTCTTCTTCTTAATGAAATGCAAGAA 57.711 29.630 0.00 0.00 36.44 2.52
136 137 9.339492 CTCTTCTTCTTAATGAAATGCAAGAAC 57.661 33.333 0.00 0.00 34.89 3.01
137 138 8.299570 TCTTCTTCTTAATGAAATGCAAGAACC 58.700 33.333 0.00 0.00 34.89 3.62
138 139 6.924111 TCTTCTTAATGAAATGCAAGAACCC 58.076 36.000 0.00 0.00 34.89 4.11
139 140 5.659440 TCTTAATGAAATGCAAGAACCCC 57.341 39.130 0.00 0.00 28.61 4.95
140 141 4.466015 TCTTAATGAAATGCAAGAACCCCC 59.534 41.667 0.00 0.00 28.61 5.40
141 142 2.629017 ATGAAATGCAAGAACCCCCT 57.371 45.000 0.00 0.00 0.00 4.79
142 143 1.631405 TGAAATGCAAGAACCCCCTG 58.369 50.000 0.00 0.00 0.00 4.45
143 144 0.247460 GAAATGCAAGAACCCCCTGC 59.753 55.000 0.00 0.00 0.00 4.85
144 145 1.194121 AAATGCAAGAACCCCCTGCC 61.194 55.000 0.00 0.00 0.00 4.85
145 146 3.607084 ATGCAAGAACCCCCTGCCC 62.607 63.158 0.00 0.00 0.00 5.36
147 148 3.268032 CAAGAACCCCCTGCCCCT 61.268 66.667 0.00 0.00 0.00 4.79
148 149 2.454511 AAGAACCCCCTGCCCCTT 60.455 61.111 0.00 0.00 0.00 3.95
149 150 2.097727 AAGAACCCCCTGCCCCTTT 61.098 57.895 0.00 0.00 0.00 3.11
150 151 1.674931 AAGAACCCCCTGCCCCTTTT 61.675 55.000 0.00 0.00 0.00 2.27
151 152 1.913262 GAACCCCCTGCCCCTTTTG 60.913 63.158 0.00 0.00 0.00 2.44
152 153 2.380571 GAACCCCCTGCCCCTTTTGA 62.381 60.000 0.00 0.00 0.00 2.69
153 154 2.037847 CCCCCTGCCCCTTTTGAG 59.962 66.667 0.00 0.00 0.00 3.02
154 155 2.037847 CCCCTGCCCCTTTTGAGG 59.962 66.667 0.00 0.00 0.00 3.86
155 156 2.854076 CCCTGCCCCTTTTGAGGT 59.146 61.111 0.00 0.00 0.00 3.85
156 157 1.607467 CCCTGCCCCTTTTGAGGTG 60.607 63.158 0.00 0.00 0.00 4.00
157 158 1.153756 CCTGCCCCTTTTGAGGTGT 59.846 57.895 0.00 0.00 0.00 4.16
158 159 0.469892 CCTGCCCCTTTTGAGGTGTT 60.470 55.000 0.00 0.00 0.00 3.32
159 160 0.961753 CTGCCCCTTTTGAGGTGTTC 59.038 55.000 0.00 0.00 0.00 3.18
160 161 0.555769 TGCCCCTTTTGAGGTGTTCT 59.444 50.000 0.00 0.00 0.00 3.01
161 162 1.248486 GCCCCTTTTGAGGTGTTCTC 58.752 55.000 0.00 0.00 42.74 2.87
162 163 1.523758 CCCCTTTTGAGGTGTTCTCG 58.476 55.000 0.00 0.00 45.32 4.04
163 164 1.071699 CCCCTTTTGAGGTGTTCTCGA 59.928 52.381 0.00 0.00 45.32 4.04
164 165 2.486548 CCCCTTTTGAGGTGTTCTCGAA 60.487 50.000 0.00 0.00 45.32 3.71
171 172 6.633500 TTTGAGGTGTTCTCGAAAAATGAT 57.367 33.333 0.00 0.00 45.32 2.45
172 173 5.862924 TGAGGTGTTCTCGAAAAATGATC 57.137 39.130 0.00 0.00 45.32 2.92
173 174 4.388773 TGAGGTGTTCTCGAAAAATGATCG 59.611 41.667 0.00 0.00 45.32 3.69
174 175 4.315803 AGGTGTTCTCGAAAAATGATCGT 58.684 39.130 0.00 0.00 40.99 3.73
175 176 4.755123 AGGTGTTCTCGAAAAATGATCGTT 59.245 37.500 0.00 0.00 40.99 3.85
176 177 4.846137 GGTGTTCTCGAAAAATGATCGTTG 59.154 41.667 0.00 0.00 40.99 4.10
177 178 5.333798 GGTGTTCTCGAAAAATGATCGTTGA 60.334 40.000 0.00 0.00 40.99 3.18
178 179 6.307155 GTGTTCTCGAAAAATGATCGTTGAT 58.693 36.000 0.00 0.00 40.99 2.57
179 180 6.462949 GTGTTCTCGAAAAATGATCGTTGATC 59.537 38.462 0.00 2.26 40.99 2.92
180 181 6.368791 TGTTCTCGAAAAATGATCGTTGATCT 59.631 34.615 0.00 0.00 39.56 2.75
181 182 6.968131 TCTCGAAAAATGATCGTTGATCTT 57.032 33.333 0.00 0.00 39.56 2.40
182 183 7.364522 TCTCGAAAAATGATCGTTGATCTTT 57.635 32.000 0.00 5.45 39.56 2.52
183 184 8.474006 TCTCGAAAAATGATCGTTGATCTTTA 57.526 30.769 0.00 0.00 39.56 1.85
184 185 8.595533 TCTCGAAAAATGATCGTTGATCTTTAG 58.404 33.333 0.00 0.00 39.56 1.85
185 186 7.684670 TCGAAAAATGATCGTTGATCTTTAGG 58.315 34.615 0.00 0.00 39.56 2.69
186 187 6.907212 CGAAAAATGATCGTTGATCTTTAGGG 59.093 38.462 0.00 0.00 39.56 3.53
187 188 7.201609 CGAAAAATGATCGTTGATCTTTAGGGA 60.202 37.037 0.00 0.00 39.56 4.20
188 189 7.559590 AAAATGATCGTTGATCTTTAGGGAG 57.440 36.000 0.00 0.00 39.56 4.30
189 190 4.060038 TGATCGTTGATCTTTAGGGAGC 57.940 45.455 8.16 0.00 39.56 4.70
190 191 2.579207 TCGTTGATCTTTAGGGAGCG 57.421 50.000 0.00 0.00 0.00 5.03
191 192 1.136305 TCGTTGATCTTTAGGGAGCGG 59.864 52.381 0.00 0.00 0.00 5.52
192 193 1.300481 GTTGATCTTTAGGGAGCGGC 58.700 55.000 0.00 0.00 0.00 6.53
193 194 0.179084 TTGATCTTTAGGGAGCGGCG 60.179 55.000 0.51 0.51 0.00 6.46
194 195 1.040893 TGATCTTTAGGGAGCGGCGA 61.041 55.000 12.98 0.00 0.00 5.54
195 196 0.597898 GATCTTTAGGGAGCGGCGAC 60.598 60.000 12.98 3.05 0.00 5.19
196 197 1.043673 ATCTTTAGGGAGCGGCGACT 61.044 55.000 12.98 7.43 0.00 4.18
197 198 1.227002 CTTTAGGGAGCGGCGACTC 60.227 63.158 12.98 16.72 35.86 3.36
198 199 2.938539 CTTTAGGGAGCGGCGACTCG 62.939 65.000 12.98 0.00 37.57 4.18
199 200 4.790962 TAGGGAGCGGCGACTCGT 62.791 66.667 12.98 10.11 37.57 4.18
201 202 4.736896 GGGAGCGGCGACTCGTTT 62.737 66.667 12.98 0.00 37.57 3.60
202 203 2.737376 GGAGCGGCGACTCGTTTT 60.737 61.111 12.98 0.00 37.57 2.43
203 204 2.470286 GAGCGGCGACTCGTTTTG 59.530 61.111 12.98 0.00 0.00 2.44
204 205 2.019951 GAGCGGCGACTCGTTTTGA 61.020 57.895 12.98 0.00 0.00 2.69
205 206 2.170273 GCGGCGACTCGTTTTGAC 59.830 61.111 12.98 0.00 0.00 3.18
206 207 2.464189 CGGCGACTCGTTTTGACG 59.536 61.111 0.00 0.00 0.00 4.35
207 208 2.012414 CGGCGACTCGTTTTGACGA 61.012 57.895 0.00 1.50 40.06 4.20
208 209 1.485943 GGCGACTCGTTTTGACGAC 59.514 57.895 0.00 0.00 37.20 4.34
209 210 1.125266 GCGACTCGTTTTGACGACG 59.875 57.895 0.00 7.35 41.62 5.12
