Multiple sequence alignment - TraesCS5A01G220400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS5A01G220400 chr5A 100.000 4994 0 0 1 4994 437030271 437035264 0.000000e+00 9223.0
1 TraesCS5A01G220400 chr5A 80.539 519 78 13 1 508 517939771 517940277 1.310000e-100 377.0
2 TraesCS5A01G220400 chr5A 99.363 157 1 0 3597 3753 33872996 33873152 8.180000e-73 285.0
3 TraesCS5A01G220400 chr5A 98.137 161 2 1 3592 3752 472588243 472588402 3.810000e-71 279.0
4 TraesCS5A01G220400 chr5D 90.149 1614 91 36 776 2359 335866133 335867708 0.000000e+00 2037.0
5 TraesCS5A01G220400 chr5D 93.348 932 37 8 2675 3586 335868001 335868927 0.000000e+00 1354.0
6 TraesCS5A01G220400 chr5D 89.806 618 37 14 4392 4994 335869654 335870260 0.000000e+00 769.0
7 TraesCS5A01G220400 chr5D 86.133 512 51 9 3760 4264 335869028 335869526 7.360000e-148 534.0
8 TraesCS5A01G220400 chr5D 92.405 158 11 1 619 775 335865311 335865468 1.810000e-54 224.0
9 TraesCS5A01G220400 chr5B 86.852 1582 101 60 619 2176 393827011 393828509 0.000000e+00 1670.0
10 TraesCS5A01G220400 chr5B 88.308 1129 98 17 2445 3557 393828778 393829888 0.000000e+00 1323.0
11 TraesCS5A01G220400 chr5B 84.755 774 56 27 4264 4994 393830455 393831209 0.000000e+00 719.0
12 TraesCS5A01G220400 chr5B 90.766 444 33 6 3762 4197 393829912 393830355 2.000000e-163 586.0
13 TraesCS5A01G220400 chr5B 99.367 158 1 0 3597 3754 690679693 690679536 2.280000e-73 287.0
14 TraesCS5A01G220400 chr5B 97.546 163 4 0 3588 3750 48189803 48189965 3.810000e-71 279.0
15 TraesCS5A01G220400 chr5B 77.876 113 12 8 2266 2365 393828558 393828670 1.940000e-04 58.4
16 TraesCS5A01G220400 chr7A 86.680 518 60 3 1 509 520891718 520892235 2.610000e-157 566.0
17 TraesCS5A01G220400 chr2D 86.811 508 50 7 1 508 446239667 446239177 7.310000e-153 551.0
18 TraesCS5A01G220400 chr2D 85.797 521 51 15 2 508 28098588 28099099 9.520000e-147 531.0
19 TraesCS5A01G220400 chr2D 85.769 520 53 11 1 508 113534083 113534593 9.520000e-147 531.0
20 TraesCS5A01G220400 chr3D 86.180 521 51 10 1 508 271486292 271486804 1.220000e-150 544.0
21 TraesCS5A01G220400 chr4B 86.792 477 52 6 1 475 412113010 412113477 5.730000e-144 521.0
22 TraesCS5A01G220400 chrUn 86.221 479 51 11 1 475 121733346 121733813 5.770000e-139 505.0
23 TraesCS5A01G220400 chr1B 83.689 515 73 6 1 508 581211974 581212484 4.520000e-130 475.0
24 TraesCS5A01G220400 chr1B 99.363 157 1 0 3597 3753 600258947 600259103 8.180000e-73 285.0
25 TraesCS5A01G220400 chr7D 84.874 476 64 5 1 474 479135448 479134979 1.630000e-129 473.0
26 TraesCS5A01G220400 chr6D 83.365 523 60 17 1 508 418533861 418534371 4.560000e-125 459.0
27 TraesCS5A01G220400 chr6B 82.917 521 57 14 1 508 630577968 630578469 1.650000e-119 440.0
28 TraesCS5A01G220400 chr1A 80.566 530 61 22 1 508 85852044 85851535 2.200000e-98 370.0
29 TraesCS5A01G220400 chr2B 99.363 157 1 0 3597 3753 186376126 186376282 8.180000e-73 285.0
30 TraesCS5A01G220400 chr3A 99.355 155 1 0 3599 3753 34440860 34441014 1.060000e-71 281.0
31 TraesCS5A01G220400 chr3A 95.455 176 7 1 3576 3751 225897036 225896862 3.810000e-71 279.0
32 TraesCS5A01G220400 chr4A 98.137 161 2 1 3593 3753 716494347 716494506 3.810000e-71 279.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS5A01G220400 chr5A 437030271 437035264 4993 False 9223.00 9223 100.0000 1 4994 1 chr5A.!!$F2 4993
1 TraesCS5A01G220400 chr5A 517939771 517940277 506 False 377.00 377 80.5390 1 508 1 chr5A.!!$F4 507
2 TraesCS5A01G220400 chr5D 335865311 335870260 4949 False 983.60 2037 90.3682 619 4994 5 chr5D.!!$F1 4375
3 TraesCS5A01G220400 chr5B 393827011 393831209 4198 False 871.28 1670 85.7114 619 4994 5 chr5B.!!$F2 4375
4 TraesCS5A01G220400 chr7A 520891718 520892235 517 False 566.00 566 86.6800 1 509 1 chr7A.!!$F1 508
5 TraesCS5A01G220400 chr2D 28098588 28099099 511 False 531.00 531 85.7970 2 508 1 chr2D.!!$F1 506
6 TraesCS5A01G220400 chr2D 113534083 113534593 510 False 531.00 531 85.7690 1 508 1 chr2D.!!$F2 507
7 TraesCS5A01G220400 chr3D 271486292 271486804 512 False 544.00 544 86.1800 1 508 1 chr3D.!!$F1 507
8 TraesCS5A01G220400 chr1B 581211974 581212484 510 False 475.00 475 83.6890 1 508 1 chr1B.!!$F1 507
9 TraesCS5A01G220400 chr6D 418533861 418534371 510 False 459.00 459 83.3650 1 508 1 chr6D.!!$F1 507
10 TraesCS5A01G220400 chr6B 630577968 630578469 501 False 440.00 440 82.9170 1 508 1 chr6B.!!$F1 507
11 TraesCS5A01G220400 chr1A 85851535 85852044 509 True 370.00 370 80.5660 1 508 1 chr1A.!!$R1 507

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
963 1702 0.032267 GCCCGGCTAGCTACTTAGTG 59.968 60.0 15.72 0.00 0.00 2.74 F
1177 1916 0.517316 CTTGCTCGCCAACAGGTAAC 59.483 55.0 0.00 0.00 0.00 2.50 F
2079 2858 0.178068 TGGAGCTTCCGCAGTATTCC 59.822 55.0 0.00 0.00 40.17 3.01 F
3364 4244 0.096976 CAATGTCGATCGTTGGGCAC 59.903 55.0 15.94 5.18 38.85 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1948 2727 0.033601 TGGTTGAGGGCACAAGTTGT 60.034 50.0 1.64 1.64 0.00 3.32 R
2427 3219 0.388649 GTACAGTCAGCAGTGTCGGG 60.389 60.0 0.00 0.00 37.39 5.14 R
3723 4609 0.035056 AACTCATGGGCACTAGCACC 60.035 55.0 0.00 0.00 46.13 5.01 R
4476 5441 0.106619 GCCCGAGTTCTCCTCTCCTA 60.107 60.0 0.00 0.00 38.11 2.94 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 2.987547 CACTGGCTGGCCTGTTGG 60.988 66.667 18.99 7.73 44.20 3.77
120 142 3.708220 GACGCCTCCTCTTGCTCCG 62.708 68.421 0.00 0.00 0.00 4.63
122 144 4.847444 GCCTCCTCTTGCTCCGCC 62.847 72.222 0.00 0.00 0.00 6.13
149 180 0.035056 CGTCCCTGGCCTTCTTCATT 60.035 55.000 3.32 0.00 0.00 2.57
166 197 1.948834 CATTATGAGCATGTTCCGCCA 59.051 47.619 7.13 0.00 0.00 5.69
211 242 1.271856 TCAACATCGGCCTTCCACTA 58.728 50.000 0.00 0.00 0.00 2.74
333 367 4.573950 GCATGGCGGGCGGATTTG 62.574 66.667 0.00 0.00 0.00 2.32
334 368 3.903282 CATGGCGGGCGGATTTGG 61.903 66.667 0.00 0.00 0.00 3.28
347 388 1.063717 GGATTTGGGGAGAGAATGGCA 60.064 52.381 0.00 0.00 0.00 4.92
390 434 0.991920 GACACTGGGGAAATGGAGGA 59.008 55.000 0.00 0.00 0.00 3.71
408 453 2.176148 AGGAAAAGGGGGAAGAAAACGA 59.824 45.455 0.00 0.00 0.00 3.85
418 463 2.161012 GGAAGAAAACGACGGGAAATCC 59.839 50.000 0.00 0.00 0.00 3.01
509 568 0.537828 GGCTTGGGTTCACCGGTTAA 60.538 55.000 2.97 0.00 44.64 2.01
510 569 1.320507 GCTTGGGTTCACCGGTTAAA 58.679 50.000 2.97 0.00 44.64 1.52
511 570 1.001048 GCTTGGGTTCACCGGTTAAAC 60.001 52.381 17.58 17.58 44.64 2.01
512 571 1.264826 CTTGGGTTCACCGGTTAAACG 59.735 52.381 18.65 5.77 44.64 3.60
513 572 0.467384 TGGGTTCACCGGTTAAACGA 59.533 50.000 16.00 9.85 44.64 3.85
514 573 1.150827 GGGTTCACCGGTTAAACGAG 58.849 55.000 16.00 7.17 36.71 4.18
515 574 1.150827 GGTTCACCGGTTAAACGAGG 58.849 55.000 16.00 5.94 35.47 4.63
516 575 1.270252 GGTTCACCGGTTAAACGAGGA 60.270 52.381 16.00 8.45 35.47 3.71
517 576 2.613725 GGTTCACCGGTTAAACGAGGAT 60.614 50.000 16.00 0.00 35.47 3.24
518 577 2.660189 TCACCGGTTAAACGAGGATC 57.340 50.000 16.00 0.00 35.47 3.36
532 591 4.933064 GATCGAGGGGCGCGAGTG 62.933 72.222 12.10 0.00 39.20 3.51
542 601 3.656045 CGCGAGTGGGCCGTTTTT 61.656 61.111 0.00 0.00 0.00 1.94
601 660 4.224971 TGGGGTGGGGGAAGGGAA 62.225 66.667 0.00 0.00 0.00 3.97
602 661 3.347590 GGGGTGGGGGAAGGGAAG 61.348 72.222 0.00 0.00 0.00 3.46
603 662 2.534533 GGGTGGGGGAAGGGAAGT 60.535 66.667 0.00 0.00 0.00 3.01
604 663 2.763902 GGTGGGGGAAGGGAAGTG 59.236 66.667 0.00 0.00 0.00 3.16
605 664 1.850755 GGTGGGGGAAGGGAAGTGA 60.851 63.158 0.00 0.00 0.00 3.41
606 665 1.432023 GGTGGGGGAAGGGAAGTGAA 61.432 60.000 0.00 0.00 0.00 3.18
607 666 0.038310 GTGGGGGAAGGGAAGTGAAG 59.962 60.000 0.00 0.00 0.00 3.02
608 667 0.402861 TGGGGGAAGGGAAGTGAAGT 60.403 55.000 0.00 0.00 0.00 3.01
609 668 0.038310 GGGGGAAGGGAAGTGAAGTG 59.962 60.000 0.00 0.00 0.00 3.16