210 211 1.264141 GCGACTCGTTTTGACGACGA 61.264 55.000 13.58 4.80 46.15 4.20
211 212 1.324718 CGACTCGTTTTGACGACGAT 58.675 50.000 0.00 0.00 46.93 3.73
212 213 2.498905 CGACTCGTTTTGACGACGATA 58.501 47.619 0.00 0.00 46.93 2.92
213 214 2.521146 CGACTCGTTTTGACGACGATAG 59.479 50.000 0.00 0.00 46.93 2.08
226 227 2.939782 CGATAGTGGTCGTTCGGTG 58.060 57.895 0.00 0.00 36.88 4.94
227 228 0.524816 CGATAGTGGTCGTTCGGTGG 60.525 60.000 0.00 0.00 36.88 4.61
228 229 0.529378 GATAGTGGTCGTTCGGTGGT 59.471 55.000 0.00 0.00 0.00 4.16
229 230 0.529378 ATAGTGGTCGTTCGGTGGTC 59.471 55.000 0.00 0.00 0.00 4.02
230 231 0.538057 TAGTGGTCGTTCGGTGGTCT 60.538 55.000 0.00 0.00 0.00 3.85
231 232 1.372623 GTGGTCGTTCGGTGGTCTC 60.373 63.158 0.00 0.00 0.00 3.36
232 233 1.829096 TGGTCGTTCGGTGGTCTCA 60.829 57.895 0.00 0.00 0.00 3.27
233 234 1.080705 GGTCGTTCGGTGGTCTCAG 60.081 63.158 0.00 0.00 0.00 3.35
234 235 1.521450 GGTCGTTCGGTGGTCTCAGA 61.521 60.000 0.00 0.00 0.00 3.27
235 236 0.313043 GTCGTTCGGTGGTCTCAGAA 59.687 55.000 0.00 0.00 0.00 3.02
236 237 1.067776 GTCGTTCGGTGGTCTCAGAAT 60.068 52.381 0.00 0.00 0.00 2.40
237 238 1.201647 TCGTTCGGTGGTCTCAGAATC 59.798 52.381 0.00 0.00 0.00 2.52
238 239 1.202582 CGTTCGGTGGTCTCAGAATCT 59.797 52.381 0.00 0.00 0.00 2.40
239 240 2.352814 CGTTCGGTGGTCTCAGAATCTT 60.353 50.000 0.00 0.00 0.00 2.40
240 241 2.996621 GTTCGGTGGTCTCAGAATCTTG 59.003 50.000 0.00 0.00 0.00 3.02
241 242 2.525368 TCGGTGGTCTCAGAATCTTGA 58.475 47.619 0.00 0.00 0.00 3.02
242 243 3.099905 TCGGTGGTCTCAGAATCTTGAT 58.900 45.455 0.00 0.00 0.00 2.57
243 244 4.278310 TCGGTGGTCTCAGAATCTTGATA 58.722 43.478 0.00 0.00 0.00 2.15
244 245 4.895889 TCGGTGGTCTCAGAATCTTGATAT 59.104 41.667 0.00 0.00 0.00 1.63
245 246 6.068670 TCGGTGGTCTCAGAATCTTGATATA 58.931 40.000 0.00 0.00 0.00 0.86
246 247 6.549736 TCGGTGGTCTCAGAATCTTGATATAA 59.450 38.462 0.00 0.00 0.00 0.98
247 248 7.233553 TCGGTGGTCTCAGAATCTTGATATAAT 59.766 37.037 0.00 0.00 0.00 1.28
248 249 7.875041 CGGTGGTCTCAGAATCTTGATATAATT 59.125 37.037 0.00 0.00 0.00 1.40
249 250 9.566432 GGTGGTCTCAGAATCTTGATATAATTT 57.434 33.333 0.00 0.00 0.00 1.82
272 273 9.777297 ATTTTTATTATGTTTGAGGTGCTTTGT 57.223 25.926 0.00 0.00 0.00 2.83
274 275 9.685828 TTTTATTATGTTTGAGGTGCTTTGTAC 57.314 29.630 0.00 0.00 0.00 2.90
275 276 8.630054 TTATTATGTTTGAGGTGCTTTGTACT 57.370 30.769 0.00 0.00 0.00 2.73
276 277 6.952773 TTATGTTTGAGGTGCTTTGTACTT 57.047 33.333 0.00 0.00 0.00 2.24
277 278 5.852282 ATGTTTGAGGTGCTTTGTACTTT 57.148 34.783 0.00 0.00 0.00 2.66
278 279 5.243426 TGTTTGAGGTGCTTTGTACTTTC 57.757 39.130 0.00 0.00 0.00 2.62
279 280 4.947388 TGTTTGAGGTGCTTTGTACTTTCT 59.053 37.500 0.00 0.00 0.00 2.52
280 281 5.163663 TGTTTGAGGTGCTTTGTACTTTCTG 60.164 40.000 0.00 0.00 0.00 3.02
281 282 4.150897 TGAGGTGCTTTGTACTTTCTGT 57.849 40.909 0.00 0.00 0.00 3.41
282 283 3.876914 TGAGGTGCTTTGTACTTTCTGTG 59.123 43.478 0.00 0.00 0.00 3.66
283 284 4.127171 GAGGTGCTTTGTACTTTCTGTGA 58.873 43.478 0.00 0.00 0.00 3.58
284 285 4.523083 AGGTGCTTTGTACTTTCTGTGAA 58.477 39.130 0.00 0.00 0.00 3.18
285 286 5.133221 AGGTGCTTTGTACTTTCTGTGAAT 58.867 37.500 0.00 0.00 0.00 2.57
286 287 5.594317 AGGTGCTTTGTACTTTCTGTGAATT 59.406 36.000 0.00 0.00 0.00 2.17
287 288 6.096846 AGGTGCTTTGTACTTTCTGTGAATTT 59.903 34.615 0.00 0.00 0.00 1.82
288 289 6.756542 GGTGCTTTGTACTTTCTGTGAATTTT 59.243 34.615 0.00 0.00 0.00 1.82
289 290 7.254084 GGTGCTTTGTACTTTCTGTGAATTTTG 60.254 37.037 0.00 0.00 0.00 2.44
290 291 7.487829 GTGCTTTGTACTTTCTGTGAATTTTGA 59.512 33.333 0.00 0.00 0.00 2.69
291 292 8.196771 TGCTTTGTACTTTCTGTGAATTTTGAT 58.803 29.630 0.00 0.00 0.00 2.57
292 293 9.677567 GCTTTGTACTTTCTGTGAATTTTGATA 57.322 29.630 0.00 0.00 0.00 2.15
323 324 5.879237 TGTGGATAAGAAAAATGATCGTGC 58.121 37.500 0.00 0.00 0.00 5.34
328 329 6.745450 GGATAAGAAAAATGATCGTGCGAAAA 59.255 34.615 0.00 0.00 0.00 2.29
334 335 5.811399 AAATGATCGTGCGAAAAGGAATA 57.189 34.783 0.00 0.00 0.00 1.75
335 336 6.377327 AAATGATCGTGCGAAAAGGAATAT 57.623 33.333 0.00 0.00 0.00 1.28
336 337 6.377327 AATGATCGTGCGAAAAGGAATATT 57.623 33.333 0.00 0.00 0.00 1.28
365 366 5.898277 GAAGCATTCACGTCGACAGACAAT 61.898 45.833 17.16 4.89 46.62 2.71
462 550 0.969149 TAGTCACCACTCAGCCACAG 59.031 55.000 0.00 0.00 33.62 3.66
560 655 1.144969 CACGAGCGCCAACTTTTCTA 58.855 50.000 2.29 0.00 0.00 2.10
562 657 1.270147 ACGAGCGCCAACTTTTCTACT 60.270 47.619 2.29 0.00 0.00 2.57
597 692 1.035923 ATCAGCATCGACGGTCTCAT 58.964 50.000 6.57 0.00 0.00 2.90
610 705 2.531912 CGGTCTCATGATTTTCTCGACG 59.468 50.000 0.00 0.00 0.00 5.12
778 888 3.572447 CTCCCTGGCCACACATGCA 62.572 63.158 0.00 0.00 0.00 3.96
820 930 1.348250 CGCGGATGATTCAACCACG 59.652 57.895 12.82 10.74 0.00 4.94
903 1013 4.277672 TCTCGTCGACCTATAAATTCCCAG 59.722 45.833 10.58 0.00 0.00 4.45
920 1030 1.613925 CCAGAAGGTCTGTCGAACTCA 59.386 52.381 4.65 0.00 42.80 3.41
950 1060 5.745312 TCATCACTAGTTCACAATCACCT 57.255 39.130 0.00 0.00 0.00 4.00
958 1074 4.887748 AGTTCACAATCACCTACTCACTG 58.112 43.478 0.00 0.00 0.00 3.66
980 1096 5.080337 TGGTTCACTGTTGAGATAGAGACT 58.920 41.667 0.00 0.00 31.71 3.24
987 1103 7.125053 TCACTGTTGAGATAGAGACTAGAGAGA 59.875 40.741 0.00 0.00 0.00 3.10
992 1108 4.899502 AGATAGAGACTAGAGAGAGCAGC 58.100 47.826 0.00 0.00 0.00 5.25
1005 1121 3.683937 GCAGCGGGCACAATGGTT 61.684 61.111 0.00 0.00 43.97 3.67
1026 1142 3.249986 TGCATTAAGGCCATTGCTTTC 57.750 42.857 9.98 0.00 37.94 2.62
1036 1152 3.181510 GGCCATTGCTTTCGTAGTTGTAG 60.182 47.826 0.00 0.00 37.74 2.74
1053 1169 0.320050 TAGTTGTCGCTGGTGCATCA 59.680 50.000 0.00 0.00 39.64 3.07
1054 1170 0.534877 AGTTGTCGCTGGTGCATCAA 60.535 50.000 0.00 0.00 39.64 2.57
1058 1174 0.523072 GTCGCTGGTGCATCAATTGT 59.477 50.000 0.00 0.00 39.64 2.71
1068 1184 0.323360 CATCAATTGTCCCGGTGGGT 60.323 55.000 5.13 0.00 44.74 4.51
1072 1188 2.137177 AATTGTCCCGGTGGGTGAGG 62.137 60.000 0.00 0.00 44.74 3.86
1116 1232 1.841556 TCTCAACCTCGGCCTTGGT 60.842 57.895 10.32 10.32 38.35 3.67
1145 1261 1.029947 GTTGGTATCGGCTTGGGTGG 61.030 60.000 0.00 0.00 0.00 4.61
1174 1290 2.046892 CAGGTGGTTCCGGCTCTG 60.047 66.667 0.00 0.00 41.99 3.35
1179 1295 4.821589 GGTTCCGGCTCTGGCTCG 62.822 72.222 0.00 0.00 38.73 5.03
1185 1301 3.706373 GGCTCTGGCTCGGGTTCA 61.706 66.667 0.00 0.00 38.73 3.18
1301 1438 1.695242 TGTTGGAGTCGGTATTGGTGT 59.305 47.619 0.00 0.00 0.00 4.16
1302 1439 2.898612 TGTTGGAGTCGGTATTGGTGTA 59.101 45.455 0.00 0.00 0.00 2.90
1331 1468 2.299867 GTGGTGGTTCTAGTTCCGGTTA 59.700 50.000 0.00 0.00 0.00 2.85
1335 1472 2.502538 TGGTTCTAGTTCCGGTTATGGG 59.497 50.000 0.00 0.00 0.00 4.00
1341 1478 3.033919 TTCCGGTTATGGGTCGGGC 62.034 63.158 0.00 0.00 43.54 6.13
1371 1508 5.193679 TCTGTCTCTCGTTCTGGATCAATA 58.806 41.667 0.00 0.00 0.00 1.90
1423 1560 1.376466 GCTTCTGGGTCAGGCTCAA 59.624 57.895 0.00 0.00 31.51 3.02
1485 1622 3.945640 ATTGGATTAGGTGGTGGTACC 57.054 47.619 4.43 4.43 41.17 3.34
1523 1660 1.130054 TCAGGGTCAGGCTCAGCTTT 61.130 55.000 0.00 0.00 0.00 3.51
1549 1686 3.706373 GCTCTGGGTCGGGAAGCA 61.706 66.667 0.00 0.00 0.00 3.91
1592 1729 1.112315 AGCTCTAGTGCAGGATCCGG 61.112 60.000 18.36 7.64 34.99 5.14
1651 1907 2.771089 CAGGTTCAAGTGCAAGCTCTA 58.229 47.619 0.00 0.00 28.96 2.43
1656 1912 1.345741 TCAAGTGCAAGCTCTAGTGCT 59.654 47.619 13.47 13.47 46.40 4.40
1657 1913 1.463831 CAAGTGCAAGCTCTAGTGCTG 59.536 52.381 19.41 13.99 43.24 4.41
1725 1981 1.846541 GCGAGCTAGGATGAAGACAC 58.153 55.000 0.00 0.00 0.00 3.67
1726 1982 1.407258 GCGAGCTAGGATGAAGACACT 59.593 52.381 0.00 0.00 0.00 3.55
1790 2049 6.582636 ACATACATAGTGATTTCGACCATGT 58.417 36.000 0.00 0.00 0.00 3.21
1892 2152 9.799106 TTTGAATAAAGGATCCTAGATGAATCC 57.201 33.333 16.55 0.00 0.00 3.01
1910 2170 5.469421 TGAATCCCAAATGCATGTTGTTTTC 59.531 36.000 0.00 9.59 0.00 2.29
1918 2178 7.491696 CCAAATGCATGTTGTTTTCCAATTTTT 59.508 29.630 0.00 0.00 35.02 1.94
2013 2273 6.668283 ACACCAGAGTTGTATCCTTATGTAGT 59.332 38.462 0.00 0.00 0.00 2.73
2020 2280 8.086143 AGTTGTATCCTTATGTAGTTAGCCAA 57.914 34.615 0.00 0.00 0.00 4.52
2024 2284 4.766375 TCCTTATGTAGTTAGCCAAGCAC 58.234 43.478 0.00 0.00 0.00 4.40
2096 5937 2.170607 GGGCTCTCACCTAGTTGCAATA 59.829 50.000 0.59 0.00 0.00 1.90
2121 5966 6.717997 AGCATCAAGATTATGATATTGCCACA 59.282 34.615 0.19 0.00 37.96 4.17
2122 5967 7.027760 GCATCAAGATTATGATATTGCCACAG 58.972 38.462 0.19 0.00 37.96 3.66
2133 5978 2.018542 TTGCCACAGAGTATTACGGC 57.981 50.000 0.00 0.00 40.02 5.68
2162 6007 8.542497 TGTATAAATCTACTTGGAACACACAC 57.458 34.615 0.00 0.00 39.29 3.82
2164 6009 5.751243 AAATCTACTTGGAACACACACAC 57.249 39.130 0.00 0.00 39.29 3.82
2166 6011 3.527533 TCTACTTGGAACACACACACAC 58.472 45.455 0.00 0.00 39.29 3.82
2167 6012 2.192664 ACTTGGAACACACACACACA 57.807 45.000 0.00 0.00 39.29 3.72
2168 6013 1.810151 ACTTGGAACACACACACACAC 59.190 47.619 0.00 0.00 39.29 3.82
2169 6014 1.809547 CTTGGAACACACACACACACA 59.190 47.619 0.00 0.00 39.29 3.72
2170 6015 1.160989 TGGAACACACACACACACAC 58.839 50.000 0.00 0.00 0.00 3.82
2171 6016 1.160989 GGAACACACACACACACACA 58.839 50.000 0.00 0.00 0.00 3.72
2172 6017 1.135803 GGAACACACACACACACACAC 60.136 52.381 0.00 0.00 0.00 3.82
2173 6018 1.533299 GAACACACACACACACACACA 59.467 47.619 0.00 0.00 0.00 3.72
2174 6019 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2175 6020 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2176 6021 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2177 6022 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2178 6023 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2179 6024 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2180 6025 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2181 6026 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2182 6027 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2183 6028 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2184 6029 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2185 6030 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2186 6031 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2187 6032 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2188 6033 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2189 