610 669 1.064825 GGGGAAGGGAAGTGAAGTGA 58.935 55.000 0.00 0.00 0.00 3.41
611 670 1.423921 GGGGAAGGGAAGTGAAGTGAA 59.576 52.381 0.00 0.00 0.00 3.18
612 671 2.553247 GGGGAAGGGAAGTGAAGTGAAG 60.553 54.545 0.00 0.00 0.00 3.02
613 672 2.372172 GGGAAGGGAAGTGAAGTGAAGA 59.628 50.000 0.00 0.00 0.00 2.87
614 673 3.009584 GGGAAGGGAAGTGAAGTGAAGAT 59.990 47.826 0.00 0.00 0.00 2.40
615 674 4.006319 GGAAGGGAAGTGAAGTGAAGATG 58.994 47.826 0.00 0.00 0.00 2.90
616 675 3.064900 AGGGAAGTGAAGTGAAGATGC 57.935 47.619 0.00 0.00 0.00 3.91
617 676 2.641815 AGGGAAGTGAAGTGAAGATGCT 59.358 45.455 0.00 0.00 0.00 3.79
658 717 6.977502 CAGTCTGACACAGGAGTAGAATAATG 59.022 42.308 10.88 0.00 31.51 1.90
687 746 1.651240 GCACGCTGCATGAGACCATT 61.651 55.000 0.00 0.00 44.26 3.16
690 749 2.009774 ACGCTGCATGAGACCATTAAC 58.990 47.619 0.00 0.00 0.00 2.01
691 750 2.009051 CGCTGCATGAGACCATTAACA 58.991 47.619 0.00 0.00 0.00 2.41
692 751 2.615447 CGCTGCATGAGACCATTAACAT 59.385 45.455 0.00 0.00 0.00 2.71
693 752 3.547413 CGCTGCATGAGACCATTAACATG 60.547 47.826 0.00 0.00 41.72 3.21
758 819 3.645660 TTCCCATCCTGCCACGCA 61.646 61.111 0.00 0.00 36.92 5.24
786 1511 5.168569 CAACATCAGGTAGTACGACAACAT 58.831 41.667 8.44 0.00 0.00 2.71
806 1531 0.746563 CGTGGGCCCGTCAATACATT 60.747 55.000 19.37 0.00 0.00 2.71
811 1536 0.865769 GCCCGTCAATACATTAGGCG 59.134 55.000 0.00 0.00 0.00 5.52
959 1698 4.222847 GCGCCCGGCTAGCTACTT 62.223 66.667 15.72 0.00 39.11 2.24
960 1699 2.853290 GCGCCCGGCTAGCTACTTA 61.853 63.158 15.72 0.00 39.11 2.24
962 1701 1.453762 CGCCCGGCTAGCTACTTAGT 61.454 60.000 15.72 0.00 0.00 2.24
963 1702 0.032267 GCCCGGCTAGCTACTTAGTG 59.968 60.000 15.72 0.00 0.00 2.74
975 1714 6.332976 AGCTACTTAGTGGTACCTACCTAA 57.667 41.667 14.36 14.44 46.58 2.69
1177 1916 0.517316 CTTGCTCGCCAACAGGTAAC 59.483 55.000 0.00 0.00 0.00 2.50
1234 1999 2.609459 CACTTCATAGACATCCGTTGGC 59.391 50.000 0.00 0.00 0.00 4.52
1236 2001 0.821517 TCATAGACATCCGTTGGCGT 59.178 50.000 0.00 0.00 38.94 5.68
1237 2002 2.025898 TCATAGACATCCGTTGGCGTA 58.974 47.619 0.00 0.00 38.94 4.42
1238 2003 2.427812 TCATAGACATCCGTTGGCGTAA 59.572 45.455 0.00 0.00 38.94 3.18
1240 2005 2.396590 AGACATCCGTTGGCGTAAAT 57.603 45.000 0.00 0.00 38.94 1.40
1241 2006 3.530265 AGACATCCGTTGGCGTAAATA 57.470 42.857 0.00 0.00 38.94 1.40
1242 2007 3.864243 AGACATCCGTTGGCGTAAATAA 58.136 40.909 0.00 0.00 38.94 1.40
1243 2008 4.255301 AGACATCCGTTGGCGTAAATAAA 58.745 39.130 0.00 0.00 38.94 1.40
1245 2010 5.355910 AGACATCCGTTGGCGTAAATAAATT 59.644 36.000 0.00 0.00 38.94 1.82
1247 2012 5.106078 ACATCCGTTGGCGTAAATAAATTGT 60.106 36.000 0.00 0.00 36.15 2.71
1456 2224 9.383519 GTTTACATCACTGATCATTTCTTCCTA 57.616 33.333 0.00 0.00 0.00 2.94
1506 2276 5.182487 TGGTGTGTATATCTGCAACGAATT 58.818 37.500 0.00 0.00 0.00 2.17
1557 2327 1.533711 CCAAGGCATCTACCTGGGG 59.466 63.158 0.00 0.00 46.22 4.96
1676 2451 1.550072 AGTAAGCCGGCATTGCATTTT 59.450 42.857 31.54 14.07 0.00 1.82
1700 2475 3.673746 CACATCGTGTGTTCACAGTTT 57.326 42.857 5.85 0.00 43.08 2.66
1706 2481 3.802139 TCGTGTGTTCACAGTTTCTCATC 59.198 43.478 5.85 0.00 44.02 2.92
1744 2519 8.055279 TCATCTGTGGTCTAAAAATGAAATCC 57.945 34.615 0.00 0.00 0.00 3.01
1900 2679 9.179909 CAGTATATGTAGGTAAGGTAGATCCAG 57.820 40.741 0.00 0.00 39.02 3.86
1904 2683 6.337185 TGTAGGTAAGGTAGATCCAGAGAA 57.663 41.667 0.00 0.00 39.02 2.87
1905 2684 6.923670 TGTAGGTAAGGTAGATCCAGAGAAT 58.076 40.000 0.00 0.00 39.02 2.40
1906 2685 8.053776 TGTAGGTAAGGTAGATCCAGAGAATA 57.946 38.462 0.00 0.00 39.02 1.75
1907 2686 8.679725 TGTAGGTAAGGTAGATCCAGAGAATAT 58.320 37.037 0.00 0.00 39.02 1.28
1948 2727 5.472137 GGACAATAAACTGTGGCTAACAAGA 59.528 40.000 0.00 0.00 38.67 3.02
1996 2775 5.514274 AATCCAATTTTGTCAGTGTTCGT 57.486 34.783 0.00 0.00 0.00 3.85
2005 2784 6.795098 TTTGTCAGTGTTCGTGCTTATAAT 57.205 33.333 0.00 0.00 0.00 1.28
2006 2785 5.778161 TGTCAGTGTTCGTGCTTATAATG 57.222 39.130 0.00 0.00 0.00 1.90
2007 2786 4.629634 TGTCAGTGTTCGTGCTTATAATGG 59.370 41.667 0.00 0.00 0.00 3.16
2049 2828 0.604511 CATGCCTGAGCTGTGTGACA 60.605 55.000 0.00 0.00 40.80 3.58
2068 2847 1.865970 CAGATCGATGCTTGGAGCTTC 59.134 52.381 0.54 3.90 42.97 3.86
2079 2858 0.178068 TGGAGCTTCCGCAGTATTCC 59.822 55.000 0.00 0.00 40.17 3.01
2179 2958 4.867047 GTGTTCATCATCCTCTGTGTGTAG 59.133 45.833 0.00 0.00 0.00 2.74
2180 2959 4.528206 TGTTCATCATCCTCTGTGTGTAGT 59.472 41.667 0.00 0.00 0.00 2.73
2181 2960 4.725790 TCATCATCCTCTGTGTGTAGTG 57.274 45.455 0.00 0.00 0.00 2.74
2182 2961 4.089361 TCATCATCCTCTGTGTGTAGTGT 58.911 43.478 0.00 0.00 0.00 3.55
2183 2962 5.261216 TCATCATCCTCTGTGTGTAGTGTA 58.739 41.667 0.00 0.00 0.00 2.90
2198 2977 5.046087 GTGTAGTGTAGGTTACCTCCCAATT 60.046 44.000 7.39 1.41 34.61 2.32
2222 3001 1.080366 TGGTGAACGACGATTCCCG 60.080 57.895 0.00 0.00 45.44 5.14
2261 3040 3.206150 GTGCTCTTCCTGTTTCTGTCAA 58.794 45.455 0.00 0.00 0.00 3.18
2296 3075 2.926200 CGTGCAGATCGAACATTCTCTT 59.074 45.455 0.00 0.00 0.00 2.85
2297 3076 3.000277 CGTGCAGATCGAACATTCTCTTC 60.000 47.826 0.00 0.00 0.00 2.87
2298 3077 4.180057 GTGCAGATCGAACATTCTCTTCT 58.820 43.478 0.00 0.00 0.00 2.85
2299 3078 4.267452 GTGCAGATCGAACATTCTCTTCTC 59.733 45.833 0.00 0.00 0.00 2.87
2300 3079 4.159321 TGCAGATCGAACATTCTCTTCTCT 59.841 41.667 0.00 0.00 0.00 3.10
2301 3080 4.503734 GCAGATCGAACATTCTCTTCTCTG 59.496 45.833 0.00 0.00 0.00 3.35
2302 3081 5.649557 CAGATCGAACATTCTCTTCTCTGT 58.350 41.667 0.00 0.00 0.00 3.41
2304 3083 7.254137 CAGATCGAACATTCTCTTCTCTGTAA 58.746 38.462 0.00 0.00 0.00 2.41
2306 3085 7.757624 AGATCGAACATTCTCTTCTCTGTAAAC 59.242 37.037 0.00 0.00 0.00 2.01
2310 3089 7.116948 CGAACATTCTCTTCTCTGTAAACACAT 59.883 37.037 0.00 0.00 0.00 3.21
2311 3090 7.664082 ACATTCTCTTCTCTGTAAACACATG 57.336 36.000 0.00 0.00 0.00 3.21
2312 3091 6.652481 ACATTCTCTTCTCTGTAAACACATGG 59.348 38.462 0.00 0.00 0.00 3.66
2313 3092 6.419484 TTCTCTTCTCTGTAAACACATGGA 57.581 37.500 0.00 0.00 0.00 3.41
2314 3093 6.419484 TCTCTTCTCTGTAAACACATGGAA 57.581 37.500 0.00 0.00 0.00 3.53
2315 3094 7.009179 TCTCTTCTCTGTAAACACATGGAAT 57.991 36.000 0.00 0.00 0.00 3.01
2330 3122 6.897413 ACACATGGAATAGGGCTAAAAGATTT 59.103 34.615 0.00 0.00 0.00 2.17
2339 3131 8.800515 ATAGGGCTAAAAGATTTAGGTCTAGT 57.199 34.615 10.83 0.00 0.00 2.57
2344 3136 9.262358 GGCTAAAAGATTTAGGTCTAGTATGTG 57.738 37.037 10.83 0.00 0.00 3.21
2359 3151 9.431887 GTCTAGTATGTGTCTTATGTTCCAAAA 57.568 33.333 0.00 0.00 0.00 2.44
2362 3154 7.538575 AGTATGTGTCTTATGTTCCAAAATGC 58.461 34.615 0.00 0.00 0.00 3.56
2365 3157 7.144722 TGTGTCTTATGTTCCAAAATGCTAG 57.855 36.000 0.00 0.00 0.00 3.42
2366 3158 6.939730 TGTGTCTTATGTTCCAAAATGCTAGA 59.060 34.615 0.00 0.00 0.00 2.43
2370 3162 9.860898 GTCTTATGTTCCAAAATGCTAGAAAAT 57.139 29.630 0.00 0.00 0.00 1.82
2416 3208 8.208224 TGTAAGGAGAATGACAAGTAACAGAAA 58.792 33.333 0.00 0.00 0.00 2.52
2426 3218 7.386059 TGACAAGTAACAGAAATCATCTAGCA 58.614 34.615 0.00 0.00 36.32 3.49
2427 3219 7.331934 TGACAAGTAACAGAAATCATCTAGCAC 59.668 37.037 0.00 0.00 36.32 4.40
2428 3220 6.595716 ACAAGTAACAGAAATCATCTAGCACC 59.404 38.462 0.00 0.00 36.32 5.01
2429 3221 5.675538 AGTAACAGAAATCATCTAGCACCC 58.324 41.667 0.00 0.00 36.32 4.61
2430 3222 3.185246 ACAGAAATCATCTAGCACCCG 57.815 47.619 0.00 0.00 36.32 5.28
2431 3223 2.766263 ACAGAAATCATCTAGCACCCGA 59.234 45.455 0.00 0.00 36.32 5.14
2433 3225 2.766263 AGAAATCATCTAGCACCCGACA 59.234 45.455 0.00 0.00 36.32 4.35
2437 3229 0.807667 CATCTAGCACCCGACACTGC 60.808 60.000 0.00 0.00 0.00 4.40
2439 3231 1.446792 CTAGCACCCGACACTGCTG 60.447 63.158 2.39 0.00 43.69 4.41
2440 3232 1.877576 CTAGCACCCGACACTGCTGA 61.878 60.000 2.39 0.00 43.69 4.26
2441 3233 2.154798 TAGCACCCGACACTGCTGAC 62.155 60.000 2.39 0.00 43.69 3.51