6034 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2190 6035 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2191 6036 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2192 6037 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2193 6038 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2194 6039 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2195 6040 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2196 6041 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2197 6042 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2198 6043 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2199 6044 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2200 6045 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2201 6046 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2202 6047 0.871722 ACACACACACACACACACAC 59.128 50.000 0.00 0.00 0.00 3.82
2203 6048 0.871057 CACACACACACACACACACA 59.129 50.000 0.00 0.00 0.00 3.72
2204 6049 1.468127 CACACACACACACACACACAT 59.532 47.619 0.00 0.00 0.00 3.21
2205 6050 2.675348 CACACACACACACACACACATA 59.325 45.455 0.00 0.00 0.00 2.29
2206 6051 3.312146 CACACACACACACACACACATAT 59.688 43.478 0.00 0.00 0.00 1.78
2207 6052 4.509600 CACACACACACACACACACATATA 59.490 41.667 0.00 0.00 0.00 0.86
2208 6053 5.179182 CACACACACACACACACACATATAT 59.821 40.000 0.00 0.00 0.00 0.86
2209 6054 6.367422 CACACACACACACACACACATATATA 59.633 38.462 0.00 0.00 0.00 0.86
2210 6055 7.064490 CACACACACACACACACACATATATAT 59.936 37.037 0.00 0.00 0.00 0.86
2211 6056 8.254508 ACACACACACACACACACATATATATA 58.745 33.333 0.00 0.00 0.00 0.86
2212 6057 9.260002 CACACACACACACACACATATATATAT 57.740 33.333 0.00 0.00 0.00 0.86
2401 6285 8.893563 TTTAGATAATGGGTGATGTTTCCTTT 57.106 30.769 0.00 0.00 0.00 3.11
2404 6288 4.871933 AATGGGTGATGTTTCCTTTGTC 57.128 40.909 0.00 0.00 0.00 3.18
2629 6515 9.308000 TGTATAAATTTGGACAACCTTCAGAAT 57.692 29.630 0.00 0.00 37.04 2.40
2632 6518 6.581171 AATTTGGACAACCTTCAGAATCTC 57.419 37.500 0.00 0.00 37.04 2.75
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 4.143333 CACACGCCGACCCTAGGG 62.143 72.222 27.36 27.36 42.03 3.53
18 19 2.444700 AAACACACGCCGACCCTAGG 62.445 60.000 0.06 0.06 0.00 3.02
19 20 1.005394 AAACACACGCCGACCCTAG 60.005 57.895 0.00 0.00 0.00 3.02
20 21 1.005867 GAAACACACGCCGACCCTA 60.006 57.895 0.00 0.00 0.00 3.53
21 22 2.280592 GAAACACACGCCGACCCT 60.281 61.111 0.00 0.00 0.00 4.34
22 23 1.441732 AAAGAAACACACGCCGACCC 61.442 55.000 0.00 0.00 0.00 4.46
23 24 0.041576 GAAAGAAACACACGCCGACC 60.042 55.000 0.00 0.00 0.00 4.79
24 25 0.653636 TGAAAGAAACACACGCCGAC 59.346 50.000 0.00 0.00 0.00 4.79
25 26 0.934496 CTGAAAGAAACACACGCCGA 59.066 50.000 0.00 0.00 34.07 5.54
26 27 0.655733 ACTGAAAGAAACACACGCCG 59.344 50.000 0.00 0.00 37.43 6.46
27 28 2.844122 AACTGAAAGAAACACACGCC 57.156 45.000 0.00 0.00 37.43 5.68
28 29 4.464112 GGATAACTGAAAGAAACACACGC 58.536 43.478 0.00 0.00 37.43 5.34
29 30 4.755123 AGGGATAACTGAAAGAAACACACG 59.245 41.667 0.00 0.00 37.43 4.49
30 31 5.763204 TCAGGGATAACTGAAAGAAACACAC 59.237 40.000 0.00 0.00 44.03 3.82
31 32 5.935945 TCAGGGATAACTGAAAGAAACACA 58.064 37.500 0.00 0.00 44.03 3.72
42 43 3.069586 TCACGGCTAATCAGGGATAACTG 59.930 47.826 0.00 0.00 39.84 3.16
43 44 3.305720 TCACGGCTAATCAGGGATAACT 58.694 45.455 0.00 0.00 0.00 2.24
44 45 3.746045 TCACGGCTAATCAGGGATAAC 57.254 47.619 0.00 0.00 0.00 1.89
45 46 4.102524 ACATTCACGGCTAATCAGGGATAA 59.897 41.667 0.00 0.00 0.00 1.75
46 47 3.646162 ACATTCACGGCTAATCAGGGATA 59.354 43.478 0.00 0.00 0.00 2.59
47 48 2.439507 ACATTCACGGCTAATCAGGGAT 59.560 45.455 0.00 0.00 0.00 3.85
48 49 1.837439 ACATTCACGGCTAATCAGGGA 59.163 47.619 0.00 0.00 0.00 4.20
49 50 2.332063 ACATTCACGGCTAATCAGGG 57.668 50.000 0.00 0.00 0.00 4.45
50 51 3.809832 CCTAACATTCACGGCTAATCAGG 59.190 47.826 0.00 0.00 0.00 3.86
51 52 4.442706 ACCTAACATTCACGGCTAATCAG 58.557 43.478 0.00 0.00 0.00 2.90
52 53 4.481368 ACCTAACATTCACGGCTAATCA 57.519 40.909 0.00 0.00 0.00 2.57
53 54 5.813080 AAACCTAACATTCACGGCTAATC 57.187 39.130 0.00 0.00 0.00 1.75
54 55 5.163794 CGAAAACCTAACATTCACGGCTAAT 60.164 40.000 0.00 0.00 0.00 1.73
55 56 4.152759 CGAAAACCTAACATTCACGGCTAA 59.847 41.667 0.00 0.00 0.00 3.09
56 57 3.680937 CGAAAACCTAACATTCACGGCTA 59.319 43.478 0.00 0.00 0.00 3.93
57 58 2.482721 CGAAAACCTAACATTCACGGCT 59.517 45.455 0.00 0.00 0.00 5.52
58 59 2.413634 CCGAAAACCTAACATTCACGGC 60.414 50.000 0.00 0.00 0.00 5.68
59 60 2.160813 CCCGAAAACCTAACATTCACGG 59.839 50.000 0.00 0.00 37.98 4.94
60 61 2.809696 ACCCGAAAACCTAACATTCACG 59.190 45.455 0.00 0.00 0.00 4.35
61 62 4.841443 AACCCGAAAACCTAACATTCAC 57.159 40.909 0.00 0.00 0.00 3.18
62 63 4.038162 CCAAACCCGAAAACCTAACATTCA 59.962 41.667 0.00 0.00 0.00 2.57
63 64 4.038282 ACCAAACCCGAAAACCTAACATTC 59.962 41.667 0.00 0.00 0.00 2.67
64 65 3.962063 ACCAAACCCGAAAACCTAACATT 59.038 39.130 0.00 0.00 0.00 2.71
65 66 3.568443 ACCAAACCCGAAAACCTAACAT 58.432 40.909 0.00 0.00 0.00 2.71
66 67 3.015675 ACCAAACCCGAAAACCTAACA 57.984 42.857 0.00 0.00 0.00 2.41
67 68 4.389890 AAACCAAACCCGAAAACCTAAC 57.610 40.909 0.00 0.00 0.00 2.34
68 69 5.187381 AGAAAAACCAAACCCGAAAACCTAA 59.813 36.000 0.00 0.00 0.00 2.69
69 70 4.710865 AGAAAAACCAAACCCGAAAACCTA 59.289 37.500 0.00 0.00 0.00 3.08
70 71 3.516300 AGAAAAACCAAACCCGAAAACCT 59.484 39.130 0.00 0.00 0.00 3.50
71 72 3.864243 AGAAAAACCAAACCCGAAAACC 58.136 40.909 0.00 0.00 0.00 3.27
72 73 8.645730 TTATAAGAAAAACCAAACCCGAAAAC 57.354 30.769 0.00 0.00 0.00 2.43
73 74 9.096160 GTTTATAAGAAAAACCAAACCCGAAAA 57.904 29.630 0.00 0.00 31.94 2.29
74 75 8.476447 AGTTTATAAGAAAAACCAAACCCGAAA 58.524 29.630 0.00 0.00 37.51 3.46
75 76 8.009622 AGTTTATAAGAAAAACCAAACCCGAA 57.990 30.769 0.00 0.00 37.51 4.30
76 77 7.585579 AGTTTATAAGAAAAACCAAACCCGA 57.414 32.000 0.00 0.00 37.51 5.14
77 78 8.785946 TCTAGTTTATAAGAAAAACCAAACCCG 58.214 33.333 0.00 0.00 37.51 5.28
78 79 9.903682 GTCTAGTTTATAAGAAAAACCAAACCC 57.096 33.333 0.00 0.00 37.51 4.11
79 80 9.903682 GGTCTAGTTTATAAGAAAAACCAAACC 57.096 33.333 0.00 0.00 37.51 3.27
83 84 9.856162 AGTTGGTCTAGTTTATAAGAAAAACCA 57.144 29.630 6.89 6.89 37.51 3.67
90 91 9.756571 AGAAGAGAGTTGGTCTAGTTTATAAGA 57.243 33.333 0.00 0.00 34.71 2.10
93 94 9.756571 AGAAGAAGAGAGTTGGTCTAGTTTATA 57.243 33.333 0.00 0.00 34.71 0.98
94 95 8.658840 AGAAGAAGAGAGTTGGTCTAGTTTAT 57.341 34.615 0.00 0.00 34.71 1.40
95 96 8.480133 AAGAAGAAGAGAGTTGGTCTAGTTTA 57.520 34.615 0.00 0.00 34.71 2.01
96 97 6.987403 AGAAGAAGAGAGTTGGTCTAGTTT 57.013 37.500 0.00 0.00 34.71 2.66
97 98 6.987403 AAGAAGAAGAGAGTTGGTCTAGTT 57.013 37.500 0.00 0.00 34.71 2.24
98 99 8.527810 CATTAAGAAGAAGAGAGTTGGTCTAGT 58.472 37.037 0.00 0.00 34.71 2.57
99 100 8.744652 TCATTAAGAAGAAGAGAGTTGGTCTAG 58.255 37.037 0.00 0.00 34.71 2.43
100 101 8.651589 TCATTAAGAAGAAGAGAGTTGGTCTA 57.348 34.615 0.00 0.00 34.71 2.59
101 102 7.546250 TCATTAAGAAGAAGAGAGTTGGTCT 57.454 36.000 0.00 0.00 38.71 3.85
102 103 8.608844 TTTCATTAAGAAGAAGAGAGTTGGTC 57.391 34.615 0.00 0.00 37.57 4.02
103 104 9.007901 CATTTCATTAAGAAGAAGAGAGTTGGT 57.992 33.333 0.00 0.00 37.57 3.67
104 105 7.967303 GCATTTCATTAAGAAGAAGAGAGTTGG 59.033 37.037 0.00 0.00 37.57 3.77
105 106 8.509690 TGCATTTCATTAAGAAGAAGAGAGTTG 58.490 33.333 0.00 0.00 37.57 3.16
106 107 8.627208 TGCATTTCATTAAGAAGAAGAGAGTT 57.373 30.769 0.00 0.00 37.57 3.01
107 108 8.627208 TTGCATTTCATTAAGAAGAAGAGAGT 57.373 30.769 0.00 0.00 37.57 3.24
108 109 8.944029 TCTTGCATTTCATTAAGAAGAAGAGAG 58.056 33.333 0.00 0.00 37.57 3.20
109 110 8.853077 TCTTGCATTTCATTAAGAAGAAGAGA 57.147 30.769 0.00 0.00 37.57 3.10
110 111 9.339492 GTTCTTGCATTTCATTAAGAAGAAGAG 57.661 33.333 0.00 0.00 39.15 2.85
111 112 8.299570 GGTTCTTGCATTTCATTAAGAAGAAGA 58.700 33.333 0.00 0.00 39.15 2.87
112 113 7.543520 GGGTTCTTGCATTTCATTAAGAAGAAG 59.456 37.037 0.00 0.00 39.15 2.85
113 114 7.378181 GGGTTCTTGCATTTCATTAAGAAGAA 58.622 34.615 0.00 0.00 39.15 2.52
114 115 6.071391 GGGGTTCTTGCATTTCATTAAGAAGA 60.071 38.462 0.00 0.00 39.15 2.87
115 116 6.101997 GGGGTTCTTGCATTTCATTAAGAAG 58.898 40.000 0.00 0.00 39.15 2.85
116 117 5.046663 GGGGGTTCTTGCATTTCATTAAGAA 60.047 40.000 0.00 0.00 36.96 2.52
117 118 4.466015 GGGGGTTCTTGCATTTCATTAAGA 59.534 41.667 0.00 0.00 0.00 2.10
118 119 4.467438 AGGGGGTTCTTGCATTTCATTAAG 59.533 41.667 0.00 0.00 0.00 1.85
119 120 4.222588 CAGGGGGTTCTTGCATTTCATTAA 59.777 41.667 0.00 0.00 0.00 1.40
120 121 3.768757 CAGGGGGTTCTTGCATTTCATTA 59.231 43.478 0.00 0.00 0.00 1.90
121 122 2.568509 CAGGGGGTTCTTGCATTTCATT 59.431 45.455 0.00 0.00 0.00 2.57
122 123 2.181975 CAGGGGGTTCTTGCATTTCAT 58.818 47.619 0.00 0.00 0.00 2.57
123 124 1.631405 CAGGGGGTTCTTGCATTTCA 58.369 50.000 0.00 0.00 0.00 2.69
124 125 0.247460 GCAGGGGGTTCTTGCATTTC 59.753 55.000 0.00 0.00 0.00 2.17
125 126 1.194121 GGCAGGGGGTTCTTGCATTT 61.194 55.000 2.78 0.00 0.00 2.32
126 127 1.610379 GGCAGGGGGTTCTTGCATT 60.610 57.895 2.78 0.00 0.00 3.56
127 128 2.037847 GGCAGGGGGTTCTTGCAT 59.962 61.111 2.78 0.00 0.00 3.96
128 129 4.299796 GGGCAGGGGGTTCTTGCA 62.300 66.667 2.78 0.00 0.00 4.08
130 131 2.386391 AAAGGGGCAGGGGGTTCTTG 62.386 60.000 0.00 0.00 0.00 3.02
131 132 1.674931 AAAAGGGGCAGGGGGTTCTT 61.675 55.000 0.00 0.00 0.00 2.52
132 133 2.097727 AAAAGGGGCAGGGGGTTCT 61.098 57.895 0.00 0.00 0.00 3.01
133 134 1.913262 CAAAAGGGGCAGGGGGTTC 60.913 63.158 0.00 0.00 0.00 3.62
134 135 2.204034 CAAAAGGGGCAGGGGGTT 59.796 61.111 0.00 0.00 0.00 4.11
135 136 2.785389 TCAAAAGGGGCAGGGGGT 60.785 61.111 0.00 0.00 0.00 4.95
136 137 2.037847 CTCAAAAGGGGCAGGGGG 59.962 66.667 0.00 0.00 0.00 5.40
137 138 2.037847 CCTCAAAAGGGGCAGGGG 59.962 66.667 0.00 0.00 39.21 4.79
146 147 6.494842 TCATTTTTCGAGAACACCTCAAAAG 58.505 36.000 0.00 0.00 42.06 2.27
147 148 6.443934 TCATTTTTCGAGAACACCTCAAAA 57.556 33.333 0.00 0.00 42.06 2.44
148 149 6.565811 CGATCATTTTTCGAGAACACCTCAAA 60.566 38.462 0.00 0.00 42.06 2.69
149 150 5.107104 CGATCATTTTTCGAGAACACCTCAA 60.107 40.000 0.00 0.00 42.06 3.02
150 151 4.388773 CGATCATTTTTCGAGAACACCTCA 59.611 41.667 0.00 0.00 42.06 3.86
151 152 4.389077 ACGATCATTTTTCGAGAACACCTC 59.611 41.667 0.00 0.00 39.81 3.85