2443 3235 1.665916 CACCCGACACTGCTGACTG 60.666 63.158 0.00 0.00 0.00 3.51
2451 3283 3.304458 CGACACTGCTGACTGTACTACAA 60.304 47.826 0.00 0.00 0.00 2.41
2453 3285 5.018539 ACACTGCTGACTGTACTACAAAA 57.981 39.130 0.00 0.00 0.00 2.44
2460 3292 5.796935 GCTGACTGTACTACAAAATGCAATG 59.203 40.000 0.00 0.00 0.00 2.82
2485 3317 2.933056 GCTGTCTTTCTAGGACACCAGC 60.933 54.545 8.24 8.24 38.57 4.85
2529 3361 4.217159 GGGCTACGTACGGGGCAG 62.217 72.222 27.58 17.21 0.00 4.85
2541 3373 0.102844 CGGGGCAGCATTATTTGTGG 59.897 55.000 0.00 0.00 0.00 4.17
2545 3377 2.529151 GGCAGCATTATTTGTGGAACG 58.471 47.619 0.00 0.00 42.39 3.95
2549 3381 3.853671 CAGCATTATTTGTGGAACGCTTC 59.146 43.478 0.00 0.00 42.39 3.86
2553 3385 1.241315 ATTTGTGGAACGCTTCGGGG 61.241 55.000 0.00 0.00 42.39 5.73
2560 3392 0.806241 GAACGCTTCGGGGCAAAATA 59.194 50.000 0.00 0.00 0.00 1.40
2576 3408 7.494298 GGGGCAAAATACAAATAATTGGTACTG 59.506 37.037 0.00 0.00 41.01 2.74
2587 3425 2.676632 TTGGTACTGTCACACGTTGT 57.323 45.000 0.00 0.00 0.00 3.32
2595 3433 5.190992 ACTGTCACACGTTGTCACTTATA 57.809 39.130 0.00 0.00 0.00 0.98
2599 3437 6.679843 TGTCACACGTTGTCACTTATATACA 58.320 36.000 0.00 0.00 0.00 2.29
2604 3442 7.008357 CACACGTTGTCACTTATATACACTCTG 59.992 40.741 0.00 0.00 0.00 3.35
2617 3455 3.674528 ACACTCTGTTCTCCATCACTG 57.325 47.619 0.00 0.00 0.00 3.66
2620 3458 2.968574 ACTCTGTTCTCCATCACTGTGT 59.031 45.455 7.79 0.00 0.00 3.72
2621 3459 4.021981 CACTCTGTTCTCCATCACTGTGTA 60.022 45.833 7.79 0.00 0.00 2.90
2624 3462 4.772100 TCTGTTCTCCATCACTGTGTATGA 59.228 41.667 16.56 8.12 0.00 2.15
2625 3463 5.077134 TGTTCTCCATCACTGTGTATGAG 57.923 43.478 16.56 14.88 0.00 2.90
2626 3464 4.528206 TGTTCTCCATCACTGTGTATGAGT 59.472 41.667 16.56 0.00 0.00 3.41
2629 3467 4.158579 TCTCCATCACTGTGTATGAGTGTC 59.841 45.833 16.56 0.00 41.43 3.67
2630 3468 3.831911 TCCATCACTGTGTATGAGTGTCA 59.168 43.478 16.56 0.00 41.43 3.58
2638 3478 1.001974 TGTATGAGTGTCAGTGGGCAC 59.998 52.381 9.69 9.69 35.98 5.01
2644 3484 1.344763 AGTGTCAGTGGGCACTCTAAC 59.655 52.381 13.16 0.00 41.58 2.34
2662 3502 4.775780 TCTAACTAAGTGGGCTTCTTGCTA 59.224 41.667 5.33 0.00 42.39 3.49
2663 3503 4.576330 AACTAAGTGGGCTTCTTGCTAT 57.424 40.909 5.33 0.00 42.39 2.97
2664 3504 5.693769 AACTAAGTGGGCTTCTTGCTATA 57.306 39.130 5.33 0.00 42.39 1.31
2665 3505 5.693769 ACTAAGTGGGCTTCTTGCTATAA 57.306 39.130 5.33 0.00 42.39 0.98
2666 3506 5.675538 ACTAAGTGGGCTTCTTGCTATAAG 58.324 41.667 5.33 0.00 42.39 1.73
2667 3507 4.576330 AAGTGGGCTTCTTGCTATAAGT 57.424 40.909 0.00 0.00 42.39 2.24
2668 3508 5.693769 AAGTGGGCTTCTTGCTATAAGTA 57.306 39.130 0.00 0.00 42.39 2.24
2669 3509 5.283457 AGTGGGCTTCTTGCTATAAGTAG 57.717 43.478 0.00 0.00 42.39 2.57
2670 3510 4.717280 AGTGGGCTTCTTGCTATAAGTAGT 59.283 41.667 0.00 0.00 42.39 2.73
2671 3511 5.897824 AGTGGGCTTCTTGCTATAAGTAGTA 59.102 40.000 0.00 0.00 42.39 1.82
2672 3512 5.984323 GTGGGCTTCTTGCTATAAGTAGTAC 59.016 44.000 0.00 0.00 42.39 2.73
2673 3513 5.897824 TGGGCTTCTTGCTATAAGTAGTACT 59.102 40.000 0.00 0.00 42.39 2.73
2674 3514 6.040616 TGGGCTTCTTGCTATAAGTAGTACTC 59.959 42.308 2.58 0.00 42.39 2.59
2675 3515 6.265876 GGGCTTCTTGCTATAAGTAGTACTCT 59.734 42.308 2.58 0.00 42.39 3.24
2676 3516 7.447853 GGGCTTCTTGCTATAAGTAGTACTCTA 59.552 40.741 2.58 0.00 42.39 2.43
2703 3555 9.511272 TTTAGGGAAGTATTTTACTGGAAACTC 57.489 33.333 0.00 0.00 39.39 3.01
2766 3618 3.452474 GCTCATGAACGCAGTCTAGAAT 58.548 45.455 0.00 0.00 45.00 2.40
2777 3629 3.379240 CAGTCTAGAATGCGTGGAGATG 58.621 50.000 7.33 0.00 0.00 2.90
2938 3790 0.737715 CTTCTTCTCAACTCGCCGGG 60.738 60.000 2.18 0.00 0.00 5.73
3018 3870 2.036992 CTCTGGCTCATCATACAGGTCC 59.963 54.545 0.00 0.00 0.00 4.46
3037 3889 1.670406 GTGTCAGTCAGCCAGCCAG 60.670 63.158 0.00 0.00 0.00 4.85
3041 3917 1.376942 CAGTCAGCCAGCCAGGAAG 60.377 63.158 0.00 0.00 41.22 3.46
3045 3921 0.619832 TCAGCCAGCCAGGAAGATCT 60.620 55.000 0.00 0.00 41.22 2.75
3046 3922 0.255318 CAGCCAGCCAGGAAGATCTT 59.745 55.000 7.95 7.95 41.22 2.40
3047 3923 0.545646 AGCCAGCCAGGAAGATCTTC 59.454 55.000 24.68 24.68 41.22 2.87
3048 3924 0.254178 GCCAGCCAGGAAGATCTTCA 59.746 55.000 31.29 0.00 41.20 3.02
3049 3925 1.746516 GCCAGCCAGGAAGATCTTCAG 60.747 57.143 31.29 23.34 41.20 3.02
3050 3926 1.134159 CCAGCCAGGAAGATCTTCAGG 60.134 57.143 31.29 29.82 41.20 3.86
3053 3929 1.561542 GCCAGGAAGATCTTCAGGGAA 59.438 52.381 32.60 0.00 41.20 3.97
3061 3937 3.794786 TCTTCAGGGAAGAGGAGCA 57.205 52.632 4.64 0.00 42.78 4.26
3062 3938 1.270907 TCTTCAGGGAAGAGGAGCAC 58.729 55.000 4.64 0.00 42.78 4.40
3063 3939 0.979665 CTTCAGGGAAGAGGAGCACA 59.020 55.000 0.00 0.00 41.71 4.57
3064 3940 1.349026 CTTCAGGGAAGAGGAGCACAA 59.651 52.381 0.00 0.00 41.71 3.33
3065 3941 1.661463 TCAGGGAAGAGGAGCACAAT 58.339 50.000 0.00 0.00 0.00 2.71
3066 3942 2.832838 TCAGGGAAGAGGAGCACAATA 58.167 47.619 0.00 0.00 0.00 1.90
3067 3943 3.387962 TCAGGGAAGAGGAGCACAATAT 58.612 45.455 0.00 0.00 0.00 1.28
3068 3944 3.782523 TCAGGGAAGAGGAGCACAATATT 59.217 43.478 0.00 0.00 0.00 1.28
3075 3951 6.261158 GGAAGAGGAGCACAATATTAACCTTC 59.739 42.308 0.00 0.00 0.00 3.46
3212 4088 1.066587 CTCGACGCCTGGAAGATCC 59.933 63.158 0.00 0.00 34.07 3.36
3253 4129 1.638467 CTGCATCTTCGCCGTAAGC 59.362 57.895 0.00 0.00 38.52 3.09
3263 4139 2.577785 GCCGTAAGCTCATCGTCGC 61.578 63.158 0.00 0.00 38.99 5.19
3289 4165 5.424757 CATCCACTTTCAGTATTTCCCGTA 58.575 41.667 0.00 0.00 0.00 4.02
3321 4197 0.593008 GTTTCCGCGGACAAACAACC 60.593 55.000 31.19 9.99 33.45 3.77
3364 4244 0.096976 CAATGTCGATCGTTGGGCAC 59.903 55.000 15.94 5.18 38.85 5.01
3586 4472 6.600388 TGCTGATCCTGCCATTTTATTACTA 58.400 36.000 5.52 0.00 0.00 1.82
3588 4474 6.712547 GCTGATCCTGCCATTTTATTACTACT 59.287 38.462 0.00 0.00 0.00 2.57
3589 4475 7.308229 GCTGATCCTGCCATTTTATTACTACTG 60.308 40.741 0.00 0.00 0.00 2.74
3590 4476 7.573710 TGATCCTGCCATTTTATTACTACTGT 58.426 34.615 0.00 0.00 0.00 3.55
3591 4477 8.710239 TGATCCTGCCATTTTATTACTACTGTA 58.290 33.333 0.00 0.00 0.00 2.74
3592 4478 8.904099 ATCCTGCCATTTTATTACTACTGTAC 57.096 34.615 0.00 0.00 0.00 2.90
3596 4482 8.415192 TGCCATTTTATTACTACTGTACTTCG 57.585 34.615 0.00 0.00 0.00 3.79
3597 4483 8.252417 TGCCATTTTATTACTACTGTACTTCGA 58.748 33.333 0.00 0.00 0.00 3.71
3598 4484 8.753175 GCCATTTTATTACTACTGTACTTCGAG 58.247 37.037 0.00 0.00 0.00 4.04
3605 4491 7.840342 TTACTACTGTACTTCGAGAACTAGG 57.160 40.000 0.00 0.00 0.00 3.02
3606 4492 4.635324 ACTACTGTACTTCGAGAACTAGGC 59.365 45.833 0.00 0.00 0.00 3.93
3608 4494 3.440872 ACTGTACTTCGAGAACTAGGCTG 59.559 47.826 0.00 0.00 0.00 4.85
3609 4495 3.418995 TGTACTTCGAGAACTAGGCTGT 58.581 45.455 0.00 0.00 0.00 4.40
3610 4496 4.582869 TGTACTTCGAGAACTAGGCTGTA 58.417 43.478 0.00 0.00 0.00 2.74
3611 4497 4.634883 TGTACTTCGAGAACTAGGCTGTAG 59.365 45.833 0.00 0.00 0.00 2.74
3612 4498 2.424246 ACTTCGAGAACTAGGCTGTAGC 59.576 50.000 0.00 0.00 41.14 3.58
3629 4515 2.187946 CCTACTGGCAAGGGAGCG 59.812 66.667 0.00 0.00 34.64 5.03
3630 4516 2.512515 CTACTGGCAAGGGAGCGC 60.513 66.667 0.00 0.00 34.64 5.92
3631 4517 3.315142 CTACTGGCAAGGGAGCGCA 62.315 63.158 11.47 0.00 34.64 6.09
3632 4518 3.315142 TACTGGCAAGGGAGCGCAG 62.315 63.158 11.47 0.00 38.18 5.18
3633 4519 4.711949 CTGGCAAGGGAGCGCAGT 62.712 66.667 11.47 0.00 34.64 4.40
3651 4537 2.743928 GGCGTCTCCAGCAACCAG 60.744 66.667 0.00 0.00 36.08 4.00
3652 4538 2.743928 GCGTCTCCAGCAACCAGG 60.744 66.667 0.00 0.00 34.19 4.45
3653 4539 2.046892 CGTCTCCAGCAACCAGGG 60.047 66.667 0.00 0.00 0.00 4.45
3654 4540 2.883828 CGTCTCCAGCAACCAGGGT 61.884 63.158 0.00 0.00 0.00 4.34
3656 4542 0.606673 GTCTCCAGCAACCAGGGTTC 60.607 60.000 0.00 0.00 36.00 3.62
3657 4543 1.672356 CTCCAGCAACCAGGGTTCG 60.672 63.158 0.00 0.00 36.00 3.95