152 153 4.315803 ACGATCATTTTTCGAGAACACCT 58.684 39.130 0.00 0.00 39.81 4.00
153 154 4.663636 ACGATCATTTTTCGAGAACACC 57.336 40.909 0.00 0.00 39.81 4.16
154 155 5.675970 TCAACGATCATTTTTCGAGAACAC 58.324 37.500 0.00 0.00 39.81 3.32
155 156 5.915812 TCAACGATCATTTTTCGAGAACA 57.084 34.783 0.00 0.00 39.81 3.18
156 157 6.766084 AGATCAACGATCATTTTTCGAGAAC 58.234 36.000 6.74 0.00 41.12 3.01
157 158 6.968131 AGATCAACGATCATTTTTCGAGAA 57.032 33.333 6.74 0.00 41.12 2.87
158 159 6.968131 AAGATCAACGATCATTTTTCGAGA 57.032 33.333 6.74 0.00 41.12 4.04
159 160 7.848051 CCTAAAGATCAACGATCATTTTTCGAG 59.152 37.037 6.74 0.00 41.12 4.04
160 161 7.201609 CCCTAAAGATCAACGATCATTTTTCGA 60.202 37.037 6.74 0.00 41.12 3.71
161 162 6.907212 CCCTAAAGATCAACGATCATTTTTCG 59.093 38.462 6.74 0.00 41.12 3.46
162 163 7.985476 TCCCTAAAGATCAACGATCATTTTTC 58.015 34.615 6.74 0.00 41.12 2.29
163 164 7.415653 GCTCCCTAAAGATCAACGATCATTTTT 60.416 37.037 6.74 1.93 41.12 1.94
164 165 6.038714 GCTCCCTAAAGATCAACGATCATTTT 59.961 38.462 6.74 2.54 41.12 1.82
165 166 5.529060 GCTCCCTAAAGATCAACGATCATTT 59.471 40.000 6.74 6.67 41.12 2.32
166 167 5.059833 GCTCCCTAAAGATCAACGATCATT 58.940 41.667 6.74 3.62 41.12 2.57
167 168 4.636249 GCTCCCTAAAGATCAACGATCAT 58.364 43.478 6.74 0.00 41.12 2.45
168 169 3.490933 CGCTCCCTAAAGATCAACGATCA 60.491 47.826 6.74 0.00 41.12 2.92
169 170 3.053455 CGCTCCCTAAAGATCAACGATC 58.947 50.000 0.00 0.00 39.17 3.69
170 171 2.224066 CCGCTCCCTAAAGATCAACGAT 60.224 50.000 0.00 0.00 0.00 3.73
171 172 1.136305 CCGCTCCCTAAAGATCAACGA 59.864 52.381 0.00 0.00 0.00 3.85
172 173 1.571919 CCGCTCCCTAAAGATCAACG 58.428 55.000 0.00 0.00 0.00 4.10
173 174 1.300481 GCCGCTCCCTAAAGATCAAC 58.700 55.000 0.00 0.00 0.00 3.18
174 175 0.179084 CGCCGCTCCCTAAAGATCAA 60.179 55.000 0.00 0.00 0.00 2.57
175 176 1.040893 TCGCCGCTCCCTAAAGATCA 61.041 55.000 0.00 0.00 0.00 2.92
176 177 0.597898 GTCGCCGCTCCCTAAAGATC 60.598 60.000 0.00 0.00 0.00 2.75
177 178 1.043673 AGTCGCCGCTCCCTAAAGAT 61.044 55.000 0.00 0.00 0.00 2.40
178 179 1.664321 GAGTCGCCGCTCCCTAAAGA 61.664 60.000 0.00 0.00 0.00 2.52
179 180 1.227002 GAGTCGCCGCTCCCTAAAG 60.227 63.158 0.00 0.00 0.00 1.85
180 181 2.890371 GAGTCGCCGCTCCCTAAA 59.110 61.111 0.00 0.00 0.00 1.85
181 182 3.515286 CGAGTCGCCGCTCCCTAA 61.515 66.667 0.00 0.00 32.11 2.69
182 183 4.790962 ACGAGTCGCCGCTCCCTA 62.791 66.667 13.59 0.00 32.11 3.53
184 185 4.736896 AAACGAGTCGCCGCTCCC 62.737 66.667 13.59 0.00 32.11 4.30
185 186 2.737376 AAAACGAGTCGCCGCTCC 60.737 61.111 13.59 0.00 32.11 4.70
186 187 2.019951 TCAAAACGAGTCGCCGCTC 61.020 57.895 13.59 0.00 0.00 5.03
187 188 2.028484 TCAAAACGAGTCGCCGCT 59.972 55.556 13.59 0.00 0.00 5.52
188 189 2.170273 GTCAAAACGAGTCGCCGC 59.830 61.111 13.59 0.00 0.00 6.53
197 198 5.024816 CGACCACTATCGTCGTCAAAACG 62.025 52.174 2.34 0.00 46.17 3.60
198 199 2.340577 CGACCACTATCGTCGTCAAAAC 59.659 50.000 2.34 0.00 46.17 2.43
199 200 2.587956 CGACCACTATCGTCGTCAAAA 58.412 47.619 2.34 0.00 46.17 2.44
200 201 2.251869 CGACCACTATCGTCGTCAAA 57.748 50.000 2.34 0.00 46.17 2.69
201 202 3.982213 CGACCACTATCGTCGTCAA 57.018 52.632 2.34 0.00 46.17 3.18
209 210 0.529378 ACCACCGAACGACCACTATC 59.471 55.000 0.00 0.00 0.00 2.08
210 211 0.529378 GACCACCGAACGACCACTAT 59.471 55.000 0.00 0.00 0.00 2.12
211 212 0.538057 AGACCACCGAACGACCACTA 60.538 55.000 0.00 0.00 0.00 2.74
212 213 1.803366 GAGACCACCGAACGACCACT 61.803 60.000 0.00 0.00 0.00 4.00
213 214 1.372623 GAGACCACCGAACGACCAC 60.373 63.158 0.00 0.00 0.00 4.16
214 215 1.802337 CTGAGACCACCGAACGACCA 61.802 60.000 0.00 0.00 0.00 4.02
215 216 1.080705 CTGAGACCACCGAACGACC 60.081 63.158 0.00 0.00 0.00 4.79
216 217 0.313043 TTCTGAGACCACCGAACGAC 59.687 55.000 0.00 0.00 0.00 4.34
217 218 1.201647 GATTCTGAGACCACCGAACGA 59.798 52.381 0.00 0.00 0.00 3.85
218 219 1.202582 AGATTCTGAGACCACCGAACG 59.797 52.381 0.00 0.00 0.00 3.95
219 220 2.996621 CAAGATTCTGAGACCACCGAAC 59.003 50.000 0.00 0.00 0.00 3.95
220 221 2.897326 TCAAGATTCTGAGACCACCGAA 59.103 45.455 0.00 0.00 0.00 4.30
221 222 2.525368 TCAAGATTCTGAGACCACCGA 58.475 47.619 0.00 0.00 0.00 4.69
222 223 3.533606 ATCAAGATTCTGAGACCACCG 57.466 47.619 0.00 0.00 0.00 4.94
223 224 9.566432 AAATTATATCAAGATTCTGAGACCACC 57.434 33.333 0.00 0.00 0.00 4.61
246 247 9.777297 ACAAAGCACCTCAAACATAATAAAAAT 57.223 25.926 0.00 0.00 0.00 1.82
248 249 9.685828 GTACAAAGCACCTCAAACATAATAAAA 57.314 29.630 0.00 0.00 0.00 1.52
249 250 9.073475 AGTACAAAGCACCTCAAACATAATAAA 57.927 29.630 0.00 0.00 0.00 1.40
250 251 8.630054 AGTACAAAGCACCTCAAACATAATAA 57.370 30.769 0.00 0.00 0.00 1.40
251 252 8.630054 AAGTACAAAGCACCTCAAACATAATA 57.370 30.769 0.00 0.00 0.00 0.98
252 253 7.524717 AAGTACAAAGCACCTCAAACATAAT 57.475 32.000 0.00 0.00 0.00 1.28
253 254 6.952773 AAGTACAAAGCACCTCAAACATAA 57.047 33.333 0.00 0.00 0.00 1.90
254 255 6.770785 AGAAAGTACAAAGCACCTCAAACATA 59.229 34.615 0.00 0.00 0.00 2.29
255 256 5.594317 AGAAAGTACAAAGCACCTCAAACAT 59.406 36.000 0.00 0.00 0.00 2.71
256 257 4.947388 AGAAAGTACAAAGCACCTCAAACA 59.053 37.500 0.00 0.00 0.00 2.83