3658 4544 2.111999 CTCCAGCAACCAGGGTTCGA 62.112 60.000 0.00 0.00 36.00 3.71
3659 4545 1.672356 CCAGCAACCAGGGTTCGAG 60.672 63.158 0.00 0.00 36.00 4.04
3660 4546 2.032681 AGCAACCAGGGTTCGAGC 59.967 61.111 0.00 2.37 36.00 5.03
3661 4547 3.056328 GCAACCAGGGTTCGAGCC 61.056 66.667 10.28 10.28 36.00 4.70
3662 4548 2.429930 CAACCAGGGTTCGAGCCA 59.570 61.111 20.67 0.00 38.48 4.75
3663 4549 1.966451 CAACCAGGGTTCGAGCCAC 60.966 63.158 20.67 9.47 38.48 5.01
3664 4550 3.530910 AACCAGGGTTCGAGCCACG 62.531 63.158 20.67 9.76 38.48 4.94
3665 4551 4.003788 CCAGGGTTCGAGCCACGT 62.004 66.667 20.67 0.71 43.13 4.49
3666 4552 2.432628 CAGGGTTCGAGCCACGTC 60.433 66.667 20.67 2.28 43.13 4.34
3687 4573 2.791655 GGGGACGAATTTCTGGTTTCT 58.208 47.619 0.00 0.00 0.00 2.52
3688 4574 2.747989 GGGGACGAATTTCTGGTTTCTC 59.252 50.000 0.00 0.00 0.00 2.87
3689 4575 3.408634 GGGACGAATTTCTGGTTTCTCA 58.591 45.455 0.00 0.00 0.00 3.27
3690 4576 3.188667 GGGACGAATTTCTGGTTTCTCAC 59.811 47.826 0.00 0.00 0.00 3.51
3691 4577 3.813166 GGACGAATTTCTGGTTTCTCACA 59.187 43.478 0.00 0.00 0.00 3.58
3692 4578 4.274950 GGACGAATTTCTGGTTTCTCACAA 59.725 41.667 0.00 0.00 0.00 3.33
3693 4579 5.424121 ACGAATTTCTGGTTTCTCACAAG 57.576 39.130 0.00 0.00 0.00 3.16
3694 4580 4.275936 ACGAATTTCTGGTTTCTCACAAGG 59.724 41.667 0.00 0.00 0.00 3.61
3695 4581 4.320494 CGAATTTCTGGTTTCTCACAAGGG 60.320 45.833 0.00 0.00 0.00 3.95
3696 4582 3.943671 TTTCTGGTTTCTCACAAGGGA 57.056 42.857 0.00 0.00 0.00 4.20
3697 4583 4.453480 TTTCTGGTTTCTCACAAGGGAT 57.547 40.909 0.00 0.00 0.00 3.85
3698 4584 3.423539 TCTGGTTTCTCACAAGGGATG 57.576 47.619 0.00 0.00 0.00 3.51
3699 4585 1.815003 CTGGTTTCTCACAAGGGATGC 59.185 52.381 0.00 0.00 0.00 3.91
3700 4586 1.425066 TGGTTTCTCACAAGGGATGCT 59.575 47.619 0.00 0.00 0.00 3.79
3701 4587 2.158475 TGGTTTCTCACAAGGGATGCTT 60.158 45.455 0.00 0.00 0.00 3.91
3702 4588 2.489722 GGTTTCTCACAAGGGATGCTTC 59.510 50.000 0.00 0.00 0.00 3.86
3703 4589 3.416156 GTTTCTCACAAGGGATGCTTCT 58.584 45.455 0.00 0.00 0.00 2.85
3704 4590 3.340814 TTCTCACAAGGGATGCTTCTC 57.659 47.619 0.00 0.00 0.00 2.87
3705 4591 1.556911 TCTCACAAGGGATGCTTCTCC 59.443 52.381 0.00 0.00 34.31 3.71
3706 4592 1.558756 CTCACAAGGGATGCTTCTCCT 59.441 52.381 0.00 0.25 35.50 3.69
3707 4593 2.768527 CTCACAAGGGATGCTTCTCCTA 59.231 50.000 9.18 0.00 35.50 2.94
3708 4594 3.387962 TCACAAGGGATGCTTCTCCTAT 58.612 45.455 9.18 1.24 35.50 2.57
3709 4595 4.556697 TCACAAGGGATGCTTCTCCTATA 58.443 43.478 9.18 0.00 35.50 1.31
3710 4596 5.158141 TCACAAGGGATGCTTCTCCTATAT 58.842 41.667 9.18 0.00 35.50 0.86
3711 4597 5.247110 TCACAAGGGATGCTTCTCCTATATC 59.753 44.000 9.18 0.00 35.50 1.63
3712 4598 5.012458 CACAAGGGATGCTTCTCCTATATCA 59.988 44.000 9.18 0.00 35.50 2.15
3713 4599 5.608437 ACAAGGGATGCTTCTCCTATATCAA 59.392 40.000 9.18 0.00 35.50 2.57
3714 4600 6.274200 ACAAGGGATGCTTCTCCTATATCAAT 59.726 38.462 9.18 0.00 35.50 2.57
3715 4601 7.459125 ACAAGGGATGCTTCTCCTATATCAATA 59.541 37.037 9.18 0.00 35.50 1.90
3716 4602 8.324306 CAAGGGATGCTTCTCCTATATCAATAA 58.676 37.037 9.18 0.00 35.50 1.40
3717 4603 8.454859 AGGGATGCTTCTCCTATATCAATAAA 57.545 34.615 7.56 0.00 35.50 1.40
3718 4604 8.325046 AGGGATGCTTCTCCTATATCAATAAAC 58.675 37.037 7.56 0.00 35.50 2.01
3719 4605 7.554476 GGGATGCTTCTCCTATATCAATAAACC 59.446 40.741 0.00 0.00 35.50 3.27
3720 4606 8.103305 GGATGCTTCTCCTATATCAATAAACCA 58.897 37.037 0.00 0.00 32.18 3.67
3721 4607 9.678260 GATGCTTCTCCTATATCAATAAACCAT 57.322 33.333 0.00 0.00 0.00 3.55
3722 4608 8.853077 TGCTTCTCCTATATCAATAAACCATG 57.147 34.615 0.00 0.00 0.00 3.66
3723 4609 7.884877 TGCTTCTCCTATATCAATAAACCATGG 59.115 37.037 11.19 11.19 0.00 3.66
3724 4610 7.337942 GCTTCTCCTATATCAATAAACCATGGG 59.662 40.741 18.09 0.00 0.00 4.00
3725 4611 7.888514 TCTCCTATATCAATAAACCATGGGT 57.111 36.000 18.09 6.57 37.65 4.51
3726 4612 7.689299 TCTCCTATATCAATAAACCATGGGTG 58.311 38.462 18.09 6.03 35.34 4.61
3727 4613 6.245408 TCCTATATCAATAAACCATGGGTGC 58.755 40.000 18.09 0.00 35.34 5.01
3728 4614 6.045459 TCCTATATCAATAAACCATGGGTGCT 59.955 38.462 18.09 0.00 35.34 4.40
3729 4615 7.238723 TCCTATATCAATAAACCATGGGTGCTA 59.761 37.037 18.09 0.00 35.34 3.49
3730 4616 7.554118 CCTATATCAATAAACCATGGGTGCTAG 59.446 40.741 18.09 1.14 35.34 3.42
3731 4617 4.584638 TCAATAAACCATGGGTGCTAGT 57.415 40.909 18.09 0.00 35.34 2.57
3732 4618 4.269183 TCAATAAACCATGGGTGCTAGTG 58.731 43.478 18.09 9.64 35.34 2.74
3733 4619 2.122783 TAAACCATGGGTGCTAGTGC 57.877 50.000 18.09 0.00 35.34 4.40
3734 4620 0.611896 AAACCATGGGTGCTAGTGCC 60.612 55.000 18.09 0.00 35.34 5.01
3735 4621 2.124151 CCATGGGTGCTAGTGCCC 60.124 66.667 2.85 14.48 45.04 5.36
3739 4625 2.998097 GGGTGCTAGTGCCCATGA 59.002 61.111 15.91 0.00 44.23 3.07
3740 4626 1.153086 GGGTGCTAGTGCCCATGAG 60.153 63.158 15.91 0.00 44.23 2.90
3741 4627 1.604378 GGTGCTAGTGCCCATGAGT 59.396 57.895 0.00 0.00 38.71 3.41
3742 4628 0.035056 GGTGCTAGTGCCCATGAGTT 60.035 55.000 0.00 0.00 38.71 3.01
3743 4629 1.614317 GGTGCTAGTGCCCATGAGTTT 60.614 52.381 0.00 0.00 38.71 2.66
3744 4630 1.740025 GTGCTAGTGCCCATGAGTTTC 59.260 52.381 0.00 0.00 38.71 2.78
3745 4631 1.350684 TGCTAGTGCCCATGAGTTTCA 59.649 47.619 0.00 0.00 38.71 2.69
3746 4632 2.025981 TGCTAGTGCCCATGAGTTTCAT 60.026 45.455 0.00 0.00 36.49 2.57
3747 4633 2.615912 GCTAGTGCCCATGAGTTTCATC 59.384 50.000 0.00 0.00 34.28 2.92
3748 4634 3.683847 GCTAGTGCCCATGAGTTTCATCT 60.684 47.826 0.00 0.00 34.28 2.90
3749 4635 3.446442 AGTGCCCATGAGTTTCATCTT 57.554 42.857 0.00 0.00 34.28 2.40
3750 4636 3.771216 AGTGCCCATGAGTTTCATCTTT 58.229 40.909 0.00 0.00 34.28 2.52
3751 4637 4.154942 AGTGCCCATGAGTTTCATCTTTT 58.845 39.130 0.00 0.00 34.28 2.27
3752 4638 4.590222 AGTGCCCATGAGTTTCATCTTTTT 59.410 37.500 0.00 0.00 34.28 1.94
3753 4639 5.774690 AGTGCCCATGAGTTTCATCTTTTTA 59.225 36.000 0.00 0.00 34.28 1.52
3754 4640 5.863935 GTGCCCATGAGTTTCATCTTTTTAC 59.136 40.000 0.00 0.00 34.28 2.01
3755 4641 5.774690 TGCCCATGAGTTTCATCTTTTTACT 59.225 36.000 0.00 0.00 34.28 2.24
3756 4642 6.945435 TGCCCATGAGTTTCATCTTTTTACTA 59.055 34.615 0.00 0.00 34.28 1.82
3757 4643 7.094377 TGCCCATGAGTTTCATCTTTTTACTAC 60.094 37.037 0.00 0.00 34.28 2.73
3758 4644 7.121315 GCCCATGAGTTTCATCTTTTTACTACT 59.879 37.037 0.00 0.00 34.28 2.57
3775 4661 9.971922 TTTTACTACTGTACTTCTCAACTTACC 57.028 33.333 0.00 0.00 0.00 2.85
3778 4664 8.564509 ACTACTGTACTTCTCAACTTACCTAG 57.435 38.462 0.00 0.00 0.00 3.02
3825 4714 2.435234 GGTGCATTCGCCGTGGTA 60.435 61.111 0.00 0.00 37.32 3.25
3862 4751 4.536526 TGTGGGGCAAAGCAGGCA 62.537 61.111 0.00 0.00 35.46 4.75
3924 4813 0.616111 AGAAGACATGGTCGGGCTCT 60.616 55.000 0.00 0.00 37.67 4.09
3956 4845 2.285154 CGGAAAGTACGATCACCGC 58.715 57.895 0.00 0.00 43.32 5.68
3978 4867 1.078143 GCTCCTGGCGGACAAGAAT 60.078 57.895 0.00 0.00 34.92 2.40
3980 4869 0.462759 CTCCTGGCGGACAAGAATCC 60.463 60.000 0.00 0.00 34.92 3.01
3993 4882 5.450137 GGACAAGAATCCGATCGAGAAGTAA 60.450 44.000 18.66 0.00 0.00 2.24
4013 4906 7.158099 AGTAATGGCTCTACAATTTTGGAAC 57.842 36.000 0.00 0.00 0.00 3.62
4035 4928 2.305343 AGCCAGTGATCTTTCTCAGCTT 59.695 45.455 0.00 0.00 28.67 3.74
4042 4935 4.505922 GTGATCTTTCTCAGCTTATGGTCG 59.494 45.833 0.00 0.00 0.00 4.79
4051 4944 2.009774 AGCTTATGGTCGCATGTGTTC 58.990 47.619 6.09 1.19 0.00 3.18
4059 4953 1.391485 GTCGCATGTGTTCTGTAGCTG 59.609 52.381 6.09 0.00 0.00 4.24
4062 4956 1.741706 GCATGTGTTCTGTAGCTGCAT 59.258 47.619 4.51 0.00 0.00 3.96
4073 4967 3.976169 TGTAGCTGCATGGTTGTTTTTC 58.024 40.909 0.00 0.00 0.00 2.29
4101 4995 1.893801 AGTACTAGTGTGCTGGTGGAC 59.106 52.381 5.39 0.00 37.73 4.02
4112 5006 2.117206 GGTGGACCATGTGGCCAA 59.883 61.111 7.24 0.00 40.99 4.52
4114 5008 2.283101 TGGACCATGTGGCCAAGC 60.283 61.111 7.24 0.00 38.06 4.01
4142 5040 2.413796 TGTCGCCGCTAATGTACAAAAG 59.586 45.455 0.00 1.20 0.00 2.27
4149 5047 6.142817 GCCGCTAATGTACAAAAGATAATGG 58.857 40.000 0.00 0.52 0.00 3.16
4195 5093 4.102681 CGAATTTAAGATGAGGTAGGGGGT 59.897 45.833 0.00 0.00 0.00 4.95
4196 5094 5.377478 GAATTTAAGATGAGGTAGGGGGTG 58.623 45.833 0.00 0.00 0.00 4.61
4197 5095 2.489528 TAAGATGAGGTAGGGGGTGG 57.510 55.000 0.00 0.00 0.00 4.61
4198 5096 0.327576 AAGATGAGGTAGGGGGTGGG 60.328 60.000 0.00 0.00 0.00 4.61
4199 5097 1.770518 GATGAGGTAGGGGGTGGGG 60.771 68.421 0.00 0.00 0.00 4.96
4200 5098 3.362946 ATGAGGTAGGGGGTGGGGG 62.363 68.421 0.00 0.00 0.00 5.40
4223 5121 1.201987 CGTGCTTACCAATTACGGCAC 60.202 52.381 0.00 0.00 44.16 5.01
4257 5160 1.514003 TTCGGTGCGCTACAATCAAA 58.486 45.000 9.73 0.00 0.00 2.69
4258 5161 1.732941 TCGGTGCGCTACAATCAAAT 58.267 45.000 9.73 0.00 0.00 2.32
4259 5162 1.663643 TCGGTGCGCTACAATCAAATC 59.336 47.619 9.73 0.00 0.00 2.17
4260 5163 1.592110 CGGTGCGCTACAATCAAATCG 60.592 52.381 9.73 0.00 0.00 3.34
4261 5164 1.396996 GGTGCGCTACAATCAAATCGT 59.603 47.619 9.73 0.00 0.00 3.73
4262 5165 2.605818 GGTGCGCTACAATCAAATCGTA 59.394 45.455 9.73 0.00 0.00 3.43
4306 5247 1.789464 GCTTCTTGACTGACACTGACG 59.211 52.381 0.00 0.00 0.00 4.35
4344 5303 2.936919 TGTGCATTTCTCCAGTCAGT 57.063 45.000 0.00 0.00 0.00 3.41
4349 5308 5.046663 TGTGCATTTCTCCAGTCAGTATGTA 60.047 40.000 0.00 0.00 37.40 2.29
4350 5309 6.051717 GTGCATTTCTCCAGTCAGTATGTAT 58.948 40.000 0.00 0.00 37.40 2.29
4351 5310 6.018425 GTGCATTTCTCCAGTCAGTATGTATG 60.018 42.308 0.00 0.00 37.40 2.39
4352 5311 6.051717 GCATTTCTCCAGTCAGTATGTATGT 58.948 40.000 0.00 0.00 37.40 2.29
4353 5312 6.540189 GCATTTCTCCAGTCAGTATGTATGTT 59.460 38.462 0.00 0.00 37.40 2.71
4354 5313 7.254590 GCATTTCTCCAGTCAGTATGTATGTTC 60.255 40.741 0.00 0.00 37.40 3.18
4355 5314 6.850752 TTCTCCAGTCAGTATGTATGTTCA 57.149 37.500 0.00 0.00 37.40 3.18
4356 5315 6.456795 TCTCCAGTCAGTATGTATGTTCAG 57.543 41.667 0.00 0.00 37.40 3.02
4357 5316 5.952347 TCTCCAGTCAGTATGTATGTTCAGT 59.048 40.000 0.00 0.00 37.40 3.41
4358 5317 6.095580 TCTCCAGTCAGTATGTATGTTCAGTC 59.904 42.308 0.00 0.00 37.40 3.51
4359 5318 5.952347 TCCAGTCAGTATGTATGTTCAGTCT 59.048 40.000 0.00 0.00 37.40 3.24
4360 5319 7.116736 TCCAGTCAGTATGTATGTTCAGTCTA 58.883 38.462 0.00 0.00 37.40 2.59
4361 5320 7.283354 TCCAGTCAGTATGTATGTTCAGTCTAG 59.717 40.741 0.00 0.00 37.40 2.43
4362 5321 7.421599 CAGTCAGTATGTATGTTCAGTCTAGG 58.578 42.308 0.00 0.00 37.40 3.02
4363 5322 6.039941 AGTCAGTATGTATGTTCAGTCTAGGC 59.960 42.308 0.00 0.00 37.40 3.93
4364 5323 5.891551 TCAGTATGTATGTTCAGTCTAGGCA 59.108 40.000 0.00 0.00 37.40 4.75
4365 5324 6.379988 TCAGTATGTATGTTCAGTCTAGGCAA 59.620 38.462 0.00 0.00 37.40 4.52
4366 5325 7.069950 TCAGTATGTATGTTCAGTCTAGGCAAT 59.930 37.037 0.00 0.00 37.40 3.56
4367 5326 8.360390 CAGTATGTATGTTCAGTCTAGGCAATA 58.640 37.037 0.00 0.00 0.00 1.90
4374 5333 4.327982 TCAGTCTAGGCAATAGTCATGC 57.672 45.455 0.00 0.00 43.08 4.06
4375 5334 3.963374 TCAGTCTAGGCAATAGTCATGCT 59.037 43.478 0.00 0.00 43.34 3.79
4380 5339 3.641434 AGGCAATAGTCATGCTGAACT 57.359 42.857 0.00 0.00 43.34 3.01
4392 5351 1.448540 CTGAACTAGTGCCAGGCGG 60.449 63.158 7.03 0.00 0.00 6.13
4476 5441 1.475751 CGCCAGCCAATTCAGGATAGT 60.476 52.381 0.00 0.00 0.00 2.12
4543 5509 0.326264 AGGGGAACATGAGTCACAGC 59.674 55.000 0.00 0.00 0.00 4.40
4550 5516 1.202639 ACATGAGTCACAGCACCGAAA 60.203 47.619 0.00 0.00 0.00 3.46
4556 5522 0.944386 TCACAGCACCGAAAAGAAGC 59.056 50.000 0.00 0.00 0.00 3.86
4564 5530 2.031682 CACCGAAAAGAAGCACAAGAGG 60.032 50.000 0.00 0.00 0.00 3.69
4606 5572 4.476361 GGCGAAAATTCCAAGCCG 57.524 55.556 0.00 0.00 38.28 5.52
4613 5585 1.384222 AAATTCCAAGCCGGGCGATC 61.384 55.000 14.39 0.00 34.36 3.69
4670 5642 4.355437 CGCTCAACTCTTTATCTCATCGT 58.645 43.478 0.00 0.00 0.00 3.73
4676 5648 6.602009 TCAACTCTTTATCTCATCGTCTGGTA 59.398 38.462 0.00 0.00 0.00 3.25
4677 5649 6.627395 ACTCTTTATCTCATCGTCTGGTAG 57.373 41.667 0.00 0.00 0.00 3.18
4678 5650 5.009210 ACTCTTTATCTCATCGTCTGGTAGC 59.991 44.000 0.00 0.00 0.00 3.58
4706 5679 1.281656 GACTGCAAAACCCGAACCG 59.718 57.895 0.00 0.00 0.00 4.44
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
74 76 1.814169 GATGACGAACCTTCCGCCC 60.814 63.158 0.00 0.00 0.00 6.13
149 180 0.541392 ACTGGCGGAACATGCTCATA 59.459 50.000 0.00 0.00 0.00 2.15
211 242 2.436646 CGGGCTTGTCGAATGCCT 60.437 61.111 19.43 0.00 45.45 4.75
291 325 1.271840 AAGAAGTATGCGCCCCCTCA 61.272 55.000 4.18 0.00 0.00 3.86
331 365 0.549902 TCCTGCCATTCTCTCCCCAA 60.550 55.000 0.00 0.00 0.00 4.12
333 367 1.835693 CTCCTGCCATTCTCTCCCC 59.164 63.158 0.00 0.00 0.00 4.81
334 368 1.148048 GCTCCTGCCATTCTCTCCC 59.852 63.158 0.00 0.00 0.00 4.30
347 388 4.722535 TTCTCCCCTGCCGCTCCT 62.723 66.667 0.00 0.00 0.00 3.69
390 434 1.951602 CGTCGTTTTCTTCCCCCTTTT 59.048 47.619 0.00 0.00 0.00 2.27
418 463 2.314647 ATTGTCAACGACACCGGCG 61.315 57.895 0.00 0.00 42.60 6.46
509 568 3.528370 CGCCCCTCGATCCTCGTT 61.528 66.667 0.00 0.00 41.35 3.85
515 574 4.933064 CACTCGCGCCCCTCGATC 62.933 72.222 0.00 0.00 41.67 3.69
525 584 3.656045 AAAAACGGCCCACTCGCG 61.656 61.111 0.00 0.00 0.00 5.87
584 643 4.224971 TTCCCTTCCCCCACCCCA 62.225 66.667 0.00 0.00 0.00 4.96
585 644 3.347590 CTTCCCTTCCCCCACCCC 61.348 72.222 0.00 0.00 0.00 4.95
586 645 2.534533 ACTTCCCTTCCCCCACCC 60.535 66.667 0.00 0.00 0.00 4.61
587 646 1.432023 TTCACTTCCCTTCCCCCACC 61.432 60.000 0.00 0.00 0.00 4.61
588 647 0.038310 CTTCACTTCCCTTCCCCCAC 59.962 60.000 0.00 0.00 0.00 4.61
589 648 0.402861 ACTTCACTTCCCTTCCCCCA 60.403 55.000 0.00 0.00 0.00 4.96
590 649 0.038310 CACTTCACTTCCCTTCCCCC 59.962 60.000 0.00 0.00 0.00 5.40
591 650 1.064825 TCACTTCACTTCCCTTCCCC 58.935 55.000 0.00 0.00 0.00 4.81
592 651 2.372172 TCTTCACTTCACTTCCCTTCCC 59.628 50.000 0.00 0.00 0.00 3.97
593 652 3.771577 TCTTCACTTCACTTCCCTTCC 57.228 47.619 0.00 0.00 0.00 3.46
594 653 3.438434 GCATCTTCACTTCACTTCCCTTC 59.562 47.826 0.00 0.00 0.00 3.46
595 654 3.073650 AGCATCTTCACTTCACTTCCCTT 59.926 43.478 0.00 0.00 0.00 3.95
596 655 2.641815 AGCATCTTCACTTCACTTCCCT 59.358 45.455 0.00 0.00 0.00 4.20
597 656 3.006247 GAGCATCTTCACTTCACTTCCC 58.994 50.000 0.00 0.00 0.00 3.97
658 717 1.298157 TGCAGCGTGCTTATGTGGAC 61.298 55.000 10.54 0.00 45.31 4.02
687 746 4.871933 TCTTGACTGCTGAGACATGTTA 57.128 40.909 0.00 0.00 0.00 2.41
690 749 4.454847 ACAAATCTTGACTGCTGAGACATG 59.545 41.667 0.00 0.00 0.00 3.21
691 750 4.649692 ACAAATCTTGACTGCTGAGACAT 58.350 39.130 0.00 0.00 0.00 3.06
692 751 4.060900 GACAAATCTTGACTGCTGAGACA 58.939 43.478 0.00 0.00 0.00 3.41
693 752 4.060900 TGACAAATCTTGACTGCTGAGAC 58.939 43.478 0.00 0.00 0.00 3.36
742 803 3.626996 CTTGCGTGGCAGGATGGGA 62.627 63.158 12.03 0.00 40.61 4.37
758 819 2.093658 CGTACTACCTGATGTTGGCCTT 60.094 50.000 3.32 0.00 0.00 4.35
768 829 3.752412 CGATGTTGTCGTACTACCTGA 57.248 47.619 0.00 0.00 45.19 3.86
786 1511 1.618876 ATGTATTGACGGGCCCACGA 61.619 55.000 24.92 15.47 37.61 4.35
806 1531 0.739462 CTTCGTTCATGTGCCGCCTA 60.739 55.000 0.00 0.00 0.00 3.93
811 1536 0.110056 CAGTGCTTCGTTCATGTGCC 60.110 55.000 0.00 0.00 0.00 5.01
963 1702 0.388294 CCGCTGCTTAGGTAGGTACC 59.612 60.000 2.73 2.73 46.82 3.34
1097 1836 3.124921 CGACGAACACCATGGGGC 61.125 66.667 15.93 0.00 37.90 5.80
1177 1916 3.221771 AGAGAGAGGGATCGATCTTGTG 58.778 50.000 23.96 0.00 0.00 3.33
1259 2024 5.320277 CCTCTTCCTGGAGAAAAGACAATT 58.680 41.667 0.00 0.00 35.52 2.32
1320 2085 1.228245 GAGGCCAAGAACACCAGCA 60.228 57.895 5.01 0.00 0.00 4.41
1506 2276 2.894240 GATTCGCCGTCGCCCTGTTA 62.894 60.000 0.00 0.00 35.26 2.41
1557 2327 3.706140 GTCGCCATGGACGATGAC 58.294 61.111 26.40 16.39 42.26 3.06