257 258 5.163652 ACAGAAAGTACAAAGCACCTCAAAC 60.164 40.000 0.00 0.00 0.00 2.93
258 259 4.947388 ACAGAAAGTACAAAGCACCTCAAA 59.053 37.500 0.00 0.00 0.00 2.69
259 260 4.335315 CACAGAAAGTACAAAGCACCTCAA 59.665 41.667 0.00 0.00 0.00 3.02
260 261 3.876914 CACAGAAAGTACAAAGCACCTCA 59.123 43.478 0.00 0.00 0.00 3.86
261 262 4.127171 TCACAGAAAGTACAAAGCACCTC 58.873 43.478 0.00 0.00 0.00 3.85
262 263 4.150897 TCACAGAAAGTACAAAGCACCT 57.849 40.909 0.00 0.00 0.00 4.00
263 264 4.893424 TTCACAGAAAGTACAAAGCACC 57.107 40.909 0.00 0.00 0.00 5.01
264 265 7.487829 TCAAAATTCACAGAAAGTACAAAGCAC 59.512 33.333 0.00 0.00 0.00 4.40
265 266 7.542890 TCAAAATTCACAGAAAGTACAAAGCA 58.457 30.769 0.00 0.00 0.00 3.91
266 267 7.985634 TCAAAATTCACAGAAAGTACAAAGC 57.014 32.000 0.00 0.00 0.00 3.51
295 296 9.784531 ACGATCATTTTTCTTATCCACATATCT 57.215 29.630 0.00 0.00 0.00 1.98
296 297 9.817365 CACGATCATTTTTCTTATCCACATATC 57.183 33.333 0.00 0.00 0.00 1.63
297 298 8.292448 GCACGATCATTTTTCTTATCCACATAT 58.708 33.333 0.00 0.00 0.00 1.78
298 299 7.518211 CGCACGATCATTTTTCTTATCCACATA 60.518 37.037 0.00 0.00 0.00 2.29
299 300 6.498304 GCACGATCATTTTTCTTATCCACAT 58.502 36.000 0.00 0.00 0.00 3.21
300 301 5.447144 CGCACGATCATTTTTCTTATCCACA 60.447 40.000 0.00 0.00 0.00 4.17
301 302 4.963953 CGCACGATCATTTTTCTTATCCAC 59.036 41.667 0.00 0.00 0.00 4.02
302 303 4.873259 TCGCACGATCATTTTTCTTATCCA 59.127 37.500 0.00 0.00 0.00 3.41
303 304 5.403897 TCGCACGATCATTTTTCTTATCC 57.596 39.130 0.00 0.00 0.00 2.59
304 305 7.044706 CCTTTTCGCACGATCATTTTTCTTATC 60.045 37.037 0.00 0.00 0.00 1.75
305 306 6.747280 CCTTTTCGCACGATCATTTTTCTTAT 59.253 34.615 0.00 0.00 0.00 1.73
306 307 6.072948 TCCTTTTCGCACGATCATTTTTCTTA 60.073 34.615 0.00 0.00 0.00 2.10
307 308 4.917415 CCTTTTCGCACGATCATTTTTCTT 59.083 37.500 0.00 0.00 0.00 2.52
308 309 4.215399 TCCTTTTCGCACGATCATTTTTCT 59.785 37.500 0.00 0.00 0.00 2.52
309 310 4.472286 TCCTTTTCGCACGATCATTTTTC 58.528 39.130 0.00 0.00 0.00 2.29
310 311 4.497473 TCCTTTTCGCACGATCATTTTT 57.503 36.364 0.00 0.00 0.00 1.94
311 312 4.497473 TTCCTTTTCGCACGATCATTTT 57.503 36.364 0.00 0.00 0.00 1.82
314 315 5.333339 CGAATATTCCTTTTCGCACGATCAT 60.333 40.000 9.87 0.00 38.36 2.45
320 321 4.331717 TCCTTCGAATATTCCTTTTCGCAC 59.668 41.667 9.87 0.00 43.26 5.34
323 324 5.064707 TGCTTCCTTCGAATATTCCTTTTCG 59.935 40.000 9.87 0.00 44.53 3.46
328 329 5.529060 GTGAATGCTTCCTTCGAATATTCCT 59.471 40.000 9.87 0.00 34.12 3.36
334 335 2.673368 GACGTGAATGCTTCCTTCGAAT 59.327 45.455 0.00 0.00 0.00 3.34
335 336 2.066262 GACGTGAATGCTTCCTTCGAA 58.934 47.619 0.00 0.00 0.00 3.71
336 337 1.710013 GACGTGAATGCTTCCTTCGA 58.290 50.000 0.00 0.00 0.00 3.71
338 339 1.390463 GTCGACGTGAATGCTTCCTTC 59.610 52.381 0.00 0.00 0.00 3.46
339 340 1.270094 TGTCGACGTGAATGCTTCCTT 60.270 47.619 11.62 0.00 0.00 3.36
340 341 0.317160 TGTCGACGTGAATGCTTCCT 59.683 50.000 11.62 0.00 0.00 3.36
341 342 0.716108 CTGTCGACGTGAATGCTTCC 59.284 55.000 11.62 0.00 0.00 3.46
344 345 0.313987 TGTCTGTCGACGTGAATGCT 59.686 50.000 11.62 0.00 43.21 3.79
359 360 2.093500 TGCAGAGCGGATGTAATTGTCT 60.093 45.455 0.00 0.00 0.00 3.41
365 366 0.812549 TACGTGCAGAGCGGATGTAA 59.187 50.000 0.00 0.00 34.79 2.41
420 421 5.858381 AGCTGAACGATGTCAACCATATAT 58.142 37.500 0.00 0.00 32.56 0.86
421 422 5.276461 AGCTGAACGATGTCAACCATATA 57.724 39.130 0.00 0.00 32.56 0.86
422 423 4.142609 AGCTGAACGATGTCAACCATAT 57.857 40.909 0.00 0.00 32.56 1.78
462 550 3.879932 ATTTAGCGGCGAGAAATTAGC 57.120 42.857 12.98 0.00 0.00 3.09
581 676 1.035923 ATCATGAGACCGTCGATGCT 58.964 50.000 0.09 0.00 0.00 3.79
597 692 1.447140 CCCGGCGTCGAGAAAATCA 60.447 57.895 12.93 0.00 39.00 2.57
778 888 0.687757 TGCTCCAGATTAGCCTCCGT 60.688 55.000 0.00 0.00 39.30 4.69
835 945 2.551459 ACCGATCTACCGATAAAGTCCG 59.449 50.000 0.00 0.00 0.00 4.79
837 947 4.214971 TGCTACCGATCTACCGATAAAGTC 59.785 45.833 0.00 0.00 0.00 3.01
903 1013 1.000163 TGCTGAGTTCGACAGACCTTC 60.000 52.381 5.75 0.00 37.54 3.46
920 1030 4.098501 TGTGAACTAGTGATGATCGATGCT 59.901 41.667 0.54 0.00 0.00 3.79
950 1060 3.958147 TCTCAACAGTGAACCAGTGAGTA 59.042 43.478 8.59 0.00 38.11 2.59
958 1074 5.652994 AGTCTCTATCTCAACAGTGAACC 57.347 43.478 0.00 0.00 31.88 3.62
980 1096 2.043953 TGCCCGCTGCTCTCTCTA 60.044 61.111 0.00 0.00 42.00 2.43
987 1103 4.666253 ACCATTGTGCCCGCTGCT 62.666 61.111 0.00 0.00 42.00 4.24
992 1108 0.320596 AATGCAAACCATTGTGCCCG 60.321 50.000 0.00 0.00 42.44 6.13
1005 1121 3.598299 GAAAGCAATGGCCTTAATGCAA 58.402 40.909 19.62 0.00 42.56 4.08
1026 1142 1.983605 CCAGCGACAACTACAACTACG 59.016 52.381 0.00 0.00 0.00 3.51
1036 1152 0.523072 ATTGATGCACCAGCGACAAC 59.477 50.000 0.00 0.00 46.23 3.32
1116 1232 0.251916 CGATACCAACTCCAAGCCCA 59.748 55.000 0.00 0.00 0.00 5.36
1126 1242 1.029947 CCACCCAAGCCGATACCAAC 61.030 60.000 0.00 0.00 0.00 3.77
1172 1288 3.672295 GAGCCTGAACCCGAGCCAG 62.672 68.421 0.00 0.00 0.00 4.85
1173 1289 3.706373 GAGCCTGAACCCGAGCCA 61.706 66.667 0.00 0.00 0.00 4.75
1174 1290 4.821589 CGAGCCTGAACCCGAGCC 62.822 72.222 0.00 0.00 0.00 4.70
1176 1292 4.148825 CCCGAGCCTGAACCCGAG 62.149 72.222 0.00 0.00 0.00 4.63
1179 1295 2.506472 GATCCCGAGCCTGAACCC 59.494 66.667 0.00 0.00 0.00 4.11
1218 1334 1.002544 GAACCAGACCCTGAACCAGAG 59.997 57.143 0.00 0.00 32.44 3.35
1254 1370 1.550976 CCAAGACCTAGACCACCTGAC 59.449 57.143 0.00 0.00 0.00 3.51
1301 1438 0.400815 AGAACCACCACCACCACCTA 60.401 55.000 0.00 0.00 0.00 3.08
1302 1439 0.400815 TAGAACCACCACCACCACCT 60.401 55.000 0.00 0.00 0.00 4.00
1335 1472 4.148825 ACAGATGCCGAGCCCGAC 62.149 66.667 0.00 0.00 38.22 4.79
1341 1478 0.453793 AACGAGAGACAGATGCCGAG 59.546 55.000 0.00 0.00 0.00 4.63
1455 1592 3.641906 CACCTAATCCAATACCGAGTCCT 59.358 47.826 0.00 0.00 0.00 3.85
1485 1622 1.658686 AACTCGAGCTAGAGCCACCG 61.659 60.000 22.17 2.19 41.77 4.94
1592 1729 2.825836 CTGCACTTGATCCGGCCC 60.826 66.667 0.00 0.00 0.00 5.80
1596 1733 0.461548 TAGAGCCTGCACTTGATCCG 59.538 55.000 0.00 0.00 0.00 4.18
1651 1907 0.252479 CCTGCTTCTGATCCAGCACT 59.748 55.000 7.14 0.00 41.20 4.40
1656 1912 0.250234 CGGAACCTGCTTCTGATCCA 59.750 55.000 0.00 0.00 37.44 3.41
1657 1913 0.537188 TCGGAACCTGCTTCTGATCC 59.463 55.000 0.00 0.00 39.07 3.36
1754 2010 1.896220 ATGTATGTATGGCCTTGCGG 58.104 50.000 3.32 0.00 0.00 5.69
1755 2011 3.433274 CACTATGTATGTATGGCCTTGCG 59.567 47.826 3.32 0.00 0.00 4.85
1771 2027 6.421377 TTCAACATGGTCGAAATCACTATG 57.579 37.500 0.00 0.00 38.39 2.23
1857 2117 7.118723 AGGATCCTTTATTCAAAGCATACACA 58.881 34.615 9.02 0.00 39.95 3.72
1892 2152 5.692613 ATTGGAAAACAACATGCATTTGG 57.307 34.783 19.12 6.19 42.94 3.28
1918 2178 8.166061 AGAGCCCAAGCATGAGAATATAATTTA 58.834 33.333 0.00 0.00 43.56 1.40
2013 2273 9.448438 CAATAGTATATATTGGTGCTTGGCTAA 57.552 33.333 0.00 0.00 32.77 3.09
2096 5937 6.717997 TGTGGCAATATCATAATCTTGATGCT 59.282 34.615 0.00 0.00 36.97 3.79
2121 5966 8.954350 AGATTTATACATACGCCGTAATACTCT 58.046 33.333 0.00 0.00 0.00 3.24
2133 5978 9.524106 TGTGTTCCAAGTAGATTTATACATACG 57.476 33.333 0.00 0.00 0.00 3.06
2160 6005 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2162 6007 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2164 6009 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2166 6011 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2167 6012 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2168 6013 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2169 6014 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2170 6015 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2171 6016 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2172 6017 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2173 6018 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2174 6019 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2175 6020 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2176 6021 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2177 6022 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2178 6023 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2179 6024 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2180 6025 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2181 6026 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2182 6027 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2183 6028 0.871722 GTGTGTGTGTGTGTGTGTGT 59.128 50.000 0.00 0.00 0.00 3.72
2184 6029 0.871057 TGTGTGTGTGTGTGTGTGTG 59.129 50.000 0.00 0.00 0.00 3.82
2185 6030 1.819928 ATGTGTGTGTGTGTGTGTGT 58.180 45.000 0.00 0.00 0.00 3.72
2186 6031 5.861222 ATATATGTGTGTGTGTGTGTGTG 57.139 39.130 0.00 0.00 0.00 3.82
2220 6065 9.898152 TGATTCACCAGAAACACACATATTATA 57.102 29.630 0.00 0.00 37.29 0.98
2221 6066 8.806429 TGATTCACCAGAAACACACATATTAT 57.194 30.769 0.00 0.00 37.29 1.28
2222 6067 8.806429 ATGATTCACCAGAAACACACATATTA 57.194 30.769 0.00 0.00 39.02 0.98
2223 6068 7.707624 ATGATTCACCAGAAACACACATATT 57.292 32.000 0.00 0.00 39.02 1.28
2224 6069 8.985315 ATATGATTCACCAGAAACACACATAT 57.015 30.769 0.00 0.00 39.02 1.78
2225 6070 8.806429 AATATGATTCACCAGAAACACACATA 57.194 30.769 0.00 0.00 39.02 2.29
2226 6071 7.394077 TGAATATGATTCACCAGAAACACACAT 59.606 33.333 0.00 0.00 39.02 3.21
2227 6072 6.714356 TGAATATGATTCACCAGAAACACACA 59.286 34.615 0.00 0.00 39.02 3.72
2228 6073 7.144722 TGAATATGATTCACCAGAAACACAC 57.855 36.000 0.00 0.00 39.02 3.82
2229 6074 7.448161 AGTTGAATATGATTCACCAGAAACACA 59.552 33.333 1.39 0.00 39.02 3.72
2230 6075 7.820648 AGTTGAATATGATTCACCAGAAACAC 58.179 34.615 1.39 0.00 39.02 3.32
2319 6164 8.861033 TGTGTGTTAGCTAATACTATTTACCG 57.139 34.615 27.17 0.00 0.00 4.02
2393 6277 7.759886 GGCCTTATATTTTCAGACAAAGGAAAC 59.240 37.037 0.00 0.00 35.14 2.78
2395 6279 7.182060 AGGCCTTATATTTTCAGACAAAGGAA 58.818 34.615 0.00 0.00 35.14 3.36
2401 6285 7.630082 ACTTGTAGGCCTTATATTTTCAGACA 58.370 34.615 12.58 0.45 0.00 3.41
2404 6288 9.573133 CAAAACTTGTAGGCCTTATATTTTCAG 57.427 33.333 12.58 0.00 0.00 3.02
2646 6532 9.310449 GATACAGAGGGAGTATGTCCTATAAAA 57.690 37.037 0.00 0.00 46.06 1.52
2647 6533 8.453681 TGATACAGAGGGAGTATGTCCTATAAA 58.546 37.037 0.00 0.00 46.06 1.40


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.