1640 2410 0.764890 TACTGCTTGCAGTTCCAGGT 59.235 50.000 29.37 9.62 36.68 4.00
1700 2475 6.038271 CAGATGATGAAACTTGCATGATGAGA 59.962 38.462 6.60 0.00 0.00 3.27
1706 2481 4.082408 ACCACAGATGATGAAACTTGCATG 60.082 41.667 0.00 0.00 0.00 4.06
1744 2519 3.807538 GCACACGCTCATGGCCTG 61.808 66.667 3.32 0.00 37.74 4.85
1765 2540 1.671328 TGACGCGAGAGATCTACAAGG 59.329 52.381 15.93 0.00 0.00 3.61
1873 2652 8.676020 TGGATCTACCTTACCTACATATACTGT 58.324 37.037 0.00 0.00 39.61 3.55
1874 2653 9.179909 CTGGATCTACCTTACCTACATATACTG 57.820 40.741 0.00 0.00 39.86 2.74
1875 2654 9.125255 TCTGGATCTACCTTACCTACATATACT 57.875 37.037 0.00 0.00 39.86 2.12
1878 2657 8.233349 TCTCTGGATCTACCTTACCTACATAT 57.767 38.462 0.00 0.00 39.86 1.78
1931 2710 4.270008 AGTTGTCTTGTTAGCCACAGTTT 58.730 39.130 0.00 0.00 36.48 2.66
1948 2727 0.033601 TGGTTGAGGGCACAAGTTGT 60.034 50.000 1.64 1.64 0.00 3.32
1996 2775 3.874543 CGCACTTACCACCATTATAAGCA 59.125 43.478 0.00 0.00 30.45 3.91
2005 2784 1.373435 CTTCCCGCACTTACCACCA 59.627 57.895 0.00 0.00 0.00 4.17
2006 2785 2.038837 GCTTCCCGCACTTACCACC 61.039 63.158 0.00 0.00 38.92 4.61
2007 2786 2.388232 CGCTTCCCGCACTTACCAC 61.388 63.158 0.00 0.00 39.08 4.16
2034 2813 1.735038 CGATCTGTCACACAGCTCAGG 60.735 57.143 7.95 0.00 45.54 3.86
2038 2817 1.738365 GCATCGATCTGTCACACAGCT 60.738 52.381 0.00 0.00 45.54 4.24
2049 2828 1.202627 GGAAGCTCCAAGCATCGATCT 60.203 52.381 0.00 0.00 45.56 2.75
2079 2858 0.459899 TACGTCTACCATGCAGGCAG 59.540 55.000 0.00 0.00 43.14 4.85
2179 2958 5.688814 ACTAATTGGGAGGTAACCTACAC 57.311 43.478 0.00 0.00 35.82 2.90
2180 2959 5.548836 ACAACTAATTGGGAGGTAACCTACA 59.451 40.000 0.00 0.00 35.82 2.74
2181 2960 5.878669 CACAACTAATTGGGAGGTAACCTAC 59.121 44.000 0.00 0.00 42.35 3.18
2182 2961 5.045432 CCACAACTAATTGGGAGGTAACCTA 60.045 44.000 0.00 0.00 42.35 3.08
2183 2962 4.263771 CCACAACTAATTGGGAGGTAACCT 60.264 45.833 0.00 0.00 42.35 3.50
2198 2977 3.311106 GAATCGTCGTTCACCACAACTA 58.689 45.455 0.00 0.00 0.00 2.24
2222 3001 1.450312 CAAGATGCCGACAGTCCCC 60.450 63.158 0.00 0.00 0.00 4.81
2296 3075 5.629133 GCCCTATTCCATGTGTTTACAGAGA 60.629 44.000 0.00 0.00 40.79 3.10
2297 3076 4.576463 GCCCTATTCCATGTGTTTACAGAG 59.424 45.833 0.00 0.00 40.79 3.35
2298 3077 4.227300 AGCCCTATTCCATGTGTTTACAGA 59.773 41.667 0.00 0.00 40.79 3.41
2299 3078 4.526970 AGCCCTATTCCATGTGTTTACAG 58.473 43.478 0.00 0.00 40.79 2.74
2300 3079 4.584638 AGCCCTATTCCATGTGTTTACA 57.415 40.909 0.00 0.00 41.89 2.41
2301 3080 7.338449 TCTTTTAGCCCTATTCCATGTGTTTAC 59.662 37.037 0.00 0.00 0.00 2.01
2302 3081 7.406916 TCTTTTAGCCCTATTCCATGTGTTTA 58.593 34.615 0.00 0.00 0.00 2.01
2304 3083 5.826643 TCTTTTAGCCCTATTCCATGTGTT 58.173 37.500 0.00 0.00 0.00 3.32
2306 3085 6.966534 AATCTTTTAGCCCTATTCCATGTG 57.033 37.500 0.00 0.00 0.00 3.21
2310 3089 7.128883 AGACCTAAATCTTTTAGCCCTATTCCA 59.871 37.037 2.20 0.00 0.00 3.53
2311 3090 7.519057 AGACCTAAATCTTTTAGCCCTATTCC 58.481 38.462 2.20 0.00 0.00 3.01
2312 3091 9.713713 CTAGACCTAAATCTTTTAGCCCTATTC 57.286 37.037 2.20 0.00 0.00 1.75
2313 3092 9.226879 ACTAGACCTAAATCTTTTAGCCCTATT 57.773 33.333 0.00 0.00 0.00 1.73
2314 3093 8.800515 ACTAGACCTAAATCTTTTAGCCCTAT 57.199 34.615 0.00 0.00 0.00 2.57
2315 3094 9.893975 ATACTAGACCTAAATCTTTTAGCCCTA 57.106 33.333 0.00 4.81 0.00 3.53
2330 3122 8.057011 TGGAACATAAGACACATACTAGACCTA 58.943 37.037 0.00 0.00 0.00 3.08
2339 3131 7.701539 AGCATTTTGGAACATAAGACACATA 57.298 32.000 0.00 0.00 39.30 2.29
2344 3136 9.860898 ATTTTCTAGCATTTTGGAACATAAGAC 57.139 29.630 0.00 0.00 39.30 3.01
2389 3181 7.907389 TCTGTTACTTGTCATTCTCCTTACAT 58.093 34.615 0.00 0.00 0.00 2.29
2402 3194 7.201565 GGTGCTAGATGATTTCTGTTACTTGTC 60.202 40.741 0.00 0.00 35.79 3.18
2403 3195 6.595716 GGTGCTAGATGATTTCTGTTACTTGT 59.404 38.462 0.00 0.00 35.79 3.16
2405 3197 6.116126 GGGTGCTAGATGATTTCTGTTACTT 58.884 40.000 0.00 0.00 35.79 2.24
2416 3208 1.410517 CAGTGTCGGGTGCTAGATGAT 59.589 52.381 0.00 0.00 0.00 2.45
2424 3216 3.044305 GTCAGCAGTGTCGGGTGC 61.044 66.667 0.00 0.00 40.17 5.01
2426 3218 0.826256 TACAGTCAGCAGTGTCGGGT 60.826 55.000 0.00 0.00 37.39 5.28
2427 3219 0.388649 GTACAGTCAGCAGTGTCGGG 60.389 60.000 0.00 0.00 37.39 5.14
2428 3220 0.598562 AGTACAGTCAGCAGTGTCGG 59.401 55.000 0.00 0.00 37.39 4.79
2429 3221 2.225727 TGTAGTACAGTCAGCAGTGTCG 59.774 50.000 0.00 0.00 37.39 4.35
2430 3222 3.917329 TGTAGTACAGTCAGCAGTGTC 57.083 47.619 0.00 0.00 37.39 3.67
2431 3223 4.665833 TTTGTAGTACAGTCAGCAGTGT 57.334 40.909 2.68 0.00 39.65 3.55
2433 3225 4.452455 GCATTTTGTAGTACAGTCAGCAGT 59.548 41.667 2.68 0.00 0.00 4.40
2437 3229 7.132694 TCATTGCATTTTGTAGTACAGTCAG 57.867 36.000 2.68 0.00 0.00 3.51
2439 3231 7.023575 CCTTCATTGCATTTTGTAGTACAGTC 58.976 38.462 2.68 0.00 0.00 3.51
2440 3232 6.570378 GCCTTCATTGCATTTTGTAGTACAGT 60.570 38.462 2.68 0.00 0.00 3.55
2441 3233 5.801947 GCCTTCATTGCATTTTGTAGTACAG 59.198 40.000 2.68 0.00 0.00 2.74
2443 3235 5.801947 CAGCCTTCATTGCATTTTGTAGTAC 59.198 40.000 0.00 0.00 0.00 2.73
2451 3283 4.282703 AGAAAGACAGCCTTCATTGCATTT 59.717 37.500 0.00 0.00 33.02 2.32
2453 3285 3.428532 AGAAAGACAGCCTTCATTGCAT 58.571 40.909 0.00 0.00 33.02 3.96
2460 3292 3.591023 GTGTCCTAGAAAGACAGCCTTC 58.409 50.000 1.06 0.00 44.57 3.46
2485 3317 0.596600 ACGTTGTCGGCACTACTGTG 60.597 55.000 0.00 0.00 42.40 3.66
2529 3361 2.845967 CGAAGCGTTCCACAAATAATGC 59.154 45.455 0.00 0.00 37.78 3.56
2541 3373 0.806241 TATTTTGCCCCGAAGCGTTC 59.194 50.000 0.00 0.00 34.65 3.95
2545 3377 2.734276 TTTGTATTTTGCCCCGAAGC 57.266 45.000 0.00 0.00 0.00 3.86
2549 3381 5.423886 ACCAATTATTTGTATTTTGCCCCG 58.576 37.500 0.00 0.00 0.00 5.73
2553 3385 9.632807 TGACAGTACCAATTATTTGTATTTTGC 57.367 29.630 0.00 0.00 0.00 3.68
2560 3392 5.761234 ACGTGTGACAGTACCAATTATTTGT 59.239 36.000 0.00 0.00 0.00 2.83
2576 3408 6.805271 AGTGTATATAAGTGACAACGTGTGAC 59.195 38.462 0.00 0.00 34.63 3.67
2587 3425 8.768501 ATGGAGAACAGAGTGTATATAAGTGA 57.231 34.615 0.00 0.00 0.00 3.41
2595 3433 4.774726 ACAGTGATGGAGAACAGAGTGTAT 59.225 41.667 0.00 0.00 30.95 2.29
2599 3437 2.968574 ACACAGTGATGGAGAACAGAGT 59.031 45.455 7.81 0.00 0.00 3.24
2604 3442 4.867047 CACTCATACACAGTGATGGAGAAC 59.133 45.833 19.74 0.00 43.54 3.01
2617 3455 1.001974 TGCCCACTGACACTCATACAC 59.998 52.381 0.00 0.00 0.00 2.90
2620 3458 1.644509 AGTGCCCACTGACACTCATA 58.355 50.000 0.00 0.00 43.55 2.15
2621 3459 2.456627 AGTGCCCACTGACACTCAT 58.543 52.632 0.00 0.00 43.55 2.90
2625 3463 1.344763 AGTTAGAGTGCCCACTGACAC 59.655 52.381 5.53 0.00 42.66 3.67
2626 3464 1.717032 AGTTAGAGTGCCCACTGACA 58.283 50.000 5.53 0.00 42.66 3.58
2629 3467 3.589988 CACTTAGTTAGAGTGCCCACTG 58.410 50.000 5.53 0.00 42.66 3.66
2630 3468 2.567615 CCACTTAGTTAGAGTGCCCACT 59.432 50.000 0.00 0.00 45.84 4.00
2638 3478 3.935828 GCAAGAAGCCCACTTAGTTAGAG 59.064 47.826 0.00 0.00 35.82 2.43
2692 3544 6.425721 CCACTTTCGTAATTGAGTTTCCAGTA 59.574 38.462 0.00 0.00 0.00 2.74
2693 3545 5.238650 CCACTTTCGTAATTGAGTTTCCAGT 59.761 40.000 0.00 0.00 0.00 4.00
2694 3546 5.468746 TCCACTTTCGTAATTGAGTTTCCAG 59.531 40.000 0.00 0.00 0.00 3.86
2695 3547 5.369833 TCCACTTTCGTAATTGAGTTTCCA 58.630 37.500 0.00 0.00 0.00 3.53
2696 3548 5.934935 TCCACTTTCGTAATTGAGTTTCC 57.065 39.130 0.00 0.00 0.00 3.13
2697 3549 7.326063 CCAATTCCACTTTCGTAATTGAGTTTC 59.674 37.037 7.92 0.00 40.24 2.78
2699 3551 6.264518 ACCAATTCCACTTTCGTAATTGAGTT 59.735 34.615 7.92 0.00 40.24 3.01
2700 3552 5.768164 ACCAATTCCACTTTCGTAATTGAGT 59.232 36.000 7.92 2.90 40.24 3.41
2703 3555 7.590279 AGTAACCAATTCCACTTTCGTAATTG 58.410 34.615 0.00 0.00 38.47 2.32
2722 3574 4.024641 CCGGCGGTAATTTCATTAGTAACC 60.025 45.833 19.97 0.00 0.00 2.85
2766 3618 1.219124 GCTTCCTCATCTCCACGCA 59.781 57.895 0.00 0.00 0.00 5.24
2905 3757 2.435059 GAAGCAGGTCGTCCAGGC 60.435 66.667 0.51 4.40 36.82 4.85
2938 3790 2.670148 ATCACCCAGTTCCGGCTCC 61.670 63.158 0.00 0.00 0.00 4.70
3018 3870 2.740055 GGCTGGCTGACTGACACG 60.740 66.667 0.00 0.00 0.00 4.49
3037 3889 3.379452 TCCTCTTCCCTGAAGATCTTCC 58.621 50.000 28.40 13.80 45.84 3.46
3041 3917 2.114616 TGCTCCTCTTCCCTGAAGATC 58.885 52.381 6.97 0.00 45.84 2.75
3045 3921 1.434188 TTGTGCTCCTCTTCCCTGAA 58.566 50.000 0.00 0.00 0.00 3.02
3046 3922 1.661463 ATTGTGCTCCTCTTCCCTGA 58.339 50.000 0.00 0.00 0.00 3.86
3047 3923 3.853355 ATATTGTGCTCCTCTTCCCTG 57.147 47.619 0.00 0.00 0.00 4.45
3048 3924 5.398012 GGTTAATATTGTGCTCCTCTTCCCT 60.398 44.000 0.00 0.00 0.00 4.20
3049 3925 4.822350 GGTTAATATTGTGCTCCTCTTCCC 59.178 45.833 0.00 0.00 0.00 3.97
3050 3926 5.685728 AGGTTAATATTGTGCTCCTCTTCC 58.314 41.667 0.00 0.00 0.00 3.46
3053 3929 6.567602 AGAAGGTTAATATTGTGCTCCTCT 57.432 37.500 0.00 0.00 0.00 3.69
3056 3932 9.780186 AATAGTAGAAGGTTAATATTGTGCTCC 57.220 33.333 0.00 0.00 0.00 4.70
3066 3942 7.553044 GCACCTGTGAAATAGTAGAAGGTTAAT 59.447 37.037 0.51 0.00 34.36 1.40
3067 3943 6.877322 GCACCTGTGAAATAGTAGAAGGTTAA 59.123 38.462 0.51 0.00 34.36 2.01
3068 3944 6.403878 GCACCTGTGAAATAGTAGAAGGTTA 58.596 40.000 0.51 0.00 34.36 2.85
3075 3951 3.520290 TCGGCACCTGTGAAATAGTAG 57.480 47.619 0.51 0.00 0.00 2.57
3091 3967 1.472276 CGTACGACTTGCAGATCGGC 61.472 60.000 21.32 11.23 42.67 5.54
3253 4129 2.029666 GGATGGGGCGACGATGAG 59.970 66.667 0.00 0.00 0.00 2.90
3321 4197 4.552355 TCAACAGTTGTACATACTCCGTG 58.448 43.478 13.14 2.20 0.00 4.94
3377 4257 4.657824 AACGTCACGCCTGACCCG 62.658 66.667 9.82 2.83 43.64 5.28
3586 4472 3.440872 CAGCCTAGTTCTCGAAGTACAGT 59.559 47.826 0.00 0.00 0.00 3.55
3588 4474 3.418995 ACAGCCTAGTTCTCGAAGTACA 58.581 45.455 0.00 0.00 0.00 2.90
3589 4475 4.496175 GCTACAGCCTAGTTCTCGAAGTAC 60.496 50.000 0.00 0.00 34.31 2.73
3590 4476 3.626670 GCTACAGCCTAGTTCTCGAAGTA 59.373 47.826 0.00 0.00 34.31 2.24
3591 4477 2.424246 GCTACAGCCTAGTTCTCGAAGT 59.576 50.000 0.00 0.00 34.31 3.01
3592 4478 3.073144 GCTACAGCCTAGTTCTCGAAG 57.927 52.381 0.00 0.00 34.31 3.79
3612 4498 2.187946 CGCTCCCTTGCCAGTAGG 59.812 66.667 0.00 0.00 38.23 3.18
3613 4499 2.512515 GCGCTCCCTTGCCAGTAG 60.513 66.667 0.00 0.00 0.00 2.57
3615 4501 4.711949 CTGCGCTCCCTTGCCAGT 62.712 66.667 9.73 0.00 31.41 4.00
3616 4502 4.711949 ACTGCGCTCCCTTGCCAG 62.712 66.667 9.73 0.00 37.31 4.85
3629 4515 4.687215 TGCTGGAGACGCCACTGC 62.687 66.667 0.00 0.00 43.33 4.40
3630 4516 2.031012 TTGCTGGAGACGCCACTG 59.969 61.111 0.00 0.00 43.33 3.66
3631 4517 2.031163 GTTGCTGGAGACGCCACT 59.969 61.111 0.00 0.00 43.33 4.00
3632 4518 3.050275 GGTTGCTGGAGACGCCAC 61.050 66.667 0.00 0.00 43.33 5.01
3633 4519 3.535629 CTGGTTGCTGGAGACGCCA 62.536 63.158 0.00 0.00 46.96 5.69
3634 4520 2.743928 CTGGTTGCTGGAGACGCC 60.744 66.667 0.00 0.00 37.10 5.68
3635 4521 2.743928 CCTGGTTGCTGGAGACGC 60.744 66.667 0.00 0.00 0.00 5.19
3636 4522 2.046892 CCCTGGTTGCTGGAGACG 60.047 66.667 0.00 0.00 0.00 4.18
3637 4523 0.606673 GAACCCTGGTTGCTGGAGAC 60.607 60.000 6.24 0.00 38.60 3.36
3638 4524 1.761174 GAACCCTGGTTGCTGGAGA 59.239 57.895 6.24 0.00 38.60 3.71
3639 4525 1.672356 CGAACCCTGGTTGCTGGAG 60.672 63.158 6.24 0.00 38.60 3.86
3641 4527 1.672356 CTCGAACCCTGGTTGCTGG 60.672 63.158 6.24 0.00 38.60 4.85
3643 4529 2.032681 GCTCGAACCCTGGTTGCT 59.967 61.111 6.24 0.00 38.60 3.91
3644 4530 3.056328 GGCTCGAACCCTGGTTGC 61.056 66.667 6.24 3.86 38.60 4.17
3645 4531 1.966451 GTGGCTCGAACCCTGGTTG 60.966 63.158 6.24 0.00 38.60 3.77
3647 4533 4.003788 CGTGGCTCGAACCCTGGT 62.004 66.667 2.21 0.00 42.86 4.00
3648 4534 3.934391 GACGTGGCTCGAACCCTGG 62.934 68.421 16.57 0.00 42.86 4.45
3664 4550 0.036671 ACCAGAAATTCGTCCCCGAC 60.037 55.000 0.00 0.00 44.13 4.79
3665 4551 0.688487 AACCAGAAATTCGTCCCCGA 59.312 50.000 0.00 0.00 42.41 5.14
3666 4552 1.467342 GAAACCAGAAATTCGTCCCCG 59.533 52.381 0.00 0.00 0.00 5.73
3668 4554 3.188667 GTGAGAAACCAGAAATTCGTCCC 59.811 47.826 0.00 0.00 0.00 4.46
3669 4555 3.813166 TGTGAGAAACCAGAAATTCGTCC 59.187 43.478 0.00 0.00 0.00 4.79
3670 4556 5.418310 TTGTGAGAAACCAGAAATTCGTC 57.582 39.130 0.00 0.00 0.00 4.20
3671 4557 4.275936 CCTTGTGAGAAACCAGAAATTCGT 59.724 41.667 0.00 0.00 0.00 3.85
3672 4558 4.320494 CCCTTGTGAGAAACCAGAAATTCG 60.320 45.833 0.00 0.00 0.00 3.34
3673 4559 4.827284 TCCCTTGTGAGAAACCAGAAATTC 59.173 41.667 0.00 0.00 0.00 2.17
3675 4561 4.453480 TCCCTTGTGAGAAACCAGAAAT 57.547 40.909 0.00 0.00 0.00 2.17
3676 4562 3.943671 TCCCTTGTGAGAAACCAGAAA 57.056 42.857 0.00 0.00 0.00 2.52
3677 4563 3.754965 CATCCCTTGTGAGAAACCAGAA 58.245 45.455 0.00 0.00 0.00 3.02
3678 4564 2.553028 GCATCCCTTGTGAGAAACCAGA 60.553 50.000 0.00 0.00 0.00 3.86
3679 4565 1.815003 GCATCCCTTGTGAGAAACCAG 59.185 52.381 0.00 0.00 0.00 4.00
3680 4566 1.425066 AGCATCCCTTGTGAGAAACCA 59.575 47.619 0.00 0.00 0.00 3.67
3681 4567 2.206576 AGCATCCCTTGTGAGAAACC 57.793 50.000 0.00 0.00 0.00 3.27
3683 4569 3.560025 GGAGAAGCATCCCTTGTGAGAAA 60.560 47.826 0.00 0.00 32.78 2.52
3684 4570 2.026822 GGAGAAGCATCCCTTGTGAGAA 60.027 50.000 0.00 0.00 32.78 2.87
3685 4571 1.556911 GGAGAAGCATCCCTTGTGAGA 59.443 52.381 0.00 0.00 32.78 3.27
3686 4572 1.558756 AGGAGAAGCATCCCTTGTGAG 59.441 52.381 0.00 0.00 40.53 3.51
3687 4573 1.661463 AGGAGAAGCATCCCTTGTGA 58.339 50.000 0.00 0.00 40.53 3.58
3688 4574 3.853355 ATAGGAGAAGCATCCCTTGTG 57.147 47.619 4.62 0.00 40.53 3.33
3689 4575 5.158141 TGATATAGGAGAAGCATCCCTTGT 58.842 41.667 4.62 0.00 40.53 3.16
3690 4576 5.752036 TGATATAGGAGAAGCATCCCTTG 57.248 43.478 4.62 0.00 40.53 3.61
3691 4577 6.966637 ATTGATATAGGAGAAGCATCCCTT 57.033 37.500 4.62 0.00 40.53 3.95
3692 4578 8.325046 GTTTATTGATATAGGAGAAGCATCCCT 58.675 37.037 4.70 4.70 40.53 4.20
3693 4579 7.554476 GGTTTATTGATATAGGAGAAGCATCCC 59.446 40.741 0.00 0.00 40.53 3.85
3694 4580 8.103305 TGGTTTATTGATATAGGAGAAGCATCC 58.897 37.037 0.00 0.00 39.89 3.51
3695 4581 9.678260 ATGGTTTATTGATATAGGAGAAGCATC 57.322 33.333 0.00 0.00 30.83 3.91
3696 4582 9.458727 CATGGTTTATTGATATAGGAGAAGCAT 57.541 33.333 0.00 0.00 35.22 3.79
3697 4583 7.884877 CCATGGTTTATTGATATAGGAGAAGCA 59.115 37.037 2.57 0.00 0.00 3.91
3698 4584 7.337942 CCCATGGTTTATTGATATAGGAGAAGC 59.662 40.741 11.73 0.00 0.00 3.86
3699 4585 8.386264 ACCCATGGTTTATTGATATAGGAGAAG 58.614 37.037 11.73 0.00 27.29 2.85
3700 4586 8.163408 CACCCATGGTTTATTGATATAGGAGAA 58.837 37.037 11.73 0.00 31.02 2.87
3701 4587 7.689299 CACCCATGGTTTATTGATATAGGAGA 58.311 38.462 11.73 0.00 31.02 3.71
3702 4588 6.375455 GCACCCATGGTTTATTGATATAGGAG 59.625 42.308 11.73 0.00 31.02 3.69
3703 4589 6.045459 AGCACCCATGGTTTATTGATATAGGA 59.955 38.462 11.73 0.00 31.02 2.94
3704 4590 6.248433 AGCACCCATGGTTTATTGATATAGG 58.752 40.000 11.73 0.00 31.02 2.57
3705 4591 8.103305 ACTAGCACCCATGGTTTATTGATATAG 58.897 37.037 11.73 5.91 37.77 1.31
3706 4592 7.882791 CACTAGCACCCATGGTTTATTGATATA 59.117 37.037 11.73 0.00 37.77 0.86
3707 4593 6.716628 CACTAGCACCCATGGTTTATTGATAT 59.283 38.462 11.73 0.00 37.77 1.63
3708 4594 6.061441 CACTAGCACCCATGGTTTATTGATA 58.939 40.000 11.73 2.13 37.77 2.15
3709 4595 4.889409 CACTAGCACCCATGGTTTATTGAT 59.111 41.667 11.73 0.98 37.77 2.57
3710 4596 4.269183 CACTAGCACCCATGGTTTATTGA 58.731 43.478 11.73 0.00 37.77 2.57
3711 4597 3.181487 GCACTAGCACCCATGGTTTATTG 60.181 47.826 11.73 0.74 41.58 1.90
3712 4598 3.023832 GCACTAGCACCCATGGTTTATT 58.976 45.455 11.73 0.00 41.58 1.40
3713 4599 2.654863 GCACTAGCACCCATGGTTTAT 58.345 47.619 11.73 0.00 41.58 1.40
3714 4600 1.340600 GGCACTAGCACCCATGGTTTA 60.341 52.381 11.73 0.00 44.61 2.01
3715 4601 0.611896 GGCACTAGCACCCATGGTTT 60.612 55.000 11.73 0.00 44.61 3.27
3716 4602 1.000896 GGCACTAGCACCCATGGTT 60.001 57.895 11.73 0.00 44.61 3.67
3717 4603 2.677228 GGCACTAGCACCCATGGT 59.323 61.111 11.73 0.00 44.61 3.55
3718 4604 2.124151 GGGCACTAGCACCCATGG 60.124 66.667 14.48 4.14 46.22 3.66
3722 4608 1.153086 CTCATGGGCACTAGCACCC 60.153 63.158 12.83 12.83 46.13 4.61
3723 4609 0.035056 AACTCATGGGCACTAGCACC 60.035 55.000 0.00 0.00 46.13 5.01
3725 4611 1.350684 TGAAACTCATGGGCACTAGCA 59.649 47.619 0.00 0.00 44.61 3.49
3726 4612 2.113860 TGAAACTCATGGGCACTAGC 57.886 50.000 0.00 0.00 41.10 3.42
3727 4613 4.148128 AGATGAAACTCATGGGCACTAG 57.852 45.455 0.00 0.00 37.20 2.57
3728 4614 4.574674 AAGATGAAACTCATGGGCACTA 57.425 40.909 0.00 0.00 37.20 2.74
3729 4615 3.446442 AAGATGAAACTCATGGGCACT 57.554 42.857 0.00 0.00 37.20 4.40
3730 4616 4.525912 AAAAGATGAAACTCATGGGCAC 57.474 40.909 0.00 0.00 37.20 5.01
3731 4617 5.774690 AGTAAAAAGATGAAACTCATGGGCA 59.225 36.000 0.00 0.00 37.20 5.36
3732 4618 6.272822 AGTAAAAAGATGAAACTCATGGGC 57.727 37.500 0.00 0.00 37.20 5.36
3733 4619 8.454106 CAGTAGTAAAAAGATGAAACTCATGGG 58.546 37.037 0.00 0.00 37.20 4.00
3734 4620 9.003658 ACAGTAGTAAAAAGATGAAACTCATGG 57.996 33.333 0.00 0.00 37.20 3.66
3749 4635 9.971922 GGTAAGTTGAGAAGTACAGTAGTAAAA 57.028 33.333 0.00 0.00 30.67 1.52
3750 4636 9.359653 AGGTAAGTTGAGAAGTACAGTAGTAAA 57.640 33.333 0.00 0.00 30.67 2.01
3751 4637 8.930846 AGGTAAGTTGAGAAGTACAGTAGTAA 57.069 34.615 0.00 0.00 30.67 2.24
3752 4638 9.664332 CTAGGTAAGTTGAGAAGTACAGTAGTA 57.336 37.037 0.00 0.00 0.00 1.82
3753 4639 7.121020 GCTAGGTAAGTTGAGAAGTACAGTAGT 59.879 40.741 0.00 0.00 0.00 2.73
3754 4640 7.474190 GCTAGGTAAGTTGAGAAGTACAGTAG 58.526 42.308 0.00 0.00 0.00 2.57
3755 4641 6.093219 CGCTAGGTAAGTTGAGAAGTACAGTA 59.907 42.308 0.00 0.00 0.00 2.74
3756 4642 5.106237 CGCTAGGTAAGTTGAGAAGTACAGT 60.106 44.000 0.00 0.00 0.00 3.55
3757 4643 5.123502 TCGCTAGGTAAGTTGAGAAGTACAG 59.876 44.000 0.00 0.00 0.00 2.74
3758 4644 5.005740 TCGCTAGGTAAGTTGAGAAGTACA 58.994 41.667 0.00 0.00 0.00 2.90
3775 4661 1.126846 CAAGCAGAACCGTTTCGCTAG 59.873 52.381 11.09 0.00 39.26 3.42
3778 4664 0.384353 GACAAGCAGAACCGTTTCGC 60.384 55.000 2.34 2.34 36.78 4.70
3825 4714 3.075005 ACGATGTACAGCCCGGCT 61.075 61.111 5.94 5.94 40.77 5.52
3862 4751 2.657237 CCTCGGGCTCTTGACGTT 59.343 61.111 0.00 0.00 0.00 3.99
3887 4776 2.969238 CCAGATCATCGGCGTGCC 60.969 66.667 6.85 0.00 0.00 5.01
3973 4862 5.533482 CCATTACTTCTCGATCGGATTCTT 58.467 41.667 16.41 0.00 0.00 2.52
3975 4864 3.675698 GCCATTACTTCTCGATCGGATTC 59.324 47.826 16.41 0.00 0.00 2.52
3978 4867 2.293677 GAGCCATTACTTCTCGATCGGA 59.706 50.000 16.41 8.74 0.00 4.55
3980 4869 3.634568 AGAGCCATTACTTCTCGATCG 57.365 47.619 9.36 9.36 32.42 3.69
3993 4882 4.082026 GCTGTTCCAAAATTGTAGAGCCAT 60.082 41.667 0.00 0.00 0.00 4.40
4013 4906 2.008329 GCTGAGAAAGATCACTGGCTG 58.992 52.381 0.00 0.00 0.00 4.85
4035 4928 2.760634 ACAGAACACATGCGACCATA 57.239 45.000 0.00 0.00 0.00 2.74
4042 4935 1.159285 TGCAGCTACAGAACACATGC 58.841 50.000 0.00 0.00 0.00 4.06
4051 4944 3.648339 AAAACAACCATGCAGCTACAG 57.352 42.857 0.00 0.00 0.00 2.74
4059 4953 1.611491 TCCCTCGAAAAACAACCATGC 59.389 47.619 0.00 0.00 0.00 4.06
4062 4956 2.171870 ACTCTCCCTCGAAAAACAACCA 59.828 45.455 0.00 0.00 0.00 3.67
4073 4967 1.671845 GCACACTAGTACTCTCCCTCG 59.328 57.143 0.00 0.00 0.00 4.63
4114 5008 2.940890 ATTAGCGGCGACACCATGGG 62.941 60.000 18.09 7.72 39.03 4.00
4115 5009 1.523711 ATTAGCGGCGACACCATGG 60.524 57.895 12.98 11.19 39.03 3.66
4119 5017 0.458889 TGTACATTAGCGGCGACACC 60.459 55.000 12.98 0.00 0.00 4.16
4120 5018 1.352114 TTGTACATTAGCGGCGACAC 58.648 50.000 12.98 0.00 0.00 3.67
4142 5040 5.514914 CACAACAACATTTACGGCCATTATC 59.485 40.000 2.24 0.00 0.00 1.75
4149 5047 2.606065 GGGACACAACAACATTTACGGC 60.606 50.000 0.00 0.00 0.00 5.68
4197 5095 3.655350 ATTGGTAAGCACGGCCCCC 62.655 63.158 0.00 0.00 0.00 5.40
4198 5096 0.394625 TAATTGGTAAGCACGGCCCC 60.395 55.000 0.00 0.00 0.00 5.80
4199 5097 0.736636 GTAATTGGTAAGCACGGCCC 59.263 55.000 0.00 0.00 0.00 5.80
4200 5098 0.375803 CGTAATTGGTAAGCACGGCC 59.624 55.000 0.00 0.00 0.00 6.13
4201 5099 0.375803 CCGTAATTGGTAAGCACGGC 59.624 55.000 1.08 0.00 44.78 5.68
4203 5101 1.080298 TGCCGTAATTGGTAAGCACG 58.920 50.000 0.00 0.00 0.00 5.34
4204 5102 2.537639 GTGCCGTAATTGGTAAGCAC 57.462 50.000 0.00 0.00 43.14 4.40
4245 5143 5.696260 TTCTGTACGATTTGATTGTAGCG 57.304 39.130 0.00 0.00 30.00 4.26
4257 5160 3.673594 CGCCTCTGAAGTTTCTGTACGAT 60.674 47.826 0.00 0.00 0.00 3.73
4258 5161 2.351447 CGCCTCTGAAGTTTCTGTACGA 60.351 50.000 0.00 0.00 0.00 3.43
4259 5162 1.986378 CGCCTCTGAAGTTTCTGTACG 59.014 52.381 0.00 0.00 0.00 3.67
4260 5163 3.299340 TCGCCTCTGAAGTTTCTGTAC 57.701 47.619 0.00 0.00 0.00 2.90
4261 5164 4.220821 AGATTCGCCTCTGAAGTTTCTGTA 59.779 41.667 0.00 0.00 0.00 2.74
4262 5165 2.910688 TTCGCCTCTGAAGTTTCTGT 57.089 45.000 0.00 0.00 0.00 3.41
4313 5258 2.992689 TGCACAATGGCTGCAGGG 60.993 61.111 17.12 0.00 39.76 4.45
4321 5266 2.821378 TGACTGGAGAAATGCACAATGG 59.179 45.455 0.00 0.00 0.00 3.16
4344 5303 8.478775 ACTATTGCCTAGACTGAACATACATA 57.521 34.615 0.00 0.00 0.00 2.29
4349 5308 5.939764 TGACTATTGCCTAGACTGAACAT 57.060 39.130 0.00 0.00 0.00 2.71
4350 5309 5.664457 CATGACTATTGCCTAGACTGAACA 58.336 41.667 0.00 0.00 0.00 3.18
4351 5310 4.509600 GCATGACTATTGCCTAGACTGAAC 59.490 45.833 0.00 0.00 33.95 3.18
4352 5311 4.406972 AGCATGACTATTGCCTAGACTGAA 59.593 41.667 0.00 0.00 41.06 3.02
4353 5312 3.963374 AGCATGACTATTGCCTAGACTGA 59.037 43.478 0.00 0.00 41.06 3.41
4354 5313 4.056740 CAGCATGACTATTGCCTAGACTG 58.943 47.826 0.00 0.00 41.06 3.51
4355 5314 3.963374 TCAGCATGACTATTGCCTAGACT 59.037 43.478 0.00 0.00 42.56 3.24
4356 5315 4.327982 TCAGCATGACTATTGCCTAGAC 57.672 45.455 0.00 0.00 42.56 2.59
4374 5333 1.448540 CCGCCTGGCACTAGTTCAG 60.449 63.158 20.29 13.40 0.00 3.02
4375 5334 2.662596 CCGCCTGGCACTAGTTCA 59.337 61.111 20.29 0.00 0.00 3.18
4392 5351 2.026301 ATCCGTTAGCTCGCTCGC 59.974 61.111 0.00 0.00 0.00 5.03
4393 5352 0.248498 TTCATCCGTTAGCTCGCTCG 60.248 55.000 0.00 0.00 0.00 5.03
4394 5353 1.922570 TTTCATCCGTTAGCTCGCTC 58.077 50.000 0.00 0.00 0.00 5.03
4395 5354 2.380084 TTTTCATCCGTTAGCTCGCT 57.620 45.000 0.00 0.00 0.00 4.93
4456 5421 1.233019 CTATCCTGAATTGGCTGGCG 58.767 55.000 0.00 0.00 0.00 5.69
4476 5441 0.106619 GCCCGAGTTCTCCTCTCCTA 60.107 60.000 0.00 0.00 38.11 2.94
4507 5472 5.796502 TCCCCTCTAATCAATTGGTTTCT 57.203 39.130 9.68 0.00 0.00 2.52
4543 5509 2.031682 CCTCTTGTGCTTCTTTTCGGTG 60.032 50.000 0.00 0.00 0.00 4.94
4550 5516 3.777106 TCATGTCCTCTTGTGCTTCTT 57.223 42.857 0.00 0.00 0.00 2.52
4556 5522 3.683340 CACAGTGATCATGTCCTCTTGTG 59.317 47.826 0.00 1.19 0.00 3.33
4564 5530 5.808042 AAAGTATGCACAGTGATCATGTC 57.192 39.130 4.15 0.97 0.00 3.06
4648 5620 4.355437 ACGATGAGATAAAGAGTTGAGCG 58.645 43.478 0.00 0.00 0.00 5.03
4649 5621 5.458452 CAGACGATGAGATAAAGAGTTGAGC 59.542 44.000 0.00 0.00 0.00 4.26
4650 5622 5.976534 CCAGACGATGAGATAAAGAGTTGAG 59.023 44.000 0.00 0.00 0.00 3.02
4651 5623 5.419155 ACCAGACGATGAGATAAAGAGTTGA 59.581 40.000 0.00 0.00 0.00 3.18
4655 5627 5.009110 TGCTACCAGACGATGAGATAAAGAG 59.991 44.000 0.00 0.00 0.00 2.85
4670 5642 1.055849 TCAAACCAGCTGCTACCAGA 58.944 50.000 8.66 0.00 41.77 3.86
4678 5650 2.195922 GTTTTGCAGTCAAACCAGCTG 58.804 47.619 6.78 6.78 41.48 4.24
4706 5679 6.019398 AGGTTTTGCGTGCTAATTTTGTTTAC 60.019 34.615 0.00 0.00 0.00 2.01
4787 5760 3.417224 CCATCGCCATCGCCATCG 61.417 66.667 0.00 0.00 35.26 3.84
4788 5761 3.730761 GCCATCGCCATCGCCATC 61.731 66.667 0.00 0.00 35.26 3.51
4793 5766 3.417224 CCATCGCCATCGCCATCG 61.417 66.667 0.00 0.00 35.26 3.84
4794 5767 3.730761 GCCATCGCCATCGCCATC 61.731 66.667 0.00 0.00 35.26 3.51


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.